PATIENT_BARCODE SAMPLE_BARCODE ALIQUOT_BARCODE ALIQUOT_UUID DATATYPE PLATFORM_NAME FILE_LOCATION_URL DATA_LEVEL ARCHIVE_NAME BATCH_NUMBER DATE_ADDED Annotation Classifications Annotation Categories Annotation Notes TCGA-A1-A0SB TCGA-A1-A0SB-01A TCGA-A1-A0SB-01A-11D-A140-02 cf5b6ec5-7c80-4113-be05-6e54ba99bc6d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SB TCGA-A1-A0SB-01A TCGA-A1-A0SB-01A-11D-A141-01 d4c2fab5-8fbd-4ab5-b18c-37f9b4b576a8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SB TCGA-A1-A0SB-01A TCGA-A1-A0SB-01A-11D-A141-01 d4c2fab5-8fbd-4ab5-b18c-37f9b4b576a8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D07_778102.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-A1-A0SB TCGA-A1-A0SB-01A TCGA-A1-A0SB-01A-11D-A141-01 d4c2fab5-8fbd-4ab5-b18c-37f9b4b576a8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D07_778102.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SB TCGA-A1-A0SB-01A TCGA-A1-A0SB-01A-11D-A141-01 d4c2fab5-8fbd-4ab5-b18c-37f9b4b576a8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D07_778102.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SB TCGA-A1-A0SB-01A TCGA-A1-A0SB-01A-11D-A141-01 d4c2fab5-8fbd-4ab5-b18c-37f9b4b576a8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D07_778102.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SB TCGA-A1-A0SB-01A TCGA-A1-A0SB-01A-11D-A141-01 d4c2fab5-8fbd-4ab5-b18c-37f9b4b576a8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D07_778102.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SB TCGA-A1-A0SB-01A TCGA-A1-A0SB-01A-11D-A141-01 d4c2fab5-8fbd-4ab5-b18c-37f9b4b576a8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D07_778102.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SB TCGA-A1-A0SB-01A TCGA-A1-A0SB-01A-11D-A141-01 d4c2fab5-8fbd-4ab5-b18c-37f9b4b576a8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D07_778102.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SB TCGA-A1-A0SB-01A TCGA-A1-A0SB-01A-11D-A141-01 d4c2fab5-8fbd-4ab5-b18c-37f9b4b576a8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D07_778102.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-A1-A0SB TCGA-A1-A0SB-01A TCGA-A1-A0SB-01A-11D-A142-09 db9d40fb-bfce-4c3b-a6c2-41c5c88982f1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SB TCGA-A1-A0SB-01A TCGA-A1-A0SB-01A-11D-A145-05 41e4e50f-cc77-4b97-8918-c632e83df75a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SB TCGA-A1-A0SB-01A TCGA-A1-A0SB-01A-11D-A145-05 41e4e50f-cc77-4b97-8918-c632e83df75a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818055_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-A1-A0SB TCGA-A1-A0SB-01A TCGA-A1-A0SB-01A-11D-A145-05 41e4e50f-cc77-4b97-8918-c632e83df75a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818055_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-A1-A0SB TCGA-A1-A0SB-01A TCGA-A1-A0SB-01A-11D-A145-05 41e4e50f-cc77-4b97-8918-c632e83df75a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-A1-A0SB-01A-11D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-A1-A0SB TCGA-A1-A0SB-01A TCGA-A1-A0SB-01A-11D-A145-05 41e4e50f-cc77-4b97-8918-c632e83df75a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-A1-A0SB-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-A1-A0SB TCGA-A1-A0SB-01A TCGA-A1-A0SB-01A-11R-A143-13 859615ef-7c9a-4ab9-b9f0-0b62674b60e1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SB TCGA-A1-A0SB-01A TCGA-A1-A0SB-01A-11R-A143-13 859615ef-7c9a-4ab9-b9f0-0b62674b60e1 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A1-A0SB-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-A1-A0SB TCGA-A1-A0SB-01A TCGA-A1-A0SB-01A-11R-A143-13 859615ef-7c9a-4ab9-b9f0-0b62674b60e1 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A1-A0SB-01A-11R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-A1-A0SB TCGA-A1-A0SB-01A TCGA-A1-A0SB-01A-11R-A144-07 a2405d64-34eb-4915-abf7-8530151d5cb0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SB TCGA-A1-A0SB-01A TCGA-A1-A0SB-01A-11R-A144-07 a2405d64-34eb-4915-abf7-8530151d5cb0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_455395.TCGA-A1-A0SB-01A-11R-A144-07.110829_UNC10-SN254_0272_BB07RMABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SB TCGA-A1-A0SB-01A TCGA-A1-A0SB-01A-11R-A144-07 a2405d64-34eb-4915-abf7-8530151d5cb0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_455415.TCGA-A1-A0SB-01A-11R-A144-07.110829_UNC10-SN254_0272_BB07RMABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SB TCGA-A1-A0SB-01A TCGA-A1-A0SB-01A-11R-A144-07 a2405d64-34eb-4915-abf7-8530151d5cb0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_455446.TCGA-A1-A0SB-01A-11R-A144-07.110829_UNC10-SN254_0272_BB07RMABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SB TCGA-A1-A0SB-01A TCGA-A1-A0SB-01A-11W-A187-09 2f329113-7292-4150-9329-965fa930353d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SB TCGA-A1-A0SB-10B TCGA-A1-A0SB-10B-01D-A140-02 1af66054-d66a-4df0-9b44-d042d0614f60 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SB TCGA-A1-A0SB-10B TCGA-A1-A0SB-10B-01D-A141-01 c7617c39-43fd-42b6-9e97-27525a2df44c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SB TCGA-A1-A0SB-10B TCGA-A1-A0SB-10B-01D-A141-01 c7617c39-43fd-42b6-9e97-27525a2df44c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D08_777960.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-A1-A0SB TCGA-A1-A0SB-10B TCGA-A1-A0SB-10B-01D-A141-01 c7617c39-43fd-42b6-9e97-27525a2df44c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D08_777960.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SB TCGA-A1-A0SB-10B TCGA-A1-A0SB-10B-01D-A141-01 c7617c39-43fd-42b6-9e97-27525a2df44c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D08_777960.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SB TCGA-A1-A0SB-10B TCGA-A1-A0SB-10B-01D-A141-01 c7617c39-43fd-42b6-9e97-27525a2df44c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D08_777960.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SB TCGA-A1-A0SB-10B TCGA-A1-A0SB-10B-01D-A141-01 c7617c39-43fd-42b6-9e97-27525a2df44c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D08_777960.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SB TCGA-A1-A0SB-10B TCGA-A1-A0SB-10B-01D-A141-01 c7617c39-43fd-42b6-9e97-27525a2df44c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D08_777960.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SB TCGA-A1-A0SB-10B TCGA-A1-A0SB-10B-01D-A141-01 c7617c39-43fd-42b6-9e97-27525a2df44c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D08_777960.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SB TCGA-A1-A0SB-10B TCGA-A1-A0SB-10B-01D-A141-01 c7617c39-43fd-42b6-9e97-27525a2df44c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D08_777960.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-A1-A0SB TCGA-A1-A0SB-10B TCGA-A1-A0SB-10B-01D-A142-09 a3254f8e-3bbd-42fc-abea-a5f25b7648b3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SB TCGA-A1-A0SB-10B TCGA-A1-A0SB-10B-01W-A187-09 ee50e8db-6a4d-48cb-ac13-5eb41436b0ae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11D-A10X-02 3b7fe46a-f5d4-4b75-bc1a-6815820c047d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11D-A10Y-09 1847727f-ea57-4e2e-84e5-a10e764c9096 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11D-A10Y-09 1847727f-ea57-4e2e-84e5-a10e764c9096 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11D-A111-01 07321363-1d47-430a-a3ce-ec16f9b52d3a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11D-A111-01 07321363-1d47-430a-a3ce-ec16f9b52d3a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F05_735040.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11D-A111-01 07321363-1d47-430a-a3ce-ec16f9b52d3a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F05_735040.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11D-A111-01 07321363-1d47-430a-a3ce-ec16f9b52d3a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F05_735040.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11D-A111-01 07321363-1d47-430a-a3ce-ec16f9b52d3a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F05_735040.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11D-A111-01 07321363-1d47-430a-a3ce-ec16f9b52d3a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F05_735040.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11D-A111-01 07321363-1d47-430a-a3ce-ec16f9b52d3a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F05_735040.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11D-A111-01 07321363-1d47-430a-a3ce-ec16f9b52d3a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F05_735040.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11D-A111-01 07321363-1d47-430a-a3ce-ec16f9b52d3a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F05_735040.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11D-A112-05 780faa9c-3ecf-48ed-9f8d-78842fd0809e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11D-A112-05 780faa9c-3ecf-48ed-9f8d-78842fd0809e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-A1-A0SD-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11D-A112-05 780faa9c-3ecf-48ed-9f8d-78842fd0809e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-A1-A0SD-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11D-A112-05 780faa9c-3ecf-48ed-9f8d-78842fd0809e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-A1-A0SD-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11R-A114-13 151626d0-a650-447a-a2b0-1df53c31c682 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11R-A114-13 151626d0-a650-447a-a2b0-1df53c31c682 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A1-A0SD-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11R-A114-13 151626d0-a650-447a-a2b0-1df53c31c682 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A1-A0SD-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11R-A115-07 15bad71d-3031-413b-9e8d-6426ae5dfbea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11R-A115-07 15bad71d-3031-413b-9e8d-6426ae5dfbea Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012811_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11R-A115-07 15bad71d-3031-413b-9e8d-6426ae5dfbea Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012811_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11R-A115-07 15bad71d-3031-413b-9e8d-6426ae5dfbea Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012811_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11R-A115-07 15bad71d-3031-413b-9e8d-6426ae5dfbea RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_447863.TCGA-A1-A0SD-01A-11R-A115-07.110620_UNC11-SN627_0109_AD0CNFABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11R-A115-07 15bad71d-3031-413b-9e8d-6426ae5dfbea RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_447884.TCGA-A1-A0SD-01A-11R-A115-07.110620_UNC11-SN627_0109_AD0CNFABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11R-A115-07 15bad71d-3031-413b-9e8d-6426ae5dfbea RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_447940.TCGA-A1-A0SD-01A-11R-A115-07.110620_UNC11-SN627_0109_AD0CNFABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-01A TCGA-A1-A0SD-01A-11W-A12T-09 9fa284f6-383f-41b5-9cf3-0c79aecf1a59 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-10A TCGA-A1-A0SD-10A-01D-A10Z-02 07d1e009-4228-46d6-936c-191e33a70fbc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-10A TCGA-A1-A0SD-10A-01D-A110-09 44ee7757-ca5e-4616-a3fc-5e30c8b6088c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-10A TCGA-A1-A0SD-10A-01D-A110-09 44ee7757-ca5e-4616-a3fc-5e30c8b6088c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-10A TCGA-A1-A0SD-10A-01D-A113-01 fdcb751a-8d24-4b5b-919c-28cdbe8a5cd1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-10A TCGA-A1-A0SD-10A-01D-A113-01 fdcb751a-8d24-4b5b-919c-28cdbe8a5cd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G11_735166.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-A1-A0SD TCGA-A1-A0SD-10A TCGA-A1-A0SD-10A-01D-A113-01 fdcb751a-8d24-4b5b-919c-28cdbe8a5cd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G11_735166.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-10A TCGA-A1-A0SD-10A-01D-A113-01 fdcb751a-8d24-4b5b-919c-28cdbe8a5cd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G11_735166.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-10A TCGA-A1-A0SD-10A-01D-A113-01 fdcb751a-8d24-4b5b-919c-28cdbe8a5cd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G11_735166.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-10A TCGA-A1-A0SD-10A-01D-A113-01 fdcb751a-8d24-4b5b-919c-28cdbe8a5cd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G11_735166.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-10A TCGA-A1-A0SD-10A-01D-A113-01 fdcb751a-8d24-4b5b-919c-28cdbe8a5cd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G11_735166.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-10A TCGA-A1-A0SD-10A-01D-A113-01 fdcb751a-8d24-4b5b-919c-28cdbe8a5cd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G11_735166.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-10A TCGA-A1-A0SD-10A-01D-A113-01 fdcb751a-8d24-4b5b-919c-28cdbe8a5cd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G11_735166.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-A1-A0SD TCGA-A1-A0SD-10A TCGA-A1-A0SD-10A-01W-A12U-09 903d650a-08bf-4ef4-885e-c183f88c1d57 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11D-A086-02 ebf3e73f-41a0-4ca5-b608-fe1c629e16de Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11D-A087-01 401a4b1d-1f1d-4d3c-b330-02fb9ba433d3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11D-A087-01 401a4b1d-1f1d-4d3c-b330-02fb9ba433d3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D12_698000.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11D-A087-01 401a4b1d-1f1d-4d3c-b330-02fb9ba433d3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D12_698000.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11D-A087-01 401a4b1d-1f1d-4d3c-b330-02fb9ba433d3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D12_698000.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11D-A087-01 401a4b1d-1f1d-4d3c-b330-02fb9ba433d3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D12_698000.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11D-A087-01 401a4b1d-1f1d-4d3c-b330-02fb9ba433d3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D12_698000.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11D-A087-01 401a4b1d-1f1d-4d3c-b330-02fb9ba433d3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D12_698000.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11D-A087-01 401a4b1d-1f1d-4d3c-b330-02fb9ba433d3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D12_698000.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11D-A087-01 401a4b1d-1f1d-4d3c-b330-02fb9ba433d3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D12_698000.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11D-A088-05 64c834ff-4eee-4459-9950-309ad4bb2f8a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11D-A099-09 0539776c-3943-41d0-972c-8dc833a603e5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11D-A099-09 0539776c-3943-41d0-972c-8dc833a603e5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11D-A099-09 0539776c-3943-41d0-972c-8dc833a603e5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11D-A10P-05 4730d891-5acf-420a-a0b2-26769bacff76 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11D-A10P-05 4730d891-5acf-420a-a0b2-26769bacff76 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791006_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11D-A10P-05 4730d891-5acf-420a-a0b2-26769bacff76 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791006_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11D-A10P-05 4730d891-5acf-420a-a0b2-26769bacff76 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-A1-A0SE-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11D-A10P-05 4730d891-5acf-420a-a0b2-26769bacff76 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-A1-A0SE-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11R-A084-07 a998e0ce-9248-460f-aabc-2dad452a1ff9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11R-A084-07 a998e0ce-9248-460f-aabc-2dad452a1ff9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012602_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11R-A084-07 a998e0ce-9248-460f-aabc-2dad452a1ff9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012602_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11R-A084-07 a998e0ce-9248-460f-aabc-2dad452a1ff9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012602_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11R-A084-07 a998e0ce-9248-460f-aabc-2dad452a1ff9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_444248.TCGA-A1-A0SE-01A-11R-A084-07.110315_UNC9-SN296_0159_AC008BABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11R-A084-07 a998e0ce-9248-460f-aabc-2dad452a1ff9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_444260.TCGA-A1-A0SE-01A-11R-A084-07.110315_UNC9-SN296_0159_AC008BABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11R-A084-07 a998e0ce-9248-460f-aabc-2dad452a1ff9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_444440.TCGA-A1-A0SE-01A-11R-A084-07.110315_UNC9-SN296_0159_AC008BABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11R-A085-13 aae3076d-2ccd-4aba-99a8-365e6425c506 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11R-A085-13 aae3076d-2ccd-4aba-99a8-365e6425c506 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A1-A0SE-01A-11R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11R-A085-13 aae3076d-2ccd-4aba-99a8-365e6425c506 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A1-A0SE-01A-11R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11W-A097-09 47558fe7-9ee6-41b8-a76e-b989f102eea9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-01A TCGA-A1-A0SE-01A-11X-A098-09 51bb9288-6b53-40ee-86b7-7fc06de7c35f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-10A TCGA-A1-A0SE-10A-03D-A086-02 674406d6-3c3b-4f4d-a296-4965b07f13d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-10A TCGA-A1-A0SE-10A-03D-A087-01 8dc08804-7175-4bd2-932e-8a22ee007fc1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-10A TCGA-A1-A0SE-10A-03D-A087-01 8dc08804-7175-4bd2-932e-8a22ee007fc1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E04_698126.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A1-A0SE TCGA-A1-A0SE-10A TCGA-A1-A0SE-10A-03D-A087-01 8dc08804-7175-4bd2-932e-8a22ee007fc1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E04_698126.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-10A TCGA-A1-A0SE-10A-03D-A087-01 8dc08804-7175-4bd2-932e-8a22ee007fc1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E04_698126.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-10A TCGA-A1-A0SE-10A-03D-A087-01 8dc08804-7175-4bd2-932e-8a22ee007fc1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E04_698126.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-10A TCGA-A1-A0SE-10A-03D-A087-01 8dc08804-7175-4bd2-932e-8a22ee007fc1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E04_698126.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-10A TCGA-A1-A0SE-10A-03D-A087-01 8dc08804-7175-4bd2-932e-8a22ee007fc1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E04_698126.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-10A TCGA-A1-A0SE-10A-03D-A087-01 8dc08804-7175-4bd2-932e-8a22ee007fc1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E04_698126.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-10A TCGA-A1-A0SE-10A-03D-A087-01 8dc08804-7175-4bd2-932e-8a22ee007fc1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E04_698126.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-10A TCGA-A1-A0SE-10A-03D-A099-09 880b9d9f-40bf-4a8a-bfb6-378842c4fb97 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-10A TCGA-A1-A0SE-10A-03D-A099-09 880b9d9f-40bf-4a8a-bfb6-378842c4fb97 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-10A TCGA-A1-A0SE-10A-03D-A099-09 880b9d9f-40bf-4a8a-bfb6-378842c4fb97 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-10A TCGA-A1-A0SE-10A-03W-A097-09 8fbb67f4-4d38-4a37-93e0-55ae3ed6872b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SE TCGA-A1-A0SE-10A TCGA-A1-A0SE-10A-03X-A098-09 ab075403-297e-481a-8d0c-4f18a129a76c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SF TCGA-A1-A0SF-01A TCGA-A1-A0SF-01A-11D-A140-02 aee2be50-f251-4db6-9e26-08b1f7c4924a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SF TCGA-A1-A0SF-01A TCGA-A1-A0SF-01A-11D-A141-01 ea71ebc6-d742-4a38-8b9a-1e8b63f43b38 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SF TCGA-A1-A0SF-01A TCGA-A1-A0SF-01A-11D-A141-01 ea71ebc6-d742-4a38-8b9a-1e8b63f43b38 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A01_778052.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-A1-A0SF TCGA-A1-A0SF-01A TCGA-A1-A0SF-01A-11D-A141-01 ea71ebc6-d742-4a38-8b9a-1e8b63f43b38 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A01_778052.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SF TCGA-A1-A0SF-01A TCGA-A1-A0SF-01A-11D-A141-01 ea71ebc6-d742-4a38-8b9a-1e8b63f43b38 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A01_778052.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SF TCGA-A1-A0SF-01A TCGA-A1-A0SF-01A-11D-A141-01 ea71ebc6-d742-4a38-8b9a-1e8b63f43b38 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A01_778052.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SF TCGA-A1-A0SF-01A TCGA-A1-A0SF-01A-11D-A141-01 ea71ebc6-d742-4a38-8b9a-1e8b63f43b38 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A01_778052.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SF TCGA-A1-A0SF-01A TCGA-A1-A0SF-01A-11D-A141-01 ea71ebc6-d742-4a38-8b9a-1e8b63f43b38 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A01_778052.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SF TCGA-A1-A0SF-01A TCGA-A1-A0SF-01A-11D-A141-01 ea71ebc6-d742-4a38-8b9a-1e8b63f43b38 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SF TCGA-A1-A0SF-01A TCGA-A1-A0SF-01A-11R-A143-13 0d131378-3926-48b1-9a44-d2394a888ad1 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A1-A0SF-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-A1-A0SF TCGA-A1-A0SF-01A TCGA-A1-A0SF-01A-11R-A143-13 0d131378-3926-48b1-9a44-d2394a888ad1 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SF TCGA-A1-A0SF-10B TCGA-A1-A0SF-10B-01D-A141-01 b45e0ef1-4ca8-4b14-80e1-10489a77699f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SF TCGA-A1-A0SF-10B TCGA-A1-A0SF-10B-01D-A141-01 b45e0ef1-4ca8-4b14-80e1-10489a77699f SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SG TCGA-A1-A0SG-01A TCGA-A1-A0SG-01A-11D-A141-01 75937dba-a780-42c5-91db-c7ae7a4b8c41 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SG TCGA-A1-A0SG-01A TCGA-A1-A0SG-01A-11D-A141-01 75937dba-a780-42c5-91db-c7ae7a4b8c41 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SG TCGA-A1-A0SG-01A TCGA-A1-A0SG-01A-11R-A143-13 75f56c46-49c6-4e19-a9da-c8ce125053c0 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A1-A0SG-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-A1-A0SG TCGA-A1-A0SG-01A TCGA-A1-A0SG-01A-11R-A143-13 75f56c46-49c6-4e19-a9da-c8ce125053c0 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-01A TCGA-A1-A0SH-01A-11D-A086-02 0f91dce6-ff18-4f0d-b1d1-72b5417656d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-01A TCGA-A1-A0SH-01A-11D-A087-01 43ba3339-996b-4477-878f-4a62c471ab5f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-01A TCGA-A1-A0SH-01A-11D-A087-01 43ba3339-996b-4477-878f-4a62c471ab5f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G04_698124.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A1-A0SH TCGA-A1-A0SH-01A TCGA-A1-A0SH-01A-11D-A087-01 43ba3339-996b-4477-878f-4a62c471ab5f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G04_698124.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-01A TCGA-A1-A0SH-01A-11D-A087-01 43ba3339-996b-4477-878f-4a62c471ab5f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G04_698124.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-01A TCGA-A1-A0SH-01A-11D-A087-01 43ba3339-996b-4477-878f-4a62c471ab5f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G04_698124.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-01A TCGA-A1-A0SH-01A-11D-A087-01 43ba3339-996b-4477-878f-4a62c471ab5f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G04_698124.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-01A TCGA-A1-A0SH-01A-11D-A087-01 43ba3339-996b-4477-878f-4a62c471ab5f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G04_698124.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-01A TCGA-A1-A0SH-01A-11D-A087-01 43ba3339-996b-4477-878f-4a62c471ab5f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G04_698124.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-01A TCGA-A1-A0SH-01A-11D-A087-01 43ba3339-996b-4477-878f-4a62c471ab5f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G04_698124.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-01A TCGA-A1-A0SH-01A-11D-A088-05 e70113bb-9793-4d46-90ae-81ffb9c0c644 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-01A TCGA-A1-A0SH-01A-11D-A099-09 473d6ae4-162a-4136-b44f-fad42529a31a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-01A TCGA-A1-A0SH-01A-11D-A099-09 473d6ae4-162a-4136-b44f-fad42529a31a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-01A TCGA-A1-A0SH-01A-11D-A099-09 473d6ae4-162a-4136-b44f-fad42529a31a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-01A TCGA-A1-A0SH-01A-11D-A10P-05 4aa99ee6-e2e0-4477-aebd-0d7314a6087d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-01A TCGA-A1-A0SH-01A-11D-A10P-05 4aa99ee6-e2e0-4477-aebd-0d7314a6087d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791004_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-01A TCGA-A1-A0SH-01A-11D-A10P-05 4aa99ee6-e2e0-4477-aebd-0d7314a6087d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791004_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-01A TCGA-A1-A0SH-01A-11D-A10P-05 4aa99ee6-e2e0-4477-aebd-0d7314a6087d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-A1-A0SH-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-01A TCGA-A1-A0SH-01A-11D-A10P-05 4aa99ee6-e2e0-4477-aebd-0d7314a6087d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-A1-A0SH-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-01A TCGA-A1-A0SH-01A-11R-A084-07 dce3de3e-f851-4859-a208-72e65d36ab3d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-01A TCGA-A1-A0SH-01A-11R-A084-07 dce3de3e-f851-4859-a208-72e65d36ab3d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012604_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-A1-A0SH TCGA-A1-A0SH-01A TCGA-A1-A0SH-01A-11R-A084-07 dce3de3e-f851-4859-a208-72e65d36ab3d Expression-Genes AgilentG4502A_07_3 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477027.TCGA-A1-A0SH-01A-11R-A084-07.110406_UNC13-SN749_0049_AC008AABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-01A TCGA-A1-A0SH-01A-11R-A084-07 dce3de3e-f851-4859-a208-72e65d36ab3d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477030.TCGA-A1-A0SH-01A-11R-A084-07.110406_UNC13-SN749_0049_AC008AABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-01A TCGA-A1-A0SH-01A-11R-A084-07 dce3de3e-f851-4859-a208-72e65d36ab3d RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-01A TCGA-A1-A0SH-01A-11X-A098-09 b3bf823d-7318-4991-bd9d-a08b65f39908 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-10A TCGA-A1-A0SH-10A-03D-A086-02 ff19d2d0-4ae7-4460-b623-eb294d5e4b71 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-10A TCGA-A1-A0SH-10A-03D-A087-01 6d8a7afa-527a-417a-9c24-3e8f8f54b28c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-10A TCGA-A1-A0SH-10A-03D-A087-01 6d8a7afa-527a-417a-9c24-3e8f8f54b28c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E07_698136.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A1-A0SH TCGA-A1-A0SH-10A TCGA-A1-A0SH-10A-03D-A087-01 6d8a7afa-527a-417a-9c24-3e8f8f54b28c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E07_698136.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-10A TCGA-A1-A0SH-10A-03D-A087-01 6d8a7afa-527a-417a-9c24-3e8f8f54b28c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E07_698136.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-10A TCGA-A1-A0SH-10A-03D-A087-01 6d8a7afa-527a-417a-9c24-3e8f8f54b28c SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E07_698136.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-10A TCGA-A1-A0SH-10A-03D-A099-09 7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-10A TCGA-A1-A0SH-10A-03D-A099-09 7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-10A TCGA-A1-A0SH-10A-03D-A099-09 7df4bbf4-7ac5-4fd3-b0b9-ca6e49674cfd Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-10A TCGA-A1-A0SH-10A-03W-A097-09 7178fb62-1f37-4c09-95f5-42472257bfbe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SH TCGA-A1-A0SH-10A TCGA-A1-A0SH-10A-03X-A098-09 3f20606e-ec87-4c79-a8cb-3c77e4e6ebe4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SI TCGA-A1-A0SI-01A TCGA-A1-A0SI-01A-11D-A140-02 967f4f97-39f0-4e17-b27c-c1c4e30a6674 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SI TCGA-A1-A0SI-01A TCGA-A1-A0SI-01A-11D-A141-01 35d22d6b-6b95-48bc-bc2f-fe4495ff188e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SI TCGA-A1-A0SI-01A TCGA-A1-A0SI-01A-11D-A141-01 35d22d6b-6b95-48bc-bc2f-fe4495ff188e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A09_778028.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-A1-A0SI TCGA-A1-A0SI-01A TCGA-A1-A0SI-01A-11D-A141-01 35d22d6b-6b95-48bc-bc2f-fe4495ff188e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A09_778028.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SI TCGA-A1-A0SI-01A TCGA-A1-A0SI-01A-11D-A141-01 35d22d6b-6b95-48bc-bc2f-fe4495ff188e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A09_778028.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SI TCGA-A1-A0SI-01A TCGA-A1-A0SI-01A-11D-A141-01 35d22d6b-6b95-48bc-bc2f-fe4495ff188e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A09_778028.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SI TCGA-A1-A0SI-01A TCGA-A1-A0SI-01A-11D-A141-01 35d22d6b-6b95-48bc-bc2f-fe4495ff188e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A09_778028.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SI TCGA-A1-A0SI-01A TCGA-A1-A0SI-01A-11D-A141-01 35d22d6b-6b95-48bc-bc2f-fe4495ff188e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A09_778028.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SI TCGA-A1-A0SI-01A TCGA-A1-A0SI-01A-11D-A141-01 35d22d6b-6b95-48bc-bc2f-fe4495ff188e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A09_778028.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SI TCGA-A1-A0SI-01A TCGA-A1-A0SI-01A-11D-A141-01 35d22d6b-6b95-48bc-bc2f-fe4495ff188e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A09_778028.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-A1-A0SI TCGA-A1-A0SI-01A TCGA-A1-A0SI-01A-11D-A142-09 e218c272-a7e1-4bc9-b8c5-d2d1c903550f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SI TCGA-A1-A0SI-01A TCGA-A1-A0SI-01A-11D-A145-05 6da97183-f8eb-4151-8f73-5d5f229977a3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SI TCGA-A1-A0SI-01A TCGA-A1-A0SI-01A-11D-A145-05 6da97183-f8eb-4151-8f73-5d5f229977a3 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-A1-A0SI-01A-11D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-A1-A0SI TCGA-A1-A0SI-01A TCGA-A1-A0SI-01A-11D-A145-05 6da97183-f8eb-4151-8f73-5d5f229977a3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-A1-A0SI-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-A1-A0SI TCGA-A1-A0SI-01A TCGA-A1-A0SI-01A-11R-A143-13 98b6c38c-6bf5-4776-b25a-1db7315e3451 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SI TCGA-A1-A0SI-01A TCGA-A1-A0SI-01A-11R-A143-13 98b6c38c-6bf5-4776-b25a-1db7315e3451 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A1-A0SI-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-A1-A0SI TCGA-A1-A0SI-01A TCGA-A1-A0SI-01A-11R-A143-13 98b6c38c-6bf5-4776-b25a-1db7315e3451 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A1-A0SI-01A-11R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-A1-A0SI TCGA-A1-A0SI-01A TCGA-A1-A0SI-01A-11R-A144-07 44d93b9f-95d6-4382-9590-f6e7bdda65c5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SI TCGA-A1-A0SI-01A TCGA-A1-A0SI-01A-11R-A144-07 44d93b9f-95d6-4382-9590-f6e7bdda65c5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407768.TCGA-A1-A0SI-01A-11R-A144-07.110802_UNC16-SN851_0067_BB07W5ABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SI TCGA-A1-A0SI-01A TCGA-A1-A0SI-01A-11R-A144-07 44d93b9f-95d6-4382-9590-f6e7bdda65c5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407833.TCGA-A1-A0SI-01A-11R-A144-07.110802_UNC16-SN851_0067_BB07W5ABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SI TCGA-A1-A0SI-01A TCGA-A1-A0SI-01A-11R-A144-07 44d93b9f-95d6-4382-9590-f6e7bdda65c5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407854.TCGA-A1-A0SI-01A-11R-A144-07.110802_UNC16-SN851_0067_BB07W5ABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SI TCGA-A1-A0SI-01A TCGA-A1-A0SI-01A-11W-A187-09 7bc5e8c4-9457-4b88-919f-2696460ca7f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SI TCGA-A1-A0SI-10B TCGA-A1-A0SI-10B-01D-A140-02 768352cf-476d-4977-ad80-a41b36a521b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SI TCGA-A1-A0SI-10B TCGA-A1-A0SI-10B-01D-A141-01 195e0365-cea7-4985-b55d-104fe758c9be Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SI TCGA-A1-A0SI-10B TCGA-A1-A0SI-10B-01D-A141-01 195e0365-cea7-4985-b55d-104fe758c9be SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C08_778092.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-A1-A0SI TCGA-A1-A0SI-10B TCGA-A1-A0SI-10B-01D-A141-01 195e0365-cea7-4985-b55d-104fe758c9be SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C08_778092.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SI TCGA-A1-A0SI-10B TCGA-A1-A0SI-10B-01D-A141-01 195e0365-cea7-4985-b55d-104fe758c9be SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C08_778092.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SI TCGA-A1-A0SI-10B TCGA-A1-A0SI-10B-01D-A141-01 195e0365-cea7-4985-b55d-104fe758c9be SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C08_778092.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SI TCGA-A1-A0SI-10B TCGA-A1-A0SI-10B-01D-A141-01 195e0365-cea7-4985-b55d-104fe758c9be SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C08_778092.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SI TCGA-A1-A0SI-10B TCGA-A1-A0SI-10B-01D-A141-01 195e0365-cea7-4985-b55d-104fe758c9be SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C08_778092.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SI TCGA-A1-A0SI-10B TCGA-A1-A0SI-10B-01D-A141-01 195e0365-cea7-4985-b55d-104fe758c9be SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C08_778092.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SI TCGA-A1-A0SI-10B TCGA-A1-A0SI-10B-01D-A141-01 195e0365-cea7-4985-b55d-104fe758c9be SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C08_778092.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-A1-A0SI TCGA-A1-A0SI-10B TCGA-A1-A0SI-10B-01D-A142-09 fbcab9dc-4a6b-4928-9459-699c9932e3e1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SI TCGA-A1-A0SI-10B TCGA-A1-A0SI-10B-01W-A187-09 2d735af4-a18c-4171-a319-05a42dc666be Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11D-A086-02 ac071d7a-2e8f-4a04-ab1c-97ef9a54e18a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11D-A087-01 c9020c2b-9c08-45c6-b13d-1bcb9f9d451f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11D-A087-01 c9020c2b-9c08-45c6-b13d-1bcb9f9d451f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E11_698020.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11D-A087-01 c9020c2b-9c08-45c6-b13d-1bcb9f9d451f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E11_698020.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11D-A087-01 c9020c2b-9c08-45c6-b13d-1bcb9f9d451f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E11_698020.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11D-A087-01 c9020c2b-9c08-45c6-b13d-1bcb9f9d451f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E11_698020.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11D-A087-01 c9020c2b-9c08-45c6-b13d-1bcb9f9d451f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E11_698020.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11D-A087-01 c9020c2b-9c08-45c6-b13d-1bcb9f9d451f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E11_698020.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11D-A087-01 c9020c2b-9c08-45c6-b13d-1bcb9f9d451f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E11_698020.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11D-A087-01 c9020c2b-9c08-45c6-b13d-1bcb9f9d451f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E11_698020.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11D-A088-05 dedf769f-4129-4d52-8cfb-9a5f48e2d90d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11D-A099-09 a55c6a44-c0f5-4300-8df4-4a70befe2d3b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11D-A099-09 a55c6a44-c0f5-4300-8df4-4a70befe2d3b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11D-A099-09 a55c6a44-c0f5-4300-8df4-4a70befe2d3b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11D-A10P-05 60ad70e9-86bb-4c55-9994-8c571ec19208 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11D-A10P-05 60ad70e9-86bb-4c55-9994-8c571ec19208 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791006_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11D-A10P-05 60ad70e9-86bb-4c55-9994-8c571ec19208 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791006_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11D-A10P-05 60ad70e9-86bb-4c55-9994-8c571ec19208 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-A1-A0SJ-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11D-A10P-05 60ad70e9-86bb-4c55-9994-8c571ec19208 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-A1-A0SJ-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11R-A084-07 61017170-a36a-4ce9-9b8e-324755b88dd7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11R-A084-07 61017170-a36a-4ce9-9b8e-324755b88dd7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012620_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11R-A084-07 61017170-a36a-4ce9-9b8e-324755b88dd7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012620_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11R-A084-07 61017170-a36a-4ce9-9b8e-324755b88dd7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012620_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11R-A084-07 61017170-a36a-4ce9-9b8e-324755b88dd7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477012.TCGA-A1-A0SJ-01A-11R-A084-07.110406_UNC13-SN749_0049_AC008AABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11R-A084-07 61017170-a36a-4ce9-9b8e-324755b88dd7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477013.TCGA-A1-A0SJ-01A-11R-A084-07.110406_UNC13-SN749_0049_AC008AABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11R-A084-07 61017170-a36a-4ce9-9b8e-324755b88dd7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477100.TCGA-A1-A0SJ-01A-11R-A084-07.110406_UNC13-SN749_0049_AC008AABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11R-A085-13 999ce02c-909d-4f1a-91cd-e579ae5337c5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11R-A085-13 999ce02c-909d-4f1a-91cd-e579ae5337c5 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A1-A0SJ-01A-11R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11R-A085-13 999ce02c-909d-4f1a-91cd-e579ae5337c5 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A1-A0SJ-01A-11R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11W-A097-09 b4c16213-572a-4587-b362-0aa6cc706f7d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-01A TCGA-A1-A0SJ-01A-11X-A098-09 345ee485-9ed6-4da0-b3b7-579ac69a4d5e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-10A TCGA-A1-A0SJ-10A-02D-A086-02 70f10a94-96be-4193-b47d-4f5037abc753 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-10A TCGA-A1-A0SJ-10A-02D-A087-01 d295985c-acf4-4c56-9022-cf7e8ad1b19b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-10A TCGA-A1-A0SJ-10A-02D-A087-01 d295985c-acf4-4c56-9022-cf7e8ad1b19b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C11_698072.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A1-A0SJ TCGA-A1-A0SJ-10A TCGA-A1-A0SJ-10A-02D-A087-01 d295985c-acf4-4c56-9022-cf7e8ad1b19b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C11_698072.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-10A TCGA-A1-A0SJ-10A-02D-A087-01 d295985c-acf4-4c56-9022-cf7e8ad1b19b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C11_698072.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-10A TCGA-A1-A0SJ-10A-02D-A087-01 d295985c-acf4-4c56-9022-cf7e8ad1b19b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C11_698072.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-10A TCGA-A1-A0SJ-10A-02D-A087-01 d295985c-acf4-4c56-9022-cf7e8ad1b19b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C11_698072.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-10A TCGA-A1-A0SJ-10A-02D-A087-01 d295985c-acf4-4c56-9022-cf7e8ad1b19b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C11_698072.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-10A TCGA-A1-A0SJ-10A-02D-A087-01 d295985c-acf4-4c56-9022-cf7e8ad1b19b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C11_698072.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-10A TCGA-A1-A0SJ-10A-02D-A087-01 d295985c-acf4-4c56-9022-cf7e8ad1b19b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C11_698072.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-10A TCGA-A1-A0SJ-10A-02D-A099-09 aaf63cff-b2e2-4f9b-868e-e7a1637cc14b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-10A TCGA-A1-A0SJ-10A-02D-A099-09 aaf63cff-b2e2-4f9b-868e-e7a1637cc14b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-10A TCGA-A1-A0SJ-10A-02D-A099-09 aaf63cff-b2e2-4f9b-868e-e7a1637cc14b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-10A TCGA-A1-A0SJ-10A-02W-A097-09 856216bf-4c30-40e9-8b80-aadd10f28c7a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SJ TCGA-A1-A0SJ-10A TCGA-A1-A0SJ-10A-02X-A098-09 a22cdbbb-ca96-4131-861a-5dcd3db1e3ca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12D-A086-02 5ed8cea4-bcc7-4d28-bd8c-d1f718efd4c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12D-A087-01 c76440c7-2213-4933-b79d-d832910334ea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12D-A087-01 c76440c7-2213-4933-b79d-d832910334ea SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D01_698044.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12D-A087-01 c76440c7-2213-4933-b79d-d832910334ea SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D01_698044.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12D-A087-01 c76440c7-2213-4933-b79d-d832910334ea SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D01_698044.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12D-A087-01 c76440c7-2213-4933-b79d-d832910334ea SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D01_698044.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12D-A087-01 c76440c7-2213-4933-b79d-d832910334ea SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D01_698044.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12D-A087-01 c76440c7-2213-4933-b79d-d832910334ea SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D01_698044.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12D-A087-01 c76440c7-2213-4933-b79d-d832910334ea SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D01_698044.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12D-A087-01 c76440c7-2213-4933-b79d-d832910334ea SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D01_698044.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12D-A088-05 6a36b88e-5088-4ba7-8dcb-42f5b41519c3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12D-A099-09 d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12D-A099-09 d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12D-A10P-05 63732c91-34c2-48ba-a0f4-c1e7a3971596 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12D-A10P-05 63732c91-34c2-48ba-a0f4-c1e7a3971596 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791010_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12D-A10P-05 63732c91-34c2-48ba-a0f4-c1e7a3971596 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791010_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12D-A10P-05 63732c91-34c2-48ba-a0f4-c1e7a3971596 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-A1-A0SK-01A-12D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12D-A10P-05 63732c91-34c2-48ba-a0f4-c1e7a3971596 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-A1-A0SK-01A-12D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12R-A084-07 a63583ca-0ef2-4417-b435-5f3a6951d0c2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12R-A084-07 a63583ca-0ef2-4417-b435-5f3a6951d0c2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012625_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12R-A084-07 a63583ca-0ef2-4417-b435-5f3a6951d0c2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012625_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12R-A084-07 a63583ca-0ef2-4417-b435-5f3a6951d0c2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012625_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12R-A084-07 a63583ca-0ef2-4417-b435-5f3a6951d0c2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442964.TCGA-A1-A0SK-01A-12R-A084-07.110325_UNC13-SN749_0048_BB02DUABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12R-A084-07 a63583ca-0ef2-4417-b435-5f3a6951d0c2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443037.TCGA-A1-A0SK-01A-12R-A084-07.110325_UNC13-SN749_0048_BB02DUABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12R-A084-07 a63583ca-0ef2-4417-b435-5f3a6951d0c2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443144.TCGA-A1-A0SK-01A-12R-A084-07.110325_UNC13-SN749_0048_BB02DUABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12R-A085-13 c503d108-0e15-4161-bfb5-0ee844fb864b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12R-A085-13 c503d108-0e15-4161-bfb5-0ee844fb864b miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A1-A0SK-01A-12R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12R-A085-13 c503d108-0e15-4161-bfb5-0ee844fb864b miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A1-A0SK-01A-12R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12W-A097-09 95ed3f41-c1ef-46b2-9bfa-e8c9cbeb2142 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-01A TCGA-A1-A0SK-01A-12X-A098-09 e1c0e76d-b785-469f-801d-9893444472ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-10A TCGA-A1-A0SK-10A-03D-A086-02 61350775-878f-4d5d-9f95-72e65211184d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-10A TCGA-A1-A0SK-10A-03D-A087-01 57e07d2b-9742-4d6b-ad50-4d3ee9e519aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-10A TCGA-A1-A0SK-10A-03D-A087-01 57e07d2b-9742-4d6b-ad50-4d3ee9e519aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B04_698100.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A1-A0SK TCGA-A1-A0SK-10A TCGA-A1-A0SK-10A-03D-A087-01 57e07d2b-9742-4d6b-ad50-4d3ee9e519aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B04_698100.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-10A TCGA-A1-A0SK-10A-03D-A087-01 57e07d2b-9742-4d6b-ad50-4d3ee9e519aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B04_698100.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-10A TCGA-A1-A0SK-10A-03D-A087-01 57e07d2b-9742-4d6b-ad50-4d3ee9e519aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B04_698100.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-10A TCGA-A1-A0SK-10A-03D-A087-01 57e07d2b-9742-4d6b-ad50-4d3ee9e519aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B04_698100.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-10A TCGA-A1-A0SK-10A-03D-A087-01 57e07d2b-9742-4d6b-ad50-4d3ee9e519aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B04_698100.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-10A TCGA-A1-A0SK-10A-03D-A087-01 57e07d2b-9742-4d6b-ad50-4d3ee9e519aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B04_698100.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-10A TCGA-A1-A0SK-10A-03D-A087-01 57e07d2b-9742-4d6b-ad50-4d3ee9e519aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B04_698100.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-10A TCGA-A1-A0SK-10A-03D-A099-09 2a5384f3-fec7-4265-b104-987f0718574b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-10A TCGA-A1-A0SK-10A-03D-A099-09 2a5384f3-fec7-4265-b104-987f0718574b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-10A TCGA-A1-A0SK-10A-03W-A097-09 0d6fc9c8-de35-49d1-aa80-40ce8215a260 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SK TCGA-A1-A0SK-10A TCGA-A1-A0SK-10A-03X-A098-09 7907bb0b-b043-4af3-bfc9-2160cad43d69 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11D-A086-02 8fc23cf1-4f73-40b5-b7c4-b38308e0d64d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11D-A087-01 17bd1937-b31e-46af-8334-49b86f7a1922 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11D-A087-01 17bd1937-b31e-46af-8334-49b86f7a1922 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F04_697986.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11D-A087-01 17bd1937-b31e-46af-8334-49b86f7a1922 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F04_697986.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11D-A087-01 17bd1937-b31e-46af-8334-49b86f7a1922 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F04_697986.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11D-A087-01 17bd1937-b31e-46af-8334-49b86f7a1922 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F04_697986.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11D-A087-01 17bd1937-b31e-46af-8334-49b86f7a1922 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F04_697986.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11D-A087-01 17bd1937-b31e-46af-8334-49b86f7a1922 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F04_697986.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11D-A087-01 17bd1937-b31e-46af-8334-49b86f7a1922 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F04_697986.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11D-A087-01 17bd1937-b31e-46af-8334-49b86f7a1922 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F04_697986.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11D-A088-05 726b24b5-824c-4c4b-95c5-9ee4f96ca5e3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11D-A099-09 2057b341-ff5c-45ef-83bb-005e29b2e740 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11D-A099-09 2057b341-ff5c-45ef-83bb-005e29b2e740 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11D-A099-09 2057b341-ff5c-45ef-83bb-005e29b2e740 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11D-A10P-05 8b3ee248-3813-4fba-b8a6-ebaa8580cd59 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11D-A10P-05 8b3ee248-3813-4fba-b8a6-ebaa8580cd59 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791006_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11D-A10P-05 8b3ee248-3813-4fba-b8a6-ebaa8580cd59 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791006_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11D-A10P-05 8b3ee248-3813-4fba-b8a6-ebaa8580cd59 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-A1-A0SM-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11D-A10P-05 8b3ee248-3813-4fba-b8a6-ebaa8580cd59 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-A1-A0SM-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11D-A19H-09 546b982f-60d9-43df-9761-09369afbee2d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11R-A084-07 e637db43-508a-4a37-92e4-eea96b35b65b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11R-A084-07 e637db43-508a-4a37-92e4-eea96b35b65b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012631_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11R-A084-07 e637db43-508a-4a37-92e4-eea96b35b65b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012631_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11R-A084-07 e637db43-508a-4a37-92e4-eea96b35b65b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012631_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11R-A084-07 e637db43-508a-4a37-92e4-eea96b35b65b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_695292.TCGA-A1-A0SM-01A-11R-A084-07.110325_UNC13-SN749_0048_BB02DUABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11R-A084-07 e637db43-508a-4a37-92e4-eea96b35b65b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_695295.TCGA-A1-A0SM-01A-11R-A084-07.110325_UNC13-SN749_0048_BB02DUABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11R-A084-07 e637db43-508a-4a37-92e4-eea96b35b65b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_695486.TCGA-A1-A0SM-01A-11R-A084-07.110325_UNC13-SN749_0048_BB02DUABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11R-A085-13 03685a5d-8c4e-424a-a8ab-a4eb7a445231 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11R-A085-13 03685a5d-8c4e-424a-a8ab-a4eb7a445231 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A1-A0SM-01A-11R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11R-A085-13 03685a5d-8c4e-424a-a8ab-a4eb7a445231 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A1-A0SM-01A-11R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11W-A097-09 233bc554-faba-4fb9-a3df-bbb1f314589d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-01A TCGA-A1-A0SM-01A-11X-A098-09 1e51185d-b91b-4b57-9ec8-3552460f8810 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-10A TCGA-A1-A0SM-10A-02D-A086-02 b7d8851e-a6d0-4101-8b83-4ef592cb0d26 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-10A TCGA-A1-A0SM-10A-02D-A087-01 8fd53b0f-3574-49d1-8cf9-632fd7b1e59c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-10A TCGA-A1-A0SM-10A-02D-A087-01 8fd53b0f-3574-49d1-8cf9-632fd7b1e59c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B09_698004.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A1-A0SM TCGA-A1-A0SM-10A TCGA-A1-A0SM-10A-02D-A087-01 8fd53b0f-3574-49d1-8cf9-632fd7b1e59c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B09_698004.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-10A TCGA-A1-A0SM-10A-02D-A087-01 8fd53b0f-3574-49d1-8cf9-632fd7b1e59c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B09_698004.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-10A TCGA-A1-A0SM-10A-02D-A087-01 8fd53b0f-3574-49d1-8cf9-632fd7b1e59c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B09_698004.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-10A TCGA-A1-A0SM-10A-02D-A087-01 8fd53b0f-3574-49d1-8cf9-632fd7b1e59c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B09_698004.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-10A TCGA-A1-A0SM-10A-02D-A087-01 8fd53b0f-3574-49d1-8cf9-632fd7b1e59c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B09_698004.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-10A TCGA-A1-A0SM-10A-02D-A087-01 8fd53b0f-3574-49d1-8cf9-632fd7b1e59c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B09_698004.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-10A TCGA-A1-A0SM-10A-02D-A087-01 8fd53b0f-3574-49d1-8cf9-632fd7b1e59c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B09_698004.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-10A TCGA-A1-A0SM-10A-02D-A099-09 f80d013a-bc2d-498d-898f-c25eff8192a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-10A TCGA-A1-A0SM-10A-02D-A10G-09 e9a6364d-c86f-4656-9089-d0a59a87bd73 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-10A TCGA-A1-A0SM-10A-02D-A10G-09 e9a6364d-c86f-4656-9089-d0a59a87bd73 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-10A TCGA-A1-A0SM-10A-02D-A10G-09 e9a6364d-c86f-4656-9089-d0a59a87bd73 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-10A TCGA-A1-A0SM-10A-02W-A097-09 99ac224e-ad08-4ba8-a486-7668f4142f87 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SM TCGA-A1-A0SM-10A TCGA-A1-A0SM-10A-02X-A098-09 c7f2975b-3e5a-4216-afe8-a911b5203470 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SN TCGA-A1-A0SN-01A TCGA-A1-A0SN-01A-11D-A140-02 51e15598-1238-4403-9389-cfb11f8f26e5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SN TCGA-A1-A0SN-01A TCGA-A1-A0SN-01A-11D-A141-01 2e5d28ee-b288-466f-9d14-0ed674e0c6b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SN TCGA-A1-A0SN-01A TCGA-A1-A0SN-01A-11D-A141-01 2e5d28ee-b288-466f-9d14-0ed674e0c6b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C09_777996.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-A1-A0SN TCGA-A1-A0SN-01A TCGA-A1-A0SN-01A-11D-A141-01 2e5d28ee-b288-466f-9d14-0ed674e0c6b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C09_777996.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SN TCGA-A1-A0SN-01A TCGA-A1-A0SN-01A-11D-A141-01 2e5d28ee-b288-466f-9d14-0ed674e0c6b0 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SN TCGA-A1-A0SN-01A TCGA-A1-A0SN-01A-11R-A143-13 ac205666-a93a-4d87-8aa6-4f799ce58d5b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A1-A0SN-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-A1-A0SN TCGA-A1-A0SN-01A TCGA-A1-A0SN-01A-11R-A143-13 ac205666-a93a-4d87-8aa6-4f799ce58d5b miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G07_778100.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SN TCGA-A1-A0SN-10B TCGA-A1-A0SN-10B-01D-A141-01 109f2585-3778-485a-bdf6-119228ffb1ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G07_778100.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-A1-A0SN TCGA-A1-A0SN-10B TCGA-A1-A0SN-10B-01D-A142-09 14f376b8-4bd0-4931-9ddd-0b4b1cb89137 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SN TCGA-A1-A0SN-10B TCGA-A1-A0SN-10B-01W-A187-09 93079b39-acfe-455b-bec1-fae6dbfcd02f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22D-A086-02 b6849c94-d668-4287-a4ac-a5592fc584bb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22D-A087-01 e3b21b55-af53-4b23-97ef-5be59a3495d8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22D-A087-01 e3b21b55-af53-4b23-97ef-5be59a3495d8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F07_697996.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22D-A087-01 e3b21b55-af53-4b23-97ef-5be59a3495d8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F07_697996.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22D-A087-01 e3b21b55-af53-4b23-97ef-5be59a3495d8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F07_697996.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22D-A087-01 e3b21b55-af53-4b23-97ef-5be59a3495d8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F07_697996.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22D-A087-01 e3b21b55-af53-4b23-97ef-5be59a3495d8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F07_697996.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22D-A087-01 e3b21b55-af53-4b23-97ef-5be59a3495d8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F07_697996.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22D-A087-01 e3b21b55-af53-4b23-97ef-5be59a3495d8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F07_697996.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22D-A087-01 e3b21b55-af53-4b23-97ef-5be59a3495d8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F07_697996.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22D-A088-05 f89e8ae6-ebb4-49ea-a25d-298d3699f176 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22D-A099-09 b3568259-c63c-4eb1-bbc7-af711ddd33db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22D-A099-09 b3568259-c63c-4eb1-bbc7-af711ddd33db Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22D-A099-09 b3568259-c63c-4eb1-bbc7-af711ddd33db Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22D-A10P-05 76e6166b-6a08-454d-9585-8817655f567f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22D-A10P-05 76e6166b-6a08-454d-9585-8817655f567f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791020_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22D-A10P-05 76e6166b-6a08-454d-9585-8817655f567f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791020_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22D-A10P-05 76e6166b-6a08-454d-9585-8817655f567f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-A1-A0SO-01A-22D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22D-A10P-05 76e6166b-6a08-454d-9585-8817655f567f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-A1-A0SO-01A-22D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22R-A084-07 e3b4918d-43c1-4dde-9a92-f9c5cd6e63a0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22R-A084-07 e3b4918d-43c1-4dde-9a92-f9c5cd6e63a0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012586_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22R-A084-07 e3b4918d-43c1-4dde-9a92-f9c5cd6e63a0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012586_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22R-A084-07 e3b4918d-43c1-4dde-9a92-f9c5cd6e63a0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012586_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22R-A084-07 e3b4918d-43c1-4dde-9a92-f9c5cd6e63a0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477653.TCGA-A1-A0SO-01A-22R-A084-07.110325_UNC13-SN749_0047_AB02CWABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22R-A084-07 e3b4918d-43c1-4dde-9a92-f9c5cd6e63a0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477696.TCGA-A1-A0SO-01A-22R-A084-07.110325_UNC13-SN749_0047_AB02CWABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22R-A084-07 e3b4918d-43c1-4dde-9a92-f9c5cd6e63a0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477876.TCGA-A1-A0SO-01A-22R-A084-07.110325_UNC13-SN749_0047_AB02CWABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22R-A085-13 de0ddef7-abc0-414f-9a55-c9d28e02924e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22R-A085-13 de0ddef7-abc0-414f-9a55-c9d28e02924e miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A1-A0SO-01A-22R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22R-A085-13 de0ddef7-abc0-414f-9a55-c9d28e02924e miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A1-A0SO-01A-22R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22W-A097-09 8768a8e1-ec6f-4271-a55b-add73145d87c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-01A TCGA-A1-A0SO-01A-22X-A098-09 244629a6-7776-4f66-be7a-6a42eecdfa1b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-10A TCGA-A1-A0SO-10A-03D-A086-02 6a41dc1d-4752-4167-89a5-3459e212fc71 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-10A TCGA-A1-A0SO-10A-03D-A087-01 3f2f5a9d-1bda-4789-89b5-794c1a4dee6f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-10A TCGA-A1-A0SO-10A-03D-A087-01 3f2f5a9d-1bda-4789-89b5-794c1a4dee6f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B12_698074.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A1-A0SO TCGA-A1-A0SO-10A TCGA-A1-A0SO-10A-03D-A087-01 3f2f5a9d-1bda-4789-89b5-794c1a4dee6f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B12_698074.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-10A TCGA-A1-A0SO-10A-03D-A087-01 3f2f5a9d-1bda-4789-89b5-794c1a4dee6f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B12_698074.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-10A TCGA-A1-A0SO-10A-03D-A087-01 3f2f5a9d-1bda-4789-89b5-794c1a4dee6f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B12_698074.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-10A TCGA-A1-A0SO-10A-03D-A087-01 3f2f5a9d-1bda-4789-89b5-794c1a4dee6f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B12_698074.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-10A TCGA-A1-A0SO-10A-03D-A087-01 3f2f5a9d-1bda-4789-89b5-794c1a4dee6f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B12_698074.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-10A TCGA-A1-A0SO-10A-03D-A087-01 3f2f5a9d-1bda-4789-89b5-794c1a4dee6f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B12_698074.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-10A TCGA-A1-A0SO-10A-03D-A087-01 3f2f5a9d-1bda-4789-89b5-794c1a4dee6f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B12_698074.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-10A TCGA-A1-A0SO-10A-03D-A099-09 17ba8cdb-e35b-4496-a787-d1a7ee7d4a1e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-10A TCGA-A1-A0SO-10A-03D-A099-09 17ba8cdb-e35b-4496-a787-d1a7ee7d4a1e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-10A TCGA-A1-A0SO-10A-03D-A099-09 17ba8cdb-e35b-4496-a787-d1a7ee7d4a1e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-10A TCGA-A1-A0SO-10A-03W-A097-09 ccb3f643-4f05-415d-b1a4-e9b5806ded53 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SO TCGA-A1-A0SO-10A TCGA-A1-A0SO-10A-03X-A098-09 e64b9510-f56f-4c3f-bfb9-98d9d969390a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11D-A086-02 25d2f531-28e7-4931-9e2e-66713e85aed2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11D-A087-01 fda83c5d-bec0-427d-8c6e-e8c06953e58a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11D-A087-01 fda83c5d-bec0-427d-8c6e-e8c06953e58a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D10_698148.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11D-A087-01 fda83c5d-bec0-427d-8c6e-e8c06953e58a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D10_698148.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11D-A087-01 fda83c5d-bec0-427d-8c6e-e8c06953e58a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D10_698148.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11D-A087-01 fda83c5d-bec0-427d-8c6e-e8c06953e58a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D10_698148.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11D-A087-01 fda83c5d-bec0-427d-8c6e-e8c06953e58a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D10_698148.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11D-A087-01 fda83c5d-bec0-427d-8c6e-e8c06953e58a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D10_698148.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11D-A087-01 fda83c5d-bec0-427d-8c6e-e8c06953e58a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D10_698148.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11D-A087-01 fda83c5d-bec0-427d-8c6e-e8c06953e58a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D10_698148.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11D-A088-05 fd558c59-15e7-4476-bff6-aa46c1419aee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11D-A099-09 d3ae9617-b6cd-4d98-b631-39bd4afd3c4e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11D-A10P-05 15cb9414-8b4a-494e-a967-1f5d4b4a04b3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11D-A10P-05 15cb9414-8b4a-494e-a967-1f5d4b4a04b3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791004_R05C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11D-A10P-05 15cb9414-8b4a-494e-a967-1f5d4b4a04b3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791004_R05C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11D-A10P-05 15cb9414-8b4a-494e-a967-1f5d4b4a04b3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-A1-A0SP-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11D-A10P-05 15cb9414-8b4a-494e-a967-1f5d4b4a04b3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-A1-A0SP-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11R-A084-07 f091d050-4847-4d4d-b94c-1efacecdef6b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11R-A084-07 f091d050-4847-4d4d-b94c-1efacecdef6b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012592_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11R-A084-07 f091d050-4847-4d4d-b94c-1efacecdef6b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012592_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11R-A084-07 f091d050-4847-4d4d-b94c-1efacecdef6b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012592_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11R-A084-07 f091d050-4847-4d4d-b94c-1efacecdef6b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477695.TCGA-A1-A0SP-01A-11R-A084-07.110325_UNC13-SN749_0047_AB02CWABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11R-A084-07 f091d050-4847-4d4d-b94c-1efacecdef6b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477702.TCGA-A1-A0SP-01A-11R-A084-07.110325_UNC13-SN749_0047_AB02CWABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11R-A084-07 f091d050-4847-4d4d-b94c-1efacecdef6b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477939.TCGA-A1-A0SP-01A-11R-A084-07.110325_UNC13-SN749_0047_AB02CWABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11R-A085-13 f6d9a175-1be2-4895-be6c-ab9f22620c0f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11R-A085-13 f6d9a175-1be2-4895-be6c-ab9f22620c0f miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A1-A0SP-01A-11R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11R-A085-13 f6d9a175-1be2-4895-be6c-ab9f22620c0f miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A1-A0SP-01A-11R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11W-A097-09 acb90ee6-32ca-459b-b7b4-60cdef5a735e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-01A TCGA-A1-A0SP-01A-11X-A098-09 c3a666e6-0b1c-4605-afea-790465c2fcae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-10A TCGA-A1-A0SP-10A-02D-A086-02 cf9551bb-0555-400c-a32b-617a37c4c76e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-10A TCGA-A1-A0SP-10A-02D-A087-01 1378a5ad-da0c-4065-b9e3-85fc794703ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-10A TCGA-A1-A0SP-10A-02D-A087-01 1378a5ad-da0c-4065-b9e3-85fc794703ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A07_698116.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A1-A0SP TCGA-A1-A0SP-10A TCGA-A1-A0SP-10A-02D-A087-01 1378a5ad-da0c-4065-b9e3-85fc794703ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A07_698116.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-10A TCGA-A1-A0SP-10A-02D-A087-01 1378a5ad-da0c-4065-b9e3-85fc794703ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A07_698116.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-10A TCGA-A1-A0SP-10A-02D-A087-01 1378a5ad-da0c-4065-b9e3-85fc794703ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A07_698116.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-10A TCGA-A1-A0SP-10A-02D-A087-01 1378a5ad-da0c-4065-b9e3-85fc794703ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A07_698116.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-10A TCGA-A1-A0SP-10A-02D-A087-01 1378a5ad-da0c-4065-b9e3-85fc794703ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A07_698116.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-10A TCGA-A1-A0SP-10A-02D-A087-01 1378a5ad-da0c-4065-b9e3-85fc794703ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A07_698116.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-10A TCGA-A1-A0SP-10A-02D-A087-01 1378a5ad-da0c-4065-b9e3-85fc794703ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A07_698116.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-10A TCGA-A1-A0SP-10A-02D-A099-09 a409caa8-efd1-4fc8-9753-fa253e65c58d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-10A TCGA-A1-A0SP-10A-02W-A097-09 bd7104c7-8e42-48bf-afe9-c21b26c9d1b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SP TCGA-A1-A0SP-10A TCGA-A1-A0SP-10A-02X-A098-09 2e3b3f74-db0d-41c4-bcf3-dd4a9732c4c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A1-A0SQ TCGA-A1-A0SQ-01A TCGA-A1-A0SQ-01A-21D-A140-02 4d54af1c-0e32-403a-a732-9f083954d2f0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SQ TCGA-A1-A0SQ-01A TCGA-A1-A0SQ-01A-21D-A141-01 e4c6cf2d-7eac-44e0-b338-a8dbeffc212e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SQ TCGA-A1-A0SQ-01A TCGA-A1-A0SQ-01A-21D-A141-01 e4c6cf2d-7eac-44e0-b338-a8dbeffc212e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D02_778108.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-A1-A0SQ TCGA-A1-A0SQ-01A TCGA-A1-A0SQ-01A-21D-A141-01 e4c6cf2d-7eac-44e0-b338-a8dbeffc212e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D02_778108.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SQ TCGA-A1-A0SQ-01A TCGA-A1-A0SQ-01A-21D-A141-01 e4c6cf2d-7eac-44e0-b338-a8dbeffc212e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D02_778108.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SQ TCGA-A1-A0SQ-01A TCGA-A1-A0SQ-01A-21D-A141-01 e4c6cf2d-7eac-44e0-b338-a8dbeffc212e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D02_778108.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-A1-A0SQ TCGA-A1-A0SQ-01A TCGA-A1-A0SQ-01A-21D-A141-01 e4c6cf2d-7eac-44e0-b338-a8dbeffc212e SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SQ TCGA-A1-A0SQ-01A TCGA-A1-A0SQ-01A-21R-A143-13 e1db1f07-3e8f-4e43-8cb6-74aa225434d4 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A1-A0SQ-01A-21R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-A1-A0SQ TCGA-A1-A0SQ-01A TCGA-A1-A0SQ-01A-21R-A143-13 e1db1f07-3e8f-4e43-8cb6-74aa225434d4 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A1-A0SQ TCGA-A1-A0SQ-10B TCGA-A1-A0SQ-10B-01W-A187-09 88e47f34-a818-4ad9-ab74-66a1fe307ad4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-A1-A0SQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11D-A10X-02 a0d0c5a4-fcfc-4dfc-b496-34ce0a83ad31 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11D-A10Y-09 389dd52b-a7b7-46f0-83ae-308e485466a8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11D-A10Y-09 389dd52b-a7b7-46f0-83ae-308e485466a8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11D-A111-01 5ed8c239-3f5f-409e-9d46-8995ca7fa57d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11D-A111-01 5ed8c239-3f5f-409e-9d46-8995ca7fa57d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F07_735178.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11D-A111-01 5ed8c239-3f5f-409e-9d46-8995ca7fa57d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F07_735178.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11D-A111-01 5ed8c239-3f5f-409e-9d46-8995ca7fa57d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F07_735178.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11D-A111-01 5ed8c239-3f5f-409e-9d46-8995ca7fa57d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F07_735178.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11D-A111-01 5ed8c239-3f5f-409e-9d46-8995ca7fa57d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F07_735178.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11D-A111-01 5ed8c239-3f5f-409e-9d46-8995ca7fa57d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F07_735178.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11D-A111-01 5ed8c239-3f5f-409e-9d46-8995ca7fa57d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F07_735178.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11D-A111-01 5ed8c239-3f5f-409e-9d46-8995ca7fa57d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F07_735178.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11D-A112-05 2883e224-e671-4ae0-8e3c-539be92a7bb0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11D-A112-05 2883e224-e671-4ae0-8e3c-539be92a7bb0 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-A2-A04N-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11D-A112-05 2883e224-e671-4ae0-8e3c-539be92a7bb0 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-A2-A04N-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11D-A112-05 2883e224-e671-4ae0-8e3c-539be92a7bb0 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-A2-A04N-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11R-A114-13 627300bb-08a6-42a6-b943-eacb95a3b723 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11R-A114-13 627300bb-08a6-42a6-b943-eacb95a3b723 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A04N-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11R-A114-13 627300bb-08a6-42a6-b943-eacb95a3b723 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A04N-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11R-A115-07 71b60d53-513c-4da5-b095-39f913bd4f11 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11R-A115-07 71b60d53-513c-4da5-b095-39f913bd4f11 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012757_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11R-A115-07 71b60d53-513c-4da5-b095-39f913bd4f11 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012757_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11R-A115-07 71b60d53-513c-4da5-b095-39f913bd4f11 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012757_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11R-A115-07 71b60d53-513c-4da5-b095-39f913bd4f11 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421147.TCGA-A2-A04N-01A-11R-A115-07.110606_UNC12-SN629_0090_AD0CTGABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11R-A115-07 71b60d53-513c-4da5-b095-39f913bd4f11 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421162.TCGA-A2-A04N-01A-11R-A115-07.110606_UNC12-SN629_0090_AD0CTGABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11R-A115-07 71b60d53-513c-4da5-b095-39f913bd4f11 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421184.TCGA-A2-A04N-01A-11R-A115-07.110606_UNC12-SN629_0090_AD0CTGABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A04N TCGA-A2-A04N-01A TCGA-A2-A04N-01A-11W-A12T-09 183a6a2b-7c74-4729-a86a-793e7bc69bf9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04N TCGA-A2-A04N-10A TCGA-A2-A04N-10A-01D-A10Z-02 c1324b7c-9e34-4b37-baf0-dfb2f4c8d773 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04N TCGA-A2-A04N-10A TCGA-A2-A04N-10A-01D-A110-09 6bc7c00e-9bf1-4d08-b69e-a73942d9afd5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04N TCGA-A2-A04N-10A TCGA-A2-A04N-10A-01D-A110-09 6bc7c00e-9bf1-4d08-b69e-a73942d9afd5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A04N TCGA-A2-A04N-10A TCGA-A2-A04N-10A-01D-A113-01 6fa76b06-c635-4197-ac52-2007c97dbcee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04N TCGA-A2-A04N-10A TCGA-A2-A04N-10A-01D-A113-01 6fa76b06-c635-4197-ac52-2007c97dbcee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E04_735076.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-A2-A04N TCGA-A2-A04N-10A TCGA-A2-A04N-10A-01D-A113-01 6fa76b06-c635-4197-ac52-2007c97dbcee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E04_735076.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04N TCGA-A2-A04N-10A TCGA-A2-A04N-10A-01D-A113-01 6fa76b06-c635-4197-ac52-2007c97dbcee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E04_735076.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04N TCGA-A2-A04N-10A TCGA-A2-A04N-10A-01D-A113-01 6fa76b06-c635-4197-ac52-2007c97dbcee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E04_735076.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04N TCGA-A2-A04N-10A TCGA-A2-A04N-10A-01D-A113-01 6fa76b06-c635-4197-ac52-2007c97dbcee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E04_735076.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04N TCGA-A2-A04N-10A TCGA-A2-A04N-10A-01D-A113-01 6fa76b06-c635-4197-ac52-2007c97dbcee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E04_735076.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04N TCGA-A2-A04N-10A TCGA-A2-A04N-10A-01D-A113-01 6fa76b06-c635-4197-ac52-2007c97dbcee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E04_735076.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04N TCGA-A2-A04N-10A TCGA-A2-A04N-10A-01D-A113-01 6fa76b06-c635-4197-ac52-2007c97dbcee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E04_735076.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-A2-A04N TCGA-A2-A04N-10A TCGA-A2-A04N-10A-01W-A12U-09 147410b9-2b2b-4c54-9397-c8aaa1e7077b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31D-A032-05 dcde399c-76fa-4667-9408-f499babb4fcb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31D-A032-05 dcde399c-76fa-4667-9408-f499babb4fcb DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A2-A04P-01A-31D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31D-A032-05 dcde399c-76fa-4667-9408-f499babb4fcb DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A2-A04P-01A-31D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31D-A032-05 dcde399c-76fa-4667-9408-f499babb4fcb DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A2-A04P-01A-31D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31D-A033-02 7fda56b0-9809-48a1-99ef-efa3ffa5dc02 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31D-A036-01 514e30c9-fe93-4d52-a31f-9e771c71d300 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31D-A036-01 514e30c9-fe93-4d52-a31f-9e771c71d300 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E04_666936.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31D-A036-01 514e30c9-fe93-4d52-a31f-9e771c71d300 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E04_666936.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31D-A036-01 514e30c9-fe93-4d52-a31f-9e771c71d300 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E04_666936.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31D-A036-01 514e30c9-fe93-4d52-a31f-9e771c71d300 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E04_666936.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31D-A036-01 514e30c9-fe93-4d52-a31f-9e771c71d300 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E04_666936.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31D-A036-01 514e30c9-fe93-4d52-a31f-9e771c71d300 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E04_666936.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31D-A036-01 514e30c9-fe93-4d52-a31f-9e771c71d300 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E04_666936.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31D-A036-01 514e30c9-fe93-4d52-a31f-9e771c71d300 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E04_666936.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31D-A044-08 0427ed89-f9d7-47d0-91d2-7b7d60455cc2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31D-A045-09 49bff4cd-1338-4603-be4b-0d2a172e3a1e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31D-A128-09 a85cf239-ff51-46e7-9b88-4c2cb49c66b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31D-A128-09 a85cf239-ff51-46e7-9b88-4c2cb49c66b9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31R-A034-07 357ba9f6-716c-4ef0-8ac8-41977397dbf5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31R-A034-07 357ba9f6-716c-4ef0-8ac8-41977397dbf5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012066_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31R-A034-07 357ba9f6-716c-4ef0-8ac8-41977397dbf5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012066_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31R-A034-07 357ba9f6-716c-4ef0-8ac8-41977397dbf5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012066_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31R-A034-07 357ba9f6-716c-4ef0-8ac8-41977397dbf5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_594300.TCGA-A2-A04P-01A-31R-A034-07.110218_UNC12-SN629_0061_A81DH9ABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31R-A034-07 357ba9f6-716c-4ef0-8ac8-41977397dbf5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_594344.TCGA-A2-A04P-01A-31R-A034-07.110218_UNC12-SN629_0061_A81DH9ABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31R-A034-07 357ba9f6-716c-4ef0-8ac8-41977397dbf5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_594640.TCGA-A2-A04P-01A-31R-A034-07.110218_UNC12-SN629_0061_A81DH9ABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31R-A035-13 987044cb-1108-4bcc-8006-94958fa5582c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31R-A035-13 987044cb-1108-4bcc-8006-94958fa5582c miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A04P-01A-31R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31R-A035-13 987044cb-1108-4bcc-8006-94958fa5582c miRNASeq IlluminaGA_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31X-A048-08 47f3a73a-7d09-470c-9ddb-66613fe14e66 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04P TCGA-A2-A04P-01A TCGA-A2-A04P-01A-31X-A049-09 11d0f31a-53e3-4f3f-ac69-20c8d0958ed2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04P TCGA-A2-A04P-10A TCGA-A2-A04P-10A-01D-A031-02 9e1227f8-1880-4ffa-a8ba-c91e2eadf3e1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04P TCGA-A2-A04P-10A TCGA-A2-A04P-10A-01D-A037-01 5f4175b7-422c-4bed-bd27-3b96739d6f21 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04P TCGA-A2-A04P-10A TCGA-A2-A04P-10A-01D-A037-01 5f4175b7-422c-4bed-bd27-3b96739d6f21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G03_666938.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A04P TCGA-A2-A04P-10A TCGA-A2-A04P-10A-01D-A037-01 5f4175b7-422c-4bed-bd27-3b96739d6f21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G03_666938.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04P TCGA-A2-A04P-10A TCGA-A2-A04P-10A-01D-A037-01 5f4175b7-422c-4bed-bd27-3b96739d6f21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G03_666938.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04P TCGA-A2-A04P-10A TCGA-A2-A04P-10A-01D-A037-01 5f4175b7-422c-4bed-bd27-3b96739d6f21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G03_666938.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04P TCGA-A2-A04P-10A TCGA-A2-A04P-10A-01D-A037-01 5f4175b7-422c-4bed-bd27-3b96739d6f21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G03_666938.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04P TCGA-A2-A04P-10A TCGA-A2-A04P-10A-01D-A037-01 5f4175b7-422c-4bed-bd27-3b96739d6f21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G03_666938.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04P TCGA-A2-A04P-10A TCGA-A2-A04P-10A-01D-A037-01 5f4175b7-422c-4bed-bd27-3b96739d6f21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G03_666938.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04P TCGA-A2-A04P-10A TCGA-A2-A04P-10A-01D-A037-01 5f4175b7-422c-4bed-bd27-3b96739d6f21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G03_666938.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A04P TCGA-A2-A04P-10A TCGA-A2-A04P-10A-01D-A046-08 93c29b27-46fb-4841-861b-ea7239ebb1f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04P TCGA-A2-A04P-10A TCGA-A2-A04P-10A-01D-A047-09 d4619490-e06b-43c5-ad75-97964e5c8e5b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04P TCGA-A2-A04P-10A TCGA-A2-A04P-10A-01D-A128-09 07f6c203-d1cf-4c40-b181-b717d327dade Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04P TCGA-A2-A04P-10A TCGA-A2-A04P-10A-01W-A053-08 92271725-726b-4f2b-9878-dd7350a6777a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04P TCGA-A2-A04P-10A TCGA-A2-A04P-10A-01W-A055-09 aaef2ada-b81d-4e89-8add-a571603d67bb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04P TCGA-A2-A04P-10A TCGA-A2-A04P-10A-01W-A055-09 aaef2ada-b81d-4e89-8add-a571603d67bb Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A04P TCGA-A2-A04P-10A TCGA-A2-A04P-10A-01X-A052-08 8fb2c33e-ee8b-410e-bc1b-98b30765109b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04P TCGA-A2-A04P-10A TCGA-A2-A04P-10A-01X-A054-09 3e68c997-f446-462d-816f-fd7a1a3e567c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21D-A032-05 e5cf4010-1497-4253-be95-1b56686726d0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21D-A032-05 e5cf4010-1497-4253-be95-1b56686726d0 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A2-A04Q-01A-21D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21D-A032-05 e5cf4010-1497-4253-be95-1b56686726d0 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A2-A04Q-01A-21D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21D-A032-05 e5cf4010-1497-4253-be95-1b56686726d0 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A2-A04Q-01A-21D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21D-A033-02 de7474b3-81d9-47ea-8487-796e4a270fd7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21D-A036-01 e69d3fc4-7639-471d-9a76-41e20afd4b62 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21D-A036-01 e69d3fc4-7639-471d-9a76-41e20afd4b62 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E05_666892.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21D-A036-01 e69d3fc4-7639-471d-9a76-41e20afd4b62 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E05_666892.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21D-A036-01 e69d3fc4-7639-471d-9a76-41e20afd4b62 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E05_666892.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21D-A036-01 e69d3fc4-7639-471d-9a76-41e20afd4b62 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E05_666892.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21D-A036-01 e69d3fc4-7639-471d-9a76-41e20afd4b62 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E05_666892.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21D-A036-01 e69d3fc4-7639-471d-9a76-41e20afd4b62 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E05_666892.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21D-A036-01 e69d3fc4-7639-471d-9a76-41e20afd4b62 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E05_666892.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21D-A036-01 e69d3fc4-7639-471d-9a76-41e20afd4b62 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E05_666892.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21D-A044-08 b1a4e12c-0824-4a1c-9225-b5045f8e4c67 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21D-A045-09 c2de6a4c-cfb5-4be4-be03-a0daa40a3125 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21D-A128-09 03b8122d-02d9-4ad0-96ed-001c0d100de0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21R-A034-07 d71e12c1-d92c-4cb6-8244-d100b2ef1c43 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21R-A034-07 d71e12c1-d92c-4cb6-8244-d100b2ef1c43 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012067_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21R-A034-07 d71e12c1-d92c-4cb6-8244-d100b2ef1c43 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012067_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21R-A034-07 d71e12c1-d92c-4cb6-8244-d100b2ef1c43 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012067_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21R-A034-07 d71e12c1-d92c-4cb6-8244-d100b2ef1c43 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_594349.TCGA-A2-A04Q-01A-21R-A034-07.110218_UNC12-SN629_0061_A81DH9ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21R-A034-07 d71e12c1-d92c-4cb6-8244-d100b2ef1c43 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_594367.TCGA-A2-A04Q-01A-21R-A034-07.110218_UNC12-SN629_0061_A81DH9ABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21R-A034-07 d71e12c1-d92c-4cb6-8244-d100b2ef1c43 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_594959.TCGA-A2-A04Q-01A-21R-A034-07.110218_UNC12-SN629_0061_A81DH9ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21R-A035-13 a2577469-ad60-4803-85d2-8acdbd5b62a5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21R-A035-13 a2577469-ad60-4803-85d2-8acdbd5b62a5 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A04Q-01A-21R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21R-A035-13 a2577469-ad60-4803-85d2-8acdbd5b62a5 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A04Q-01A-21R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21W-A050-09 02eb17d4-9e9e-4e32-96b0-90ccdda3f167 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21W-A050-09 02eb17d4-9e9e-4e32-96b0-90ccdda3f167 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21W-A051-08 34d43937-f6e6-45cd-b4b9-2e0fcc3e447d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21X-A048-08 bc87a013-7bef-4bfa-97ee-b66b2714d1af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-01A TCGA-A2-A04Q-01A-21X-A049-09 7e2a4c1e-7ccf-4bd3-84f5-38f7c9b000b8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-10A TCGA-A2-A04Q-10A-01D-A031-02 44258359-6770-4a6e-bbec-0ba9fe476918 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-10A TCGA-A2-A04Q-10A-01D-A037-01 ffc488e6-956c-4252-aa39-5e7f8f5fcf2d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-10A TCGA-A2-A04Q-10A-01D-A037-01 ffc488e6-956c-4252-aa39-5e7f8f5fcf2d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H04_666900.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A04Q TCGA-A2-A04Q-10A TCGA-A2-A04Q-10A-01D-A037-01 ffc488e6-956c-4252-aa39-5e7f8f5fcf2d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H04_666900.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-10A TCGA-A2-A04Q-10A-01D-A037-01 ffc488e6-956c-4252-aa39-5e7f8f5fcf2d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H04_666900.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-10A TCGA-A2-A04Q-10A-01D-A037-01 ffc488e6-956c-4252-aa39-5e7f8f5fcf2d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H04_666900.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-10A TCGA-A2-A04Q-10A-01D-A037-01 ffc488e6-956c-4252-aa39-5e7f8f5fcf2d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H04_666900.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-10A TCGA-A2-A04Q-10A-01D-A037-01 ffc488e6-956c-4252-aa39-5e7f8f5fcf2d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H04_666900.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-10A TCGA-A2-A04Q-10A-01D-A037-01 ffc488e6-956c-4252-aa39-5e7f8f5fcf2d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H04_666900.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-10A TCGA-A2-A04Q-10A-01D-A037-01 ffc488e6-956c-4252-aa39-5e7f8f5fcf2d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H04_666900.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-10A TCGA-A2-A04Q-10A-01D-A046-08 58544f1d-d3e2-4722-92ac-013403701b2c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-10A TCGA-A2-A04Q-10A-01D-A047-09 f7088309-5327-4b5e-b4a9-a341aaabdcae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-10A TCGA-A2-A04Q-10A-01D-A128-09 bcc3ddc8-33e4-4f7c-81e6-8ad2480c62a7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-10A TCGA-A2-A04Q-10A-01W-A053-08 07c27312-ab6a-4431-bc06-14761009e0f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-10A TCGA-A2-A04Q-10A-01W-A055-09 41482042-a515-4e00-985b-f18952dfcbf3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-10A TCGA-A2-A04Q-10A-01W-A055-09 41482042-a515-4e00-985b-f18952dfcbf3 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-10A TCGA-A2-A04Q-10A-01X-A052-08 98e51ee0-064c-46a8-b360-3632fb2b4e7a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Q TCGA-A2-A04Q-10A TCGA-A2-A04Q-10A-01X-A054-09 d331e97c-8444-4995-a34e-e5f2c02fab92 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04R TCGA-A2-A04R-01A TCGA-A2-A04R-01A-41D-A106-02 017d8d0d-3540-40d2-adf7-3bfaf849635d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A04R TCGA-A2-A04R-01A TCGA-A2-A04R-01A-41D-A107-01 ca39b4e5-b1ee-4f4f-a78c-5aaf90044663 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A04R TCGA-A2-A04R-01A TCGA-A2-A04R-01A-41D-A107-01 ca39b4e5-b1ee-4f4f-a78c-5aaf90044663 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C11_731078.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-A2-A04R TCGA-A2-A04R-01A TCGA-A2-A04R-01A-41D-A107-01 ca39b4e5-b1ee-4f4f-a78c-5aaf90044663 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C11_731078.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A04R TCGA-A2-A04R-01A TCGA-A2-A04R-01A-41D-A107-01 ca39b4e5-b1ee-4f4f-a78c-5aaf90044663 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C11_731078.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A04R TCGA-A2-A04R-01A TCGA-A2-A04R-01A-41D-A107-01 ca39b4e5-b1ee-4f4f-a78c-5aaf90044663 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C11_731078.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A04R TCGA-A2-A04R-01A TCGA-A2-A04R-01A-41D-A107-01 ca39b4e5-b1ee-4f4f-a78c-5aaf90044663 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C11_731078.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A04R TCGA-A2-A04R-01A TCGA-A2-A04R-01A-41D-A107-01 ca39b4e5-b1ee-4f4f-a78c-5aaf90044663 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C11_731078.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A04R TCGA-A2-A04R-01A TCGA-A2-A04R-01A-41D-A107-01 ca39b4e5-b1ee-4f4f-a78c-5aaf90044663 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C11_731078.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A04R TCGA-A2-A04R-01A TCGA-A2-A04R-01A-41D-A107-01 ca39b4e5-b1ee-4f4f-a78c-5aaf90044663 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C11_731078.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-A2-A04R TCGA-A2-A04R-01A TCGA-A2-A04R-01A-41D-A10A-05 bed49b2b-3e60-467c-995a-6bd906b92d10 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A04R TCGA-A2-A04R-01A TCGA-A2-A04R-01A-41D-A10A-05 bed49b2b-3e60-467c-995a-6bd906b92d10 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486005_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-A2-A04R TCGA-A2-A04R-01A TCGA-A2-A04R-01A-41D-A10A-05 bed49b2b-3e60-467c-995a-6bd906b92d10 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486005_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-A2-A04R TCGA-A2-A04R-01A TCGA-A2-A04R-01A-41D-A10A-05 bed49b2b-3e60-467c-995a-6bd906b92d10 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-A2-A04R-01A-41D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-A2-A04R TCGA-A2-A04R-01A TCGA-A2-A04R-01A-41D-A10A-05 bed49b2b-3e60-467c-995a-6bd906b92d10 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-A2-A04R-01A-41D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-A2-A04R TCGA-A2-A04R-01A TCGA-A2-A04R-01A-41D-A10G-09 68934750-d11b-4b03-855f-ffd5b0d0d8ba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A04R TCGA-A2-A04R-01A TCGA-A2-A04R-01A-41D-A117-09 1f8e4326-dfc7-4635-a9b7-a9207a392748 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A04R TCGA-A2-A04R-01A TCGA-A2-A04R-01A-41D-A117-09 1f8e4326-dfc7-4635-a9b7-a9207a392748 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A04R TCGA-A2-A04R-01A TCGA-A2-A04R-01A-41D-A117-09 1f8e4326-dfc7-4635-a9b7-a9207a392748 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A04R TCGA-A2-A04R-01A TCGA-A2-A04R-01A-41R-A108-13 78a13023-b745-4a38-866b-df74ba238705 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A04R TCGA-A2-A04R-01A TCGA-A2-A04R-01A-41R-A108-13 78a13023-b745-4a38-866b-df74ba238705 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A04R-01A-41R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A04R TCGA-A2-A04R-01A TCGA-A2-A04R-01A-41R-A108-13 78a13023-b745-4a38-866b-df74ba238705 miRNASeq IlluminaGA_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A04R TCGA-A2-A04R-10B TCGA-A2-A04R-10B-01D-A106-02 e8d3cd7b-7a2e-4d94-a2a7-f119db6ad9ca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A04R TCGA-A2-A04R-10B TCGA-A2-A04R-10B-01D-A107-01 85273b6d-d170-4fbc-84f8-3186153ea7b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A04R TCGA-A2-A04R-10B TCGA-A2-A04R-10B-01D-A107-01 85273b6d-d170-4fbc-84f8-3186153ea7b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D01_730928.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-A2-A04R TCGA-A2-A04R-10B TCGA-A2-A04R-10B-01D-A107-01 85273b6d-d170-4fbc-84f8-3186153ea7b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D01_730928.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A04R TCGA-A2-A04R-10B TCGA-A2-A04R-10B-01D-A107-01 85273b6d-d170-4fbc-84f8-3186153ea7b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D01_730928.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A04R TCGA-A2-A04R-10B TCGA-A2-A04R-10B-01D-A107-01 85273b6d-d170-4fbc-84f8-3186153ea7b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D01_730928.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A04R TCGA-A2-A04R-10B TCGA-A2-A04R-10B-01D-A107-01 85273b6d-d170-4fbc-84f8-3186153ea7b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D01_730928.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A04R TCGA-A2-A04R-10B TCGA-A2-A04R-10B-01D-A107-01 85273b6d-d170-4fbc-84f8-3186153ea7b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D01_730928.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A04R TCGA-A2-A04R-10B TCGA-A2-A04R-10B-01D-A107-01 85273b6d-d170-4fbc-84f8-3186153ea7b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D01_730928.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A04R TCGA-A2-A04R-10B TCGA-A2-A04R-10B-01D-A107-01 85273b6d-d170-4fbc-84f8-3186153ea7b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D01_730928.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-A2-A04R TCGA-A2-A04R-10B TCGA-A2-A04R-10B-01D-A10G-09 6234c5ee-14f2-427c-9ebc-4911da27a849 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A04R TCGA-A2-A04R-10B TCGA-A2-A04R-10B-01D-A10G-09 6234c5ee-14f2-427c-9ebc-4911da27a849 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A04R TCGA-A2-A04R-10B TCGA-A2-A04R-10B-01D-A10G-09 6234c5ee-14f2-427c-9ebc-4911da27a849 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A04R TCGA-A2-A04R-10B TCGA-A2-A04R-10B-01X-A10H-09 7596b3bd-2850-4c00-86b0-f39d2c097120 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A04T TCGA-A2-A04T-01A TCGA-A2-A04T-01A-21D-A032-05 430a4f1f-d437-4e21-aa15-6a229a2ead45 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04T TCGA-A2-A04T-01A TCGA-A2-A04T-01A-21D-A032-05 430a4f1f-d437-4e21-aa15-6a229a2ead45 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A2-A04T-01A-21D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A2-A04T TCGA-A2-A04T-01A TCGA-A2-A04T-01A-21D-A032-05 430a4f1f-d437-4e21-aa15-6a229a2ead45 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A2-A04T-01A-21D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A2-A04T TCGA-A2-A04T-01A TCGA-A2-A04T-01A-21D-A032-05 430a4f1f-d437-4e21-aa15-6a229a2ead45 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A2-A04T-01A-21D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A2-A04T TCGA-A2-A04T-01A TCGA-A2-A04T-01A-21D-A033-02 d079c4ce-779b-4da6-a602-553131c88ab2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04T TCGA-A2-A04T-01A TCGA-A2-A04T-01A-21D-A036-01 9f5d61da-fe30-4975-a3d5-3ba4eab06683 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04T TCGA-A2-A04T-01A TCGA-A2-A04T-01A-21D-A036-01 9f5d61da-fe30-4975-a3d5-3ba4eab06683 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E08_666872.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A04T TCGA-A2-A04T-01A TCGA-A2-A04T-01A-21D-A036-01 9f5d61da-fe30-4975-a3d5-3ba4eab06683 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E08_666872.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04T TCGA-A2-A04T-01A TCGA-A2-A04T-01A-21D-A036-01 9f5d61da-fe30-4975-a3d5-3ba4eab06683 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E08_666872.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04T TCGA-A2-A04T-01A TCGA-A2-A04T-01A-21D-A036-01 9f5d61da-fe30-4975-a3d5-3ba4eab06683 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E08_666872.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04T TCGA-A2-A04T-01A TCGA-A2-A04T-01A-21D-A036-01 9f5d61da-fe30-4975-a3d5-3ba4eab06683 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E08_666872.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04T TCGA-A2-A04T-01A TCGA-A2-A04T-01A-21D-A036-01 9f5d61da-fe30-4975-a3d5-3ba4eab06683 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E08_666872.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04T TCGA-A2-A04T-01A TCGA-A2-A04T-01A-21D-A036-01 9f5d61da-fe30-4975-a3d5-3ba4eab06683 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E08_666872.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04T TCGA-A2-A04T-01A TCGA-A2-A04T-01A-21D-A036-01 9f5d61da-fe30-4975-a3d5-3ba4eab06683 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E08_666872.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A04T TCGA-A2-A04T-01A TCGA-A2-A04T-01A-21D-A044-08 e3b4cf7b-35f4-473c-9918-280caf283183 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04T TCGA-A2-A04T-01A TCGA-A2-A04T-01A-21D-A045-09 6349f739-7a6d-47cf-8a53-e95b96de699c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04T TCGA-A2-A04T-01A TCGA-A2-A04T-01A-21D-A128-09 b752b444-f033-4be4-9d24-e5e80b4181af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04T TCGA-A2-A04T-01A TCGA-A2-A04T-01A-21R-A034-07 79d7a589-60bd-4b4a-89c1-d557fe24c733 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04T TCGA-A2-A04T-01A TCGA-A2-A04T-01A-21R-A034-07 79d7a589-60bd-4b4a-89c1-d557fe24c733 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012027_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A2-A04T TCGA-A2-A04T-01A TCGA-A2-A04T-01A-21R-A034-07 79d7a589-60bd-4b4a-89c1-d557fe24c733 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012027_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A2-A04T TCGA-A2-A04T-01A TCGA-A2-A04T-01A-21R-A034-07 79d7a589-60bd-4b4a-89c1-d557fe24c733 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012027_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A2-A04T TCGA-A2-A04T-01A TCGA-A2-A04T-01A-21R-A034-07 79d7a589-60bd-4b4a-89c1-d557fe24c733 RNASeq IlluminaHiSeq_RNASeq 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1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04T TCGA-A2-A04T-01A TCGA-A2-A04T-01A-21X-A049-09 359d510e-aa49-43a9-a58e-9d05f7306ef9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04T TCGA-A2-A04T-10A TCGA-A2-A04T-10A-01D-A031-02 980f905b-b7e5-4486-aead-ceeffe1b63e8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04T TCGA-A2-A04T-10A TCGA-A2-A04T-10A-01D-A037-01 984db86e-05ab-4b9c-b4d5-0d6f2d38b9f0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04T TCGA-A2-A04T-10A TCGA-A2-A04T-10A-01D-A037-01 984db86e-05ab-4b9c-b4d5-0d6f2d38b9f0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E10_667006.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A04T TCGA-A2-A04T-10A TCGA-A2-A04T-10A-01D-A037-01 984db86e-05ab-4b9c-b4d5-0d6f2d38b9f0 SNP Genome_Wide_SNP_6 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1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04T TCGA-A2-A04T-10A TCGA-A2-A04T-10A-01W-A055-09 9482fe83-a4b1-424a-baf1-8b0f8e40c9b7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04T TCGA-A2-A04T-10A TCGA-A2-A04T-10A-01X-A052-08 1df90023-b36e-4d33-b55b-116dfbd4c9fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04T TCGA-A2-A04T-10A TCGA-A2-A04T-10A-01X-A054-09 11c0f61d-f1ed-48ba-9e81-d2a86aa8b407 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11D-A10X-02 ff3e5b67-0182-4de8-a6a3-815ba5129e5f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11D-A10Y-09 f819433a-44db-4022-abdb-d6123cfa30b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11D-A10Y-09 f819433a-44db-4022-abdb-d6123cfa30b2 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11D-A111-01 544dd94e-abd8-4cca-98cf-d1c2c646f23a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11D-A111-01 544dd94e-abd8-4cca-98cf-d1c2c646f23a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F10_735158.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11D-A111-01 544dd94e-abd8-4cca-98cf-d1c2c646f23a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F10_735158.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11D-A111-01 544dd94e-abd8-4cca-98cf-d1c2c646f23a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F10_735158.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11D-A111-01 544dd94e-abd8-4cca-98cf-d1c2c646f23a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F10_735158.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11D-A111-01 544dd94e-abd8-4cca-98cf-d1c2c646f23a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F10_735158.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11D-A111-01 544dd94e-abd8-4cca-98cf-d1c2c646f23a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F10_735158.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11D-A111-01 544dd94e-abd8-4cca-98cf-d1c2c646f23a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F10_735158.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11D-A111-01 544dd94e-abd8-4cca-98cf-d1c2c646f23a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F10_735158.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11D-A112-05 0d8dc54d-a074-4a99-b80c-d3e21a7c7f9e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11D-A112-05 0d8dc54d-a074-4a99-b80c-d3e21a7c7f9e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-A2-A04U-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11D-A112-05 0d8dc54d-a074-4a99-b80c-d3e21a7c7f9e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-A2-A04U-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11D-A112-05 0d8dc54d-a074-4a99-b80c-d3e21a7c7f9e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-A2-A04U-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11R-A114-13 7465f13b-c9cf-4ae5-af3e-dc6a98d07959 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11R-A114-13 7465f13b-c9cf-4ae5-af3e-dc6a98d07959 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A04U-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11R-A114-13 7465f13b-c9cf-4ae5-af3e-dc6a98d07959 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A04U-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11R-A115-07 4d12d021-3673-4e14-9fd9-033f811f87da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11R-A115-07 4d12d021-3673-4e14-9fd9-033f811f87da Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012769_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11R-A115-07 4d12d021-3673-4e14-9fd9-033f811f87da Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012769_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11R-A115-07 4d12d021-3673-4e14-9fd9-033f811f87da Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012769_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11R-A115-07 4d12d021-3673-4e14-9fd9-033f811f87da RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442167.TCGA-A2-A04U-01A-11R-A115-07.110510_UNC15-SN850_0068_AB0BDUABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11R-A115-07 4d12d021-3673-4e14-9fd9-033f811f87da RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442170.TCGA-A2-A04U-01A-11R-A115-07.110510_UNC15-SN850_0068_AB0BDUABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11R-A115-07 4d12d021-3673-4e14-9fd9-033f811f87da RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442203.TCGA-A2-A04U-01A-11R-A115-07.110510_UNC15-SN850_0068_AB0BDUABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A04U TCGA-A2-A04U-01A TCGA-A2-A04U-01A-11W-A12T-09 f2df2d78-277b-4e7a-8e81-694f42e2b5e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04U TCGA-A2-A04U-10A TCGA-A2-A04U-10A-01D-A10Z-02 346f028f-646c-4f91-a07c-c67b63a0a0a0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04U TCGA-A2-A04U-10A TCGA-A2-A04U-10A-01D-A110-09 85bbbb48-4570-41e6-9e53-b38b2d463cbf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04U TCGA-A2-A04U-10A TCGA-A2-A04U-10A-01D-A110-09 85bbbb48-4570-41e6-9e53-b38b2d463cbf Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A04U TCGA-A2-A04U-10A TCGA-A2-A04U-10A-01D-A113-01 53811b01-d583-44f7-a916-082b0c70ed89 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04U TCGA-A2-A04U-10A TCGA-A2-A04U-10A-01D-A113-01 53811b01-d583-44f7-a916-082b0c70ed89 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E07_735114.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-A2-A04U TCGA-A2-A04U-10A TCGA-A2-A04U-10A-01D-A113-01 53811b01-d583-44f7-a916-082b0c70ed89 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E07_735114.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04U TCGA-A2-A04U-10A TCGA-A2-A04U-10A-01D-A113-01 53811b01-d583-44f7-a916-082b0c70ed89 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E07_735114.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04U TCGA-A2-A04U-10A TCGA-A2-A04U-10A-01D-A113-01 53811b01-d583-44f7-a916-082b0c70ed89 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E07_735114.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04U TCGA-A2-A04U-10A TCGA-A2-A04U-10A-01D-A113-01 53811b01-d583-44f7-a916-082b0c70ed89 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E07_735114.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04U TCGA-A2-A04U-10A TCGA-A2-A04U-10A-01D-A113-01 53811b01-d583-44f7-a916-082b0c70ed89 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E07_735114.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04U TCGA-A2-A04U-10A TCGA-A2-A04U-10A-01D-A113-01 53811b01-d583-44f7-a916-082b0c70ed89 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E07_735114.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04U TCGA-A2-A04U-10A TCGA-A2-A04U-10A-01D-A113-01 53811b01-d583-44f7-a916-082b0c70ed89 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E07_735114.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-A2-A04U TCGA-A2-A04U-10A TCGA-A2-A04U-10A-01W-A12U-09 5affc1c9-ec30-4bb4-9d09-d28e289c47b7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21D-A032-05 169a9e96-a070-41ce-924a-2579e6933003 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21D-A032-05 169a9e96-a070-41ce-924a-2579e6933003 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A2-A04V-01A-21D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21D-A032-05 169a9e96-a070-41ce-924a-2579e6933003 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A2-A04V-01A-21D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21D-A032-05 169a9e96-a070-41ce-924a-2579e6933003 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A2-A04V-01A-21D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21D-A033-02 7576100a-9e4f-4989-8cf6-0157d656a70c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21D-A036-01 48d99272-3117-4309-9800-25900f7c695a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21D-A036-01 48d99272-3117-4309-9800-25900f7c695a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E09_666972.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21D-A036-01 48d99272-3117-4309-9800-25900f7c695a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E09_666972.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21D-A036-01 48d99272-3117-4309-9800-25900f7c695a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E09_666972.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21D-A036-01 48d99272-3117-4309-9800-25900f7c695a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E09_666972.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21D-A036-01 48d99272-3117-4309-9800-25900f7c695a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E09_666972.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21D-A036-01 48d99272-3117-4309-9800-25900f7c695a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E09_666972.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21D-A036-01 48d99272-3117-4309-9800-25900f7c695a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E09_666972.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21D-A036-01 48d99272-3117-4309-9800-25900f7c695a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E09_666972.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21D-A044-08 45cebf77-fdb5-4d91-9b6c-48195310b720 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21D-A045-09 66d1432f-0ef9-4f53-8ca5-6c6d8f6e020b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21D-A045-09 66d1432f-0ef9-4f53-8ca5-6c6d8f6e020b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21R-A034-07 72d79574-45e1-453a-bc95-a2dca1d3e251 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21R-A034-07 72d79574-45e1-453a-bc95-a2dca1d3e251 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012028_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21R-A034-07 72d79574-45e1-453a-bc95-a2dca1d3e251 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012028_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21R-A034-07 72d79574-45e1-453a-bc95-a2dca1d3e251 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012028_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21R-A034-07 72d79574-45e1-453a-bc95-a2dca1d3e251 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_609850.TCGA-A2-A04V-01A-21R-A034-07.110218_UNC12-SN629_0061_A81DH9ABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21R-A034-07 72d79574-45e1-453a-bc95-a2dca1d3e251 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_609852.TCGA-A2-A04V-01A-21R-A034-07.110218_UNC12-SN629_0061_A81DH9ABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21R-A034-07 72d79574-45e1-453a-bc95-a2dca1d3e251 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_609859.TCGA-A2-A04V-01A-21R-A034-07.110218_UNC12-SN629_0061_A81DH9ABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21R-A035-13 e6da1c9d-67ef-478b-b5b3-28730e021a31 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21R-A035-13 e6da1c9d-67ef-478b-b5b3-28730e021a31 miRNASeq IlluminaGA_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21W-A050-09 89501861-2778-4b88-9a44-939fed99850d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21W-A050-09 89501861-2778-4b88-9a44-939fed99850d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21W-A051-08 197ff7d1-6e0a-4054-863a-da4e25b54422 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21X-A048-08 0fd9cacd-316e-450a-bdcc-618180e7c446 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04V TCGA-A2-A04V-01A TCGA-A2-A04V-01A-21X-A049-09 ed30dcd0-55ff-4b2b-87f9-32f3b8b03d8e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04V TCGA-A2-A04V-10A TCGA-A2-A04V-10A-01D-A031-02 51789740-316e-44ac-8f2c-8b04230a88a5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04V TCGA-A2-A04V-10A TCGA-A2-A04V-10A-01D-A037-01 cddee8cc-8da6-4339-8f0a-9c117b81f1d8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04V TCGA-A2-A04V-10A TCGA-A2-A04V-10A-01D-A037-01 cddee8cc-8da6-4339-8f0a-9c117b81f1d8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E12_667024.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A04V TCGA-A2-A04V-10A TCGA-A2-A04V-10A-01D-A037-01 cddee8cc-8da6-4339-8f0a-9c117b81f1d8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E12_667024.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04V TCGA-A2-A04V-10A TCGA-A2-A04V-10A-01D-A037-01 cddee8cc-8da6-4339-8f0a-9c117b81f1d8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E12_667024.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04V TCGA-A2-A04V-10A TCGA-A2-A04V-10A-01D-A037-01 cddee8cc-8da6-4339-8f0a-9c117b81f1d8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E12_667024.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04V TCGA-A2-A04V-10A TCGA-A2-A04V-10A-01D-A037-01 cddee8cc-8da6-4339-8f0a-9c117b81f1d8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E12_667024.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04V TCGA-A2-A04V-10A TCGA-A2-A04V-10A-01D-A037-01 cddee8cc-8da6-4339-8f0a-9c117b81f1d8 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E12_667024.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A04V TCGA-A2-A04V-10A TCGA-A2-A04V-10A-01D-A046-08 10a183e1-0192-41a3-a4f8-d055af3d03d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04V TCGA-A2-A04V-10A TCGA-A2-A04V-10A-01D-A047-09 bac3ba9b-1c91-4626-b9c9-8bb698da17a0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04V TCGA-A2-A04V-10A TCGA-A2-A04V-10A-01W-A053-08 09785c32-a799-4391-918f-484935edb68d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04V TCGA-A2-A04V-10A TCGA-A2-A04V-10A-01W-A055-09 5a514786-920b-4f35-932d-c2116fdea598 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04V TCGA-A2-A04V-10A TCGA-A2-A04V-10A-01W-A055-09 5a514786-920b-4f35-932d-c2116fdea598 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A04V TCGA-A2-A04V-10A TCGA-A2-A04V-10A-01W-A055-09 5a514786-920b-4f35-932d-c2116fdea598 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A04V TCGA-A2-A04V-10A TCGA-A2-A04V-10A-01X-A052-08 bd1fa88a-82b0-403c-aade-53d82be2c284 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04V TCGA-A2-A04V-10A TCGA-A2-A04V-10A-01X-A054-09 9ee5358d-3d61-451f-8601-21a5c2341245 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31D-A10X-02 e5dc7e8b-8072-41f7-bc45-467e209b7a82 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31D-A10Y-09 7822a6b1-68c8-4675-993c-c4b54a510c09 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31D-A10Y-09 7822a6b1-68c8-4675-993c-c4b54a510c09 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31D-A111-01 e22edca1-493b-4d79-a311-3d5027d1e509 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31D-A111-01 e22edca1-493b-4d79-a311-3d5027d1e509 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G01_735168.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31D-A111-01 e22edca1-493b-4d79-a311-3d5027d1e509 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G01_735168.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31D-A111-01 e22edca1-493b-4d79-a311-3d5027d1e509 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G01_735168.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31D-A111-01 e22edca1-493b-4d79-a311-3d5027d1e509 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G01_735168.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31D-A111-01 e22edca1-493b-4d79-a311-3d5027d1e509 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G01_735168.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31D-A111-01 e22edca1-493b-4d79-a311-3d5027d1e509 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G01_735168.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31D-A111-01 e22edca1-493b-4d79-a311-3d5027d1e509 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G01_735168.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31D-A111-01 e22edca1-493b-4d79-a311-3d5027d1e509 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G01_735168.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31D-A112-05 cc668efd-d2ad-45b2-b7bd-4c4fbbea164b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31D-A112-05 cc668efd-d2ad-45b2-b7bd-4c4fbbea164b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-A2-A04W-01A-31D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31D-A112-05 cc668efd-d2ad-45b2-b7bd-4c4fbbea164b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-A2-A04W-01A-31D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31D-A112-05 cc668efd-d2ad-45b2-b7bd-4c4fbbea164b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-A2-A04W-01A-31D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31R-A114-13 ed7530e4-3cf7-4730-9799-b4e40c60e7df Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31R-A114-13 ed7530e4-3cf7-4730-9799-b4e40c60e7df miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A04W-01A-31R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31R-A114-13 ed7530e4-3cf7-4730-9799-b4e40c60e7df miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A04W-01A-31R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31R-A115-07 ddb62dc3-293b-4021-905a-83ae10aa0f8e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31R-A115-07 ddb62dc3-293b-4021-905a-83ae10aa0f8e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012782_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31R-A115-07 ddb62dc3-293b-4021-905a-83ae10aa0f8e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012782_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31R-A115-07 ddb62dc3-293b-4021-905a-83ae10aa0f8e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012782_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31R-A115-07 ddb62dc3-293b-4021-905a-83ae10aa0f8e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441868.TCGA-A2-A04W-01A-31R-A115-07.110510_UNC15-SN850_0068_AB0BDUABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31R-A115-07 ddb62dc3-293b-4021-905a-83ae10aa0f8e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442186.TCGA-A2-A04W-01A-31R-A115-07.110510_UNC15-SN850_0068_AB0BDUABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31R-A115-07 ddb62dc3-293b-4021-905a-83ae10aa0f8e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442197.TCGA-A2-A04W-01A-31R-A115-07.110510_UNC15-SN850_0068_AB0BDUABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A04W TCGA-A2-A04W-01A TCGA-A2-A04W-01A-31W-A12T-09 dad7aa87-083f-4899-8189-474ae1e1fbae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04W TCGA-A2-A04W-10A TCGA-A2-A04W-10A-01D-A10Z-02 8da7949b-ed55-4900-9c88-b49491ceba96 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04W TCGA-A2-A04W-10A TCGA-A2-A04W-10A-01D-A110-09 62188c38-1f49-4f09-bd46-f60922cd3e4a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04W TCGA-A2-A04W-10A TCGA-A2-A04W-10A-01D-A110-09 62188c38-1f49-4f09-bd46-f60922cd3e4a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A04W TCGA-A2-A04W-10A TCGA-A2-A04W-10A-01D-A113-01 43798a12-42f8-4ef0-a691-ad891b2f5230 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04W TCGA-A2-A04W-10A TCGA-A2-A04W-10A-01D-A113-01 43798a12-42f8-4ef0-a691-ad891b2f5230 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E09_735140.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-A2-A04W TCGA-A2-A04W-10A TCGA-A2-A04W-10A-01D-A113-01 43798a12-42f8-4ef0-a691-ad891b2f5230 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E09_735140.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04W TCGA-A2-A04W-10A TCGA-A2-A04W-10A-01D-A113-01 43798a12-42f8-4ef0-a691-ad891b2f5230 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E09_735140.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04W TCGA-A2-A04W-10A TCGA-A2-A04W-10A-01D-A113-01 43798a12-42f8-4ef0-a691-ad891b2f5230 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E09_735140.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04W TCGA-A2-A04W-10A TCGA-A2-A04W-10A-01D-A113-01 43798a12-42f8-4ef0-a691-ad891b2f5230 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E09_735140.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04W TCGA-A2-A04W-10A TCGA-A2-A04W-10A-01D-A113-01 43798a12-42f8-4ef0-a691-ad891b2f5230 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E09_735140.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04W TCGA-A2-A04W-10A TCGA-A2-A04W-10A-01D-A113-01 43798a12-42f8-4ef0-a691-ad891b2f5230 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E09_735140.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A04W TCGA-A2-A04W-10A TCGA-A2-A04W-10A-01D-A113-01 43798a12-42f8-4ef0-a691-ad891b2f5230 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E09_735140.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-A2-A04W TCGA-A2-A04W-10A TCGA-A2-A04W-10A-01W-A12U-09 77d6c803-df2e-45e9-aa27-92762bd35fb4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21D-A032-05 752873b4-81bc-4884-9761-a1f18dedf6bf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21D-A032-05 752873b4-81bc-4884-9761-a1f18dedf6bf DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A2-A04X-01A-21D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21D-A032-05 752873b4-81bc-4884-9761-a1f18dedf6bf DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A2-A04X-01A-21D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21D-A032-05 752873b4-81bc-4884-9761-a1f18dedf6bf DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A2-A04X-01A-21D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21D-A033-02 9e5b386d-24e3-4ce8-b180-9b4bee5b6008 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21D-A036-01 456b1e0c-72a4-4850-b52b-8eecf5ecabd8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21D-A036-01 456b1e0c-72a4-4850-b52b-8eecf5ecabd8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C01_666986.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21D-A036-01 456b1e0c-72a4-4850-b52b-8eecf5ecabd8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C01_666986.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21D-A036-01 456b1e0c-72a4-4850-b52b-8eecf5ecabd8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C01_666986.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21D-A036-01 456b1e0c-72a4-4850-b52b-8eecf5ecabd8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C01_666986.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21D-A036-01 456b1e0c-72a4-4850-b52b-8eecf5ecabd8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C01_666986.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21D-A036-01 456b1e0c-72a4-4850-b52b-8eecf5ecabd8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C01_666986.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21D-A036-01 456b1e0c-72a4-4850-b52b-8eecf5ecabd8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C01_666986.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21D-A036-01 456b1e0c-72a4-4850-b52b-8eecf5ecabd8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C01_666986.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21D-A044-08 37a961d8-b566-4c28-8f6b-7f06dec5101a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21D-A045-09 0576af7c-1c86-4bce-b319-957670a02e7b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21D-A19F-05 f75bb0bf-e05a-499b-bd81-d9bb9663b1c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21D-A19H-09 41f140b8-72b9-4ae3-8b25-6144d9f94d0f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21R-A034-07 08c54c9c-195c-4754-83af-a97544d0eb12 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21R-A034-07 08c54c9c-195c-4754-83af-a97544d0eb12 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012069_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21R-A034-07 08c54c9c-195c-4754-83af-a97544d0eb12 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012069_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21R-A034-07 08c54c9c-195c-4754-83af-a97544d0eb12 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012069_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21R-A034-07 08c54c9c-195c-4754-83af-a97544d0eb12 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446377.TCGA-A2-A04X-01A-21R-A034-07.110225_UNC12-SN629_0064_BB041HABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21R-A034-07 08c54c9c-195c-4754-83af-a97544d0eb12 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446383.TCGA-A2-A04X-01A-21R-A034-07.110225_UNC12-SN629_0064_BB041HABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21R-A034-07 08c54c9c-195c-4754-83af-a97544d0eb12 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446448.TCGA-A2-A04X-01A-21R-A034-07.110225_UNC12-SN629_0064_BB041HABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21R-A035-13 c019410d-49be-412b-af18-5add5cf8cac4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21R-A035-13 c019410d-49be-412b-af18-5add5cf8cac4 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A04X-01A-21R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21R-A035-13 c019410d-49be-412b-af18-5add5cf8cac4 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A04X-01A-21R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21W-A050-09 66a73891-2fea-450c-8224-0865d98b4346 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21W-A050-09 66a73891-2fea-450c-8224-0865d98b4346 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21W-A051-08 fa8d172a-5985-4e3a-8c5f-41dda76d8687 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21X-A048-08 e5f4c485-0ff8-4b35-ab31-feaa57487da7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04X TCGA-A2-A04X-01A TCGA-A2-A04X-01A-21X-A049-09 83f6fa21-a702-4d4f-860f-0e61b04f796f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04X TCGA-A2-A04X-10A TCGA-A2-A04X-10A-01D-A031-02 0ec112c5-e10b-4cd6-93fe-1c54b308e4cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04X TCGA-A2-A04X-10A TCGA-A2-A04X-10A-01D-A037-01 dbebd9f1-57ff-403d-8e36-4f48b84cfc9b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04X TCGA-A2-A04X-10A TCGA-A2-A04X-10A-01D-A037-01 dbebd9f1-57ff-403d-8e36-4f48b84cfc9b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D01_666888.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A04X TCGA-A2-A04X-10A TCGA-A2-A04X-10A-01D-A037-01 dbebd9f1-57ff-403d-8e36-4f48b84cfc9b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D01_666888.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04X TCGA-A2-A04X-10A TCGA-A2-A04X-10A-01D-A037-01 dbebd9f1-57ff-403d-8e36-4f48b84cfc9b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D01_666888.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04X TCGA-A2-A04X-10A TCGA-A2-A04X-10A-01D-A037-01 dbebd9f1-57ff-403d-8e36-4f48b84cfc9b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D01_666888.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04X TCGA-A2-A04X-10A TCGA-A2-A04X-10A-01D-A037-01 dbebd9f1-57ff-403d-8e36-4f48b84cfc9b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D01_666888.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04X TCGA-A2-A04X-10A TCGA-A2-A04X-10A-01D-A037-01 dbebd9f1-57ff-403d-8e36-4f48b84cfc9b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D01_666888.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04X TCGA-A2-A04X-10A TCGA-A2-A04X-10A-01D-A037-01 dbebd9f1-57ff-403d-8e36-4f48b84cfc9b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D01_666888.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04X TCGA-A2-A04X-10A TCGA-A2-A04X-10A-01D-A037-01 dbebd9f1-57ff-403d-8e36-4f48b84cfc9b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D01_666888.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A04X TCGA-A2-A04X-10A TCGA-A2-A04X-10A-01D-A046-08 69f06b14-5c00-4a79-8030-50d5af8d0bf2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04X TCGA-A2-A04X-10A TCGA-A2-A04X-10A-01D-A047-09 eb32b3ae-54a3-447b-a079-ed85247b1dd2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04X TCGA-A2-A04X-10A TCGA-A2-A04X-10A-01D-A19H-09 79ade75e-ad86-436d-b2e0-0b5100b472c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04X TCGA-A2-A04X-10A TCGA-A2-A04X-10A-01W-A053-08 8f0d91f3-1021-49d7-9d5f-eb5c5b58ed89 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04X TCGA-A2-A04X-10A TCGA-A2-A04X-10A-01W-A055-09 20662b69-e7e6-4f78-a7fb-2c1562ca4223 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04X TCGA-A2-A04X-10A TCGA-A2-A04X-10A-01W-A055-09 20662b69-e7e6-4f78-a7fb-2c1562ca4223 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A04X TCGA-A2-A04X-10A TCGA-A2-A04X-10A-01X-A052-08 3b45eca1-eba0-4306-bb26-56bc34f13514 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04X TCGA-A2-A04X-10A TCGA-A2-A04X-10A-01X-A054-09 144acef8-6dd6-4314-8cd7-3e1205b6424d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21D-A032-05 5b7af327-bb0c-4177-ab6a-bbde466d479c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21D-A032-05 5b7af327-bb0c-4177-ab6a-bbde466d479c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A2-A04Y-01A-21D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21D-A032-05 5b7af327-bb0c-4177-ab6a-bbde466d479c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A2-A04Y-01A-21D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21D-A032-05 5b7af327-bb0c-4177-ab6a-bbde466d479c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A2-A04Y-01A-21D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21D-A033-02 f879a763-4f49-4a51-9b53-b54237284bdf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21D-A036-01 93a1aed5-c6cc-4e07-9060-fd6cead060b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21D-A036-01 93a1aed5-c6cc-4e07-9060-fd6cead060b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C02_666946.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21D-A036-01 93a1aed5-c6cc-4e07-9060-fd6cead060b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C02_666946.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21D-A036-01 93a1aed5-c6cc-4e07-9060-fd6cead060b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C02_666946.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21D-A036-01 93a1aed5-c6cc-4e07-9060-fd6cead060b2 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C02_666946.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21D-A044-08 9a1f98c5-6f5a-4292-9323-a798d3197003 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21D-A045-09 22e3c204-ed0c-40b3-ba44-d7e3c031b1d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21R-A034-07 7002615e-435b-4631-bb5b-e4b7532a143a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21R-A034-07 7002615e-435b-4631-bb5b-e4b7532a143a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012070_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21R-A034-07 7002615e-435b-4631-bb5b-e4b7532a143a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012070_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21R-A034-07 7002615e-435b-4631-bb5b-e4b7532a143a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012070_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21R-A034-07 7002615e-435b-4631-bb5b-e4b7532a143a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446335.TCGA-A2-A04Y-01A-21R-A034-07.110225_UNC12-SN629_0064_BB041HABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21R-A034-07 7002615e-435b-4631-bb5b-e4b7532a143a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446396.TCGA-A2-A04Y-01A-21R-A034-07.110225_UNC12-SN629_0064_BB041HABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21R-A034-07 7002615e-435b-4631-bb5b-e4b7532a143a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446452.TCGA-A2-A04Y-01A-21R-A034-07.110225_UNC12-SN629_0064_BB041HABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21R-A035-13 3c601f8e-bc77-4235-a1aa-ec85a3a006cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21R-A035-13 3c601f8e-bc77-4235-a1aa-ec85a3a006cb miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A04Y-01A-21R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21R-A035-13 3c601f8e-bc77-4235-a1aa-ec85a3a006cb miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A04Y-01A-21R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21W-A050-09 3669bbbd-2e75-4b57-a5a8-8eebc25a97c2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21W-A050-09 3669bbbd-2e75-4b57-a5a8-8eebc25a97c2 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21W-A051-08 ce82ed2d-fa0f-443e-87d2-41237e5d54cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21X-A048-08 886125ed-707c-4df3-8c6a-c7910f5f3cf0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-01A TCGA-A2-A04Y-01A-21X-A049-09 c9626551-1c0a-4c7b-8328-908241bea43a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-10A TCGA-A2-A04Y-10A-01D-A031-02 3929a4f8-293f-4ef2-a8f5-def864e7f353 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-10A TCGA-A2-A04Y-10A-01D-A037-01 cfa531ae-713c-444f-a958-65e8a4f12701 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-10A TCGA-A2-A04Y-10A-01D-A037-01 cfa531ae-713c-444f-a958-65e8a4f12701 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E03_666982.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A04Y TCGA-A2-A04Y-10A TCGA-A2-A04Y-10A-01D-A037-01 cfa531ae-713c-444f-a958-65e8a4f12701 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E03_666982.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-10A TCGA-A2-A04Y-10A-01D-A037-01 cfa531ae-713c-444f-a958-65e8a4f12701 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E03_666982.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-10A TCGA-A2-A04Y-10A-01D-A037-01 cfa531ae-713c-444f-a958-65e8a4f12701 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E03_666982.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-10A TCGA-A2-A04Y-10A-01D-A037-01 cfa531ae-713c-444f-a958-65e8a4f12701 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E03_666982.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-10A TCGA-A2-A04Y-10A-01D-A037-01 cfa531ae-713c-444f-a958-65e8a4f12701 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E03_666982.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-10A TCGA-A2-A04Y-10A-01D-A037-01 cfa531ae-713c-444f-a958-65e8a4f12701 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E03_666982.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-10A TCGA-A2-A04Y-10A-01D-A037-01 cfa531ae-713c-444f-a958-65e8a4f12701 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E03_666982.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-10A TCGA-A2-A04Y-10A-01D-A046-08 3920aa54-e24f-42de-8dee-ed88beab909f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-10A TCGA-A2-A04Y-10A-01D-A047-09 f97c097c-2748-428f-ad47-d7c22c212975 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-10A TCGA-A2-A04Y-10A-01W-A053-08 59be9541-667b-43a7-b7c7-6428c68da5c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-10A TCGA-A2-A04Y-10A-01W-A055-09 f2467587-34f3-406d-8b3a-143c1bb52667 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-10A TCGA-A2-A04Y-10A-01W-A055-09 f2467587-34f3-406d-8b3a-143c1bb52667 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-10A TCGA-A2-A04Y-10A-01X-A052-08 c405840e-e824-4d52-9012-d495b1baab33 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A04Y TCGA-A2-A04Y-10A TCGA-A2-A04Y-10A-01X-A054-09 e2176062-9255-47db-b12c-322fdf72662f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A04Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11D-A10X-02 decaa34e-6f49-4dc9-b2fc-e353664ad6f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11D-A10Y-09 a630ed59-dd23-45e1-aa16-4f7a98e32728 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11D-A10Y-09 a630ed59-dd23-45e1-aa16-4f7a98e32728 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11D-A111-01 ffc153c8-b303-4bf6-aa6a-9db6f698a9fb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11D-A111-01 ffc153c8-b303-4bf6-aa6a-9db6f698a9fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H09_735102.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11D-A111-01 ffc153c8-b303-4bf6-aa6a-9db6f698a9fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H09_735102.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11D-A111-01 ffc153c8-b303-4bf6-aa6a-9db6f698a9fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H09_735102.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11D-A111-01 ffc153c8-b303-4bf6-aa6a-9db6f698a9fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H09_735102.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11D-A111-01 ffc153c8-b303-4bf6-aa6a-9db6f698a9fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H09_735102.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11D-A111-01 ffc153c8-b303-4bf6-aa6a-9db6f698a9fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H09_735102.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11D-A111-01 ffc153c8-b303-4bf6-aa6a-9db6f698a9fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H09_735102.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11D-A111-01 ffc153c8-b303-4bf6-aa6a-9db6f698a9fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H09_735102.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11D-A112-05 59d2a1af-8a72-4193-bb2c-4b0f0f58a9ee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11D-A112-05 59d2a1af-8a72-4193-bb2c-4b0f0f58a9ee DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-A2-A0CL-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11D-A112-05 59d2a1af-8a72-4193-bb2c-4b0f0f58a9ee DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-A2-A0CL-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11D-A112-05 59d2a1af-8a72-4193-bb2c-4b0f0f58a9ee DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-A2-A0CL-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11R-A114-13 e2735abe-89c3-4ea0-ba6f-d45f6b2e1dd6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11R-A114-13 e2735abe-89c3-4ea0-ba6f-d45f6b2e1dd6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A0CL-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11R-A114-13 e2735abe-89c3-4ea0-ba6f-d45f6b2e1dd6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A0CL-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11R-A115-07 ee92fcd7-4be2-47c2-9725-1ec425d212cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11R-A115-07 ee92fcd7-4be2-47c2-9725-1ec425d212cf Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012759_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11R-A115-07 ee92fcd7-4be2-47c2-9725-1ec425d212cf Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012759_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11R-A115-07 ee92fcd7-4be2-47c2-9725-1ec425d212cf Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012759_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11R-A115-07 ee92fcd7-4be2-47c2-9725-1ec425d212cf RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421124.TCGA-A2-A0CL-01A-11R-A115-07.110606_UNC12-SN629_0090_AD0CTGABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11R-A115-07 ee92fcd7-4be2-47c2-9725-1ec425d212cf RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421136.TCGA-A2-A0CL-01A-11R-A115-07.110606_UNC12-SN629_0090_AD0CTGABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11R-A115-07 ee92fcd7-4be2-47c2-9725-1ec425d212cf RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421167.TCGA-A2-A0CL-01A-11R-A115-07.110606_UNC12-SN629_0090_AD0CTGABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-01A TCGA-A2-A0CL-01A-11W-A12T-09 f3391ec3-e1aa-4fcd-a475-13b8679356d0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-10A TCGA-A2-A0CL-10A-01D-A10Z-02 6e95279b-5379-4bf3-ac9b-9e52aaa26e98 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-10A TCGA-A2-A0CL-10A-01D-A110-09 d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-10A TCGA-A2-A0CL-10A-01D-A110-09 d7dbbf16-03d9-4e08-9fea-d4fa3d8608d0 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-10A TCGA-A2-A0CL-10A-01D-A113-01 bfe92644-60a7-435d-bdae-bd283c1b408c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-10A TCGA-A2-A0CL-10A-01D-A113-01 bfe92644-60a7-435d-bdae-bd283c1b408c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C08_735010.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-A2-A0CL TCGA-A2-A0CL-10A TCGA-A2-A0CL-10A-01D-A113-01 bfe92644-60a7-435d-bdae-bd283c1b408c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C08_735010.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-10A TCGA-A2-A0CL-10A-01D-A113-01 bfe92644-60a7-435d-bdae-bd283c1b408c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C08_735010.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-10A TCGA-A2-A0CL-10A-01D-A113-01 bfe92644-60a7-435d-bdae-bd283c1b408c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C08_735010.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-10A TCGA-A2-A0CL-10A-01D-A113-01 bfe92644-60a7-435d-bdae-bd283c1b408c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C08_735010.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-10A TCGA-A2-A0CL-10A-01D-A113-01 bfe92644-60a7-435d-bdae-bd283c1b408c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C08_735010.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-10A TCGA-A2-A0CL-10A-01D-A113-01 bfe92644-60a7-435d-bdae-bd283c1b408c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C08_735010.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-10A TCGA-A2-A0CL-10A-01D-A113-01 bfe92644-60a7-435d-bdae-bd283c1b408c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C08_735010.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-A2-A0CL TCGA-A2-A0CL-10A TCGA-A2-A0CL-10A-01W-A12U-09 7aa6379f-a024-4c9d-a605-fb58e8bc4c8e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31D-A032-05 8463e1f0-aa72-4790-a73c-06b4c96cad04 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31D-A032-05 8463e1f0-aa72-4790-a73c-06b4c96cad04 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A2-A0CM-01A-31D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31D-A032-05 8463e1f0-aa72-4790-a73c-06b4c96cad04 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A2-A0CM-01A-31D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31D-A032-05 8463e1f0-aa72-4790-a73c-06b4c96cad04 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A2-A0CM-01A-31D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31D-A033-02 fa37f511-bd49-4b34-bd41-76ddecf5b15e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31D-A036-01 34e39e63-405b-4eae-a326-163ea06baa81 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31D-A036-01 34e39e63-405b-4eae-a326-163ea06baa81 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F06_666922.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31D-A036-01 34e39e63-405b-4eae-a326-163ea06baa81 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F06_666922.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31D-A036-01 34e39e63-405b-4eae-a326-163ea06baa81 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F06_666922.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31D-A036-01 34e39e63-405b-4eae-a326-163ea06baa81 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F06_666922.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31D-A036-01 34e39e63-405b-4eae-a326-163ea06baa81 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F06_666922.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31D-A036-01 34e39e63-405b-4eae-a326-163ea06baa81 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F06_666922.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31D-A036-01 34e39e63-405b-4eae-a326-163ea06baa81 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F06_666922.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31D-A036-01 34e39e63-405b-4eae-a326-163ea06baa81 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F06_666922.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31D-A044-08 af5fd4e3-a70a-405d-a765-9abaee76432a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31D-A045-09 6865d0b7-7e55-455b-9d7d-e0f4b8359a21 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31D-A128-09 4b9cbbe5-cbd6-4cde-853a-fa96a176e86d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31R-A034-07 62dd11c2-2271-45e7-b753-d0f0d79fdf23 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31R-A034-07 62dd11c2-2271-45e7-b753-d0f0d79fdf23 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011903_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31R-A034-07 62dd11c2-2271-45e7-b753-d0f0d79fdf23 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011903_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31R-A034-07 62dd11c2-2271-45e7-b753-d0f0d79fdf23 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011903_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31R-A034-07 62dd11c2-2271-45e7-b753-d0f0d79fdf23 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446260.TCGA-A2-A0CM-01A-31R-A034-07.110225_UNC12-SN629_0064_BB041HABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31R-A034-07 62dd11c2-2271-45e7-b753-d0f0d79fdf23 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446343.TCGA-A2-A0CM-01A-31R-A034-07.110225_UNC12-SN629_0064_BB041HABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31R-A034-07 62dd11c2-2271-45e7-b753-d0f0d79fdf23 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446358.TCGA-A2-A0CM-01A-31R-A034-07.110225_UNC12-SN629_0064_BB041HABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31R-A035-13 2a392c5e-b97a-4ff2-bfe0-0d7690cfd9bb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31R-A035-13 2a392c5e-b97a-4ff2-bfe0-0d7690cfd9bb miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0CM-01A-31R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31R-A035-13 2a392c5e-b97a-4ff2-bfe0-0d7690cfd9bb miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0CM-01A-31R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31W-A050-09 fe8023d4-5476-4c58-bf70-cbf65cdd4327 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31W-A050-09 fe8023d4-5476-4c58-bf70-cbf65cdd4327 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31W-A051-08 1f841ee8-a3b5-41f4-8f02-b9920786fa5f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31X-A048-08 ebe20f06-6b4c-423e-9a2b-687f9698a1e0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-01A TCGA-A2-A0CM-01A-31X-A049-09 0086d16a-315f-4190-8ec1-b04f005e061a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-10A TCGA-A2-A0CM-10A-01D-A031-02 56896782-932b-4705-9682-d6a7128919ff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-10A TCGA-A2-A0CM-10A-01D-A037-01 772d1d04-ba1e-4d13-a06a-7d7b3931aa27 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-10A TCGA-A2-A0CM-10A-01D-A037-01 772d1d04-ba1e-4d13-a06a-7d7b3931aa27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B02_666898.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0CM TCGA-A2-A0CM-10A TCGA-A2-A0CM-10A-01D-A037-01 772d1d04-ba1e-4d13-a06a-7d7b3931aa27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B02_666898.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-10A TCGA-A2-A0CM-10A-01D-A037-01 772d1d04-ba1e-4d13-a06a-7d7b3931aa27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B02_666898.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-10A TCGA-A2-A0CM-10A-01D-A037-01 772d1d04-ba1e-4d13-a06a-7d7b3931aa27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B02_666898.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-10A TCGA-A2-A0CM-10A-01D-A037-01 772d1d04-ba1e-4d13-a06a-7d7b3931aa27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B02_666898.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-10A TCGA-A2-A0CM-10A-01D-A037-01 772d1d04-ba1e-4d13-a06a-7d7b3931aa27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B02_666898.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-10A TCGA-A2-A0CM-10A-01D-A037-01 772d1d04-ba1e-4d13-a06a-7d7b3931aa27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B02_666898.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-10A TCGA-A2-A0CM-10A-01D-A037-01 772d1d04-ba1e-4d13-a06a-7d7b3931aa27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B02_666898.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-10A TCGA-A2-A0CM-10A-01D-A046-08 f88e9fc3-eaf0-468d-bf7d-d3a1a688927b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-10A TCGA-A2-A0CM-10A-01D-A047-09 a7b4d831-e0bf-4ec5-ae06-98aaec07941d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-10A TCGA-A2-A0CM-10A-01D-A128-09 23ce62ff-753c-4a79-adcc-2c39ed96d012 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-10A TCGA-A2-A0CM-10A-01W-A053-08 d3fae5d2-5d6a-4dec-a976-272961aca5c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-10A TCGA-A2-A0CM-10A-01W-A055-09 be44d49f-6519-4d7c-a1ba-577c7b365a37 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-10A TCGA-A2-A0CM-10A-01W-A055-09 be44d49f-6519-4d7c-a1ba-577c7b365a37 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-10A TCGA-A2-A0CM-10A-01X-A052-08 c8ad7b5c-a5a6-4e9c-bcd8-feea222ece94 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CM TCGA-A2-A0CM-10A TCGA-A2-A0CM-10A-01X-A054-09 eae0b6b2-448f-4f79-967a-3a5273b3b3c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11D-A032-05 105857b2-59de-42ae-8c14-3817d4c71198 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11D-A032-05 105857b2-59de-42ae-8c14-3817d4c71198 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A2-A0CP-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11D-A032-05 105857b2-59de-42ae-8c14-3817d4c71198 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A2-A0CP-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11D-A032-05 105857b2-59de-42ae-8c14-3817d4c71198 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A2-A0CP-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11D-A033-02 85b6860d-25fe-490e-8c58-2ddad3ef01c0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11D-A036-01 a7998037-e713-46a6-adc2-8c22aa0cd362 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11D-A036-01 a7998037-e713-46a6-adc2-8c22aa0cd362 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E07_666882.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11D-A036-01 a7998037-e713-46a6-adc2-8c22aa0cd362 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E07_666882.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11D-A036-01 a7998037-e713-46a6-adc2-8c22aa0cd362 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E07_666882.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11D-A036-01 a7998037-e713-46a6-adc2-8c22aa0cd362 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E07_666882.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11D-A036-01 a7998037-e713-46a6-adc2-8c22aa0cd362 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E07_666882.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11D-A036-01 a7998037-e713-46a6-adc2-8c22aa0cd362 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E07_666882.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11D-A036-01 a7998037-e713-46a6-adc2-8c22aa0cd362 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E07_666882.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11D-A036-01 a7998037-e713-46a6-adc2-8c22aa0cd362 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E07_666882.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11D-A044-08 c2f5da6a-c065-4be0-b576-22741ff7ab90 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11D-A045-09 1e36f1a0-4e05-4589-ae1e-c559c3726ce9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11R-A034-07 5c4dae2a-4b4a-47d0-b6fb-456bdf58ca15 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11R-A034-07 5c4dae2a-4b4a-47d0-b6fb-456bdf58ca15 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011904_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11R-A034-07 5c4dae2a-4b4a-47d0-b6fb-456bdf58ca15 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011904_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11R-A034-07 5c4dae2a-4b4a-47d0-b6fb-456bdf58ca15 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011904_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11R-A034-07 5c4dae2a-4b4a-47d0-b6fb-456bdf58ca15 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_840443.TCGA-A2-A0CP-01A-11R-A034-07.110725_UNC9-SN296_0208_AC0477ABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11R-A034-07 5c4dae2a-4b4a-47d0-b6fb-456bdf58ca15 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_840468.TCGA-A2-A0CP-01A-11R-A034-07.110725_UNC9-SN296_0208_AC0477ABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11R-A034-07 5c4dae2a-4b4a-47d0-b6fb-456bdf58ca15 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_840494.TCGA-A2-A0CP-01A-11R-A034-07.110725_UNC9-SN296_0208_AC0477ABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11R-A035-13 4c36d1df-6ff0-4110-bf2a-5f91865687bd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11R-A035-13 4c36d1df-6ff0-4110-bf2a-5f91865687bd miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0CP-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11R-A035-13 4c36d1df-6ff0-4110-bf2a-5f91865687bd miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0CP-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11W-A050-09 a776e274-fe9f-49a9-83ab-95ca6819c96b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11W-A050-09 a776e274-fe9f-49a9-83ab-95ca6819c96b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11W-A051-08 4a2fa8fc-17c9-4fe1-8578-a285e0ea411f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11X-A048-08 df55dc4c-c277-42cc-9ac5-64f4cdb1d6da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-01A TCGA-A2-A0CP-01A-11X-A049-09 8bfac65a-b8ca-47cf-9afd-66fd2af331cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-10A TCGA-A2-A0CP-10A-01D-A031-02 20615ecf-c353-483b-ba56-9eb34ec6e1d1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-10A TCGA-A2-A0CP-10A-01D-A037-01 029b7fb5-ba9b-4ba9-b6af-12b875f45ae3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-10A TCGA-A2-A0CP-10A-01D-A037-01 029b7fb5-ba9b-4ba9-b6af-12b875f45ae3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D08_666918.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0CP TCGA-A2-A0CP-10A TCGA-A2-A0CP-10A-01D-A037-01 029b7fb5-ba9b-4ba9-b6af-12b875f45ae3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D08_666918.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-10A TCGA-A2-A0CP-10A-01D-A037-01 029b7fb5-ba9b-4ba9-b6af-12b875f45ae3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D08_666918.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-10A TCGA-A2-A0CP-10A-01D-A037-01 029b7fb5-ba9b-4ba9-b6af-12b875f45ae3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D08_666918.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-10A TCGA-A2-A0CP-10A-01D-A037-01 029b7fb5-ba9b-4ba9-b6af-12b875f45ae3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D08_666918.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-10A TCGA-A2-A0CP-10A-01D-A037-01 029b7fb5-ba9b-4ba9-b6af-12b875f45ae3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D08_666918.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-10A TCGA-A2-A0CP-10A-01D-A037-01 029b7fb5-ba9b-4ba9-b6af-12b875f45ae3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D08_666918.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-10A TCGA-A2-A0CP-10A-01D-A037-01 029b7fb5-ba9b-4ba9-b6af-12b875f45ae3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D08_666918.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-10A TCGA-A2-A0CP-10A-01D-A046-08 c24a60ae-a9aa-47a8-a0aa-c50c02eada0b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-10A TCGA-A2-A0CP-10A-01D-A047-09 5a350d43-7e7d-480a-87c6-cd3c586d1336 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-10A TCGA-A2-A0CP-10A-01W-A053-08 594ad19c-7925-4a79-ba75-e598ccd32240 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-10A TCGA-A2-A0CP-10A-01W-A055-09 a1bb0524-fef9-405d-8e55-4c8ab74efb16 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-10A TCGA-A2-A0CP-10A-01W-A055-09 a1bb0524-fef9-405d-8e55-4c8ab74efb16 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-10A TCGA-A2-A0CP-10A-01X-A052-08 cdd1afae-ba02-47c0-b9ef-b44da7eb7c78 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CP TCGA-A2-A0CP-10A TCGA-A2-A0CP-10A-01X-A054-09 d02c7e01-9d14-413e-bba1-f6c5521d4d55 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CQ TCGA-A2-A0CQ-01A TCGA-A2-A0CQ-01A-21D-A032-05 4674318d-ddbe-4a17-b26f-50994b1fd8a4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CQ TCGA-A2-A0CQ-01A TCGA-A2-A0CQ-01A-21D-A032-05 4674318d-ddbe-4a17-b26f-50994b1fd8a4 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A2-A0CQ-01A-21D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A2-A0CQ TCGA-A2-A0CQ-01A TCGA-A2-A0CQ-01A-21D-A032-05 4674318d-ddbe-4a17-b26f-50994b1fd8a4 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A2-A0CQ-01A-21D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A2-A0CQ TCGA-A2-A0CQ-01A TCGA-A2-A0CQ-01A-21D-A032-05 4674318d-ddbe-4a17-b26f-50994b1fd8a4 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A2-A0CQ-01A-21D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A2-A0CQ TCGA-A2-A0CQ-01A TCGA-A2-A0CQ-01A-21D-A033-02 2c82087f-bcc6-47be-a3d8-8ae2f66896c3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CQ TCGA-A2-A0CQ-01A TCGA-A2-A0CQ-01A-21D-A036-01 28486246-1a3f-463d-87e4-a70d1eed0c88 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CQ TCGA-A2-A0CQ-01A TCGA-A2-A0CQ-01A-21D-A036-01 28486246-1a3f-463d-87e4-a70d1eed0c88 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D03_666990.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0CQ TCGA-A2-A0CQ-01A TCGA-A2-A0CQ-01A-21D-A036-01 28486246-1a3f-463d-87e4-a70d1eed0c88 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D03_666990.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CQ TCGA-A2-A0CQ-01A TCGA-A2-A0CQ-01A-21D-A036-01 28486246-1a3f-463d-87e4-a70d1eed0c88 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D03_666990.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CQ TCGA-A2-A0CQ-01A TCGA-A2-A0CQ-01A-21D-A036-01 28486246-1a3f-463d-87e4-a70d1eed0c88 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D03_666990.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CQ TCGA-A2-A0CQ-01A TCGA-A2-A0CQ-01A-21D-A036-01 28486246-1a3f-463d-87e4-a70d1eed0c88 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D03_666990.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CQ TCGA-A2-A0CQ-01A TCGA-A2-A0CQ-01A-21D-A036-01 28486246-1a3f-463d-87e4-a70d1eed0c88 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D03_666990.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CQ TCGA-A2-A0CQ-01A TCGA-A2-A0CQ-01A-21D-A036-01 28486246-1a3f-463d-87e4-a70d1eed0c88 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D03_666990.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CQ TCGA-A2-A0CQ-01A TCGA-A2-A0CQ-01A-21D-A036-01 28486246-1a3f-463d-87e4-a70d1eed0c88 SNP Genome_Wide_SNP_6 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1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CQ TCGA-A2-A0CQ-10A TCGA-A2-A0CQ-10A-01D-A037-01 cb0f5438-1026-4bcf-b102-d42115d80bdf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CQ TCGA-A2-A0CQ-10A TCGA-A2-A0CQ-10A-01D-A037-01 cb0f5438-1026-4bcf-b102-d42115d80bdf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D10_666988.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0CQ TCGA-A2-A0CQ-10A TCGA-A2-A0CQ-10A-01D-A037-01 cb0f5438-1026-4bcf-b102-d42115d80bdf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D10_666988.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CQ TCGA-A2-A0CQ-10A TCGA-A2-A0CQ-10A-01D-A037-01 cb0f5438-1026-4bcf-b102-d42115d80bdf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D10_666988.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CQ TCGA-A2-A0CQ-10A TCGA-A2-A0CQ-10A-01D-A037-01 cb0f5438-1026-4bcf-b102-d42115d80bdf SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D10_666988.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CQ TCGA-A2-A0CQ-10A TCGA-A2-A0CQ-10A-01D-A037-01 cb0f5438-1026-4bcf-b102-d42115d80bdf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D10_666988.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CQ TCGA-A2-A0CQ-10A TCGA-A2-A0CQ-10A-01D-A037-01 cb0f5438-1026-4bcf-b102-d42115d80bdf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D10_666988.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A0CQ TCGA-A2-A0CQ-10A TCGA-A2-A0CQ-10A-01D-A046-08 c81bd7bd-d08e-44c3-8965-4bcff5f581ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CQ TCGA-A2-A0CQ-10A TCGA-A2-A0CQ-10A-01D-A047-09 ed4651d7-764e-4a17-bd6d-78af71891fe0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CQ TCGA-A2-A0CQ-10A TCGA-A2-A0CQ-10A-01W-A053-08 cfcf0be6-cf49-451e-91cf-fe8923729fe6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CQ TCGA-A2-A0CQ-10A TCGA-A2-A0CQ-10A-01W-A055-09 a300b0ed-eb05-4a95-8947-258940ad090b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CQ TCGA-A2-A0CQ-10A TCGA-A2-A0CQ-10A-01W-A055-09 a300b0ed-eb05-4a95-8947-258940ad090b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0CQ TCGA-A2-A0CQ-10A TCGA-A2-A0CQ-10A-01X-A052-08 cd2f9c1e-2ae0-4447-a6bc-4d2f02d9642d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CQ TCGA-A2-A0CQ-10A TCGA-A2-A0CQ-10A-01X-A054-09 4b6a2478-450c-46f5-951c-ac1b54840450 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-01A TCGA-A2-A0CS-01A-11D-A10X-02 27ae71e8-d233-4470-a28b-e6a5afb71a5b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-01A TCGA-A2-A0CS-01A-11D-A10Y-09 fe96b832-cb86-4499-948a-5124a43d5c95 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-01A TCGA-A2-A0CS-01A-11D-A10Y-09 fe96b832-cb86-4499-948a-5124a43d5c95 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-01A TCGA-A2-A0CS-01A-11D-A111-01 f00b3a1a-5336-4540-a8e6-d731947f9ee5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-01A TCGA-A2-A0CS-01A-11D-A111-01 f00b3a1a-5336-4540-a8e6-d731947f9ee5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B10_735098.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-A2-A0CS TCGA-A2-A0CS-01A TCGA-A2-A0CS-01A-11D-A111-01 f00b3a1a-5336-4540-a8e6-d731947f9ee5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B10_735098.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-01A TCGA-A2-A0CS-01A-11D-A111-01 f00b3a1a-5336-4540-a8e6-d731947f9ee5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B10_735098.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-01A TCGA-A2-A0CS-01A-11D-A111-01 f00b3a1a-5336-4540-a8e6-d731947f9ee5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B10_735098.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-01A TCGA-A2-A0CS-01A-11D-A111-01 f00b3a1a-5336-4540-a8e6-d731947f9ee5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B10_735098.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-01A TCGA-A2-A0CS-01A-11D-A111-01 f00b3a1a-5336-4540-a8e6-d731947f9ee5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B10_735098.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-01A TCGA-A2-A0CS-01A-11D-A111-01 f00b3a1a-5336-4540-a8e6-d731947f9ee5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B10_735098.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-01A TCGA-A2-A0CS-01A-11D-A111-01 f00b3a1a-5336-4540-a8e6-d731947f9ee5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B10_735098.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-01A TCGA-A2-A0CS-01A-11D-A112-05 c4a5d8f3-d4f9-419a-9228-f5bc85c5197c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-01A TCGA-A2-A0CS-01A-11D-A112-05 c4a5d8f3-d4f9-419a-9228-f5bc85c5197c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-A2-A0CS-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-01A TCGA-A2-A0CS-01A-11D-A112-05 c4a5d8f3-d4f9-419a-9228-f5bc85c5197c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-A2-A0CS-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-01A TCGA-A2-A0CS-01A-11D-A112-05 c4a5d8f3-d4f9-419a-9228-f5bc85c5197c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-A2-A0CS-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-01A TCGA-A2-A0CS-01A-11R-A114-13 a4d47937-1102-4be6-a8e6-ea7b3d5c6d66 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-01A TCGA-A2-A0CS-01A-11R-A114-13 a4d47937-1102-4be6-a8e6-ea7b3d5c6d66 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A0CS-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-01A TCGA-A2-A0CS-01A-11R-A114-13 a4d47937-1102-4be6-a8e6-ea7b3d5c6d66 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A0CS-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-01A TCGA-A2-A0CS-01A-11R-A115-07 560ab6aa-cbfe-42ac-9446-9d3df720bc81 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-01A TCGA-A2-A0CS-01A-11R-A115-07 560ab6aa-cbfe-42ac-9446-9d3df720bc81 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012771_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-A2-A0CS TCGA-A2-A0CS-01A TCGA-A2-A0CS-01A-11R-A115-07 560ab6aa-cbfe-42ac-9446-9d3df720bc81 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012771_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-A2-A0CS TCGA-A2-A0CS-01A TCGA-A2-A0CS-01A-11R-A115-07 560ab6aa-cbfe-42ac-9446-9d3df720bc81 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012771_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-A2-A0CS TCGA-A2-A0CS-01A TCGA-A2-A0CS-01A-11R-A115-07 560ab6aa-cbfe-42ac-9446-9d3df720bc81 RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442236.TCGA-A2-A0CS-01A-11R-A115-07.110510_UNC15-SN850_0068_AB0BDUABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-01A TCGA-A2-A0CS-01A-11W-A12T-09 8a9b5293-6d0e-4214-bc94-51fd37584073 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-10A TCGA-A2-A0CS-10A-01D-A10Z-02 5e27c0d3-1210-4334-bafa-d16ccb5ef1fb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-10A TCGA-A2-A0CS-10A-01D-A110-09 748f5a6c-a00e-4da7-a556-d5460c51923d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-10A TCGA-A2-A0CS-10A-01D-A110-09 748f5a6c-a00e-4da7-a556-d5460c51923d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-10A TCGA-A2-A0CS-10A-01D-A113-01 b6b81a7a-1e6b-4118-91f0-3d2ea73f031a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-10A TCGA-A2-A0CS-10A-01D-A113-01 b6b81a7a-1e6b-4118-91f0-3d2ea73f031a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B03_735012.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-A2-A0CS TCGA-A2-A0CS-10A TCGA-A2-A0CS-10A-01D-A113-01 b6b81a7a-1e6b-4118-91f0-3d2ea73f031a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B03_735012.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-10A TCGA-A2-A0CS-10A-01D-A113-01 b6b81a7a-1e6b-4118-91f0-3d2ea73f031a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B03_735012.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-10A TCGA-A2-A0CS-10A-01D-A113-01 b6b81a7a-1e6b-4118-91f0-3d2ea73f031a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B03_735012.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-10A TCGA-A2-A0CS-10A-01D-A113-01 b6b81a7a-1e6b-4118-91f0-3d2ea73f031a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B03_735012.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-10A TCGA-A2-A0CS-10A-01D-A113-01 b6b81a7a-1e6b-4118-91f0-3d2ea73f031a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B03_735012.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-10A TCGA-A2-A0CS-10A-01D-A113-01 b6b81a7a-1e6b-4118-91f0-3d2ea73f031a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B03_735012.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-10A TCGA-A2-A0CS-10A-01D-A113-01 b6b81a7a-1e6b-4118-91f0-3d2ea73f031a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B03_735012.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-A2-A0CS TCGA-A2-A0CS-10A TCGA-A2-A0CS-10A-01W-A12U-09 4ef3da5a-4784-487d-a320-81fab9fe3c37 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31D-A058-05 c8bb3095-f1ba-48ed-b023-540ff4f6792b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31D-A059-01 548f7871-ac2a-469a-8f4a-4bda2aaae71a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31D-A059-01 548f7871-ac2a-469a-8f4a-4bda2aaae71a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G02_697016.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31D-A059-01 548f7871-ac2a-469a-8f4a-4bda2aaae71a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G02_697016.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31D-A059-01 548f7871-ac2a-469a-8f4a-4bda2aaae71a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G02_697016.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31D-A059-01 548f7871-ac2a-469a-8f4a-4bda2aaae71a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G02_697016.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31D-A059-01 548f7871-ac2a-469a-8f4a-4bda2aaae71a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G02_697016.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31D-A059-01 548f7871-ac2a-469a-8f4a-4bda2aaae71a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G02_697016.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31D-A059-01 548f7871-ac2a-469a-8f4a-4bda2aaae71a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G02_697016.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31D-A059-01 548f7871-ac2a-469a-8f4a-4bda2aaae71a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G02_697016.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31D-A060-02 725f8021-d4de-48bc-9df1-c23b5cc65d11 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31D-A074-08 b6159bb1-126c-4a87-8cee-7ba2fe3ac2d4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31D-A075-09 ae075729-1edc-43b9-83f4-289909bf89c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31D-A10P-05 a7a5ed7e-e0cb-4abb-8258-5d7f6570f859 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31D-A10P-05 a7a5ed7e-e0cb-4abb-8258-5d7f6570f859 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486023_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31D-A10P-05 a7a5ed7e-e0cb-4abb-8258-5d7f6570f859 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486023_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31D-A10P-05 a7a5ed7e-e0cb-4abb-8258-5d7f6570f859 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-A2-A0CT-01A-31D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31D-A10P-05 a7a5ed7e-e0cb-4abb-8258-5d7f6570f859 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-A2-A0CT-01A-31D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31R-A056-07 f33b0a48-706b-4fd8-b8b3-0a9f625bd0c0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31R-A056-07 f33b0a48-706b-4fd8-b8b3-0a9f625bd0c0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012502_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31R-A056-07 f33b0a48-706b-4fd8-b8b3-0a9f625bd0c0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012502_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31R-A056-07 f33b0a48-706b-4fd8-b8b3-0a9f625bd0c0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012502_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31R-A056-07 f33b0a48-706b-4fd8-b8b3-0a9f625bd0c0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480254.TCGA-A2-A0CT-01A-31R-A056-07.110318_SN749_0046_AB039FABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31R-A056-07 f33b0a48-706b-4fd8-b8b3-0a9f625bd0c0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480278.TCGA-A2-A0CT-01A-31R-A056-07.110318_SN749_0046_AB039FABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31R-A056-07 f33b0a48-706b-4fd8-b8b3-0a9f625bd0c0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480303.TCGA-A2-A0CT-01A-31R-A056-07.110318_SN749_0046_AB039FABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31R-A057-13 16ecc64d-97b2-4413-9891-73768b2abb0b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31R-A057-13 16ecc64d-97b2-4413-9891-73768b2abb0b miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0CT-01A-31R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31R-A057-13 16ecc64d-97b2-4413-9891-73768b2abb0b miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0CT-01A-31R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31W-A070-08 d39a590e-4a70-49d3-8389-e7ca25ba134a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31W-A071-09 2b412ad8-abda-4cf8-8f68-59dbce80031e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31W-A071-09 2b412ad8-abda-4cf8-8f68-59dbce80031e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 61 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31W-A071-09 2b412ad8-abda-4cf8-8f68-59dbce80031e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31X-A072-08 cf5506c4-4620-4823-aaff-65ac4d36dd5c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-01A TCGA-A2-A0CT-01A-31X-A073-09 44a00d14-3dd3-404d-b874-bc31ca2769e8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-10A TCGA-A2-A0CT-10A-01D-A059-01 95db43f8-c0ef-40c5-b2b9-90ce2a8069d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-10A TCGA-A2-A0CT-10A-01D-A059-01 95db43f8-c0ef-40c5-b2b9-90ce2a8069d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E06_697086.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-A2-A0CT TCGA-A2-A0CT-10A TCGA-A2-A0CT-10A-01D-A059-01 95db43f8-c0ef-40c5-b2b9-90ce2a8069d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E06_697086.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-10A TCGA-A2-A0CT-10A-01D-A059-01 95db43f8-c0ef-40c5-b2b9-90ce2a8069d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E06_697086.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-10A TCGA-A2-A0CT-10A-01D-A059-01 95db43f8-c0ef-40c5-b2b9-90ce2a8069d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E06_697086.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-10A TCGA-A2-A0CT-10A-01D-A059-01 95db43f8-c0ef-40c5-b2b9-90ce2a8069d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E06_697086.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-10A TCGA-A2-A0CT-10A-01D-A059-01 95db43f8-c0ef-40c5-b2b9-90ce2a8069d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E06_697086.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-10A TCGA-A2-A0CT-10A-01D-A059-01 95db43f8-c0ef-40c5-b2b9-90ce2a8069d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E06_697086.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-10A TCGA-A2-A0CT-10A-01D-A059-01 95db43f8-c0ef-40c5-b2b9-90ce2a8069d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E06_697086.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-10A TCGA-A2-A0CT-10A-01D-A060-02 31d43e66-e9c3-4bdc-be91-ce52353bc750 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-10A TCGA-A2-A0CT-10A-01D-A074-08 32227e93-e866-43fd-be71-f388de269629 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-10A TCGA-A2-A0CT-10A-01D-A075-09 44a5b526-5d0a-489b-97ba-1fda1c1ab5c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-10A TCGA-A2-A0CT-10A-01W-A070-08 e75da8f4-f1d4-4325-8090-cce22637ea0e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-10A TCGA-A2-A0CT-10A-01W-A071-09 b34c4ee7-2776-40c7-9b34-b53e5674aab8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-10A TCGA-A2-A0CT-10A-01W-A071-09 b34c4ee7-2776-40c7-9b34-b53e5674aab8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 61 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-10A TCGA-A2-A0CT-10A-01W-A071-09 b34c4ee7-2776-40c7-9b34-b53e5674aab8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-10A TCGA-A2-A0CT-10A-01X-A072-08 5ad085c5-976a-479f-a447-09e992142bab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0CT TCGA-A2-A0CT-10A TCGA-A2-A0CT-10A-01X-A073-09 e50547c4-f560-4b2c-99c4-8b47806bc30d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12D-A032-05 6979e300-2f3c-4dcc-bda6-4cf2c28a58f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12D-A032-05 6979e300-2f3c-4dcc-bda6-4cf2c28a58f6 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A2-A0CU-01A-12D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12D-A032-05 6979e300-2f3c-4dcc-bda6-4cf2c28a58f6 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A2-A0CU-01A-12D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12D-A032-05 6979e300-2f3c-4dcc-bda6-4cf2c28a58f6 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A2-A0CU-01A-12D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12D-A033-02 349286a4-436d-4f7c-aba0-e769e02380ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12D-A036-01 846ab0bd-1c82-48a3-a25a-8a3af1f2bfa0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12D-A036-01 846ab0bd-1c82-48a3-a25a-8a3af1f2bfa0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D04_666886.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12D-A036-01 846ab0bd-1c82-48a3-a25a-8a3af1f2bfa0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D04_666886.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12D-A036-01 846ab0bd-1c82-48a3-a25a-8a3af1f2bfa0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D04_666886.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12D-A036-01 846ab0bd-1c82-48a3-a25a-8a3af1f2bfa0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D04_666886.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12D-A036-01 846ab0bd-1c82-48a3-a25a-8a3af1f2bfa0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D04_666886.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12D-A036-01 846ab0bd-1c82-48a3-a25a-8a3af1f2bfa0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D04_666886.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12D-A036-01 846ab0bd-1c82-48a3-a25a-8a3af1f2bfa0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D04_666886.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12D-A036-01 846ab0bd-1c82-48a3-a25a-8a3af1f2bfa0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D04_666886.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12D-A044-08 30e044a9-4aef-4ea3-a03e-35d22b0efa47 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12D-A045-09 3692b3bb-81e3-42f8-b283-364f324d1a1b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12R-A034-07 84ea9827-9ad4-4e2f-be02-c88a9d4c4051 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12R-A034-07 84ea9827-9ad4-4e2f-be02-c88a9d4c4051 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011906_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12R-A034-07 84ea9827-9ad4-4e2f-be02-c88a9d4c4051 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011906_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12R-A034-07 84ea9827-9ad4-4e2f-be02-c88a9d4c4051 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011906_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12R-A034-07 84ea9827-9ad4-4e2f-be02-c88a9d4c4051 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446263.TCGA-A2-A0CU-01A-12R-A034-07.110225_UNC12-SN629_0064_BB041HABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12R-A034-07 84ea9827-9ad4-4e2f-be02-c88a9d4c4051 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446351.TCGA-A2-A0CU-01A-12R-A034-07.110225_UNC12-SN629_0064_BB041HABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12R-A034-07 84ea9827-9ad4-4e2f-be02-c88a9d4c4051 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446397.TCGA-A2-A0CU-01A-12R-A034-07.110225_UNC12-SN629_0064_BB041HABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12R-A035-13 32bd6ddb-525d-426f-9c98-4906162ad5cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12R-A035-13 32bd6ddb-525d-426f-9c98-4906162ad5cb miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0CU-01A-12R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12R-A035-13 32bd6ddb-525d-426f-9c98-4906162ad5cb miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0CU-01A-12R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12W-A050-09 a9aa68af-f5fe-4ac0-987f-8af49b85c231 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12W-A050-09 a9aa68af-f5fe-4ac0-987f-8af49b85c231 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12W-A051-08 4c136400-0e86-4c64-8fb6-15a7395826e6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12X-A048-08 6b2ff1be-9c5a-4ff1-8881-3a7c3ca0df78 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-01A TCGA-A2-A0CU-01A-12X-A049-09 d11e1454-2a0d-4321-b20d-e1493a18810c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-10A TCGA-A2-A0CU-10A-01D-A031-02 0a12241c-91d2-46ea-a0ba-91a9697ab08b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-10A TCGA-A2-A0CU-10A-01D-A037-01 946e23d2-64c0-4dbd-a470-e6c45b7f3333 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-10A TCGA-A2-A0CU-10A-01D-A037-01 946e23d2-64c0-4dbd-a470-e6c45b7f3333 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A11_666908.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0CU TCGA-A2-A0CU-10A TCGA-A2-A0CU-10A-01D-A037-01 946e23d2-64c0-4dbd-a470-e6c45b7f3333 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A11_666908.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-10A TCGA-A2-A0CU-10A-01D-A037-01 946e23d2-64c0-4dbd-a470-e6c45b7f3333 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A11_666908.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-10A TCGA-A2-A0CU-10A-01D-A037-01 946e23d2-64c0-4dbd-a470-e6c45b7f3333 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A11_666908.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-10A TCGA-A2-A0CU-10A-01D-A037-01 946e23d2-64c0-4dbd-a470-e6c45b7f3333 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A11_666908.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-10A TCGA-A2-A0CU-10A-01D-A037-01 946e23d2-64c0-4dbd-a470-e6c45b7f3333 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A11_666908.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-10A TCGA-A2-A0CU-10A-01D-A037-01 946e23d2-64c0-4dbd-a470-e6c45b7f3333 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A11_666908.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-10A TCGA-A2-A0CU-10A-01D-A037-01 946e23d2-64c0-4dbd-a470-e6c45b7f3333 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A11_666908.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-10A TCGA-A2-A0CU-10A-01D-A046-08 595be523-a411-4f3a-b1cc-a237e0851186 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-10A TCGA-A2-A0CU-10A-01D-A047-09 a166b211-7154-4fca-a8cb-60d16e29b6ce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-10A TCGA-A2-A0CU-10A-01W-A053-08 a62d42af-92de-4adc-9cd9-feebabf52c8f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-10A TCGA-A2-A0CU-10A-01W-A055-09 f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-10A TCGA-A2-A0CU-10A-01W-A055-09 f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-10A TCGA-A2-A0CU-10A-01X-A052-08 24cab5f7-f83f-4213-8bd9-0cceccb7a699 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CU TCGA-A2-A0CU-10A TCGA-A2-A0CU-10A-01X-A054-09 225424af-e55a-47d8-9291-142f797472fb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31D-A10X-02 86a679ec-114e-4c2b-a694-eb1c88bfa49a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31D-A10Y-09 5d1dead5-d9a5-42d3-a703-4c38ad6e8f57 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31D-A10Y-09 5d1dead5-d9a5-42d3-a703-4c38ad6e8f57 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31D-A111-01 8c3a83e9-071e-429b-88c7-21d4b2748ba3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31D-A111-01 8c3a83e9-071e-429b-88c7-21d4b2748ba3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C11_735086.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31D-A111-01 8c3a83e9-071e-429b-88c7-21d4b2748ba3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C11_735086.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31D-A111-01 8c3a83e9-071e-429b-88c7-21d4b2748ba3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C11_735086.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31D-A111-01 8c3a83e9-071e-429b-88c7-21d4b2748ba3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C11_735086.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31D-A111-01 8c3a83e9-071e-429b-88c7-21d4b2748ba3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C11_735086.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31D-A111-01 8c3a83e9-071e-429b-88c7-21d4b2748ba3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C11_735086.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31D-A111-01 8c3a83e9-071e-429b-88c7-21d4b2748ba3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C11_735086.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31D-A111-01 8c3a83e9-071e-429b-88c7-21d4b2748ba3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C11_735086.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31D-A112-05 16da4712-93bd-490f-a54c-3c3f6c1ffc59 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31D-A112-05 16da4712-93bd-490f-a54c-3c3f6c1ffc59 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-A2-A0CV-01A-31D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31D-A112-05 16da4712-93bd-490f-a54c-3c3f6c1ffc59 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-A2-A0CV-01A-31D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31D-A112-05 16da4712-93bd-490f-a54c-3c3f6c1ffc59 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-A2-A0CV-01A-31D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31R-A114-13 a54e1dc5-877f-46a0-b0b7-dc3726a44e63 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31R-A114-13 a54e1dc5-877f-46a0-b0b7-dc3726a44e63 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A0CV-01A-31R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31R-A114-13 a54e1dc5-877f-46a0-b0b7-dc3726a44e63 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A0CV-01A-31R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31R-A115-07 a8154f60-e391-44b5-b378-c944c5e8621d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31R-A115-07 a8154f60-e391-44b5-b378-c944c5e8621d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012785_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31R-A115-07 a8154f60-e391-44b5-b378-c944c5e8621d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012785_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31R-A115-07 a8154f60-e391-44b5-b378-c944c5e8621d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012785_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31R-A115-07 a8154f60-e391-44b5-b378-c944c5e8621d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_410761.TCGA-A2-A0CV-01A-31R-A115-07.110607_UNC14-SN744_0125_BD0CRWABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31R-A115-07 a8154f60-e391-44b5-b378-c944c5e8621d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_410836.TCGA-A2-A0CV-01A-31R-A115-07.110607_UNC14-SN744_0125_BD0CRWABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31R-A115-07 a8154f60-e391-44b5-b378-c944c5e8621d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_410857.TCGA-A2-A0CV-01A-31R-A115-07.110607_UNC14-SN744_0125_BD0CRWABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-01A TCGA-A2-A0CV-01A-31W-A12T-09 ad028d10-5173-493a-ad90-e62e9d3a19aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-10A TCGA-A2-A0CV-10A-01D-A10Z-02 41065bf1-4314-4660-9a3a-800652500f06 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-10A TCGA-A2-A0CV-10A-01D-A110-09 7d4e8176-424e-41d9-ba1c-48feff2d2350 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-10A TCGA-A2-A0CV-10A-01D-A110-09 7d4e8176-424e-41d9-ba1c-48feff2d2350 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-10A TCGA-A2-A0CV-10A-01D-A113-01 7dfd53cc-1d67-4c3c-ba3e-3629ee353473 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-10A TCGA-A2-A0CV-10A-01D-A113-01 7dfd53cc-1d67-4c3c-ba3e-3629ee353473 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B11_735176.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-A2-A0CV TCGA-A2-A0CV-10A TCGA-A2-A0CV-10A-01D-A113-01 7dfd53cc-1d67-4c3c-ba3e-3629ee353473 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B11_735176.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-10A TCGA-A2-A0CV-10A-01D-A113-01 7dfd53cc-1d67-4c3c-ba3e-3629ee353473 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B11_735176.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-10A TCGA-A2-A0CV-10A-01D-A113-01 7dfd53cc-1d67-4c3c-ba3e-3629ee353473 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B11_735176.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-10A TCGA-A2-A0CV-10A-01D-A113-01 7dfd53cc-1d67-4c3c-ba3e-3629ee353473 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B11_735176.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-10A TCGA-A2-A0CV-10A-01D-A113-01 7dfd53cc-1d67-4c3c-ba3e-3629ee353473 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B11_735176.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-10A TCGA-A2-A0CV-10A-01D-A113-01 7dfd53cc-1d67-4c3c-ba3e-3629ee353473 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B11_735176.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-10A TCGA-A2-A0CV-10A-01D-A113-01 7dfd53cc-1d67-4c3c-ba3e-3629ee353473 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B11_735176.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-A2-A0CV TCGA-A2-A0CV-10A TCGA-A2-A0CV-10A-01W-A12U-09 4368a55a-2d2b-44e9-8e98-8ad63b22e1de Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-01A TCGA-A2-A0CW-01A-21D-A10X-02 d67b8607-4875-4f01-bac6-c7c9fa74f99d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-01A TCGA-A2-A0CW-01A-21D-A10Y-09 da4f0f85-b16f-40fa-95c6-524d70d7ac4d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-01A TCGA-A2-A0CW-01A-21D-A10Y-09 da4f0f85-b16f-40fa-95c6-524d70d7ac4d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-01A TCGA-A2-A0CW-01A-21D-A111-01 6f1627be-b4c7-4b99-874b-f1313bc2f284 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-01A TCGA-A2-A0CW-01A-21D-A111-01 6f1627be-b4c7-4b99-874b-f1313bc2f284 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D01_735128.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-A2-A0CW TCGA-A2-A0CW-01A TCGA-A2-A0CW-01A-21D-A111-01 6f1627be-b4c7-4b99-874b-f1313bc2f284 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D01_735128.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-01A TCGA-A2-A0CW-01A-21D-A111-01 6f1627be-b4c7-4b99-874b-f1313bc2f284 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D01_735128.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-01A TCGA-A2-A0CW-01A-21D-A111-01 6f1627be-b4c7-4b99-874b-f1313bc2f284 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D01_735128.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-01A TCGA-A2-A0CW-01A-21D-A111-01 6f1627be-b4c7-4b99-874b-f1313bc2f284 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D01_735128.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-01A TCGA-A2-A0CW-01A-21D-A111-01 6f1627be-b4c7-4b99-874b-f1313bc2f284 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D01_735128.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-01A TCGA-A2-A0CW-01A-21D-A111-01 6f1627be-b4c7-4b99-874b-f1313bc2f284 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D01_735128.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-01A TCGA-A2-A0CW-01A-21D-A111-01 6f1627be-b4c7-4b99-874b-f1313bc2f284 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D01_735128.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-01A TCGA-A2-A0CW-01A-21D-A112-05 7252365d-a684-4605-b62e-6d6545891d1f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-01A TCGA-A2-A0CW-01A-21D-A112-05 7252365d-a684-4605-b62e-6d6545891d1f DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-A2-A0CW-01A-21D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-01A TCGA-A2-A0CW-01A-21D-A112-05 7252365d-a684-4605-b62e-6d6545891d1f DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-A2-A0CW-01A-21D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-01A TCGA-A2-A0CW-01A-21D-A112-05 7252365d-a684-4605-b62e-6d6545891d1f DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-A2-A0CW-01A-21D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-01A TCGA-A2-A0CW-01A-21R-A114-13 3d280bfd-2d13-49c3-b0ee-673136fe4c0c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-01A TCGA-A2-A0CW-01A-21R-A115-07 1c1560f6-62bf-4185-912f-25c234ebd71f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-01A TCGA-A2-A0CW-01A-21R-A115-07 1c1560f6-62bf-4185-912f-25c234ebd71f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012797_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-A2-A0CW TCGA-A2-A0CW-01A TCGA-A2-A0CW-01A-21R-A115-07 1c1560f6-62bf-4185-912f-25c234ebd71f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012797_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-A2-A0CW TCGA-A2-A0CW-01A TCGA-A2-A0CW-01A-21R-A115-07 1c1560f6-62bf-4185-912f-25c234ebd71f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012797_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-A2-A0CW TCGA-A2-A0CW-01A TCGA-A2-A0CW-01A-21R-A115-07 1c1560f6-62bf-4185-912f-25c234ebd71f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_410787.TCGA-A2-A0CW-01A-21R-A115-07.110607_UNC14-SN744_0125_BD0CRWABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-01A TCGA-A2-A0CW-01A-21R-A115-07 1c1560f6-62bf-4185-912f-25c234ebd71f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_410818.TCGA-A2-A0CW-01A-21R-A115-07.110607_UNC14-SN744_0125_BD0CRWABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-01A TCGA-A2-A0CW-01A-21R-A115-07 1c1560f6-62bf-4185-912f-25c234ebd71f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_410854.TCGA-A2-A0CW-01A-21R-A115-07.110607_UNC14-SN744_0125_BD0CRWABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-01A TCGA-A2-A0CW-01A-21W-A12T-09 8de8e770-096b-4d74-81a5-f5e57e477127 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-10A TCGA-A2-A0CW-10A-01D-A10Z-02 8fad1a82-c00a-40ae-9d72-8641edcbb4b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-10A TCGA-A2-A0CW-10A-01D-A110-09 b6b51168-dc64-4bb1-aca5-346a1f1c8b67 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-10A TCGA-A2-A0CW-10A-01D-A110-09 b6b51168-dc64-4bb1-aca5-346a1f1c8b67 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-10A TCGA-A2-A0CW-10A-01D-A113-01 bfdb8282-62b3-4f24-bc7d-efe162da015e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-10A TCGA-A2-A0CW-10A-01D-A113-01 bfdb8282-62b3-4f24-bc7d-efe162da015e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E05_735020.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-A2-A0CW TCGA-A2-A0CW-10A TCGA-A2-A0CW-10A-01D-A113-01 bfdb8282-62b3-4f24-bc7d-efe162da015e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E05_735020.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-10A TCGA-A2-A0CW-10A-01D-A113-01 bfdb8282-62b3-4f24-bc7d-efe162da015e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E05_735020.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-10A TCGA-A2-A0CW-10A-01D-A113-01 bfdb8282-62b3-4f24-bc7d-efe162da015e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E05_735020.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-10A TCGA-A2-A0CW-10A-01D-A113-01 bfdb8282-62b3-4f24-bc7d-efe162da015e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E05_735020.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-10A TCGA-A2-A0CW-10A-01D-A113-01 bfdb8282-62b3-4f24-bc7d-efe162da015e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E05_735020.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-10A TCGA-A2-A0CW-10A-01D-A113-01 bfdb8282-62b3-4f24-bc7d-efe162da015e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E05_735020.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-10A TCGA-A2-A0CW-10A-01D-A113-01 bfdb8282-62b3-4f24-bc7d-efe162da015e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E05_735020.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-A2-A0CW TCGA-A2-A0CW-10A TCGA-A2-A0CW-10A-01W-A12U-09 fb84ac75-484f-4e17-804e-3730dbb41742 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-01A TCGA-A2-A0CX-01A-21D-A00Y-05 87571cd1-467d-4320-b665-0ba2ec8dc145 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-01A TCGA-A2-A0CX-01A-21D-A00Y-05 87571cd1-467d-4320-b665-0ba2ec8dc145 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A2-A0CX-01A-21D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-01A TCGA-A2-A0CX-01A-21D-A00Y-05 87571cd1-467d-4320-b665-0ba2ec8dc145 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A2-A0CX-01A-21D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-01A TCGA-A2-A0CX-01A-21D-A00Y-05 87571cd1-467d-4320-b665-0ba2ec8dc145 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A2-A0CX-01A-21D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-01A TCGA-A2-A0CX-01A-21D-A011-01 17076dfd-f38a-4894-b39e-f732f4a0823a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-01A TCGA-A2-A0CX-01A-21D-A011-01 17076dfd-f38a-4894-b39e-f732f4a0823a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A12_628274.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A2-A0CX TCGA-A2-A0CX-01A TCGA-A2-A0CX-01A-21D-A011-01 17076dfd-f38a-4894-b39e-f732f4a0823a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A12_628274.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-01A TCGA-A2-A0CX-01A-21D-A011-01 17076dfd-f38a-4894-b39e-f732f4a0823a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A12_628274.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-01A TCGA-A2-A0CX-01A-21D-A011-01 17076dfd-f38a-4894-b39e-f732f4a0823a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A12_628274.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-01A TCGA-A2-A0CX-01A-21D-A011-01 17076dfd-f38a-4894-b39e-f732f4a0823a SNP Genome_Wide_SNP_6 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1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-01A TCGA-A2-A0CX-01A-21R-A00Z-07 b1ecc303-eb55-436f-9629-cdac63bde297 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-01A TCGA-A2-A0CX-01A-21R-A00Z-07 b1ecc303-eb55-436f-9629-cdac63bde297 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011857_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A2-A0CX TCGA-A2-A0CX-01A TCGA-A2-A0CX-01A-21R-A00Z-07 b1ecc303-eb55-436f-9629-cdac63bde297 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011857_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A2-A0CX TCGA-A2-A0CX-01A TCGA-A2-A0CX-01A-21R-A00Z-07 b1ecc303-eb55-436f-9629-cdac63bde297 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011857_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A2-A0CX TCGA-A2-A0CX-01A TCGA-A2-A0CX-01A-21R-A00Z-07 b1ecc303-eb55-436f-9629-cdac63bde297 RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-01A TCGA-A2-A0CX-01A-21W-A019-09 975adb76-3561-41a0-959a-68da470816c7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-01A TCGA-A2-A0CX-01A-21W-A019-09 975adb76-3561-41a0-959a-68da470816c7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 47 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-01A TCGA-A2-A0CX-01A-21W-A019-09 975adb76-3561-41a0-959a-68da470816c7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-01A TCGA-A2-A0CX-01A-21W-A020-08 37695e40-469c-4f7f-a229-25cdccd4ae44 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-01A TCGA-A2-A0CX-01A-21X-A023-09 bc029389-f89d-4f88-bb38-b3bf3d251a30 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-01A TCGA-A2-A0CX-01A-21X-A024-08 f084c706-8633-4c1e-97d6-8cd23cdbe603 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-10A TCGA-A2-A0CX-10A-01D-A012-01 f15f4f9b-d450-4ca0-b19e-6d8a6a394c06 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-10A TCGA-A2-A0CX-10A-01D-A012-01 f15f4f9b-d450-4ca0-b19e-6d8a6a394c06 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B03_628222.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A2-A0CX TCGA-A2-A0CX-10A TCGA-A2-A0CX-10A-01D-A012-01 f15f4f9b-d450-4ca0-b19e-6d8a6a394c06 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B03_628222.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-10A TCGA-A2-A0CX-10A-01D-A012-01 f15f4f9b-d450-4ca0-b19e-6d8a6a394c06 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B03_628222.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-10A TCGA-A2-A0CX-10A-01D-A012-01 f15f4f9b-d450-4ca0-b19e-6d8a6a394c06 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B03_628222.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-10A TCGA-A2-A0CX-10A-01D-A012-01 f15f4f9b-d450-4ca0-b19e-6d8a6a394c06 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B03_628222.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-10A TCGA-A2-A0CX-10A-01D-A012-01 f15f4f9b-d450-4ca0-b19e-6d8a6a394c06 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B03_628222.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-10A TCGA-A2-A0CX-10A-01D-A012-01 f15f4f9b-d450-4ca0-b19e-6d8a6a394c06 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B03_628222.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-10A TCGA-A2-A0CX-10A-01D-A012-01 f15f4f9b-d450-4ca0-b19e-6d8a6a394c06 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B03_628222.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-10A TCGA-A2-A0CX-10A-01D-A017-09 299918fb-278a-4ba8-beba-540238098d96 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-10A TCGA-A2-A0CX-10A-01D-A018-08 822fda5e-9aa3-4599-8b65-7d01e73665ff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-10A TCGA-A2-A0CX-10A-01D-A069-02 6bf1dc99-7da9-4711-bf64-3bdc311bfcd1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-10A TCGA-A2-A0CX-10A-01W-A021-09 dd43a88d-fd04-4ce4-8bac-1478975304aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-10A TCGA-A2-A0CX-10A-01W-A021-09 dd43a88d-fd04-4ce4-8bac-1478975304aa Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 47 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-10A TCGA-A2-A0CX-10A-01W-A021-09 dd43a88d-fd04-4ce4-8bac-1478975304aa Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-10A TCGA-A2-A0CX-10A-01W-A022-08 cb64048b-808d-4e06-ba70-7779c49fd94c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-10A TCGA-A2-A0CX-10A-01X-A025-09 a19bf70e-01a7-4f5e-a030-6ec7c4dd7e2b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0CX TCGA-A2-A0CX-10A TCGA-A2-A0CX-10A-01X-A026-08 dc641cac-04d4-4cb8-aff8-18c562003a62 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-01A TCGA-A2-A0CY-01A-12D-A032-05 1def2c72-586f-43ec-92d2-8e0502bf6502 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-01A TCGA-A2-A0CY-01A-12D-A032-05 1def2c72-586f-43ec-92d2-8e0502bf6502 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A2-A0CY-01A-12D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-01A TCGA-A2-A0CY-01A-12D-A032-05 1def2c72-586f-43ec-92d2-8e0502bf6502 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A2-A0CY-01A-12D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-01A TCGA-A2-A0CY-01A-12D-A032-05 1def2c72-586f-43ec-92d2-8e0502bf6502 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A2-A0CY-01A-12D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-01A TCGA-A2-A0CY-01A-12D-A033-02 a77eb905-7417-491e-b5c0-00c26a2ca2ce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-01A TCGA-A2-A0CY-01A-12D-A036-01 a4454fab-7a3d-41e4-9253-32222e02563f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. TCGA-A2-A0CY TCGA-A2-A0CY-01A TCGA-A2-A0CY-01A-12D-A036-01 a4454fab-7a3d-41e4-9253-32222e02563f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. TCGA-A2-A0CY TCGA-A2-A0CY-01A TCGA-A2-A0CY-01A-12D-A036-01 a4454fab-7a3d-41e4-9253-32222e02563f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. TCGA-A2-A0CY TCGA-A2-A0CY-01A TCGA-A2-A0CY-01A-12D-A036-01 a4454fab-7a3d-41e4-9253-32222e02563f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. TCGA-A2-A0CY TCGA-A2-A0CY-01A TCGA-A2-A0CY-01A-12D-A036-01 a4454fab-7a3d-41e4-9253-32222e02563f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. TCGA-A2-A0CY TCGA-A2-A0CY-01A TCGA-A2-A0CY-01A-12D-A036-01 a4454fab-7a3d-41e4-9253-32222e02563f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. TCGA-A2-A0CY TCGA-A2-A0CY-01A TCGA-A2-A0CY-01A-12D-A036-01 a4454fab-7a3d-41e4-9253-32222e02563f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B11_666964.after_5NN.copynumber.data.txt'. TCGA-A2-A0CY TCGA-A2-A0CY-01A TCGA-A2-A0CY-01A-12D-A044-08 f42c287f-3a5e-4ef2-92db-7958173a56d4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-01A TCGA-A2-A0CY-01A-12D-A045-09 d4c878f5-e0c4-4db9-b8bc-e3a75a2e4d53 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-01A TCGA-A2-A0CY-01A-12R-A034-07 c7d2b685-5f11-4879-82d5-e983b5dbb07d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-01A TCGA-A2-A0CY-01A-12R-A034-07 c7d2b685-5f11-4879-82d5-e983b5dbb07d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012079_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A2-A0CY TCGA-A2-A0CY-01A TCGA-A2-A0CY-01A-12R-A034-07 c7d2b685-5f11-4879-82d5-e983b5dbb07d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012079_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A2-A0CY TCGA-A2-A0CY-01A TCGA-A2-A0CY-01A-12R-A034-07 c7d2b685-5f11-4879-82d5-e983b5dbb07d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012079_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A2-A0CY TCGA-A2-A0CY-01A TCGA-A2-A0CY-01A-12R-A035-13 42c49e68-03b5-4394-92d8-de8379b53736 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-01A TCGA-A2-A0CY-01A-12R-A035-13 42c49e68-03b5-4394-92d8-de8379b53736 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0CY-01A-12R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-01A TCGA-A2-A0CY-01A-12R-A035-13 42c49e68-03b5-4394-92d8-de8379b53736 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0CY-01A-12R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-01A TCGA-A2-A0CY-01A-12W-A050-09 68aaaf84-0412-4d66-a422-22dad65ec0ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-01A TCGA-A2-A0CY-01A-12W-A051-08 0777bb6d-f2f9-4e31-bc3a-2530cae0f517 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-01A TCGA-A2-A0CY-01A-12X-A048-08 806caeb0-4df4-49cc-8290-8a6649555478 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-01A TCGA-A2-A0CY-01A-12X-A049-09 f725e559-a5a6-46dd-8bcb-9902eec895d5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-10A TCGA-A2-A0CY-10A-01D-A031-02 fd90924f-802e-4e72-b0c7-dfd20dba64f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-10A TCGA-A2-A0CY-10A-01D-A037-01 0583d37d-a147-46f4-81b1-91e5207374d1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-10A TCGA-A2-A0CY-10A-01D-A037-01 0583d37d-a147-46f4-81b1-91e5207374d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B12_666920.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0CY TCGA-A2-A0CY-10A TCGA-A2-A0CY-10A-01D-A037-01 0583d37d-a147-46f4-81b1-91e5207374d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B12_666920.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-10A TCGA-A2-A0CY-10A-01D-A037-01 0583d37d-a147-46f4-81b1-91e5207374d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B12_666920.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-10A TCGA-A2-A0CY-10A-01D-A037-01 0583d37d-a147-46f4-81b1-91e5207374d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B12_666920.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-10A TCGA-A2-A0CY-10A-01D-A037-01 0583d37d-a147-46f4-81b1-91e5207374d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B12_666920.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-10A TCGA-A2-A0CY-10A-01D-A037-01 0583d37d-a147-46f4-81b1-91e5207374d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B12_666920.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-10A TCGA-A2-A0CY-10A-01D-A037-01 0583d37d-a147-46f4-81b1-91e5207374d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B12_666920.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-10A TCGA-A2-A0CY-10A-01D-A037-01 0583d37d-a147-46f4-81b1-91e5207374d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B12_666920.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-10A TCGA-A2-A0CY-10A-01D-A046-08 e8817a63-ad11-4e8e-9f52-ea7df7c0f7ba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-10A TCGA-A2-A0CY-10A-01D-A047-09 0ec10d45-3346-429d-b647-6ce8958fb8ff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-10A TCGA-A2-A0CY-10A-01W-A053-08 fd76fb3b-dd55-450d-9b56-6856ff5e8ab5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-10A TCGA-A2-A0CY-10A-01W-A055-09 475e15e8-a645-416b-b141-2e4f877f8f6d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-10A TCGA-A2-A0CY-10A-01X-A052-08 09958560-11eb-4197-9221-7d19b13117b7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CY TCGA-A2-A0CY-10A TCGA-A2-A0CY-10A-01X-A054-09 7e474e08-d465-4acc-9b12-a5f103debf08 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11D-A032-05 719e6f34-2081-4a68-9e4c-370acca1c88e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11D-A032-05 719e6f34-2081-4a68-9e4c-370acca1c88e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A2-A0CZ-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11D-A032-05 719e6f34-2081-4a68-9e4c-370acca1c88e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A2-A0CZ-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11D-A032-05 719e6f34-2081-4a68-9e4c-370acca1c88e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A2-A0CZ-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11D-A033-02 bb347094-64f9-462b-8e0c-75dbf38d13d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11D-A036-01 b223f800-9ce8-420f-bd12-dd6f9dd272a7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11D-A036-01 b223f800-9ce8-420f-bd12-dd6f9dd272a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11D-A036-01 b223f800-9ce8-420f-bd12-dd6f9dd272a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11D-A036-01 b223f800-9ce8-420f-bd12-dd6f9dd272a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11D-A036-01 b223f800-9ce8-420f-bd12-dd6f9dd272a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11D-A036-01 b223f800-9ce8-420f-bd12-dd6f9dd272a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11D-A036-01 b223f800-9ce8-420f-bd12-dd6f9dd272a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C05_667052.after_5NN.copynumber.data.txt'. TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11D-A044-08 c9c73c45-35d8-4eb1-accd-ab23b14d4961 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11D-A045-09 4730d58b-c3fa-4b42-909b-749f3345530b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11R-A034-07 229ebbe9-4dc8-434f-998c-fc0660cd2b00 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11R-A034-07 229ebbe9-4dc8-434f-998c-fc0660cd2b00 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012080_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11R-A034-07 229ebbe9-4dc8-434f-998c-fc0660cd2b00 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012080_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11R-A034-07 229ebbe9-4dc8-434f-998c-fc0660cd2b00 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012080_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11R-A034-07 229ebbe9-4dc8-434f-998c-fc0660cd2b00 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_654786.TCGA-A2-A0CZ-01A-11R-A034-07.110309_UNC12-SN629_0068_BB05LPABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11R-A034-07 229ebbe9-4dc8-434f-998c-fc0660cd2b00 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_654794.TCGA-A2-A0CZ-01A-11R-A034-07.110309_UNC12-SN629_0068_BB05LPABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11R-A034-07 229ebbe9-4dc8-434f-998c-fc0660cd2b00 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_654906.TCGA-A2-A0CZ-01A-11R-A034-07.110309_UNC12-SN629_0068_BB05LPABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11R-A035-13 a3994a1f-31f0-4f80-8efb-fc51eed8cf15 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11R-A035-13 a3994a1f-31f0-4f80-8efb-fc51eed8cf15 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0CZ-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11R-A035-13 a3994a1f-31f0-4f80-8efb-fc51eed8cf15 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0CZ-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11W-A050-09 95d5c606-367a-46b5-b663-dcea3f42e2a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11W-A050-09 95d5c606-367a-46b5-b663-dcea3f42e2a2 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11W-A050-09 95d5c606-367a-46b5-b663-dcea3f42e2a2 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11W-A051-08 4e1ee481-bad5-4ee9-bdb9-7bc425192f5d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11X-A048-08 0046ad7e-1eee-4982-a807-5b9e31da6f9a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-01A TCGA-A2-A0CZ-01A-11X-A049-09 f210cd27-cdb3-4a88-bdd1-1a1aa3d68240 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-10A TCGA-A2-A0CZ-10A-01D-A031-02 510815cc-3fb1-4ddc-89f4-dc5e01d42a7b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-10A TCGA-A2-A0CZ-10A-01D-A037-01 d96a30e1-75f9-4114-9cbd-6261706712a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-10A TCGA-A2-A0CZ-10A-01D-A037-01 d96a30e1-75f9-4114-9cbd-6261706712a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B01_667042.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0CZ TCGA-A2-A0CZ-10A TCGA-A2-A0CZ-10A-01D-A037-01 d96a30e1-75f9-4114-9cbd-6261706712a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B01_667042.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-10A TCGA-A2-A0CZ-10A-01D-A037-01 d96a30e1-75f9-4114-9cbd-6261706712a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B01_667042.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-10A TCGA-A2-A0CZ-10A-01D-A037-01 d96a30e1-75f9-4114-9cbd-6261706712a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B01_667042.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-10A TCGA-A2-A0CZ-10A-01D-A037-01 d96a30e1-75f9-4114-9cbd-6261706712a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B01_667042.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-10A TCGA-A2-A0CZ-10A-01D-A037-01 d96a30e1-75f9-4114-9cbd-6261706712a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B01_667042.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-10A TCGA-A2-A0CZ-10A-01D-A037-01 d96a30e1-75f9-4114-9cbd-6261706712a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B01_667042.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-10A TCGA-A2-A0CZ-10A-01D-A037-01 d96a30e1-75f9-4114-9cbd-6261706712a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B01_667042.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-10A TCGA-A2-A0CZ-10A-01D-A046-08 d189b48c-0064-4f88-875d-afd19b44a64a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-10A TCGA-A2-A0CZ-10A-01D-A047-09 35f16d37-4754-44ac-be64-8d30a7183dc1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-10A TCGA-A2-A0CZ-10A-01W-A053-08 fa5ba2c8-601a-49df-8fac-10b88fccc71f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-10A TCGA-A2-A0CZ-10A-01W-A055-09 fae549ea-9db2-46c2-9427-852db8158476 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-10A TCGA-A2-A0CZ-10A-01W-A055-09 fae549ea-9db2-46c2-9427-852db8158476 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-10A TCGA-A2-A0CZ-10A-01W-A055-09 fae549ea-9db2-46c2-9427-852db8158476 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-10A TCGA-A2-A0CZ-10A-01X-A052-08 cc48bd44-730e-4d82-85d9-fa722e9b4877 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0CZ TCGA-A2-A0CZ-10A TCGA-A2-A0CZ-10A-01X-A054-09 45584daf-5662-4775-ab1c-cd0a42bc78ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0CZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11D-A00Y-05 e9760cdc-71d0-42dc-9890-c6b6c24f82e3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11D-A00Y-05 e9760cdc-71d0-42dc-9890-c6b6c24f82e3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A2-A0D0-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11D-A00Y-05 e9760cdc-71d0-42dc-9890-c6b6c24f82e3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A2-A0D0-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11D-A00Y-05 e9760cdc-71d0-42dc-9890-c6b6c24f82e3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A2-A0D0-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11D-A011-01 ad8186c8-9dc3-40dd-92ea-4a952ddbad11 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11D-A011-01 ad8186c8-9dc3-40dd-92ea-4a952ddbad11 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B01_628314.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11D-A011-01 ad8186c8-9dc3-40dd-92ea-4a952ddbad11 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B01_628314.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11D-A011-01 ad8186c8-9dc3-40dd-92ea-4a952ddbad11 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B01_628314.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11D-A011-01 ad8186c8-9dc3-40dd-92ea-4a952ddbad11 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B01_628314.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11D-A011-01 ad8186c8-9dc3-40dd-92ea-4a952ddbad11 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B01_628314.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11D-A011-01 ad8186c8-9dc3-40dd-92ea-4a952ddbad11 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B01_628314.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11D-A011-01 ad8186c8-9dc3-40dd-92ea-4a952ddbad11 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B01_628314.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11D-A011-01 ad8186c8-9dc3-40dd-92ea-4a952ddbad11 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B01_628314.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11D-A015-09 7c867911-2196-4963-824c-afccc3f5c3aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11D-A016-08 cfad0035-3403-4da6-a4d7-42a338f90ff4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11D-A068-02 762c3963-d57f-4700-b9d2-e62b2a05bc48 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11D-A128-09 71fda5a9-7049-406f-9348-2c24f7ddf5f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11R-A00Z-07 bd51f90a-ec67-4a7d-87bf-9d85acd65d51 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11R-A00Z-07 bd51f90a-ec67-4a7d-87bf-9d85acd65d51 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011869_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11R-A00Z-07 bd51f90a-ec67-4a7d-87bf-9d85acd65d51 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011869_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11R-A00Z-07 bd51f90a-ec67-4a7d-87bf-9d85acd65d51 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011869_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11R-A00Z-07 bd51f90a-ec67-4a7d-87bf-9d85acd65d51 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446137.TCGA-A2-A0D0-01A-11R-A00Z-07.110824_UNC13-SN749_0098_AC03YVABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11R-A00Z-07 bd51f90a-ec67-4a7d-87bf-9d85acd65d51 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446147.TCGA-A2-A0D0-01A-11R-A00Z-07.110824_UNC13-SN749_0098_AC03YVABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11R-A00Z-07 bd51f90a-ec67-4a7d-87bf-9d85acd65d51 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446244.TCGA-A2-A0D0-01A-11R-A00Z-07.110824_UNC13-SN749_0098_AC03YVABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11R-A010-13 09c12c65-a1c2-465f-9d1c-c82d28225ee6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11R-A010-13 09c12c65-a1c2-465f-9d1c-c82d28225ee6 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0D0-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11R-A010-13 09c12c65-a1c2-465f-9d1c-c82d28225ee6 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0D0-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11W-A019-09 3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11W-A019-09 3f20d0fe-aaa1-40f1-b2c1-7f070f93aef5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11W-A020-08 bdcd25f4-3346-4437-bc08-c606b692f3f5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11X-A023-09 a3dcc25b-9384-43c9-ae11-019fd029bee9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-01A TCGA-A2-A0D0-01A-11X-A024-08 63302e47-6010-47cc-90c5-0616da10854c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-10A TCGA-A2-A0D0-10A-01D-A012-01 c5bc1dcd-13d7-4774-ba4d-a137254c4c8d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-10A TCGA-A2-A0D0-10A-01D-A012-01 c5bc1dcd-13d7-4774-ba4d-a137254c4c8d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D04_628328.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A2-A0D0 TCGA-A2-A0D0-10A TCGA-A2-A0D0-10A-01D-A012-01 c5bc1dcd-13d7-4774-ba4d-a137254c4c8d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D04_628328.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-10A TCGA-A2-A0D0-10A-01D-A012-01 c5bc1dcd-13d7-4774-ba4d-a137254c4c8d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D04_628328.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-10A TCGA-A2-A0D0-10A-01D-A012-01 c5bc1dcd-13d7-4774-ba4d-a137254c4c8d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D04_628328.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-10A TCGA-A2-A0D0-10A-01D-A012-01 c5bc1dcd-13d7-4774-ba4d-a137254c4c8d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D04_628328.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-10A TCGA-A2-A0D0-10A-01D-A012-01 c5bc1dcd-13d7-4774-ba4d-a137254c4c8d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D04_628328.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-10A TCGA-A2-A0D0-10A-01D-A012-01 c5bc1dcd-13d7-4774-ba4d-a137254c4c8d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D04_628328.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-10A TCGA-A2-A0D0-10A-01D-A012-01 c5bc1dcd-13d7-4774-ba4d-a137254c4c8d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D04_628328.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-10A TCGA-A2-A0D0-10A-01D-A017-09 ad8f436d-7f28-4a07-bb11-7cdfaff8b6c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-10A TCGA-A2-A0D0-10A-01D-A018-08 cc480e94-ef89-445a-834d-f41870d1e9b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-10A TCGA-A2-A0D0-10A-01D-A069-02 03068972-3e44-476f-8f00-c1758c739c4f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-10A TCGA-A2-A0D0-10A-01D-A128-09 780a0702-3e17-4768-bd37-77f09e427673 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-10A TCGA-A2-A0D0-10A-01W-A021-09 bbf1c43d-d7b3-4574-a074-d22ad537829c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-10A TCGA-A2-A0D0-10A-01W-A021-09 bbf1c43d-d7b3-4574-a074-d22ad537829c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-10A TCGA-A2-A0D0-10A-01W-A022-08 f699262d-0091-4315-9002-839671cde61d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-10A TCGA-A2-A0D0-10A-01X-A025-09 95495232-cccd-4cfa-b360-3a94739d1aad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D0 TCGA-A2-A0D0-10A TCGA-A2-A0D0-10A-01X-A026-08 1250ebb1-1f84-47ad-b013-2fc293b6c4a0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11D-A032-05 7724881c-5389-4b0c-8478-bf53267c425a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11D-A032-05 7724881c-5389-4b0c-8478-bf53267c425a DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A2-A0D1-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11D-A032-05 7724881c-5389-4b0c-8478-bf53267c425a DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A2-A0D1-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11D-A032-05 7724881c-5389-4b0c-8478-bf53267c425a DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A2-A0D1-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11D-A033-02 80495c07-05e9-49ae-8e37-afc0d3ab5e24 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11D-A036-01 bca3ec5f-f504-4f47-9359-6576d0ca164a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11D-A036-01 bca3ec5f-f504-4f47-9359-6576d0ca164a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B06_666866.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11D-A036-01 bca3ec5f-f504-4f47-9359-6576d0ca164a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B06_666866.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11D-A036-01 bca3ec5f-f504-4f47-9359-6576d0ca164a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B06_666866.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11D-A036-01 bca3ec5f-f504-4f47-9359-6576d0ca164a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B06_666866.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11D-A036-01 bca3ec5f-f504-4f47-9359-6576d0ca164a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B06_666866.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11D-A036-01 bca3ec5f-f504-4f47-9359-6576d0ca164a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B06_666866.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11D-A036-01 bca3ec5f-f504-4f47-9359-6576d0ca164a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B06_666866.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11D-A036-01 bca3ec5f-f504-4f47-9359-6576d0ca164a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B06_666866.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11D-A044-08 c1a48f84-0ed6-4f4c-bc25-d16e71b4bc35 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11D-A045-09 1383d20a-9099-4fa2-830e-27cc1de8279e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11D-A19H-09 e5593865-5f8e-4a4c-b36f-73fbe64d66da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11R-A034-07 01370d42-f75c-4532-9b9c-24ff7302b033 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11R-A034-07 01370d42-f75c-4532-9b9c-24ff7302b033 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012081_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11R-A034-07 01370d42-f75c-4532-9b9c-24ff7302b033 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012081_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11R-A034-07 01370d42-f75c-4532-9b9c-24ff7302b033 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012081_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11R-A034-07 01370d42-f75c-4532-9b9c-24ff7302b033 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_654572.TCGA-A2-A0D1-01A-11R-A034-07.110309_UNC12-SN629_0068_BB05LPABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11R-A034-07 01370d42-f75c-4532-9b9c-24ff7302b033 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_654594.TCGA-A2-A0D1-01A-11R-A034-07.110309_UNC12-SN629_0068_BB05LPABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11R-A034-07 01370d42-f75c-4532-9b9c-24ff7302b033 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_654642.TCGA-A2-A0D1-01A-11R-A034-07.110309_UNC12-SN629_0068_BB05LPABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11R-A035-13 b18dc3e3-8b78-459b-af51-954dff0b6419 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11R-A035-13 b18dc3e3-8b78-459b-af51-954dff0b6419 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0D1-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11R-A035-13 b18dc3e3-8b78-459b-af51-954dff0b6419 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0D1-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11W-A050-09 a762809c-15c9-485e-ad7a-ef28427750e9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11W-A050-09 a762809c-15c9-485e-ad7a-ef28427750e9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11W-A051-08 1c1907c4-c042-4346-9d72-9d9e933b8168 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11X-A048-08 c0e1b14b-c685-4a7f-8b3b-fedfa20bd932 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-01A TCGA-A2-A0D1-01A-11X-A049-09 2c78a396-a3a1-4340-a1c2-f379b19e655a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-10A TCGA-A2-A0D1-10A-01D-A031-02 e3132ab3-c351-465c-8066-558a85d220ad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-10A TCGA-A2-A0D1-10A-01D-A037-01 46a7cafa-1b8e-43e1-b196-3f71baf07c18 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-10A TCGA-A2-A0D1-10A-01D-A037-01 46a7cafa-1b8e-43e1-b196-3f71baf07c18 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D02_666976.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0D1 TCGA-A2-A0D1-10A TCGA-A2-A0D1-10A-01D-A037-01 46a7cafa-1b8e-43e1-b196-3f71baf07c18 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D02_666976.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-10A TCGA-A2-A0D1-10A-01D-A037-01 46a7cafa-1b8e-43e1-b196-3f71baf07c18 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D02_666976.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-10A TCGA-A2-A0D1-10A-01D-A037-01 46a7cafa-1b8e-43e1-b196-3f71baf07c18 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D02_666976.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-10A TCGA-A2-A0D1-10A-01D-A037-01 46a7cafa-1b8e-43e1-b196-3f71baf07c18 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D02_666976.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-10A TCGA-A2-A0D1-10A-01D-A037-01 46a7cafa-1b8e-43e1-b196-3f71baf07c18 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D02_666976.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-10A TCGA-A2-A0D1-10A-01D-A037-01 46a7cafa-1b8e-43e1-b196-3f71baf07c18 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D02_666976.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-10A TCGA-A2-A0D1-10A-01D-A037-01 46a7cafa-1b8e-43e1-b196-3f71baf07c18 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D02_666976.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-10A TCGA-A2-A0D1-10A-01D-A046-08 403fbdaf-0721-4268-adb2-295516fd8a58 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-10A TCGA-A2-A0D1-10A-01D-A047-09 02f21d38-e1e9-4126-b1a4-93cfd3b814da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-10A TCGA-A2-A0D1-10A-01D-A19H-09 c569741b-dad3-4042-b1b0-45d62eb6a967 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-10A TCGA-A2-A0D1-10A-01W-A053-08 748c745a-895b-4562-8cd3-c5459f553e50 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-10A TCGA-A2-A0D1-10A-01W-A055-09 12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-10A TCGA-A2-A0D1-10A-01W-A055-09 12fd8c6e-6a2e-4cf5-8a50-a2872d4cc7f9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-10A TCGA-A2-A0D1-10A-01X-A052-08 1076dfe1-2755-48d7-be04-5afa178efdf3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D1 TCGA-A2-A0D1-10A TCGA-A2-A0D1-10A-01X-A054-09 10e3529d-cb14-4622-a477-fc725ea6ebcb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21D-A032-05 0385860e-c228-4483-ae80-46605d06b5ba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21D-A032-05 0385860e-c228-4483-ae80-46605d06b5ba DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A2-A0D2-01A-21D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21D-A032-05 0385860e-c228-4483-ae80-46605d06b5ba DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A2-A0D2-01A-21D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21D-A032-05 0385860e-c228-4483-ae80-46605d06b5ba DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A2-A0D2-01A-21D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21D-A033-02 92b303cf-0c2a-4f54-a937-5abd9be4a0c2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21D-A036-01 3da4a808-275c-45fd-b9e4-81183ebeb0c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21D-A036-01 3da4a808-275c-45fd-b9e4-81183ebeb0c9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G11_666902.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21D-A036-01 3da4a808-275c-45fd-b9e4-81183ebeb0c9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G11_666902.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21D-A036-01 3da4a808-275c-45fd-b9e4-81183ebeb0c9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G11_666902.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21D-A036-01 3da4a808-275c-45fd-b9e4-81183ebeb0c9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G11_666902.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21D-A036-01 3da4a808-275c-45fd-b9e4-81183ebeb0c9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G11_666902.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21D-A036-01 3da4a808-275c-45fd-b9e4-81183ebeb0c9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G11_666902.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21D-A036-01 3da4a808-275c-45fd-b9e4-81183ebeb0c9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G11_666902.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21D-A036-01 3da4a808-275c-45fd-b9e4-81183ebeb0c9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G11_666902.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21D-A044-08 ce5edd33-dc94-43e8-b8e6-7bfa059abde1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21D-A045-09 6d35de83-209b-4168-80cf-f354be2d6ec3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21D-A128-09 51a5a15a-1551-469f-a5b0-09581ec47975 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21R-A034-07 2ad8d416-08a4-4e6f-947e-d74269d02ab1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21R-A034-07 2ad8d416-08a4-4e6f-947e-d74269d02ab1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012082_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21R-A034-07 2ad8d416-08a4-4e6f-947e-d74269d02ab1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012082_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21R-A034-07 2ad8d416-08a4-4e6f-947e-d74269d02ab1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012082_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21R-A034-07 2ad8d416-08a4-4e6f-947e-d74269d02ab1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_694340.TCGA-A2-A0D2-01A-21R-A034-07.110309_UNC12-SN629_0068_BB05LPABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21R-A034-07 2ad8d416-08a4-4e6f-947e-d74269d02ab1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_694358.TCGA-A2-A0D2-01A-21R-A034-07.110309_UNC12-SN629_0068_BB05LPABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21R-A034-07 2ad8d416-08a4-4e6f-947e-d74269d02ab1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_694408.TCGA-A2-A0D2-01A-21R-A034-07.110309_UNC12-SN629_0068_BB05LPABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21R-A035-13 c12d3eb6-8c20-4b63-b2b9-8f911314f0d5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21R-A035-13 c12d3eb6-8c20-4b63-b2b9-8f911314f0d5 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0D2-01A-21R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21R-A035-13 c12d3eb6-8c20-4b63-b2b9-8f911314f0d5 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0D2-01A-21R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21W-A050-09 05656575-69e7-4745-a89d-ca0568eb5559 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21W-A050-09 05656575-69e7-4745-a89d-ca0568eb5559 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21W-A050-09 05656575-69e7-4745-a89d-ca0568eb5559 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21W-A051-08 4c6a6a6c-d29c-402e-8727-127e919fd8ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21X-A048-08 8771995c-076d-4e40-a519-ac514af9af9b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-01A TCGA-A2-A0D2-01A-21X-A049-09 f5d4820e-168c-4d00-831e-0a570896c8ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-10A TCGA-A2-A0D2-10A-01D-A031-02 39b7315d-1a37-4b17-9b3f-0aeb453ce005 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-10A TCGA-A2-A0D2-10A-01D-A037-01 e0e50d5d-add8-4498-98e7-6a31bfed1952 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-10A TCGA-A2-A0D2-10A-01D-A037-01 e0e50d5d-add8-4498-98e7-6a31bfed1952 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F07_667002.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0D2 TCGA-A2-A0D2-10A TCGA-A2-A0D2-10A-01D-A037-01 e0e50d5d-add8-4498-98e7-6a31bfed1952 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F07_667002.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-10A TCGA-A2-A0D2-10A-01D-A037-01 e0e50d5d-add8-4498-98e7-6a31bfed1952 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F07_667002.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-10A TCGA-A2-A0D2-10A-01D-A037-01 e0e50d5d-add8-4498-98e7-6a31bfed1952 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F07_667002.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-10A TCGA-A2-A0D2-10A-01D-A037-01 e0e50d5d-add8-4498-98e7-6a31bfed1952 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F07_667002.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-10A TCGA-A2-A0D2-10A-01D-A037-01 e0e50d5d-add8-4498-98e7-6a31bfed1952 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F07_667002.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-10A TCGA-A2-A0D2-10A-01D-A037-01 e0e50d5d-add8-4498-98e7-6a31bfed1952 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F07_667002.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-10A TCGA-A2-A0D2-10A-01D-A037-01 e0e50d5d-add8-4498-98e7-6a31bfed1952 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F07_667002.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-10A TCGA-A2-A0D2-10A-01D-A046-08 d00256d9-c466-41b8-895a-a7e298bad765 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-10A TCGA-A2-A0D2-10A-01D-A047-09 c897e026-a529-4367-bd51-0f039b25ee89 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-10A TCGA-A2-A0D2-10A-01D-A128-09 1a1589cc-44a9-4c4f-a0af-ef3fd3c8e1f2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-10A TCGA-A2-A0D2-10A-01W-A053-08 abfad3ff-686b-4dfd-a712-5bcff412e8ea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-10A TCGA-A2-A0D2-10A-01W-A055-09 c830c663-95f6-40e0-9fd6-16586fa7d344 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-10A TCGA-A2-A0D2-10A-01W-A055-09 c830c663-95f6-40e0-9fd6-16586fa7d344 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-10A TCGA-A2-A0D2-10A-01W-A055-09 c830c663-95f6-40e0-9fd6-16586fa7d344 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-10A TCGA-A2-A0D2-10A-01X-A052-08 bff11554-a437-485d-aa00-7dfcc14d202e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D2 TCGA-A2-A0D2-10A TCGA-A2-A0D2-10A-01X-A054-09 3462c452-4454-4709-933e-a30cb62ec1aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11D-A10X-02 1dd4f93d-2fc0-4e0b-95f6-d0bf5820a93f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11D-A10Y-09 8183420e-7f44-4024-b3db-6b53ad293988 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11D-A10Y-09 8183420e-7f44-4024-b3db-6b53ad293988 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11D-A111-01 34a4a64c-d8a5-44c8-ae5e-3ef0258179d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11D-A111-01 34a4a64c-d8a5-44c8-ae5e-3ef0258179d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F11_735196.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11D-A111-01 34a4a64c-d8a5-44c8-ae5e-3ef0258179d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F11_735196.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11D-A111-01 34a4a64c-d8a5-44c8-ae5e-3ef0258179d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F11_735196.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11D-A111-01 34a4a64c-d8a5-44c8-ae5e-3ef0258179d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F11_735196.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11D-A111-01 34a4a64c-d8a5-44c8-ae5e-3ef0258179d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F11_735196.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11D-A111-01 34a4a64c-d8a5-44c8-ae5e-3ef0258179d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F11_735196.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11D-A111-01 34a4a64c-d8a5-44c8-ae5e-3ef0258179d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F11_735196.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11D-A111-01 34a4a64c-d8a5-44c8-ae5e-3ef0258179d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F11_735196.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11D-A112-05 37f5e534-18a1-49b1-b608-1deea3a8660a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11D-A112-05 37f5e534-18a1-49b1-b608-1deea3a8660a DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-A2-A0D3-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11D-A112-05 37f5e534-18a1-49b1-b608-1deea3a8660a DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-A2-A0D3-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11D-A112-05 37f5e534-18a1-49b1-b608-1deea3a8660a DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-A2-A0D3-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11R-A114-13 744b1411-405d-4d3d-9c97-22c6a7ac8b08 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11R-A114-13 744b1411-405d-4d3d-9c97-22c6a7ac8b08 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A0D3-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11R-A114-13 744b1411-405d-4d3d-9c97-22c6a7ac8b08 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A0D3-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11R-A115-07 eefe67c9-48a1-4381-a3ef-81b51e46c6df Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11R-A115-07 eefe67c9-48a1-4381-a3ef-81b51e46c6df Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012809_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11R-A115-07 eefe67c9-48a1-4381-a3ef-81b51e46c6df Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012809_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11R-A115-07 eefe67c9-48a1-4381-a3ef-81b51e46c6df Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012809_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11R-A115-07 eefe67c9-48a1-4381-a3ef-81b51e46c6df RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_447853.TCGA-A2-A0D3-01A-11R-A115-07.110620_UNC11-SN627_0109_AD0CNFABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11R-A115-07 eefe67c9-48a1-4381-a3ef-81b51e46c6df RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_447873.TCGA-A2-A0D3-01A-11R-A115-07.110620_UNC11-SN627_0109_AD0CNFABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11R-A115-07 eefe67c9-48a1-4381-a3ef-81b51e46c6df RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_447944.TCGA-A2-A0D3-01A-11R-A115-07.110620_UNC11-SN627_0109_AD0CNFABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-01A TCGA-A2-A0D3-01A-11W-A12T-09 53106d80-42d9-4a0a-a8a6-f7bd3fa1b178 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-10A TCGA-A2-A0D3-10A-01D-A10Z-02 01d029e9-3ea6-4763-84bb-de8462b86b74 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-10A TCGA-A2-A0D3-10A-01D-A110-09 e23f0ac2-c466-4431-a23a-94bf6a1f5db6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-10A TCGA-A2-A0D3-10A-01D-A110-09 e23f0ac2-c466-4431-a23a-94bf6a1f5db6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-10A TCGA-A2-A0D3-10A-01D-A113-01 5f40eae1-3e8c-48ee-9a35-e9b78b5d3e9d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-10A TCGA-A2-A0D3-10A-01D-A113-01 5f40eae1-3e8c-48ee-9a35-e9b78b5d3e9d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H02_735024.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-A2-A0D3 TCGA-A2-A0D3-10A TCGA-A2-A0D3-10A-01D-A113-01 5f40eae1-3e8c-48ee-9a35-e9b78b5d3e9d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H02_735024.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-10A TCGA-A2-A0D3-10A-01D-A113-01 5f40eae1-3e8c-48ee-9a35-e9b78b5d3e9d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H02_735024.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-10A TCGA-A2-A0D3-10A-01D-A113-01 5f40eae1-3e8c-48ee-9a35-e9b78b5d3e9d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H02_735024.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-10A TCGA-A2-A0D3-10A-01D-A113-01 5f40eae1-3e8c-48ee-9a35-e9b78b5d3e9d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H02_735024.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-10A TCGA-A2-A0D3-10A-01D-A113-01 5f40eae1-3e8c-48ee-9a35-e9b78b5d3e9d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H02_735024.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-10A TCGA-A2-A0D3-10A-01D-A113-01 5f40eae1-3e8c-48ee-9a35-e9b78b5d3e9d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H02_735024.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-10A TCGA-A2-A0D3-10A-01D-A113-01 5f40eae1-3e8c-48ee-9a35-e9b78b5d3e9d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H02_735024.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-A2-A0D3 TCGA-A2-A0D3-10A TCGA-A2-A0D3-10A-01W-A12U-09 620810f8-97da-4326-a985-9aa056bccd40 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11D-A00Y-05 f5baa850-e17b-47df-bcc9-1ae0b2b607dd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11D-A00Y-05 f5baa850-e17b-47df-bcc9-1ae0b2b607dd DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A2-A0D4-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11D-A00Y-05 f5baa850-e17b-47df-bcc9-1ae0b2b607dd DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A2-A0D4-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11D-A00Y-05 f5baa850-e17b-47df-bcc9-1ae0b2b607dd DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A2-A0D4-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11D-A011-01 a1b53759-99b5-4470-bb22-242ab09561dd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11D-A011-01 a1b53759-99b5-4470-bb22-242ab09561dd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F11_628286.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11D-A011-01 a1b53759-99b5-4470-bb22-242ab09561dd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F11_628286.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11D-A011-01 a1b53759-99b5-4470-bb22-242ab09561dd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F11_628286.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11D-A011-01 a1b53759-99b5-4470-bb22-242ab09561dd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F11_628286.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11D-A011-01 a1b53759-99b5-4470-bb22-242ab09561dd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F11_628286.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11D-A011-01 a1b53759-99b5-4470-bb22-242ab09561dd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F11_628286.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11D-A011-01 a1b53759-99b5-4470-bb22-242ab09561dd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F11_628286.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11D-A011-01 a1b53759-99b5-4470-bb22-242ab09561dd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F11_628286.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11D-A015-09 bbb49cdb-5db2-40bc-a434-8ca492ef185a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11D-A016-08 31511669-548a-4d71-8982-aa05281cc976 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11D-A068-02 e7611fc4-2b82-4cdb-8fc7-84194ffc1bf8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11R-A00Z-07 2522bd3d-f6b3-45df-b68f-577ffbf3a819 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11R-A00Z-07 2522bd3d-f6b3-45df-b68f-577ffbf3a819 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011883_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11R-A00Z-07 2522bd3d-f6b3-45df-b68f-577ffbf3a819 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011883_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11R-A00Z-07 2522bd3d-f6b3-45df-b68f-577ffbf3a819 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011883_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11R-A00Z-07 2522bd3d-f6b3-45df-b68f-577ffbf3a819 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_601668.TCGA-A2-A0D4-01A-11R-A00Z-07.111011_UNC12-SN629_0149_AB062VABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11R-A00Z-07 2522bd3d-f6b3-45df-b68f-577ffbf3a819 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_601702.TCGA-A2-A0D4-01A-11R-A00Z-07.111011_UNC12-SN629_0149_AB062VABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11R-A00Z-07 2522bd3d-f6b3-45df-b68f-577ffbf3a819 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_601779.TCGA-A2-A0D4-01A-11R-A00Z-07.111011_UNC12-SN629_0149_AB062VABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11R-A010-13 c2fa1ca2-8465-48cf-b861-0467b1e52ab1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11R-A038-13 1e2652d0-f520-4c55-b488-5d5bd315ad52 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11R-A038-13 1e2652d0-f520-4c55-b488-5d5bd315ad52 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0D4-01A-11R-A038-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11R-A038-13 1e2652d0-f520-4c55-b488-5d5bd315ad52 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0D4-01A-11R-A038-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11W-A019-09 f3accede-1716-4d44-bad4-5427a9ebd675 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11W-A019-09 f3accede-1716-4d44-bad4-5427a9ebd675 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11W-A020-08 42089db9-31b5-4457-9afe-a5184d806a7a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11X-A023-09 d1f4a27c-f64e-4098-8e57-99f7ad18ecfb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-01A TCGA-A2-A0D4-01A-11X-A024-08 2946c33b-3d39-4154-93d8-283a1e9cb6ab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-10A TCGA-A2-A0D4-10A-01D-A012-01 683e5d6c-bd95-4e62-aabf-e5d64b194aa8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-10A TCGA-A2-A0D4-10A-01D-A012-01 683e5d6c-bd95-4e62-aabf-e5d64b194aa8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B12_628398.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A2-A0D4 TCGA-A2-A0D4-10A TCGA-A2-A0D4-10A-01D-A012-01 683e5d6c-bd95-4e62-aabf-e5d64b194aa8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B12_628398.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-10A TCGA-A2-A0D4-10A-01D-A012-01 683e5d6c-bd95-4e62-aabf-e5d64b194aa8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B12_628398.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-10A TCGA-A2-A0D4-10A-01D-A012-01 683e5d6c-bd95-4e62-aabf-e5d64b194aa8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B12_628398.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-10A TCGA-A2-A0D4-10A-01D-A012-01 683e5d6c-bd95-4e62-aabf-e5d64b194aa8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B12_628398.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-10A TCGA-A2-A0D4-10A-01D-A012-01 683e5d6c-bd95-4e62-aabf-e5d64b194aa8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B12_628398.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-10A TCGA-A2-A0D4-10A-01D-A012-01 683e5d6c-bd95-4e62-aabf-e5d64b194aa8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B12_628398.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-10A TCGA-A2-A0D4-10A-01D-A012-01 683e5d6c-bd95-4e62-aabf-e5d64b194aa8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B12_628398.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-10A TCGA-A2-A0D4-10A-01D-A017-09 64e4bbc8-1bcb-49fb-b5ae-2bc647eccc4c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-10A TCGA-A2-A0D4-10A-01D-A018-08 6c693349-d8d1-4b4d-96cf-edf709da4dbb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-10A TCGA-A2-A0D4-10A-01D-A069-02 40110bf2-c6ee-409b-baff-c92f1a8fae57 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-10A TCGA-A2-A0D4-10A-01W-A021-09 9223d8eb-db2b-469a-94fc-857f5b62996c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-10A TCGA-A2-A0D4-10A-01W-A021-09 9223d8eb-db2b-469a-94fc-857f5b62996c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-10A TCGA-A2-A0D4-10A-01W-A022-08 88d78b9d-8845-4e16-9f36-313275d8d1d7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-10A TCGA-A2-A0D4-10A-01X-A025-09 d7a17307-d6d0-4297-9153-fa9ea092933f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0D4 TCGA-A2-A0D4-10A TCGA-A2-A0D4-10A-01X-A026-08 b84b0342-7869-4573-8eba-e20ad2e185ea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0D4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-01A TCGA-A2-A0EM-01A-11D-A032-05 6d2fad64-f2f5-4981-bac0-8d31c88e93c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-01A TCGA-A2-A0EM-01A-11D-A032-05 6d2fad64-f2f5-4981-bac0-8d31c88e93c1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A2-A0EM-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-01A TCGA-A2-A0EM-01A-11D-A032-05 6d2fad64-f2f5-4981-bac0-8d31c88e93c1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A2-A0EM-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-01A TCGA-A2-A0EM-01A-11D-A032-05 6d2fad64-f2f5-4981-bac0-8d31c88e93c1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A2-A0EM-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-01A TCGA-A2-A0EM-01A-11D-A033-02 080ddb6e-b137-44a5-9bcf-491d7f58586d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-01A TCGA-A2-A0EM-01A-11D-A036-01 3b12a9e9-a268-4469-b63e-2a735e164803 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-01A TCGA-A2-A0EM-01A-11D-A036-01 3b12a9e9-a268-4469-b63e-2a735e164803 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H07_667014.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0EM TCGA-A2-A0EM-01A TCGA-A2-A0EM-01A-11D-A036-01 3b12a9e9-a268-4469-b63e-2a735e164803 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H07_667014.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-01A TCGA-A2-A0EM-01A-11D-A036-01 3b12a9e9-a268-4469-b63e-2a735e164803 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H07_667014.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-01A TCGA-A2-A0EM-01A-11D-A036-01 3b12a9e9-a268-4469-b63e-2a735e164803 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H07_667014.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-01A TCGA-A2-A0EM-01A-11D-A036-01 3b12a9e9-a268-4469-b63e-2a735e164803 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H07_667014.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-01A TCGA-A2-A0EM-01A-11D-A036-01 3b12a9e9-a268-4469-b63e-2a735e164803 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H07_667014.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-01A TCGA-A2-A0EM-01A-11D-A036-01 3b12a9e9-a268-4469-b63e-2a735e164803 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H07_667014.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-01A TCGA-A2-A0EM-01A-11D-A036-01 3b12a9e9-a268-4469-b63e-2a735e164803 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H07_667014.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-01A TCGA-A2-A0EM-01A-11D-A044-08 b393dd6c-0ff5-4e0c-b929-4c6e08483c23 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-01A TCGA-A2-A0EM-01A-11D-A045-09 cd63164d-8f03-41bf-b1c3-40ca21c8a769 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-01A TCGA-A2-A0EM-01A-11R-A034-07 8d30a0ab-a41f-40ef-bd59-f738f4b39941 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-01A TCGA-A2-A0EM-01A-11R-A034-07 8d30a0ab-a41f-40ef-bd59-f738f4b39941 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012085_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A2-A0EM TCGA-A2-A0EM-01A TCGA-A2-A0EM-01A-11R-A034-07 8d30a0ab-a41f-40ef-bd59-f738f4b39941 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012085_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A2-A0EM TCGA-A2-A0EM-01A TCGA-A2-A0EM-01A-11R-A034-07 8d30a0ab-a41f-40ef-bd59-f738f4b39941 Expression-Genes AgilentG4502A_07_3 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-01A TCGA-A2-A0EM-01A-11X-A049-09 a8676255-99aa-4c18-9113-cfc243a849bb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-10A TCGA-A2-A0EM-10A-01D-A031-02 b9771ca5-83ed-4e9e-95ee-55b17e37ebf3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-10A TCGA-A2-A0EM-10A-01D-A037-01 b747a2d7-9885-411a-b1bb-3d0178f0252a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-10A TCGA-A2-A0EM-10A-01D-A037-01 b747a2d7-9885-411a-b1bb-3d0178f0252a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G01_666948.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0EM TCGA-A2-A0EM-10A TCGA-A2-A0EM-10A-01D-A037-01 b747a2d7-9885-411a-b1bb-3d0178f0252a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G01_666948.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-10A TCGA-A2-A0EM-10A-01D-A037-01 b747a2d7-9885-411a-b1bb-3d0178f0252a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G01_666948.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-10A TCGA-A2-A0EM-10A-01D-A037-01 b747a2d7-9885-411a-b1bb-3d0178f0252a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G01_666948.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-10A TCGA-A2-A0EM-10A-01D-A037-01 b747a2d7-9885-411a-b1bb-3d0178f0252a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G01_666948.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-10A TCGA-A2-A0EM-10A-01D-A037-01 b747a2d7-9885-411a-b1bb-3d0178f0252a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G01_666948.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-10A TCGA-A2-A0EM-10A-01D-A037-01 b747a2d7-9885-411a-b1bb-3d0178f0252a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G01_666948.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-10A TCGA-A2-A0EM-10A-01D-A037-01 b747a2d7-9885-411a-b1bb-3d0178f0252a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G01_666948.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-10A TCGA-A2-A0EM-10A-01D-A046-08 faa86ac1-c63f-4729-b346-d26340799fc2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-10A TCGA-A2-A0EM-10A-01D-A047-09 c1efdcc9-501c-49ae-8a05-8e29689cdeaf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-10A TCGA-A2-A0EM-10A-01W-A053-08 dbcca33c-e0cf-479f-97f8-c0388e282460 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-10A TCGA-A2-A0EM-10A-01W-A055-09 475ab163-650e-4139-b373-13cebd7a3f7d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-10A TCGA-A2-A0EM-10A-01W-A055-09 475ab163-650e-4139-b373-13cebd7a3f7d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-10A TCGA-A2-A0EM-10A-01X-A052-08 93651745-6ea7-4428-9cc9-285b5a96a9c3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EM TCGA-A2-A0EM-10A TCGA-A2-A0EM-10A-01X-A054-09 86a72331-262d-45e4-85e8-e3bb4548c856 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13D-A086-02 4c1a4fa8-f16f-4ad5-85c5-b9d5e31cc013 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13D-A087-01 38decb88-ca75-4a0c-bdd2-917ccdd60851 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13D-A087-01 38decb88-ca75-4a0c-bdd2-917ccdd60851 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F09_698140.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13D-A087-01 38decb88-ca75-4a0c-bdd2-917ccdd60851 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F09_698140.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13D-A087-01 38decb88-ca75-4a0c-bdd2-917ccdd60851 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F09_698140.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13D-A087-01 38decb88-ca75-4a0c-bdd2-917ccdd60851 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F09_698140.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13D-A087-01 38decb88-ca75-4a0c-bdd2-917ccdd60851 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F09_698140.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13D-A087-01 38decb88-ca75-4a0c-bdd2-917ccdd60851 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F09_698140.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13D-A087-01 38decb88-ca75-4a0c-bdd2-917ccdd60851 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F09_698140.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13D-A087-01 38decb88-ca75-4a0c-bdd2-917ccdd60851 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F09_698140.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13D-A088-05 e0f7930b-247a-455d-8a29-155b1e972ef2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13D-A099-09 12362ad7-6866-4e7a-9ec6-8a0a68df8896 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13D-A099-09 12362ad7-6866-4e7a-9ec6-8a0a68df8896 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13D-A099-09 12362ad7-6866-4e7a-9ec6-8a0a68df8896 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13D-A10P-05 e7d5f782-cc7e-4fe2-a0c1-933bfc978bbf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13D-A10P-05 e7d5f782-cc7e-4fe2-a0c1-933bfc978bbf DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791006_R05C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13D-A10P-05 e7d5f782-cc7e-4fe2-a0c1-933bfc978bbf DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791006_R05C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13D-A10P-05 e7d5f782-cc7e-4fe2-a0c1-933bfc978bbf DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-A2-A0EN-01A-13D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13D-A10P-05 e7d5f782-cc7e-4fe2-a0c1-933bfc978bbf DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-A2-A0EN-01A-13D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13R-A084-07 3ac4a6fe-9d2b-4c95-a74a-525b0328c7ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13R-A084-07 3ac4a6fe-9d2b-4c95-a74a-525b0328c7ed Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012598_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13R-A084-07 3ac4a6fe-9d2b-4c95-a74a-525b0328c7ed Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012598_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13R-A084-07 3ac4a6fe-9d2b-4c95-a74a-525b0328c7ed Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012598_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13R-A084-07 3ac4a6fe-9d2b-4c95-a74a-525b0328c7ed RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477094.TCGA-A2-A0EN-01A-13R-A084-07.110406_UNC13-SN749_0049_AC008AABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13R-A084-07 3ac4a6fe-9d2b-4c95-a74a-525b0328c7ed RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477099.TCGA-A2-A0EN-01A-13R-A084-07.110406_UNC13-SN749_0049_AC008AABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13R-A084-07 3ac4a6fe-9d2b-4c95-a74a-525b0328c7ed RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477205.TCGA-A2-A0EN-01A-13R-A084-07.110406_UNC13-SN749_0049_AC008AABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13R-A085-13 4dd0cf38-3167-4f26-b3d0-83c0e214a518 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13R-A085-13 4dd0cf38-3167-4f26-b3d0-83c0e214a518 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0EN-01A-13R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13R-A085-13 4dd0cf38-3167-4f26-b3d0-83c0e214a518 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0EN-01A-13R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13W-A097-09 e7259d56-5fda-4777-b26b-81869381dda5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-01A TCGA-A2-A0EN-01A-13X-A098-09 4495aae1-f9d0-422f-8e66-3d75db033b37 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-10A TCGA-A2-A0EN-10A-01D-A086-02 2e448f79-8bdf-4ed6-97f1-364e43a3deaf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-10A TCGA-A2-A0EN-10A-01D-A087-01 cbff355a-6579-415e-a9cc-adf4db5ccd41 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-10A TCGA-A2-A0EN-10A-01D-A087-01 cbff355a-6579-415e-a9cc-adf4db5ccd41 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C02_698022.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0EN TCGA-A2-A0EN-10A TCGA-A2-A0EN-10A-01D-A087-01 cbff355a-6579-415e-a9cc-adf4db5ccd41 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C02_698022.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-10A TCGA-A2-A0EN-10A-01D-A087-01 cbff355a-6579-415e-a9cc-adf4db5ccd41 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C02_698022.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-10A TCGA-A2-A0EN-10A-01D-A087-01 cbff355a-6579-415e-a9cc-adf4db5ccd41 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C02_698022.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-10A TCGA-A2-A0EN-10A-01D-A087-01 cbff355a-6579-415e-a9cc-adf4db5ccd41 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C02_698022.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-10A TCGA-A2-A0EN-10A-01D-A087-01 cbff355a-6579-415e-a9cc-adf4db5ccd41 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C02_698022.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-10A TCGA-A2-A0EN-10A-01D-A087-01 cbff355a-6579-415e-a9cc-adf4db5ccd41 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C02_698022.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-10A TCGA-A2-A0EN-10A-01D-A087-01 cbff355a-6579-415e-a9cc-adf4db5ccd41 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C02_698022.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-10A TCGA-A2-A0EN-10A-01D-A099-09 ad478c68-a18b-4529-ad7a-86039e6da6b1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-10A TCGA-A2-A0EN-10A-01D-A099-09 ad478c68-a18b-4529-ad7a-86039e6da6b1 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-10A TCGA-A2-A0EN-10A-01D-A099-09 ad478c68-a18b-4529-ad7a-86039e6da6b1 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-10A TCGA-A2-A0EN-10A-01W-A097-09 890ca588-57eb-46e6-9136-20852cbe341a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0EN TCGA-A2-A0EN-10A TCGA-A2-A0EN-10A-01X-A098-09 c3f9b48e-f213-4d1f-ae10-91f5722b98fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0EO TCGA-A2-A0EO-01A TCGA-A2-A0EO-01A-11D-A032-05 08e7782b-b4c5-480f-a932-f08c1906dfb2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EO TCGA-A2-A0EO-01A TCGA-A2-A0EO-01A-11D-A032-05 08e7782b-b4c5-480f-a932-f08c1906dfb2 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A2-A0EO-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A2-A0EO TCGA-A2-A0EO-01A TCGA-A2-A0EO-01A-11D-A032-05 08e7782b-b4c5-480f-a932-f08c1906dfb2 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A2-A0EO-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A2-A0EO TCGA-A2-A0EO-01A TCGA-A2-A0EO-01A-11D-A032-05 08e7782b-b4c5-480f-a932-f08c1906dfb2 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A2-A0EO-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A2-A0EO TCGA-A2-A0EO-01A TCGA-A2-A0EO-01A-11D-A033-02 e835e453-0578-413c-82d6-3e461f2a65b7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EO TCGA-A2-A0EO-01A TCGA-A2-A0EO-01A-11D-A036-01 8aba442b-9f10-4d63-8780-b3462cfc2945 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EO TCGA-A2-A0EO-01A TCGA-A2-A0EO-01A-11D-A036-01 8aba442b-9f10-4d63-8780-b3462cfc2945 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G08_666950.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0EO TCGA-A2-A0EO-01A TCGA-A2-A0EO-01A-11D-A036-01 8aba442b-9f10-4d63-8780-b3462cfc2945 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EO TCGA-A2-A0EO-01A TCGA-A2-A0EO-01A-11X-A049-09 80b42eeb-ef39-49ab-8bb3-6e96e06a3697 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EO TCGA-A2-A0EO-10A TCGA-A2-A0EO-10A-01D-A031-02 bd0c5923-f03a-463e-ae77-2e4276045fa9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EO TCGA-A2-A0EO-10A TCGA-A2-A0EO-10A-01D-A037-01 fb696b9d-7ef8-4433-b14c-11b459ba8ef6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EO TCGA-A2-A0EO-10A TCGA-A2-A0EO-10A-01D-A037-01 fb696b9d-7ef8-4433-b14c-11b459ba8ef6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H02_666912.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0EO TCGA-A2-A0EO-10A TCGA-A2-A0EO-10A-01D-A037-01 fb696b9d-7ef8-4433-b14c-11b459ba8ef6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H02_666912.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EO TCGA-A2-A0EO-10A TCGA-A2-A0EO-10A-01D-A037-01 fb696b9d-7ef8-4433-b14c-11b459ba8ef6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H02_666912.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EO TCGA-A2-A0EO-10A TCGA-A2-A0EO-10A-01D-A037-01 fb696b9d-7ef8-4433-b14c-11b459ba8ef6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H02_666912.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EO TCGA-A2-A0EO-10A TCGA-A2-A0EO-10A-01D-A037-01 fb696b9d-7ef8-4433-b14c-11b459ba8ef6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H02_666912.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EO TCGA-A2-A0EO-10A TCGA-A2-A0EO-10A-01D-A037-01 fb696b9d-7ef8-4433-b14c-11b459ba8ef6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H02_666912.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EO TCGA-A2-A0EO-10A TCGA-A2-A0EO-10A-01D-A037-01 fb696b9d-7ef8-4433-b14c-11b459ba8ef6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H02_666912.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EO TCGA-A2-A0EO-10A TCGA-A2-A0EO-10A-01D-A037-01 fb696b9d-7ef8-4433-b14c-11b459ba8ef6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H02_666912.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A0EO TCGA-A2-A0EO-10A TCGA-A2-A0EO-10A-01D-A046-08 6115efbf-c141-46b3-90aa-4490a55353a5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EO TCGA-A2-A0EO-10A TCGA-A2-A0EO-10A-01D-A047-09 803723ef-47b0-422a-bb10-4e490af51c30 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EO TCGA-A2-A0EO-10A TCGA-A2-A0EO-10A-01W-A053-08 bf6f2334-1325-482e-a88d-2b13809bf914 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EO TCGA-A2-A0EO-10A TCGA-A2-A0EO-10A-01W-A055-09 daf64f76-2c6e-4d95-a8d9-1e4034f8d529 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EO TCGA-A2-A0EO-10A TCGA-A2-A0EO-10A-01W-A055-09 daf64f76-2c6e-4d95-a8d9-1e4034f8d529 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0EO TCGA-A2-A0EO-10A TCGA-A2-A0EO-10A-01X-A052-08 ec3cb669-52e5-4a35-8c35-7bd8dac1a734 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EO TCGA-A2-A0EO-10A TCGA-A2-A0EO-10A-01X-A054-09 49c057b2-694b-43f1-b7bc-450ddf4f4461 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11D-A032-05 4e2de963-c26b-45c2-aeb8-f6ec4ab8917e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11D-A032-05 4e2de963-c26b-45c2-aeb8-f6ec4ab8917e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A2-A0EQ-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11D-A032-05 4e2de963-c26b-45c2-aeb8-f6ec4ab8917e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A2-A0EQ-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11D-A032-05 4e2de963-c26b-45c2-aeb8-f6ec4ab8917e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A2-A0EQ-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11D-A033-02 a638e6c0-b2ff-4573-a483-049d0d003abb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11D-A036-01 7b6fada0-555f-4234-9436-a498d03e7413 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11D-A036-01 7b6fada0-555f-4234-9436-a498d03e7413 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H01_666962.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11D-A036-01 7b6fada0-555f-4234-9436-a498d03e7413 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H01_666962.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11D-A036-01 7b6fada0-555f-4234-9436-a498d03e7413 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H01_666962.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11D-A036-01 7b6fada0-555f-4234-9436-a498d03e7413 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H01_666962.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11D-A036-01 7b6fada0-555f-4234-9436-a498d03e7413 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H01_666962.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11D-A036-01 7b6fada0-555f-4234-9436-a498d03e7413 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H01_666962.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11D-A036-01 7b6fada0-555f-4234-9436-a498d03e7413 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H01_666962.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11D-A036-01 7b6fada0-555f-4234-9436-a498d03e7413 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H01_666962.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11D-A044-08 7731273f-e762-4a5d-a572-32c7522863c3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11D-A045-09 fbd54e29-7d59-43d6-859a-acf38fbc33b6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11R-A034-07 a083b072-7c1e-4ed6-90cf-1e49d21df4cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11R-A034-07 a083b072-7c1e-4ed6-90cf-1e49d21df4cb Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012102_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11R-A034-07 a083b072-7c1e-4ed6-90cf-1e49d21df4cb Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012102_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11R-A034-07 a083b072-7c1e-4ed6-90cf-1e49d21df4cb Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012102_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11R-A034-07 a083b072-7c1e-4ed6-90cf-1e49d21df4cb RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_655613.TCGA-A2-A0EQ-01A-11R-A034-07.110309_UNC12-SN629_0068_BB05LPABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11R-A034-07 a083b072-7c1e-4ed6-90cf-1e49d21df4cb RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_655619.TCGA-A2-A0EQ-01A-11R-A034-07.110309_UNC12-SN629_0068_BB05LPABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11R-A034-07 a083b072-7c1e-4ed6-90cf-1e49d21df4cb RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_655699.TCGA-A2-A0EQ-01A-11R-A034-07.110309_UNC12-SN629_0068_BB05LPABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11R-A035-13 d9e955ca-8c29-4c22-8cd2-d333927523c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11R-A035-13 d9e955ca-8c29-4c22-8cd2-d333927523c4 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0EQ-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11R-A035-13 d9e955ca-8c29-4c22-8cd2-d333927523c4 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0EQ-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11W-A050-09 2c449ea9-c3ff-4726-8566-5933e2b7056d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11W-A050-09 2c449ea9-c3ff-4726-8566-5933e2b7056d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11W-A050-09 2c449ea9-c3ff-4726-8566-5933e2b7056d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11W-A051-08 7045e689-fae2-42c4-ad5b-89810f5a32e7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11X-A048-08 4d6134d8-f961-475f-8236-d5391ecc1c09 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-01A TCGA-A2-A0EQ-01A-11X-A049-09 c5e3e234-b8d9-4587-a298-ae41f3a6dd91 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-10A TCGA-A2-A0EQ-10A-01D-A031-02 47f8c73f-3ecf-4a3f-91e8-d2e4250c4984 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-10A TCGA-A2-A0EQ-10A-01D-A037-01 05295d21-726a-49b8-b2f1-077f20fa6f15 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-10A TCGA-A2-A0EQ-10A-01D-A037-01 05295d21-726a-49b8-b2f1-077f20fa6f15 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G09_666924.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0EQ TCGA-A2-A0EQ-10A TCGA-A2-A0EQ-10A-01D-A037-01 05295d21-726a-49b8-b2f1-077f20fa6f15 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G09_666924.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-10A TCGA-A2-A0EQ-10A-01D-A037-01 05295d21-726a-49b8-b2f1-077f20fa6f15 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G09_666924.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-10A TCGA-A2-A0EQ-10A-01D-A037-01 05295d21-726a-49b8-b2f1-077f20fa6f15 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G09_666924.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-10A TCGA-A2-A0EQ-10A-01D-A037-01 05295d21-726a-49b8-b2f1-077f20fa6f15 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G09_666924.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-10A TCGA-A2-A0EQ-10A-01D-A037-01 05295d21-726a-49b8-b2f1-077f20fa6f15 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G09_666924.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-10A TCGA-A2-A0EQ-10A-01D-A037-01 05295d21-726a-49b8-b2f1-077f20fa6f15 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G09_666924.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-10A TCGA-A2-A0EQ-10A-01D-A037-01 05295d21-726a-49b8-b2f1-077f20fa6f15 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G09_666924.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-10A TCGA-A2-A0EQ-10A-01D-A046-08 1e539b5f-bf60-48f8-ae1a-58dbecc99d8e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-10A TCGA-A2-A0EQ-10A-01D-A047-09 d9f6278a-388a-4e63-86f8-b57223d5d7e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-10A TCGA-A2-A0EQ-10A-01W-A053-08 c3208ce0-1850-4363-ad53-d4a74218d5f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-10A TCGA-A2-A0EQ-10A-01W-A055-09 282ea476-ac8e-4aa3-ac9e-49fced7a4eb2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-10A TCGA-A2-A0EQ-10A-01W-A055-09 282ea476-ac8e-4aa3-ac9e-49fced7a4eb2 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-10A TCGA-A2-A0EQ-10A-01W-A055-09 282ea476-ac8e-4aa3-ac9e-49fced7a4eb2 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-10A TCGA-A2-A0EQ-10A-01X-A052-08 18c95f1b-1dba-4eda-bd71-aeccb44c6238 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EQ TCGA-A2-A0EQ-10A TCGA-A2-A0EQ-10A-01X-A054-09 85241236-1919-445b-b9df-937c94d4edd7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21D-A032-05 07020b38-e5f4-4add-9054-cbeb50e75c9d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ER.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21D-A032-05 07020b38-e5f4-4add-9054-cbeb50e75c9d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A2-A0ER-01A-21D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21D-A032-05 07020b38-e5f4-4add-9054-cbeb50e75c9d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A2-A0ER-01A-21D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21D-A032-05 07020b38-e5f4-4add-9054-cbeb50e75c9d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A2-A0ER-01A-21D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21D-A033-02 5f6f450e-14e3-4ae3-b608-523a05e98603 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ER.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21D-A036-01 49f8fe03-b923-4bb7-b042-6cb4d6f6e2b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ER.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21D-A036-01 49f8fe03-b923-4bb7-b042-6cb4d6f6e2b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H03_666896.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21D-A036-01 49f8fe03-b923-4bb7-b042-6cb4d6f6e2b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H03_666896.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21D-A036-01 49f8fe03-b923-4bb7-b042-6cb4d6f6e2b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H03_666896.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21D-A036-01 49f8fe03-b923-4bb7-b042-6cb4d6f6e2b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H03_666896.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21D-A036-01 49f8fe03-b923-4bb7-b042-6cb4d6f6e2b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H03_666896.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21D-A036-01 49f8fe03-b923-4bb7-b042-6cb4d6f6e2b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H03_666896.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21D-A036-01 49f8fe03-b923-4bb7-b042-6cb4d6f6e2b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H03_666896.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21D-A036-01 49f8fe03-b923-4bb7-b042-6cb4d6f6e2b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H03_666896.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21D-A044-08 f77791c7-7522-46d3-83ce-8b350dd60263 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ER.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21D-A045-09 d29e391a-fde4-447e-8c66-ce36e0809adc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ER.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21R-A034-07 9c8e0865-894b-4a0b-83e4-c3e7a40e871b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ER.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21R-A034-07 9c8e0865-894b-4a0b-83e4-c3e7a40e871b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012086_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21R-A034-07 9c8e0865-894b-4a0b-83e4-c3e7a40e871b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012086_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21R-A034-07 9c8e0865-894b-4a0b-83e4-c3e7a40e871b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012086_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21R-A034-07 9c8e0865-894b-4a0b-83e4-c3e7a40e871b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_655395.TCGA-A2-A0ER-01A-21R-A034-07.110309_UNC12-SN629_0068_BB05LPABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21R-A034-07 9c8e0865-894b-4a0b-83e4-c3e7a40e871b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_655402.TCGA-A2-A0ER-01A-21R-A034-07.110309_UNC12-SN629_0068_BB05LPABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21R-A034-07 9c8e0865-894b-4a0b-83e4-c3e7a40e871b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_655473.TCGA-A2-A0ER-01A-21R-A034-07.110309_UNC12-SN629_0068_BB05LPABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21R-A035-13 7be8a73c-700e-47c6-bd8c-9a8f3cf4fc48 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ER.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21R-A035-13 7be8a73c-700e-47c6-bd8c-9a8f3cf4fc48 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0ER-01A-21R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21R-A035-13 7be8a73c-700e-47c6-bd8c-9a8f3cf4fc48 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0ER-01A-21R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21W-A050-09 31ed187e-9bfe-4ca3-8cbb-10c1e0184331 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ER.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21W-A050-09 31ed187e-9bfe-4ca3-8cbb-10c1e0184331 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21W-A050-09 31ed187e-9bfe-4ca3-8cbb-10c1e0184331 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21W-A051-08 c68660ef-dff8-43c0-ac17-ae33edada3a3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ER.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21X-A048-08 f6bd684d-ceb6-4ce7-93e7-486fa19b866a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ER.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-01A TCGA-A2-A0ER-01A-21X-A049-09 27189e1d-8638-4c6f-b448-eb2eb832293b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ER.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-10A TCGA-A2-A0ER-10A-01D-A031-02 6f135ce8-14aa-411b-ad6a-4da4034cc38c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ER.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-10A TCGA-A2-A0ER-10A-01D-A037-01 fd06c6b2-ad15-4091-a06e-109534d99c01 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ER.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-10A TCGA-A2-A0ER-10A-01D-A037-01 fd06c6b2-ad15-4091-a06e-109534d99c01 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G10_667026.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0ER TCGA-A2-A0ER-10A TCGA-A2-A0ER-10A-01D-A037-01 fd06c6b2-ad15-4091-a06e-109534d99c01 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G10_667026.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-10A TCGA-A2-A0ER-10A-01D-A037-01 fd06c6b2-ad15-4091-a06e-109534d99c01 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G10_667026.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-10A TCGA-A2-A0ER-10A-01D-A037-01 fd06c6b2-ad15-4091-a06e-109534d99c01 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G10_667026.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-10A TCGA-A2-A0ER-10A-01D-A037-01 fd06c6b2-ad15-4091-a06e-109534d99c01 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G10_667026.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-10A TCGA-A2-A0ER-10A-01D-A037-01 fd06c6b2-ad15-4091-a06e-109534d99c01 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G10_667026.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-10A TCGA-A2-A0ER-10A-01D-A037-01 fd06c6b2-ad15-4091-a06e-109534d99c01 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G10_667026.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-10A TCGA-A2-A0ER-10A-01D-A037-01 fd06c6b2-ad15-4091-a06e-109534d99c01 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G10_667026.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-10A TCGA-A2-A0ER-10A-01D-A046-08 0e1acf08-6cfb-4393-84e8-808364169255 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ER.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-10A TCGA-A2-A0ER-10A-01D-A047-09 e1e7fbae-8c50-463d-ad30-fedf8d22a5d3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ER.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-10A TCGA-A2-A0ER-10A-01W-A053-08 94ce0ac7-204e-4c79-9176-1d153a00f3f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ER.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-10A TCGA-A2-A0ER-10A-01W-A055-09 2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ER.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-10A TCGA-A2-A0ER-10A-01W-A055-09 2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-10A TCGA-A2-A0ER-10A-01W-A055-09 2bc2fdaf-fb2f-4bfd-9e20-e20edff6633a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-10A TCGA-A2-A0ER-10A-01X-A052-08 aedb795f-19ba-475e-85e9-ca80ada20ba2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ER.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ER TCGA-A2-A0ER-10A TCGA-A2-A0ER-10A-01X-A054-09 93024580-5de8-45e2-90d7-b37e5b70ddda Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ER.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11D-A10X-02 fd919f57-90d8-4b92-a9f7-e6204c48aa73 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ES.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11D-A10Y-09 64d42c62-5c2d-49f5-856e-72beef88044d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ES.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11D-A10Y-09 64d42c62-5c2d-49f5-856e-72beef88044d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11D-A111-01 3dc8a0fe-341f-4f09-af43-1e142208caba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ES.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11D-A111-01 3dc8a0fe-341f-4f09-af43-1e142208caba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A05_735120.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11D-A111-01 3dc8a0fe-341f-4f09-af43-1e142208caba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A05_735120.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11D-A111-01 3dc8a0fe-341f-4f09-af43-1e142208caba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A05_735120.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11D-A111-01 3dc8a0fe-341f-4f09-af43-1e142208caba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A05_735120.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11D-A111-01 3dc8a0fe-341f-4f09-af43-1e142208caba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A05_735120.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11D-A111-01 3dc8a0fe-341f-4f09-af43-1e142208caba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A05_735120.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11D-A111-01 3dc8a0fe-341f-4f09-af43-1e142208caba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A05_735120.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11D-A111-01 3dc8a0fe-341f-4f09-af43-1e142208caba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A05_735120.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11D-A112-05 8aab10e5-600d-4971-ac4f-63776ac13345 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ES.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11D-A112-05 8aab10e5-600d-4971-ac4f-63776ac13345 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-A2-A0ES-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11D-A112-05 8aab10e5-600d-4971-ac4f-63776ac13345 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-A2-A0ES-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11D-A112-05 8aab10e5-600d-4971-ac4f-63776ac13345 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-A2-A0ES-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11R-A114-13 d88a5f81-8ebe-4bbc-9937-9dc13e4c9d81 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ES.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11R-A114-13 d88a5f81-8ebe-4bbc-9937-9dc13e4c9d81 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A0ES-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11R-A114-13 d88a5f81-8ebe-4bbc-9937-9dc13e4c9d81 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A0ES-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11R-A115-07 698c9928-1aa8-4b48-9048-5675e5943c22 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ES.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11R-A115-07 698c9928-1aa8-4b48-9048-5675e5943c22 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012821_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11R-A115-07 698c9928-1aa8-4b48-9048-5675e5943c22 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012821_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11R-A115-07 698c9928-1aa8-4b48-9048-5675e5943c22 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012821_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11R-A115-07 698c9928-1aa8-4b48-9048-5675e5943c22 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442504.TCGA-A2-A0ES-01A-11R-A115-07.110620_UNC11-SN627_0109_AD0CNFABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11R-A115-07 698c9928-1aa8-4b48-9048-5675e5943c22 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442506.TCGA-A2-A0ES-01A-11R-A115-07.110620_UNC11-SN627_0109_AD0CNFABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11R-A115-07 698c9928-1aa8-4b48-9048-5675e5943c22 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442559.TCGA-A2-A0ES-01A-11R-A115-07.110620_UNC11-SN627_0109_AD0CNFABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-01A TCGA-A2-A0ES-01A-11W-A12T-09 f7289e1f-ab3e-4e29-ad38-428ff78038d0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ES.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-10A TCGA-A2-A0ES-10A-01D-A10Z-02 64ef0a79-d6ab-425b-8c18-39e6b77dda1b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ES.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-10A TCGA-A2-A0ES-10A-01D-A110-09 60275a8f-c7da-44a5-818e-56c6f99b8a5e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ES.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-10A TCGA-A2-A0ES-10A-01D-A110-09 60275a8f-c7da-44a5-818e-56c6f99b8a5e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-10A TCGA-A2-A0ES-10A-01D-A113-01 1b9f9344-6812-465a-a4bd-dec5451a060e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ES.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-10A TCGA-A2-A0ES-10A-01D-A113-01 1b9f9344-6812-465a-a4bd-dec5451a060e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A09_735006.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-A2-A0ES TCGA-A2-A0ES-10A TCGA-A2-A0ES-10A-01D-A113-01 1b9f9344-6812-465a-a4bd-dec5451a060e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A09_735006.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-10A TCGA-A2-A0ES-10A-01D-A113-01 1b9f9344-6812-465a-a4bd-dec5451a060e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A09_735006.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-10A TCGA-A2-A0ES-10A-01D-A113-01 1b9f9344-6812-465a-a4bd-dec5451a060e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A09_735006.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-10A TCGA-A2-A0ES-10A-01D-A113-01 1b9f9344-6812-465a-a4bd-dec5451a060e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A09_735006.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-10A TCGA-A2-A0ES-10A-01D-A113-01 1b9f9344-6812-465a-a4bd-dec5451a060e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A09_735006.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-10A TCGA-A2-A0ES-10A-01D-A113-01 1b9f9344-6812-465a-a4bd-dec5451a060e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A09_735006.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-10A TCGA-A2-A0ES-10A-01D-A113-01 1b9f9344-6812-465a-a4bd-dec5451a060e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A09_735006.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-A2-A0ES TCGA-A2-A0ES-10A TCGA-A2-A0ES-10A-01W-A12U-09 ebaebfae-ea13-4b94-8bbe-11ca0b560222 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ES.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31D-A032-05 035e1aa4-4cb9-4df8-b56b-7add8700e11b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31D-A032-05 035e1aa4-4cb9-4df8-b56b-7add8700e11b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A2-A0ET-01A-31D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31D-A032-05 035e1aa4-4cb9-4df8-b56b-7add8700e11b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A2-A0ET-01A-31D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31D-A032-05 035e1aa4-4cb9-4df8-b56b-7add8700e11b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A2-A0ET-01A-31D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31D-A033-02 93c5a511-bf4c-4308-b291-36b06cd2b2fc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31D-A036-01 fec7f250-896a-40c3-a6ed-82607bf7af4d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31D-A036-01 fec7f250-896a-40c3-a6ed-82607bf7af4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H05_667040.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31D-A036-01 fec7f250-896a-40c3-a6ed-82607bf7af4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H05_667040.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31D-A036-01 fec7f250-896a-40c3-a6ed-82607bf7af4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H05_667040.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31D-A036-01 fec7f250-896a-40c3-a6ed-82607bf7af4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H05_667040.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31D-A036-01 fec7f250-896a-40c3-a6ed-82607bf7af4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H05_667040.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31D-A036-01 fec7f250-896a-40c3-a6ed-82607bf7af4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H05_667040.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31D-A036-01 fec7f250-896a-40c3-a6ed-82607bf7af4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H05_667040.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31D-A036-01 fec7f250-896a-40c3-a6ed-82607bf7af4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H05_667040.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31D-A044-08 01ab6993-11fd-4165-b6a6-00114e3fac21 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31D-A045-09 f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31D-A045-09 f7b40023-4adc-4c7d-ae73-5c10ddcbc0fb Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31R-A034-07 4eb0c00d-595c-47ee-bcad-818c7723656d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31R-A034-07 4eb0c00d-595c-47ee-bcad-818c7723656d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012087_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31R-A034-07 4eb0c00d-595c-47ee-bcad-818c7723656d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012087_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31R-A034-07 4eb0c00d-595c-47ee-bcad-818c7723656d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012087_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31R-A034-07 4eb0c00d-595c-47ee-bcad-818c7723656d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_471777.TCGA-A2-A0ET-01A-31R-A034-07.110427_UNC15-SN850_0064_AB066WABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31R-A034-07 4eb0c00d-595c-47ee-bcad-818c7723656d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_472319.TCGA-A2-A0ET-01A-31R-A034-07.110427_UNC15-SN850_0064_AB066WABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31R-A034-07 4eb0c00d-595c-47ee-bcad-818c7723656d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_472345.TCGA-A2-A0ET-01A-31R-A034-07.110427_UNC15-SN850_0064_AB066WABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31R-A035-13 885e52d5-2f29-4aab-b1db-f6e3e6c03e88 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31R-A035-13 885e52d5-2f29-4aab-b1db-f6e3e6c03e88 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0ET-01A-31R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31R-A035-13 885e52d5-2f29-4aab-b1db-f6e3e6c03e88 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0ET-01A-31R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31W-A050-09 ecc41ef6-e7fb-4ced-b610-b8cc1f89b198 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31W-A051-08 08b94401-34e3-4012-a45a-f31248dbe08c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31X-A048-08 c5166b9b-d77d-462e-bc17-6f4ae5357202 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-01A TCGA-A2-A0ET-01A-31X-A049-09 174e5e20-6600-49f0-8e10-618f584a5219 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-10A TCGA-A2-A0ET-10A-01D-A031-02 af1d9fe0-71f7-461b-979a-8aa17cf54592 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-10A TCGA-A2-A0ET-10A-01D-A037-01 3b2b1480-aacd-49e7-97ca-703a755d7735 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-10A TCGA-A2-A0ET-10A-01D-A037-01 3b2b1480-aacd-49e7-97ca-703a755d7735 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D12_667020.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0ET TCGA-A2-A0ET-10A TCGA-A2-A0ET-10A-01D-A037-01 3b2b1480-aacd-49e7-97ca-703a755d7735 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-10A TCGA-A2-A0ET-10A-01W-A053-08 25c6304a-a674-42f4-b4ce-b25882eb673b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-10A TCGA-A2-A0ET-10A-01W-A055-09 2f6a3862-f59a-4b35-9444-11db363db47b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-10A TCGA-A2-A0ET-10A-01W-A055-09 2f6a3862-f59a-4b35-9444-11db363db47b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-10A TCGA-A2-A0ET-10A-01X-A052-08 ecbad3d7-9e09-4b64-a240-feca17b82e39 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ET TCGA-A2-A0ET-10A TCGA-A2-A0ET-10A-01X-A054-09 fcc31587-6702-49dd-93af-060014aeac65 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-01A TCGA-A2-A0EU-01A-22D-A058-05 963b0f3a-6109-4979-b621-3492c217ea1d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-01A TCGA-A2-A0EU-01A-22D-A059-01 d30e36ac-0c71-4210-bf07-334f2b5ba904 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-01A TCGA-A2-A0EU-01A-22D-A059-01 d30e36ac-0c71-4210-bf07-334f2b5ba904 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B10_697116.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-A2-A0EU TCGA-A2-A0EU-01A TCGA-A2-A0EU-01A-22D-A059-01 d30e36ac-0c71-4210-bf07-334f2b5ba904 SNP Genome_Wide_SNP_6 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1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-01A TCGA-A2-A0EU-01A-22D-A10P-05 b339f932-3d4f-49cc-b940-2cb44a6952e8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486014_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-01A TCGA-A2-A0EU-01A-22D-A10P-05 b339f932-3d4f-49cc-b940-2cb44a6952e8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486014_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-01A TCGA-A2-A0EU-01A-22D-A10P-05 b339f932-3d4f-49cc-b940-2cb44a6952e8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-A2-A0EU-01A-22D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-01A TCGA-A2-A0EU-01A-22D-A10P-05 b339f932-3d4f-49cc-b940-2cb44a6952e8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-A2-A0EU-01A-22D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-01A TCGA-A2-A0EU-01A-22R-A056-07 70633069-e9df-4fce-84df-6849f4b2693c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-01A TCGA-A2-A0EU-01A-22R-A056-07 70633069-e9df-4fce-84df-6849f4b2693c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012503_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-01A TCGA-A2-A0EU-01A-22R-A056-07 70633069-e9df-4fce-84df-6849f4b2693c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012503_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-01A TCGA-A2-A0EU-01A-22R-A056-07 70633069-e9df-4fce-84df-6849f4b2693c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012503_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-01A TCGA-A2-A0EU-01A-22R-A056-07 70633069-e9df-4fce-84df-6849f4b2693c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480264.TCGA-A2-A0EU-01A-22R-A056-07.110318_SN749_0046_AB039FABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-01A TCGA-A2-A0EU-01A-22R-A056-07 70633069-e9df-4fce-84df-6849f4b2693c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480280.TCGA-A2-A0EU-01A-22R-A056-07.110318_SN749_0046_AB039FABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-01A TCGA-A2-A0EU-01A-22R-A056-07 70633069-e9df-4fce-84df-6849f4b2693c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480312.TCGA-A2-A0EU-01A-22R-A056-07.110318_SN749_0046_AB039FABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-01A TCGA-A2-A0EU-01A-22R-A057-13 515ca648-124b-4f08-aa1c-5bd1d7971f52 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-01A TCGA-A2-A0EU-01A-22R-A057-13 515ca648-124b-4f08-aa1c-5bd1d7971f52 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0EU-01A-22R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-01A TCGA-A2-A0EU-01A-22R-A057-13 515ca648-124b-4f08-aa1c-5bd1d7971f52 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0EU-01A-22R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-01A TCGA-A2-A0EU-01A-22W-A070-08 cd56cc7b-67cd-47c5-9308-1cded97b784e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-01A TCGA-A2-A0EU-01A-22W-A071-09 de30da8f-903f-428e-a63d-59625fc858a9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-01A TCGA-A2-A0EU-01A-22W-A071-09 de30da8f-903f-428e-a63d-59625fc858a9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-01A TCGA-A2-A0EU-01A-22X-A072-08 7c0c24d1-12ff-48cd-a1ae-ff39309476fb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-01A TCGA-A2-A0EU-01A-22X-A073-09 54d78c7f-406b-49e7-a848-d558d174d91a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-10A TCGA-A2-A0EU-10A-01D-A059-01 84fb4f38-f4b1-4043-92ef-0a68ef6df2cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-10A TCGA-A2-A0EU-10A-01D-A059-01 84fb4f38-f4b1-4043-92ef-0a68ef6df2cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A06_697120.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-A2-A0EU TCGA-A2-A0EU-10A TCGA-A2-A0EU-10A-01D-A059-01 84fb4f38-f4b1-4043-92ef-0a68ef6df2cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A06_697120.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-10A TCGA-A2-A0EU-10A-01D-A059-01 84fb4f38-f4b1-4043-92ef-0a68ef6df2cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A06_697120.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-10A TCGA-A2-A0EU-10A-01D-A059-01 84fb4f38-f4b1-4043-92ef-0a68ef6df2cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A06_697120.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-10A TCGA-A2-A0EU-10A-01D-A059-01 84fb4f38-f4b1-4043-92ef-0a68ef6df2cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A06_697120.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-10A TCGA-A2-A0EU-10A-01D-A059-01 84fb4f38-f4b1-4043-92ef-0a68ef6df2cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A06_697120.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-10A TCGA-A2-A0EU-10A-01D-A059-01 84fb4f38-f4b1-4043-92ef-0a68ef6df2cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A06_697120.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-10A TCGA-A2-A0EU-10A-01D-A059-01 84fb4f38-f4b1-4043-92ef-0a68ef6df2cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A06_697120.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-10A TCGA-A2-A0EU-10A-01D-A060-02 11e97514-242b-4ce1-99ea-3830e6902ee3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-10A TCGA-A2-A0EU-10A-01D-A074-08 551da1b7-d839-4a1c-abd5-52211b3bed94 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-10A TCGA-A2-A0EU-10A-01D-A075-09 0a9cfc7c-720c-4de1-9af7-0f4925e736da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-10A TCGA-A2-A0EU-10A-01W-A070-08 130c8252-3b0c-4c61-8d7c-90888be88b64 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-10A TCGA-A2-A0EU-10A-01W-A071-09 1583a7c5-c835-44fa-918a-1448abf6533d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-10A TCGA-A2-A0EU-10A-01W-A071-09 1583a7c5-c835-44fa-918a-1448abf6533d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-10A TCGA-A2-A0EU-10A-01X-A072-08 b5191cb0-3d62-43bb-9026-ece170fe25c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0EU TCGA-A2-A0EU-10A TCGA-A2-A0EU-10A-01X-A073-09 f1536eab-ee18-46cb-b3be-249a20ea7df7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11D-A032-05 c95e8a1a-97c4-41e0-9030-8de6645b0bb4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11D-A032-05 c95e8a1a-97c4-41e0-9030-8de6645b0bb4 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A2-A0EV-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11D-A032-05 c95e8a1a-97c4-41e0-9030-8de6645b0bb4 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A2-A0EV-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11D-A032-05 c95e8a1a-97c4-41e0-9030-8de6645b0bb4 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A2-A0EV-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11D-A033-02 2fc92b07-3686-492c-8373-d7f343ac27c7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11D-A036-01 2ee9b4c3-15a5-4766-b762-ad8a96dc08f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11D-A036-01 2ee9b4c3-15a5-4766-b762-ad8a96dc08f8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A07_666928.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11D-A036-01 2ee9b4c3-15a5-4766-b762-ad8a96dc08f8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A07_666928.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11D-A036-01 2ee9b4c3-15a5-4766-b762-ad8a96dc08f8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A07_666928.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11D-A036-01 2ee9b4c3-15a5-4766-b762-ad8a96dc08f8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A07_666928.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11D-A036-01 2ee9b4c3-15a5-4766-b762-ad8a96dc08f8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A07_666928.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11D-A036-01 2ee9b4c3-15a5-4766-b762-ad8a96dc08f8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A07_666928.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11D-A036-01 2ee9b4c3-15a5-4766-b762-ad8a96dc08f8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A07_666928.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11D-A036-01 2ee9b4c3-15a5-4766-b762-ad8a96dc08f8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A07_666928.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11D-A044-08 a4dab70e-fa89-4160-b8b1-b5ba8513bf42 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11D-A045-09 434dc566-8639-4b37-8e17-4c5a89fd5ea3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11R-A034-07 75cd6423-52b8-4d29-97de-1fe2583dbac1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11R-A034-07 75cd6423-52b8-4d29-97de-1fe2583dbac1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012103_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11R-A034-07 75cd6423-52b8-4d29-97de-1fe2583dbac1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012103_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11R-A034-07 75cd6423-52b8-4d29-97de-1fe2583dbac1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012103_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11R-A034-07 75cd6423-52b8-4d29-97de-1fe2583dbac1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_471707.TCGA-A2-A0EV-01A-11R-A034-07.110427_UNC15-SN850_0064_AB066WABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11R-A034-07 75cd6423-52b8-4d29-97de-1fe2583dbac1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_471719.TCGA-A2-A0EV-01A-11R-A034-07.110427_UNC15-SN850_0064_AB066WABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11R-A034-07 75cd6423-52b8-4d29-97de-1fe2583dbac1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_471913.TCGA-A2-A0EV-01A-11R-A034-07.110427_UNC15-SN850_0064_AB066WABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11R-A035-13 102c3564-18e7-4fe0-9d89-2dace29fd487 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11R-A035-13 102c3564-18e7-4fe0-9d89-2dace29fd487 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0EV-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11R-A035-13 102c3564-18e7-4fe0-9d89-2dace29fd487 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0EV-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11W-A050-09 9433bf4f-23ba-4fe7-9503-1ad243d74225 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11W-A050-09 9433bf4f-23ba-4fe7-9503-1ad243d74225 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11W-A051-08 4620d0c2-0a34-4fba-ab65-ac26d128089c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11X-A048-08 48db1812-63c8-4e55-9f8d-04f57904a63f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-01A TCGA-A2-A0EV-01A-11X-A049-09 aa85bf74-6049-42f8-a69d-2f02ae4461b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-10A TCGA-A2-A0EV-10A-01D-A031-02 88d53a59-a892-4ba7-82b2-960a0dab2c11 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-10A TCGA-A2-A0EV-10A-01D-A037-01 b2b5885f-5129-415f-9c57-f65601d84c5f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-10A TCGA-A2-A0EV-10A-01D-A037-01 b2b5885f-5129-415f-9c57-f65601d84c5f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E11_666978.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0EV TCGA-A2-A0EV-10A TCGA-A2-A0EV-10A-01D-A037-01 b2b5885f-5129-415f-9c57-f65601d84c5f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E11_666978.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-10A TCGA-A2-A0EV-10A-01D-A037-01 b2b5885f-5129-415f-9c57-f65601d84c5f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E11_666978.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-10A TCGA-A2-A0EV-10A-01D-A037-01 b2b5885f-5129-415f-9c57-f65601d84c5f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E11_666978.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-10A TCGA-A2-A0EV-10A-01D-A037-01 b2b5885f-5129-415f-9c57-f65601d84c5f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E11_666978.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-10A TCGA-A2-A0EV-10A-01D-A037-01 b2b5885f-5129-415f-9c57-f65601d84c5f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E11_666978.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-10A TCGA-A2-A0EV-10A-01D-A037-01 b2b5885f-5129-415f-9c57-f65601d84c5f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E11_666978.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-10A TCGA-A2-A0EV-10A-01D-A037-01 b2b5885f-5129-415f-9c57-f65601d84c5f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E11_666978.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-10A TCGA-A2-A0EV-10A-01D-A046-08 6cea3d83-772b-443b-821f-dea9853833d2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-10A TCGA-A2-A0EV-10A-01D-A047-09 adc416f5-d241-41e8-a372-715856e433d5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-10A TCGA-A2-A0EV-10A-01W-A053-08 e79f7772-fbdf-407f-b163-180442a8e4b3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-10A TCGA-A2-A0EV-10A-01W-A055-09 633b376d-d59f-4f31-8d1a-0b1d89650a8e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-10A TCGA-A2-A0EV-10A-01W-A055-09 633b376d-d59f-4f31-8d1a-0b1d89650a8e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-10A TCGA-A2-A0EV-10A-01X-A052-08 427314f8-9be5-40b6-a2fb-56bd91025d1c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EV TCGA-A2-A0EV-10A TCGA-A2-A0EV-10A-01X-A054-09 05aa5554-7dfe-48a7-b3a7-0e95ca2cd21c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21D-A10X-02 66295d5b-227d-437c-92e6-94d9867e4e90 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21D-A10Y-09 a045a04e-4f7b-4f9a-a733-47ad24475496 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21D-A10Y-09 a045a04e-4f7b-4f9a-a733-47ad24475496 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21D-A111-01 581771be-7430-4032-8cec-55b339d22c49 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21D-A111-01 581771be-7430-4032-8cec-55b339d22c49 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A06_735134.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21D-A111-01 581771be-7430-4032-8cec-55b339d22c49 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A06_735134.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21D-A111-01 581771be-7430-4032-8cec-55b339d22c49 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A06_735134.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21D-A111-01 581771be-7430-4032-8cec-55b339d22c49 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A06_735134.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21D-A111-01 581771be-7430-4032-8cec-55b339d22c49 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A06_735134.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21D-A111-01 581771be-7430-4032-8cec-55b339d22c49 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A06_735134.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21D-A111-01 581771be-7430-4032-8cec-55b339d22c49 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A06_735134.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21D-A111-01 581771be-7430-4032-8cec-55b339d22c49 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A06_735134.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21D-A112-05 42c7d403-a4b2-4f24-b272-2e5298303ad3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21D-A112-05 42c7d403-a4b2-4f24-b272-2e5298303ad3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-A2-A0EW-01A-21D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21D-A112-05 42c7d403-a4b2-4f24-b272-2e5298303ad3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-A2-A0EW-01A-21D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21D-A112-05 42c7d403-a4b2-4f24-b272-2e5298303ad3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-A2-A0EW-01A-21D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21R-A114-13 54251b19-f837-4043-a529-47f6227bb3e0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21R-A114-13 54251b19-f837-4043-a529-47f6227bb3e0 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A0EW-01A-21R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21R-A114-13 54251b19-f837-4043-a529-47f6227bb3e0 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A0EW-01A-21R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21R-A115-07 5bf6cf0d-8d00-4a50-b239-4b9d8f3e51b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21R-A115-07 5bf6cf0d-8d00-4a50-b239-4b9d8f3e51b9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012832_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21R-A115-07 5bf6cf0d-8d00-4a50-b239-4b9d8f3e51b9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012832_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21R-A115-07 5bf6cf0d-8d00-4a50-b239-4b9d8f3e51b9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012832_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21R-A115-07 5bf6cf0d-8d00-4a50-b239-4b9d8f3e51b9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442502.TCGA-A2-A0EW-01A-21R-A115-07.110620_UNC11-SN627_0109_AD0CNFABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21R-A115-07 5bf6cf0d-8d00-4a50-b239-4b9d8f3e51b9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442508.TCGA-A2-A0EW-01A-21R-A115-07.110620_UNC11-SN627_0109_AD0CNFABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21R-A115-07 5bf6cf0d-8d00-4a50-b239-4b9d8f3e51b9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442571.TCGA-A2-A0EW-01A-21R-A115-07.110620_UNC11-SN627_0109_AD0CNFABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-01A TCGA-A2-A0EW-01A-21W-A12T-09 3d7e2520-a8ac-46d3-bac3-b4d7a093588a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-10A TCGA-A2-A0EW-10A-01D-A10Z-02 363902b4-74ac-4824-937a-e073d8a35c1c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-10A TCGA-A2-A0EW-10A-01D-A110-09 7ada2974-e227-405b-82c2-53909e722858 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-10A TCGA-A2-A0EW-10A-01D-A110-09 7ada2974-e227-405b-82c2-53909e722858 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-10A TCGA-A2-A0EW-10A-01D-A113-01 6b1058a6-1add-44db-bbe5-8b22157ca75f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-10A TCGA-A2-A0EW-10A-01D-A113-01 6b1058a6-1add-44db-bbe5-8b22157ca75f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A10_735078.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-A2-A0EW TCGA-A2-A0EW-10A TCGA-A2-A0EW-10A-01D-A113-01 6b1058a6-1add-44db-bbe5-8b22157ca75f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A10_735078.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-10A TCGA-A2-A0EW-10A-01D-A113-01 6b1058a6-1add-44db-bbe5-8b22157ca75f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A10_735078.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-10A TCGA-A2-A0EW-10A-01D-A113-01 6b1058a6-1add-44db-bbe5-8b22157ca75f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A10_735078.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-10A TCGA-A2-A0EW-10A-01D-A113-01 6b1058a6-1add-44db-bbe5-8b22157ca75f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A10_735078.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-10A TCGA-A2-A0EW-10A-01D-A113-01 6b1058a6-1add-44db-bbe5-8b22157ca75f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A10_735078.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-10A TCGA-A2-A0EW-10A-01D-A113-01 6b1058a6-1add-44db-bbe5-8b22157ca75f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A10_735078.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-10A TCGA-A2-A0EW-10A-01D-A113-01 6b1058a6-1add-44db-bbe5-8b22157ca75f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A10_735078.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-A2-A0EW TCGA-A2-A0EW-10A TCGA-A2-A0EW-10A-01W-A12U-09 7b822da2-eabf-4689-8065-8996c903946d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0EX TCGA-A2-A0EX-01A TCGA-A2-A0EX-01A-21D-A032-05 7026ffab-3536-4fca-b5c5-fb4d4eeedb4b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EX TCGA-A2-A0EX-01A TCGA-A2-A0EX-01A-21D-A032-05 7026ffab-3536-4fca-b5c5-fb4d4eeedb4b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A2-A0EX-01A-21D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A2-A0EX TCGA-A2-A0EX-01A TCGA-A2-A0EX-01A-21D-A032-05 7026ffab-3536-4fca-b5c5-fb4d4eeedb4b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A2-A0EX-01A-21D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A2-A0EX TCGA-A2-A0EX-01A TCGA-A2-A0EX-01A-21D-A032-05 7026ffab-3536-4fca-b5c5-fb4d4eeedb4b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A2-A0EX-01A-21D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A2-A0EX TCGA-A2-A0EX-01A TCGA-A2-A0EX-01A-21D-A033-02 afa720c1-4f24-442c-a253-5ab3f56696d0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EX TCGA-A2-A0EX-01A TCGA-A2-A0EX-01A-21D-A036-01 5382306d-84ce-4839-acb5-ba11a8f8cea5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EX TCGA-A2-A0EX-01A TCGA-A2-A0EX-01A-21D-A036-01 5382306d-84ce-4839-acb5-ba11a8f8cea5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A09_667038.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0EX TCGA-A2-A0EX-01A TCGA-A2-A0EX-01A-21D-A036-01 5382306d-84ce-4839-acb5-ba11a8f8cea5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A09_667038.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EX TCGA-A2-A0EX-01A TCGA-A2-A0EX-01A-21D-A036-01 5382306d-84ce-4839-acb5-ba11a8f8cea5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A09_667038.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EX TCGA-A2-A0EX-01A TCGA-A2-A0EX-01A-21D-A036-01 5382306d-84ce-4839-acb5-ba11a8f8cea5 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0EX TCGA-A2-A0EX-01A TCGA-A2-A0EX-01A-21W-A051-08 b0c6d456-fc18-438c-a5bc-67409ae2ed57 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EX TCGA-A2-A0EX-01A TCGA-A2-A0EX-01A-21X-A048-08 4d7d2d50-af0a-4e29-a36e-81688f92b8a1 Complete Clinical Set bio 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1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EX TCGA-A2-A0EX-10A TCGA-A2-A0EX-10A-01D-A037-01 f5373054-f357-4343-ac77-c043ab1c97e9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EX TCGA-A2-A0EX-10A TCGA-A2-A0EX-10A-01D-A037-01 f5373054-f357-4343-ac77-c043ab1c97e9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F12_667034.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0EX TCGA-A2-A0EX-10A TCGA-A2-A0EX-10A-01D-A037-01 f5373054-f357-4343-ac77-c043ab1c97e9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F12_667034.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EX TCGA-A2-A0EX-10A TCGA-A2-A0EX-10A-01D-A037-01 f5373054-f357-4343-ac77-c043ab1c97e9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F12_667034.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EX TCGA-A2-A0EX-10A TCGA-A2-A0EX-10A-01D-A037-01 f5373054-f357-4343-ac77-c043ab1c97e9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F12_667034.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EX TCGA-A2-A0EX-10A TCGA-A2-A0EX-10A-01D-A037-01 f5373054-f357-4343-ac77-c043ab1c97e9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F12_667034.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EX TCGA-A2-A0EX-10A TCGA-A2-A0EX-10A-01D-A037-01 f5373054-f357-4343-ac77-c043ab1c97e9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F12_667034.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EX TCGA-A2-A0EX-10A TCGA-A2-A0EX-10A-01D-A037-01 f5373054-f357-4343-ac77-c043ab1c97e9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F12_667034.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EX TCGA-A2-A0EX-10A TCGA-A2-A0EX-10A-01D-A037-01 f5373054-f357-4343-ac77-c043ab1c97e9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F12_667034.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A0EX TCGA-A2-A0EX-10A TCGA-A2-A0EX-10A-01D-A046-08 48f0bd74-1d32-4967-9be7-591f341ea016 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EX TCGA-A2-A0EX-10A TCGA-A2-A0EX-10A-01D-A047-09 3ec7504f-b12c-466b-8626-8b429306e3af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EX TCGA-A2-A0EX-10A TCGA-A2-A0EX-10A-01W-A053-08 968fc93a-8f2a-4258-b585-abd8cf348851 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EX TCGA-A2-A0EX-10A TCGA-A2-A0EX-10A-01W-A055-09 add72fe8-59ed-4a39-a37c-4f463a978acf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EX TCGA-A2-A0EX-10A TCGA-A2-A0EX-10A-01W-A055-09 add72fe8-59ed-4a39-a37c-4f463a978acf Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0EX TCGA-A2-A0EX-10A TCGA-A2-A0EX-10A-01X-A052-08 5a5c3607-5075-4926-a7db-9b6cdae78943 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EX TCGA-A2-A0EX-10A TCGA-A2-A0EX-10A-01X-A054-09 836691d3-c0a0-410c-926f-3404e9972583 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11D-A032-05 ee3c5255-501b-4562-931b-a708810148d9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11D-A032-05 ee3c5255-501b-4562-931b-a708810148d9 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A2-A0EY-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11D-A032-05 ee3c5255-501b-4562-931b-a708810148d9 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A2-A0EY-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11D-A032-05 ee3c5255-501b-4562-931b-a708810148d9 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A2-A0EY-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11D-A033-02 0eeba2a7-119a-4d0b-b184-77ce0c3c5b4d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11D-A036-01 93f09df2-f3c1-43d6-9c79-4751740bfa45 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11D-A036-01 93f09df2-f3c1-43d6-9c79-4751740bfa45 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H08_667018.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11D-A036-01 93f09df2-f3c1-43d6-9c79-4751740bfa45 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H08_667018.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11D-A036-01 93f09df2-f3c1-43d6-9c79-4751740bfa45 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H08_667018.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11D-A036-01 93f09df2-f3c1-43d6-9c79-4751740bfa45 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H08_667018.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11D-A036-01 93f09df2-f3c1-43d6-9c79-4751740bfa45 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H08_667018.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11D-A036-01 93f09df2-f3c1-43d6-9c79-4751740bfa45 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H08_667018.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11D-A036-01 93f09df2-f3c1-43d6-9c79-4751740bfa45 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H08_667018.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11D-A036-01 93f09df2-f3c1-43d6-9c79-4751740bfa45 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H08_667018.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11D-A044-08 56e5f6f1-e53a-4eae-b193-d28151a98384 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11D-A045-09 3ba0de53-6d7c-46cb-b033-422c7986d821 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11D-A19H-09 01658141-8398-4585-9f0f-8355dd9b0604 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11R-A034-07 4f1ffb0e-b2f8-42ae-86cb-bbd3405014f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11R-A034-07 4f1ffb0e-b2f8-42ae-86cb-bbd3405014f6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012089_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11R-A034-07 4f1ffb0e-b2f8-42ae-86cb-bbd3405014f6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012089_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11R-A034-07 4f1ffb0e-b2f8-42ae-86cb-bbd3405014f6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012089_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11R-A034-07 4f1ffb0e-b2f8-42ae-86cb-bbd3405014f6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_471671.TCGA-A2-A0EY-01A-11R-A034-07.110427_UNC15-SN850_0064_AB066WABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11R-A034-07 4f1ffb0e-b2f8-42ae-86cb-bbd3405014f6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_471695.TCGA-A2-A0EY-01A-11R-A034-07.110427_UNC15-SN850_0064_AB066WABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11R-A034-07 4f1ffb0e-b2f8-42ae-86cb-bbd3405014f6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_472109.TCGA-A2-A0EY-01A-11R-A034-07.110427_UNC15-SN850_0064_AB066WABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11R-A035-13 00354d33-c6b3-45b0-8a21-4a8c8a7df3a5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11R-A035-13 00354d33-c6b3-45b0-8a21-4a8c8a7df3a5 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0EY-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11R-A035-13 00354d33-c6b3-45b0-8a21-4a8c8a7df3a5 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0EY-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11W-A050-09 a8cde596-e3f5-4b20-9e7f-45d079893176 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11W-A050-09 a8cde596-e3f5-4b20-9e7f-45d079893176 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11W-A051-08 d4834f5c-ec13-4b63-9c8c-b49ca3b78787 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11X-A048-08 ee9191e0-3c96-4040-81bc-c223a3e703b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-01A TCGA-A2-A0EY-01A-11X-A049-09 2b265e12-e9ed-4c85-b692-f8c9a1b38bbf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-10A TCGA-A2-A0EY-10A-01D-A031-02 4cfaaa13-b9ad-4623-8e27-3c9cd0d66ce6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-10A TCGA-A2-A0EY-10A-01D-A037-01 57306d84-a02b-44c5-af64-bfc67ebd2ceb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-10A TCGA-A2-A0EY-10A-01D-A037-01 57306d84-a02b-44c5-af64-bfc67ebd2ceb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G12_666868.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A2-A0EY TCGA-A2-A0EY-10A TCGA-A2-A0EY-10A-01D-A037-01 57306d84-a02b-44c5-af64-bfc67ebd2ceb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G12_666868.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-10A TCGA-A2-A0EY-10A-01D-A037-01 57306d84-a02b-44c5-af64-bfc67ebd2ceb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G12_666868.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-10A TCGA-A2-A0EY-10A-01D-A037-01 57306d84-a02b-44c5-af64-bfc67ebd2ceb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G12_666868.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-10A TCGA-A2-A0EY-10A-01D-A037-01 57306d84-a02b-44c5-af64-bfc67ebd2ceb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G12_666868.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-10A TCGA-A2-A0EY-10A-01D-A037-01 57306d84-a02b-44c5-af64-bfc67ebd2ceb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G12_666868.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-10A TCGA-A2-A0EY-10A-01D-A037-01 57306d84-a02b-44c5-af64-bfc67ebd2ceb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G12_666868.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-10A TCGA-A2-A0EY-10A-01D-A037-01 57306d84-a02b-44c5-af64-bfc67ebd2ceb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G12_666868.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-10A TCGA-A2-A0EY-10A-01D-A046-08 8175b8e9-e7fc-4ecb-b1f6-b780aece442b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-10A TCGA-A2-A0EY-10A-01D-A047-09 777a7e2d-85a9-48fb-b31f-a70ccf0283bf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-10A TCGA-A2-A0EY-10A-01D-A19H-09 503baeb5-d5d6-46df-8695-c5e0f274c49c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-10A TCGA-A2-A0EY-10A-01W-A053-08 3779e924-6171-4990-b491-750807953785 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-10A TCGA-A2-A0EY-10A-01W-A055-09 b1d7c034-0cf5-40ce-8620-35248ca45e08 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-10A TCGA-A2-A0EY-10A-01W-A055-09 b1d7c034-0cf5-40ce-8620-35248ca45e08 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-10A TCGA-A2-A0EY-10A-01X-A052-08 ae1d64df-3c58-4113-a9b7-32a698ebc270 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0EY TCGA-A2-A0EY-10A TCGA-A2-A0EY-10A-01X-A054-09 ba6fce15-9986-406d-9203-5e82b4630056 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12D-A086-02 3e77109c-c045-4990-83ac-7a5ae360aac8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ST.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12D-A087-01 db464b40-f99f-4427-9d17-edd9af51b2c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ST.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12D-A087-01 db464b40-f99f-4427-9d17-edd9af51b2c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E01_698114.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12D-A087-01 db464b40-f99f-4427-9d17-edd9af51b2c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E01_698114.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12D-A087-01 db464b40-f99f-4427-9d17-edd9af51b2c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E01_698114.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12D-A087-01 db464b40-f99f-4427-9d17-edd9af51b2c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E01_698114.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12D-A087-01 db464b40-f99f-4427-9d17-edd9af51b2c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E01_698114.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12D-A087-01 db464b40-f99f-4427-9d17-edd9af51b2c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E01_698114.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12D-A087-01 db464b40-f99f-4427-9d17-edd9af51b2c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E01_698114.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12D-A087-01 db464b40-f99f-4427-9d17-edd9af51b2c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E01_698114.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12D-A088-05 f84a1660-9e3d-4bea-b25c-99c56ab8f0f0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ST.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12D-A099-09 dd669f44-f64d-4afc-a5ac-5f7769d1db43 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ST.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12D-A099-09 dd669f44-f64d-4afc-a5ac-5f7769d1db43 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12D-A10P-05 6977ac17-01a5-4b1c-93d7-9849780766d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ST.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12D-A10P-05 6977ac17-01a5-4b1c-93d7-9849780766d6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791006_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12D-A10P-05 6977ac17-01a5-4b1c-93d7-9849780766d6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791006_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12D-A10P-05 6977ac17-01a5-4b1c-93d7-9849780766d6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-A2-A0ST-01A-12D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12D-A10P-05 6977ac17-01a5-4b1c-93d7-9849780766d6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-A2-A0ST-01A-12D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12R-A084-07 920e47c0-1b19-46e6-b1db-b5fd95e44df0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ST.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12R-A084-07 920e47c0-1b19-46e6-b1db-b5fd95e44df0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012572_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12R-A084-07 920e47c0-1b19-46e6-b1db-b5fd95e44df0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012572_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12R-A084-07 920e47c0-1b19-46e6-b1db-b5fd95e44df0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012572_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12R-A084-07 920e47c0-1b19-46e6-b1db-b5fd95e44df0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445043.TCGA-A2-A0ST-01A-12R-A084-07.110315_UNC9-SN296_0159_AC008BABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12R-A084-07 920e47c0-1b19-46e6-b1db-b5fd95e44df0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445079.TCGA-A2-A0ST-01A-12R-A084-07.110315_UNC9-SN296_0159_AC008BABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12R-A084-07 920e47c0-1b19-46e6-b1db-b5fd95e44df0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445327.TCGA-A2-A0ST-01A-12R-A084-07.110315_UNC9-SN296_0159_AC008BABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12R-A085-13 a9432b69-d1db-4194-86d4-289d85f3198c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ST.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12R-A085-13 a9432b69-d1db-4194-86d4-289d85f3198c miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0ST-01A-12R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12R-A085-13 a9432b69-d1db-4194-86d4-289d85f3198c miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0ST-01A-12R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12W-A097-09 a50cfb3d-3954-4171-96d1-d48c61743385 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ST.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-01A TCGA-A2-A0ST-01A-12X-A098-09 6a8de7ad-54e2-4fe5-b9c9-431dc5c62a9d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ST.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-10A TCGA-A2-A0ST-10A-01D-A086-02 7ce07e6b-38c7-4c90-ae0a-7a008bcb3f33 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ST.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-10A TCGA-A2-A0ST-10A-01D-A087-01 51e276cf-b872-47cf-b1b5-5e85d0566cd1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ST.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-10A TCGA-A2-A0ST-10A-01D-A087-01 51e276cf-b872-47cf-b1b5-5e85d0566cd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C06_698154.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0ST TCGA-A2-A0ST-10A TCGA-A2-A0ST-10A-01D-A087-01 51e276cf-b872-47cf-b1b5-5e85d0566cd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C06_698154.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-10A TCGA-A2-A0ST-10A-01D-A087-01 51e276cf-b872-47cf-b1b5-5e85d0566cd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C06_698154.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-10A TCGA-A2-A0ST-10A-01D-A087-01 51e276cf-b872-47cf-b1b5-5e85d0566cd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C06_698154.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-10A TCGA-A2-A0ST-10A-01D-A087-01 51e276cf-b872-47cf-b1b5-5e85d0566cd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C06_698154.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-10A TCGA-A2-A0ST-10A-01D-A087-01 51e276cf-b872-47cf-b1b5-5e85d0566cd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C06_698154.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-10A TCGA-A2-A0ST-10A-01D-A087-01 51e276cf-b872-47cf-b1b5-5e85d0566cd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C06_698154.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-10A TCGA-A2-A0ST-10A-01D-A087-01 51e276cf-b872-47cf-b1b5-5e85d0566cd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C06_698154.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-10A TCGA-A2-A0ST-10A-01D-A099-09 c807fd87-ecb7-49c7-9427-b5dd0b84bc4b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ST.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-10A TCGA-A2-A0ST-10A-01D-A099-09 c807fd87-ecb7-49c7-9427-b5dd0b84bc4b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-10A TCGA-A2-A0ST-10A-01W-A097-09 313b37cd-97ac-4698-9631-83ae0dd424d9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ST.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0ST TCGA-A2-A0ST-10A TCGA-A2-A0ST-10A-01X-A098-09 7b90626a-cd81-4587-b3d4-ec0efe8076f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0ST.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SU TCGA-A2-A0SU-01A TCGA-A2-A0SU-01A-11D-A086-02 0729f60c-05dc-426e-b10d-1eb0e1dbaf97 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SU TCGA-A2-A0SU-01A TCGA-A2-A0SU-01A-11D-A087-01 8d301711-4802-4905-ac86-8b13a545e414 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SU TCGA-A2-A0SU-01A TCGA-A2-A0SU-01A-11D-A087-01 8d301711-4802-4905-ac86-8b13a545e414 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E05_698056.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0SU TCGA-A2-A0SU-01A TCGA-A2-A0SU-01A-11D-A087-01 8d301711-4802-4905-ac86-8b13a545e414 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E05_698056.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SU TCGA-A2-A0SU-01A TCGA-A2-A0SU-01A-11D-A087-01 8d301711-4802-4905-ac86-8b13a545e414 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E05_698056.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SU TCGA-A2-A0SU-01A TCGA-A2-A0SU-01A-11D-A087-01 8d301711-4802-4905-ac86-8b13a545e414 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E05_698056.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SU TCGA-A2-A0SU-01A TCGA-A2-A0SU-01A-11D-A087-01 8d301711-4802-4905-ac86-8b13a545e414 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E05_698056.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SU TCGA-A2-A0SU-01A TCGA-A2-A0SU-01A-11D-A087-01 8d301711-4802-4905-ac86-8b13a545e414 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E05_698056.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SU TCGA-A2-A0SU-01A TCGA-A2-A0SU-01A-11D-A087-01 8d301711-4802-4905-ac86-8b13a545e414 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E05_698056.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SU TCGA-A2-A0SU-01A TCGA-A2-A0SU-01A-11D-A087-01 8d301711-4802-4905-ac86-8b13a545e414 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E05_698056.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A2-A0SU TCGA-A2-A0SU-01A TCGA-A2-A0SU-01A-11D-A088-05 ca89c3ca-2d8b-4bf8-9399-da60099c15a9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SU TCGA-A2-A0SU-01A TCGA-A2-A0SU-01A-11D-A099-09 6ceaf20f-1458-4f7f-954a-e2f58ed163bf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SU TCGA-A2-A0SU-01A TCGA-A2-A0SU-01A-11D-A099-09 6ceaf20f-1458-4f7f-954a-e2f58ed163bf Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0SU TCGA-A2-A0SU-01A TCGA-A2-A0SU-01A-11D-A099-09 6ceaf20f-1458-4f7f-954a-e2f58ed163bf Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0SU TCGA-A2-A0SU-01A TCGA-A2-A0SU-01A-11D-A10P-05 6bfa3470-3034-4987-b2ed-967b8623ec50 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SU TCGA-A2-A0SU-01A TCGA-A2-A0SU-01A-11D-A10P-05 6bfa3470-3034-4987-b2ed-967b8623ec50 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791020_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A2-A0SU TCGA-A2-A0SU-01A TCGA-A2-A0SU-01A-11D-A10P-05 6bfa3470-3034-4987-b2ed-967b8623ec50 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791020_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A2-A0SU TCGA-A2-A0SU-01A TCGA-A2-A0SU-01A-11D-A10P-05 6bfa3470-3034-4987-b2ed-967b8623ec50 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-A2-A0SU-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-A2-A0SU TCGA-A2-A0SU-01A TCGA-A2-A0SU-01A-11D-A10P-05 6bfa3470-3034-4987-b2ed-967b8623ec50 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-A2-A0SU-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-A2-A0SU TCGA-A2-A0SU-01A TCGA-A2-A0SU-01A-11R-A084-07 05aa0960-505b-4b04-be9f-7b54940f5b27 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SU TCGA-A2-A0SU-01A TCGA-A2-A0SU-01A-11R-A084-07 05aa0960-505b-4b04-be9f-7b54940f5b27 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012603_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-A2-A0SU TCGA-A2-A0SU-01A TCGA-A2-A0SU-01A-11R-A084-07 05aa0960-505b-4b04-be9f-7b54940f5b27 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012603_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-A2-A0SU TCGA-A2-A0SU-01A TCGA-A2-A0SU-01A-11R-A084-07 05aa0960-505b-4b04-be9f-7b54940f5b27 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012603_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-A2-A0SU TCGA-A2-A0SU-01A TCGA-A2-A0SU-01A-11R-A084-07 05aa0960-505b-4b04-be9f-7b54940f5b27 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443900.TCGA-A2-A0SU-01A-11R-A084-07.110315_UNC9-SN296_0159_AC008BABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0SU TCGA-A2-A0SU-01A TCGA-A2-A0SU-01A-11R-A084-07 05aa0960-505b-4b04-be9f-7b54940f5b27 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443908.TCGA-A2-A0SU-01A-11R-A084-07.110315_UNC9-SN296_0159_AC008BABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0SU TCGA-A2-A0SU-01A TCGA-A2-A0SU-01A-11R-A084-07 05aa0960-505b-4b04-be9f-7b54940f5b27 RNASeq IlluminaHiSeq_RNASeq 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SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E08_697982.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SU TCGA-A2-A0SU-10A TCGA-A2-A0SU-10A-01D-A087-01 eec9e0fe-270c-4fa7-a081-2cafa7938f43 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E08_697982.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SU TCGA-A2-A0SU-10A TCGA-A2-A0SU-10A-01D-A087-01 eec9e0fe-270c-4fa7-a081-2cafa7938f43 SNP Genome_Wide_SNP_6 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1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SV TCGA-A2-A0SV-01A TCGA-A2-A0SV-01A-11D-A087-01 438bf0f6-af07-42dd-8121-fce6c1163e97 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SV TCGA-A2-A0SV-01A TCGA-A2-A0SV-01A-11D-A087-01 438bf0f6-af07-42dd-8121-fce6c1163e97 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A12_698048.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0SV TCGA-A2-A0SV-01A TCGA-A2-A0SV-01A-11D-A087-01 438bf0f6-af07-42dd-8121-fce6c1163e97 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A12_698048.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SV TCGA-A2-A0SV-01A TCGA-A2-A0SV-01A-11D-A087-01 438bf0f6-af07-42dd-8121-fce6c1163e97 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A12_698048.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SV TCGA-A2-A0SV-01A TCGA-A2-A0SV-01A-11D-A087-01 438bf0f6-af07-42dd-8121-fce6c1163e97 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A12_698048.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SV TCGA-A2-A0SV-01A TCGA-A2-A0SV-01A-11D-A087-01 438bf0f6-af07-42dd-8121-fce6c1163e97 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A12_698048.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SV TCGA-A2-A0SV-01A TCGA-A2-A0SV-01A-11D-A087-01 438bf0f6-af07-42dd-8121-fce6c1163e97 SNP Genome_Wide_SNP_6 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TCGA-A2-A0SV TCGA-A2-A0SV-01A TCGA-A2-A0SV-01A-11R-A084-07 783d861d-ba0c-4b0d-9922-06ac23d3fc85 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SV TCGA-A2-A0SV-01A TCGA-A2-A0SV-01A-11R-A084-07 783d861d-ba0c-4b0d-9922-06ac23d3fc85 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012616_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-A2-A0SV TCGA-A2-A0SV-01A TCGA-A2-A0SV-01A-11R-A084-07 783d861d-ba0c-4b0d-9922-06ac23d3fc85 Expression-Genes AgilentG4502A_07_3 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476987.TCGA-A2-A0SV-01A-11R-A084-07.110406_UNC13-SN749_0049_AC008AABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0SV TCGA-A2-A0SV-01A TCGA-A2-A0SV-01A-11R-A084-07 783d861d-ba0c-4b0d-9922-06ac23d3fc85 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476994.TCGA-A2-A0SV-01A-11R-A084-07.110406_UNC13-SN749_0049_AC008AABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0SV TCGA-A2-A0SV-01A TCGA-A2-A0SV-01A-11R-A084-07 783d861d-ba0c-4b0d-9922-06ac23d3fc85 RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0SV-01A-11R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0SV TCGA-A2-A0SV-01A TCGA-A2-A0SV-01A-11R-A085-13 5d43e80c-2076-471d-b0ee-1256d5511a9f miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0SV-01A-11R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0SV TCGA-A2-A0SV-01A TCGA-A2-A0SV-01A-11W-A097-09 b5fdcc86-f663-465f-aac9-e60f7de50651 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SV TCGA-A2-A0SV-01A TCGA-A2-A0SV-01A-11X-A098-09 0743cf45-bb0d-4a30-a08f-9093dad7ef82 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SV TCGA-A2-A0SV-10A TCGA-A2-A0SV-10A-01D-A086-02 a2ff70ff-5bae-4a27-8950-bd7709cf817b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SV TCGA-A2-A0SV-10A TCGA-A2-A0SV-10A-01D-A087-01 05159aa0-6ea9-4a2d-b148-13678db6f28c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SV TCGA-A2-A0SV-10A TCGA-A2-A0SV-10A-01D-A087-01 05159aa0-6ea9-4a2d-b148-13678db6f28c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C12_698098.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0SV TCGA-A2-A0SV-10A TCGA-A2-A0SV-10A-01D-A087-01 05159aa0-6ea9-4a2d-b148-13678db6f28c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C12_698098.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SV TCGA-A2-A0SV-10A TCGA-A2-A0SV-10A-01D-A087-01 05159aa0-6ea9-4a2d-b148-13678db6f28c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C12_698098.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SV TCGA-A2-A0SV-10A TCGA-A2-A0SV-10A-01D-A087-01 05159aa0-6ea9-4a2d-b148-13678db6f28c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C12_698098.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SV TCGA-A2-A0SV-10A TCGA-A2-A0SV-10A-01D-A087-01 05159aa0-6ea9-4a2d-b148-13678db6f28c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C12_698098.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SV TCGA-A2-A0SV-10A TCGA-A2-A0SV-10A-01D-A087-01 05159aa0-6ea9-4a2d-b148-13678db6f28c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C12_698098.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SV TCGA-A2-A0SV-10A TCGA-A2-A0SV-10A-01D-A087-01 05159aa0-6ea9-4a2d-b148-13678db6f28c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C12_698098.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SV TCGA-A2-A0SV-10A TCGA-A2-A0SV-10A-01D-A087-01 05159aa0-6ea9-4a2d-b148-13678db6f28c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C12_698098.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A2-A0SV TCGA-A2-A0SV-10A TCGA-A2-A0SV-10A-01D-A099-09 533628c0-a870-475f-bd1d-8bf7e0f02153 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SV TCGA-A2-A0SV-10A TCGA-A2-A0SV-10A-01W-A097-09 db8da47e-0daa-4ebc-81fa-756dacf71ca7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SV TCGA-A2-A0SV-10A TCGA-A2-A0SV-10A-01W-A097-09 db8da47e-0daa-4ebc-81fa-756dacf71ca7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0SV TCGA-A2-A0SV-10A TCGA-A2-A0SV-10A-01X-A098-09 f40eed58-4fea-40b9-b8a2-2d0fca694dbc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11D-A086-02 312be6c1-f220-423b-bea6-247153ed2775 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11D-A087-01 e06babf2-ca3c-4bde-9c36-9799e305c520 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11D-A087-01 e06babf2-ca3c-4bde-9c36-9799e305c520 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B03_698024.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11D-A087-01 e06babf2-ca3c-4bde-9c36-9799e305c520 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B03_698024.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11D-A087-01 e06babf2-ca3c-4bde-9c36-9799e305c520 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B03_698024.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11D-A087-01 e06babf2-ca3c-4bde-9c36-9799e305c520 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B03_698024.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11D-A087-01 e06babf2-ca3c-4bde-9c36-9799e305c520 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B03_698024.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11D-A087-01 e06babf2-ca3c-4bde-9c36-9799e305c520 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B03_698024.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11D-A087-01 e06babf2-ca3c-4bde-9c36-9799e305c520 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B03_698024.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11D-A087-01 e06babf2-ca3c-4bde-9c36-9799e305c520 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B03_698024.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11D-A088-05 2138dbdb-ee1c-40c8-9dba-7356b237fa84 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11D-A099-09 7fbd2807-a5bb-4030-a299-524ec3ab4543 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11D-A099-09 7fbd2807-a5bb-4030-a299-524ec3ab4543 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11D-A10P-05 c718b0c0-a121-4d1b-8f4e-e67f03a4ef2f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11D-A10P-05 c718b0c0-a121-4d1b-8f4e-e67f03a4ef2f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791010_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11D-A10P-05 c718b0c0-a121-4d1b-8f4e-e67f03a4ef2f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791010_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11D-A10P-05 c718b0c0-a121-4d1b-8f4e-e67f03a4ef2f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-A2-A0SW-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11D-A10P-05 c718b0c0-a121-4d1b-8f4e-e67f03a4ef2f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-A2-A0SW-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11R-A084-07 d17676ea-d64e-49d0-9737-3b852879ce52 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11R-A084-07 d17676ea-d64e-49d0-9737-3b852879ce52 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012621_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11R-A084-07 d17676ea-d64e-49d0-9737-3b852879ce52 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012621_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11R-A084-07 d17676ea-d64e-49d0-9737-3b852879ce52 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012621_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11R-A084-07 d17676ea-d64e-49d0-9737-3b852879ce52 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477019.TCGA-A2-A0SW-01A-11R-A084-07.110406_UNC13-SN749_0049_AC008AABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11R-A084-07 d17676ea-d64e-49d0-9737-3b852879ce52 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477021.TCGA-A2-A0SW-01A-11R-A084-07.110406_UNC13-SN749_0049_AC008AABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11R-A084-07 d17676ea-d64e-49d0-9737-3b852879ce52 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477245.TCGA-A2-A0SW-01A-11R-A084-07.110406_UNC13-SN749_0049_AC008AABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11R-A085-13 361c5559-2ee6-43ea-b132-2cc68dc5ef9a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11R-A085-13 361c5559-2ee6-43ea-b132-2cc68dc5ef9a miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0SW-01A-11R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11R-A085-13 361c5559-2ee6-43ea-b132-2cc68dc5ef9a miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0SW-01A-11R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11W-A097-09 e9d08044-320d-47c5-9541-f19d0eb363da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-01A TCGA-A2-A0SW-01A-11X-A098-09 9b5eaa86-87b3-4c8d-9a6c-8bbcbd14b849 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-10A TCGA-A2-A0SW-10A-01D-A086-02 a09b2e7e-d35a-451a-8ac4-d0e860cb4dc8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-10A TCGA-A2-A0SW-10A-01D-A087-01 811b6a64-40f6-46c6-8ff5-8352ec8e550a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-10A TCGA-A2-A0SW-10A-01D-A087-01 811b6a64-40f6-46c6-8ff5-8352ec8e550a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B05_698158.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0SW TCGA-A2-A0SW-10A TCGA-A2-A0SW-10A-01D-A087-01 811b6a64-40f6-46c6-8ff5-8352ec8e550a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B05_698158.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-10A TCGA-A2-A0SW-10A-01D-A087-01 811b6a64-40f6-46c6-8ff5-8352ec8e550a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B05_698158.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-10A TCGA-A2-A0SW-10A-01D-A087-01 811b6a64-40f6-46c6-8ff5-8352ec8e550a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B05_698158.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-10A TCGA-A2-A0SW-10A-01D-A087-01 811b6a64-40f6-46c6-8ff5-8352ec8e550a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B05_698158.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-10A TCGA-A2-A0SW-10A-01D-A087-01 811b6a64-40f6-46c6-8ff5-8352ec8e550a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B05_698158.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-10A TCGA-A2-A0SW-10A-01D-A087-01 811b6a64-40f6-46c6-8ff5-8352ec8e550a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B05_698158.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-10A TCGA-A2-A0SW-10A-01D-A087-01 811b6a64-40f6-46c6-8ff5-8352ec8e550a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B05_698158.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-10A TCGA-A2-A0SW-10A-01D-A099-09 57eb9f9a-463a-4a87-bd98-2f6cfa77fdd0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-10A TCGA-A2-A0SW-10A-01W-A097-09 1dfaec53-f1d6-46ff-82af-a90cb3cf69ae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-10A TCGA-A2-A0SW-10A-01W-A097-09 1dfaec53-f1d6-46ff-82af-a90cb3cf69ae Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0SW TCGA-A2-A0SW-10A TCGA-A2-A0SW-10A-01X-A098-09 e6545298-689a-4c4a-b098-07045ed918e1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-01A TCGA-A2-A0SX-01A-12D-A086-02 b2484b35-bd5c-4e03-90a4-9e9bb915255d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-01A TCGA-A2-A0SX-01A-12D-A087-01 aa2d584e-9a6b-418e-a401-c8a17d669cb8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-01A TCGA-A2-A0SX-01A-12D-A087-01 aa2d584e-9a6b-418e-a401-c8a17d669cb8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B07_698090.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0SX TCGA-A2-A0SX-01A TCGA-A2-A0SX-01A-12D-A087-01 aa2d584e-9a6b-418e-a401-c8a17d669cb8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B07_698090.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-01A TCGA-A2-A0SX-01A-12D-A087-01 aa2d584e-9a6b-418e-a401-c8a17d669cb8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B07_698090.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-01A TCGA-A2-A0SX-01A-12D-A087-01 aa2d584e-9a6b-418e-a401-c8a17d669cb8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B07_698090.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-01A TCGA-A2-A0SX-01A-12D-A087-01 aa2d584e-9a6b-418e-a401-c8a17d669cb8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B07_698090.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-01A TCGA-A2-A0SX-01A-12D-A087-01 aa2d584e-9a6b-418e-a401-c8a17d669cb8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B07_698090.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-01A TCGA-A2-A0SX-01A-12D-A087-01 aa2d584e-9a6b-418e-a401-c8a17d669cb8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B07_698090.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-01A TCGA-A2-A0SX-01A-12D-A087-01 aa2d584e-9a6b-418e-a401-c8a17d669cb8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B07_698090.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-01A TCGA-A2-A0SX-01A-12D-A088-05 833836be-3ee1-40c8-b65b-bf8b709e6e25 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-01A TCGA-A2-A0SX-01A-12D-A099-09 b54bc31e-bdcc-4ad5-998e-5a9c542f83bb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-01A TCGA-A2-A0SX-01A-12D-A099-09 b54bc31e-bdcc-4ad5-998e-5a9c542f83bb Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-01A TCGA-A2-A0SX-01A-12D-A099-09 b54bc31e-bdcc-4ad5-998e-5a9c542f83bb Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-01A TCGA-A2-A0SX-01A-12D-A10P-05 45647c0a-3227-4b46-a4c3-6d090f114336 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-01A TCGA-A2-A0SX-01A-12D-A10P-05 45647c0a-3227-4b46-a4c3-6d090f114336 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791006_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-01A TCGA-A2-A0SX-01A-12D-A10P-05 45647c0a-3227-4b46-a4c3-6d090f114336 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791006_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-01A TCGA-A2-A0SX-01A-12D-A10P-05 45647c0a-3227-4b46-a4c3-6d090f114336 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-A2-A0SX-01A-12D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-01A TCGA-A2-A0SX-01A-12D-A10P-05 45647c0a-3227-4b46-a4c3-6d090f114336 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-A2-A0SX-01A-12D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-01A TCGA-A2-A0SX-01A-12R-A084-07 28f9b0d6-8b8f-4dd6-8a7d-73cdd374a825 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-01A TCGA-A2-A0SX-01A-12R-A084-07 28f9b0d6-8b8f-4dd6-8a7d-73cdd374a825 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012626_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-A2-A0SX TCGA-A2-A0SX-01A TCGA-A2-A0SX-01A-12R-A084-07 28f9b0d6-8b8f-4dd6-8a7d-73cdd374a825 Expression-Genes AgilentG4502A_07_3 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443883.TCGA-A2-A0SX-01A-12R-A084-07.110325_UNC13-SN749_0048_BB02DUABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-01A TCGA-A2-A0SX-01A-12R-A085-13 bfbed9bf-2577-49b3-a6bf-f004d819b2f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-01A TCGA-A2-A0SX-01A-12R-A085-13 bfbed9bf-2577-49b3-a6bf-f004d819b2f9 miRNASeq IlluminaGA_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-01A TCGA-A2-A0SX-01A-12X-A098-09 a4c04161-bb72-45b9-a383-4e10048d5ce1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-10A TCGA-A2-A0SX-10A-01D-A086-02 08cbd72f-84d8-4e2b-96e6-98eafdc2230c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-10A TCGA-A2-A0SX-10A-01D-A087-01 a6c0c588-2e05-4e83-a010-a6247e217211 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-10A TCGA-A2-A0SX-10A-01D-A087-01 a6c0c588-2e05-4e83-a010-a6247e217211 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B10_698010.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0SX TCGA-A2-A0SX-10A TCGA-A2-A0SX-10A-01D-A087-01 a6c0c588-2e05-4e83-a010-a6247e217211 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B10_698010.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-10A TCGA-A2-A0SX-10A-01D-A087-01 a6c0c588-2e05-4e83-a010-a6247e217211 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B10_698010.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-10A TCGA-A2-A0SX-10A-01D-A087-01 a6c0c588-2e05-4e83-a010-a6247e217211 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B10_698010.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-10A TCGA-A2-A0SX-10A-01D-A087-01 a6c0c588-2e05-4e83-a010-a6247e217211 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B10_698010.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-10A TCGA-A2-A0SX-10A-01D-A087-01 a6c0c588-2e05-4e83-a010-a6247e217211 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B10_698010.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-10A TCGA-A2-A0SX-10A-01D-A099-09 ee7f21d0-efa1-4d19-9b82-03e1a90432b4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-10A TCGA-A2-A0SX-10A-01D-A099-09 ee7f21d0-efa1-4d19-9b82-03e1a90432b4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-10A TCGA-A2-A0SX-10A-01D-A099-09 ee7f21d0-efa1-4d19-9b82-03e1a90432b4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-10A TCGA-A2-A0SX-10A-01W-A097-09 16b92fa5-f851-485e-8e5b-540c62ac6431 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SX TCGA-A2-A0SX-10A TCGA-A2-A0SX-10A-01X-A098-09 a609897f-e249-4798-a263-b16e633250fa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31D-A086-02 06685843-3f49-4cc6-a081-b596ede0788f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31D-A087-01 b322940e-f03c-46f9-9dd4-f027089d5b40 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31D-A087-01 b322940e-f03c-46f9-9dd4-f027089d5b40 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D08_698068.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31D-A087-01 b322940e-f03c-46f9-9dd4-f027089d5b40 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D08_698068.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31D-A087-01 b322940e-f03c-46f9-9dd4-f027089d5b40 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D08_698068.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31D-A087-01 b322940e-f03c-46f9-9dd4-f027089d5b40 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D08_698068.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31D-A087-01 b322940e-f03c-46f9-9dd4-f027089d5b40 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D08_698068.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31D-A087-01 b322940e-f03c-46f9-9dd4-f027089d5b40 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D08_698068.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31D-A087-01 b322940e-f03c-46f9-9dd4-f027089d5b40 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D08_698068.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31D-A087-01 b322940e-f03c-46f9-9dd4-f027089d5b40 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D08_698068.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31D-A088-05 c79da707-4426-4114-9294-d44b35060625 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31D-A099-09 efaa9c0b-c14b-4141-b48c-cc2c6b89ab73 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31D-A099-09 efaa9c0b-c14b-4141-b48c-cc2c6b89ab73 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31D-A10P-05 690fdb80-25c6-48a1-9ff8-251b89352bc7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31D-A10P-05 690fdb80-25c6-48a1-9ff8-251b89352bc7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791004_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31D-A10P-05 690fdb80-25c6-48a1-9ff8-251b89352bc7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791004_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31D-A10P-05 690fdb80-25c6-48a1-9ff8-251b89352bc7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-A2-A0SY-01A-31D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31D-A10P-05 690fdb80-25c6-48a1-9ff8-251b89352bc7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-A2-A0SY-01A-31D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31R-A084-07 30fad3cd-09a5-4867-9d18-a940041a2b60 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31R-A084-07 30fad3cd-09a5-4867-9d18-a940041a2b60 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012632_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31R-A084-07 30fad3cd-09a5-4867-9d18-a940041a2b60 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012632_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31R-A084-07 30fad3cd-09a5-4867-9d18-a940041a2b60 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012632_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31R-A084-07 30fad3cd-09a5-4867-9d18-a940041a2b60 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442797.TCGA-A2-A0SY-01A-31R-A084-07.110325_UNC13-SN749_0048_BB02DUABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31R-A084-07 30fad3cd-09a5-4867-9d18-a940041a2b60 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442802.TCGA-A2-A0SY-01A-31R-A084-07.110325_UNC13-SN749_0048_BB02DUABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31R-A084-07 30fad3cd-09a5-4867-9d18-a940041a2b60 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443238.TCGA-A2-A0SY-01A-31R-A084-07.110325_UNC13-SN749_0048_BB02DUABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31R-A085-13 045e9288-d8ec-4acb-81a5-e7a0eec23ba7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31R-A085-13 045e9288-d8ec-4acb-81a5-e7a0eec23ba7 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0SY-01A-31R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31R-A085-13 045e9288-d8ec-4acb-81a5-e7a0eec23ba7 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0SY-01A-31R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31W-A097-09 9fdb53f4-1a0a-4153-a054-46b4c55c8a27 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-01A TCGA-A2-A0SY-01A-31X-A098-09 0ca2d80f-3bd0-4b9c-838a-c3aa839ba91a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-10A TCGA-A2-A0SY-10A-01D-A086-02 1f7e8397-65a3-4452-a829-8e9405ecab29 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-10A TCGA-A2-A0SY-10A-01D-A087-01 6382fd27-7576-4b8c-ab43-cde8365ab2ad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-10A TCGA-A2-A0SY-10A-01D-A087-01 6382fd27-7576-4b8c-ab43-cde8365ab2ad SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H04_698130.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0SY TCGA-A2-A0SY-10A TCGA-A2-A0SY-10A-01D-A087-01 6382fd27-7576-4b8c-ab43-cde8365ab2ad SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H04_698130.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-10A TCGA-A2-A0SY-10A-01D-A087-01 6382fd27-7576-4b8c-ab43-cde8365ab2ad SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H04_698130.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-10A TCGA-A2-A0SY-10A-01D-A087-01 6382fd27-7576-4b8c-ab43-cde8365ab2ad SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H04_698130.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-10A TCGA-A2-A0SY-10A-01D-A087-01 6382fd27-7576-4b8c-ab43-cde8365ab2ad SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H04_698130.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-10A TCGA-A2-A0SY-10A-01D-A087-01 6382fd27-7576-4b8c-ab43-cde8365ab2ad SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H04_698130.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-10A TCGA-A2-A0SY-10A-01D-A087-01 6382fd27-7576-4b8c-ab43-cde8365ab2ad SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H04_698130.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-10A TCGA-A2-A0SY-10A-01D-A087-01 6382fd27-7576-4b8c-ab43-cde8365ab2ad SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H04_698130.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-10A TCGA-A2-A0SY-10A-01D-A099-09 95699bf2-296b-4b90-8328-3e423c69e282 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-10A TCGA-A2-A0SY-10A-01D-A099-09 95699bf2-296b-4b90-8328-3e423c69e282 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-10A TCGA-A2-A0SY-10A-01W-A097-09 a9118959-fe80-4ef5-aec9-dcc12104d254 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0SY TCGA-A2-A0SY-10A TCGA-A2-A0SY-10A-01X-A098-09 f50fe42f-8506-485b-9205-797907a8c311 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0SY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22D-A086-02 945d14f1-2832-4058-bebe-002c556d7306 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22D-A087-01 07d13cdb-332c-4bd8-82f6-8655881cea74 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22D-A087-01 07d13cdb-332c-4bd8-82f6-8655881cea74 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D11_698062.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22D-A087-01 07d13cdb-332c-4bd8-82f6-8655881cea74 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D11_698062.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22D-A087-01 07d13cdb-332c-4bd8-82f6-8655881cea74 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D11_698062.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22D-A087-01 07d13cdb-332c-4bd8-82f6-8655881cea74 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D11_698062.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22D-A087-01 07d13cdb-332c-4bd8-82f6-8655881cea74 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D11_698062.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22D-A087-01 07d13cdb-332c-4bd8-82f6-8655881cea74 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D11_698062.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22D-A087-01 07d13cdb-332c-4bd8-82f6-8655881cea74 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D11_698062.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22D-A087-01 07d13cdb-332c-4bd8-82f6-8655881cea74 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D11_698062.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22D-A088-05 734b7e9e-37f1-48aa-ab49-980ea325dad3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22D-A099-09 3c107ce4-a6ac-469b-b1c0-cd86674b5766 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22D-A099-09 3c107ce4-a6ac-469b-b1c0-cd86674b5766 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22D-A099-09 3c107ce4-a6ac-469b-b1c0-cd86674b5766 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22D-A10P-05 f98432d4-5bee-4e42-a19b-42d5907a1885 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22D-A10P-05 f98432d4-5bee-4e42-a19b-42d5907a1885 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791020_R05C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22D-A10P-05 f98432d4-5bee-4e42-a19b-42d5907a1885 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791020_R05C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22D-A10P-05 f98432d4-5bee-4e42-a19b-42d5907a1885 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-A2-A0T0-01A-22D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22D-A10P-05 f98432d4-5bee-4e42-a19b-42d5907a1885 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-A2-A0T0-01A-22D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22R-A084-07 7e073ecd-452a-4cba-9dfd-8601f3245721 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22R-A084-07 7e073ecd-452a-4cba-9dfd-8601f3245721 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012587_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22R-A084-07 7e073ecd-452a-4cba-9dfd-8601f3245721 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012587_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22R-A084-07 7e073ecd-452a-4cba-9dfd-8601f3245721 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012587_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22R-A084-07 7e073ecd-452a-4cba-9dfd-8601f3245721 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477714.TCGA-A2-A0T0-01A-22R-A084-07.110325_UNC13-SN749_0047_AB02CWABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22R-A084-07 7e073ecd-452a-4cba-9dfd-8601f3245721 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477750.TCGA-A2-A0T0-01A-22R-A084-07.110325_UNC13-SN749_0047_AB02CWABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22R-A084-07 7e073ecd-452a-4cba-9dfd-8601f3245721 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477883.TCGA-A2-A0T0-01A-22R-A084-07.110325_UNC13-SN749_0047_AB02CWABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22R-A085-13 720c8ec4-1b46-4337-a3e4-207995780adf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22R-A085-13 720c8ec4-1b46-4337-a3e4-207995780adf miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0T0-01A-22R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22R-A085-13 720c8ec4-1b46-4337-a3e4-207995780adf miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0T0-01A-22R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22W-A097-09 723aa26c-8429-4f77-aada-382713c12440 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-01A TCGA-A2-A0T0-01A-22X-A098-09 6bc6743b-a671-4920-9261-bde59de4b8c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-10A TCGA-A2-A0T0-10A-01D-A086-02 3a7c2150-95f8-4bbb-b58f-efa0785b080b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-10A TCGA-A2-A0T0-10A-01D-A087-01 bed4c6b2-012b-41ea-a862-e270c81c2374 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-10A TCGA-A2-A0T0-10A-01D-A087-01 bed4c6b2-012b-41ea-a862-e270c81c2374 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F11_698086.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0T0 TCGA-A2-A0T0-10A TCGA-A2-A0T0-10A-01D-A087-01 bed4c6b2-012b-41ea-a862-e270c81c2374 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F11_698086.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-10A TCGA-A2-A0T0-10A-01D-A087-01 bed4c6b2-012b-41ea-a862-e270c81c2374 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F11_698086.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-10A TCGA-A2-A0T0-10A-01D-A087-01 bed4c6b2-012b-41ea-a862-e270c81c2374 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F11_698086.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-10A TCGA-A2-A0T0-10A-01D-A087-01 bed4c6b2-012b-41ea-a862-e270c81c2374 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F11_698086.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-10A TCGA-A2-A0T0-10A-01D-A087-01 bed4c6b2-012b-41ea-a862-e270c81c2374 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F11_698086.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-10A TCGA-A2-A0T0-10A-01D-A087-01 bed4c6b2-012b-41ea-a862-e270c81c2374 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F11_698086.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-10A TCGA-A2-A0T0-10A-01D-A087-01 bed4c6b2-012b-41ea-a862-e270c81c2374 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F11_698086.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-10A TCGA-A2-A0T0-10A-01D-A099-09 94629e5b-195d-495b-bfa5-e10c46930a47 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-10A TCGA-A2-A0T0-10A-01D-A099-09 94629e5b-195d-495b-bfa5-e10c46930a47 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-10A TCGA-A2-A0T0-10A-01D-A099-09 94629e5b-195d-495b-bfa5-e10c46930a47 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-10A TCGA-A2-A0T0-10A-01W-A097-09 c208a39b-cd8f-4b44-a7fe-de285739e607 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T0 TCGA-A2-A0T0-10A TCGA-A2-A0T0-10A-01X-A098-09 4934bf64-05cd-4f95-8228-0850ed3468ad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21D-A086-02 8122adcb-9ab2-45e2-8298-4ba48debee04 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21D-A087-01 e8889068-b216-4662-816f-b8e712b61ec7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21D-A087-01 e8889068-b216-4662-816f-b8e712b61ec7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E02_698060.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21D-A087-01 e8889068-b216-4662-816f-b8e712b61ec7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E02_698060.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21D-A087-01 e8889068-b216-4662-816f-b8e712b61ec7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E02_698060.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21D-A087-01 e8889068-b216-4662-816f-b8e712b61ec7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E02_698060.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21D-A087-01 e8889068-b216-4662-816f-b8e712b61ec7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E02_698060.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21D-A087-01 e8889068-b216-4662-816f-b8e712b61ec7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E02_698060.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21D-A087-01 e8889068-b216-4662-816f-b8e712b61ec7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E02_698060.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21D-A087-01 e8889068-b216-4662-816f-b8e712b61ec7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E02_698060.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21D-A088-05 cd8de670-ea5c-4163-9df3-15df07178275 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21D-A099-09 9515373a-d982-45fa-b8f9-363f9ba8649f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21D-A099-09 9515373a-d982-45fa-b8f9-363f9ba8649f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21D-A099-09 9515373a-d982-45fa-b8f9-363f9ba8649f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21D-A10P-05 74278f22-b588-4cbb-b8fb-85dafcad2e9e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21D-A10P-05 74278f22-b588-4cbb-b8fb-85dafcad2e9e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791020_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21D-A10P-05 74278f22-b588-4cbb-b8fb-85dafcad2e9e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791020_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21D-A10P-05 74278f22-b588-4cbb-b8fb-85dafcad2e9e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-A2-A0T1-01A-21D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21D-A10P-05 74278f22-b588-4cbb-b8fb-85dafcad2e9e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-A2-A0T1-01A-21D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21R-A084-07 8a19b992-4173-400d-8aec-d156525eedd6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21R-A084-07 8a19b992-4173-400d-8aec-d156525eedd6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012593_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21R-A084-07 8a19b992-4173-400d-8aec-d156525eedd6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012593_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21R-A084-07 8a19b992-4173-400d-8aec-d156525eedd6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012593_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21R-A084-07 8a19b992-4173-400d-8aec-d156525eedd6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477693.TCGA-A2-A0T1-01A-21R-A084-07.110325_UNC13-SN749_0047_AB02CWABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21R-A084-07 8a19b992-4173-400d-8aec-d156525eedd6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477712.TCGA-A2-A0T1-01A-21R-A084-07.110325_UNC13-SN749_0047_AB02CWABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21R-A084-07 8a19b992-4173-400d-8aec-d156525eedd6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477934.TCGA-A2-A0T1-01A-21R-A084-07.110325_UNC13-SN749_0047_AB02CWABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21R-A085-13 0fe5985e-7642-481e-a0c0-48a4445b9d66 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21R-A085-13 0fe5985e-7642-481e-a0c0-48a4445b9d66 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0T1-01A-21R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21R-A085-13 0fe5985e-7642-481e-a0c0-48a4445b9d66 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0T1-01A-21R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21W-A097-09 2ac5f41a-6de9-424b-a8e6-b8bc164a3b31 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-01A TCGA-A2-A0T1-01A-21X-A098-09 ae009013-56d3-4fe1-acab-6db058b73cc3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-10A TCGA-A2-A0T1-10A-01D-A086-02 2613d2d8-193c-4ed4-999f-5afed5a29298 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-10A TCGA-A2-A0T1-10A-01D-A087-01 f2e86df3-5e9e-4cfd-b463-2f06938b8a22 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-10A TCGA-A2-A0T1-10A-01D-A087-01 f2e86df3-5e9e-4cfd-b463-2f06938b8a22 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G02_698092.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0T1 TCGA-A2-A0T1-10A TCGA-A2-A0T1-10A-01D-A087-01 f2e86df3-5e9e-4cfd-b463-2f06938b8a22 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G02_698092.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-10A TCGA-A2-A0T1-10A-01D-A087-01 f2e86df3-5e9e-4cfd-b463-2f06938b8a22 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G02_698092.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-10A TCGA-A2-A0T1-10A-01D-A087-01 f2e86df3-5e9e-4cfd-b463-2f06938b8a22 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G02_698092.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-10A TCGA-A2-A0T1-10A-01D-A087-01 f2e86df3-5e9e-4cfd-b463-2f06938b8a22 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G02_698092.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-10A TCGA-A2-A0T1-10A-01D-A087-01 f2e86df3-5e9e-4cfd-b463-2f06938b8a22 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G02_698092.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-10A TCGA-A2-A0T1-10A-01D-A087-01 f2e86df3-5e9e-4cfd-b463-2f06938b8a22 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G02_698092.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-10A TCGA-A2-A0T1-10A-01D-A087-01 f2e86df3-5e9e-4cfd-b463-2f06938b8a22 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G02_698092.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-10A TCGA-A2-A0T1-10A-01D-A099-09 878b308b-e9d9-48ed-8654-86971ef43f22 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-10A TCGA-A2-A0T1-10A-01D-A099-09 878b308b-e9d9-48ed-8654-86971ef43f22 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-10A TCGA-A2-A0T1-10A-01D-A099-09 878b308b-e9d9-48ed-8654-86971ef43f22 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-10A TCGA-A2-A0T1-10A-01W-A097-09 612c6825-92fb-474b-91ae-a7dcdb4350df Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T1 TCGA-A2-A0T1-10A TCGA-A2-A0T1-10A-01X-A098-09 4bfab7f7-3a98-4917-90c7-6448ca689ec4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11D-A086-02 9517240d-e0d5-47ee-a655-7315bd0b83ca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11D-A087-01 eaf1eb18-1568-459d-be40-71e5e92df673 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11D-A087-01 eaf1eb18-1568-459d-be40-71e5e92df673 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C07_698036.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11D-A087-01 eaf1eb18-1568-459d-be40-71e5e92df673 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C07_698036.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11D-A087-01 eaf1eb18-1568-459d-be40-71e5e92df673 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C07_698036.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11D-A087-01 eaf1eb18-1568-459d-be40-71e5e92df673 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C07_698036.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11D-A087-01 eaf1eb18-1568-459d-be40-71e5e92df673 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C07_698036.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11D-A087-01 eaf1eb18-1568-459d-be40-71e5e92df673 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C07_698036.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11D-A087-01 eaf1eb18-1568-459d-be40-71e5e92df673 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C07_698036.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11D-A087-01 eaf1eb18-1568-459d-be40-71e5e92df673 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C07_698036.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11D-A088-05 952831ef-d68e-4007-b96c-1ff612623bfe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11D-A099-09 147489f2-c34b-4ee1-a9ab-cb8469278af9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11D-A10P-05 6f1aeadb-fd0a-4ea0-89a6-cc6222d789f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11D-A10P-05 6f1aeadb-fd0a-4ea0-89a6-cc6222d789f8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791004_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11D-A10P-05 6f1aeadb-fd0a-4ea0-89a6-cc6222d789f8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791004_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11D-A10P-05 6f1aeadb-fd0a-4ea0-89a6-cc6222d789f8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-A2-A0T2-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11D-A10P-05 6f1aeadb-fd0a-4ea0-89a6-cc6222d789f8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-A2-A0T2-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11R-A084-07 491c6c41-d1c5-4be7-bb7c-9df7275aa388 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11R-A084-07 491c6c41-d1c5-4be7-bb7c-9df7275aa388 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012855_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11R-A084-07 491c6c41-d1c5-4be7-bb7c-9df7275aa388 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012855_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11R-A084-07 491c6c41-d1c5-4be7-bb7c-9df7275aa388 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012855_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11R-A084-07 491c6c41-d1c5-4be7-bb7c-9df7275aa388 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443765.TCGA-A2-A0T2-01A-11R-A084-07.110315_UNC9-SN296_0160_BB05L8ABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11R-A084-07 491c6c41-d1c5-4be7-bb7c-9df7275aa388 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_444099.TCGA-A2-A0T2-01A-11R-A084-07.110315_UNC9-SN296_0160_BB05L8ABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11R-A084-07 491c6c41-d1c5-4be7-bb7c-9df7275aa388 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_444176.TCGA-A2-A0T2-01A-11R-A084-07.110315_UNC9-SN296_0160_BB05L8ABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11R-A085-13 3f27e873-4e3c-402f-9435-f87ec9f0203d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11R-A085-13 3f27e873-4e3c-402f-9435-f87ec9f0203d miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0T2-01A-11R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11R-A085-13 3f27e873-4e3c-402f-9435-f87ec9f0203d miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0T2-01A-11R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11W-A097-09 c7918143-dbce-45b3-8d24-2993a9e2b7f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11W-A097-09 c7918143-dbce-45b3-8d24-2993a9e2b7f4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-01A TCGA-A2-A0T2-01A-11X-A098-09 77a8681d-9db3-4a01-b43a-96aa7c0d1490 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-10A TCGA-A2-A0T2-10A-01D-A086-02 d8120e7f-d08c-487d-8033-9e1e489ed5ff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-10A TCGA-A2-A0T2-10A-01D-A087-01 d60625fc-3e0c-4b31-9ad9-dfa48eaccac6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-10A TCGA-A2-A0T2-10A-01D-A087-01 d60625fc-3e0c-4b31-9ad9-dfa48eaccac6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G05_697994.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0T2 TCGA-A2-A0T2-10A TCGA-A2-A0T2-10A-01D-A087-01 d60625fc-3e0c-4b31-9ad9-dfa48eaccac6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G05_697994.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-10A TCGA-A2-A0T2-10A-01D-A087-01 d60625fc-3e0c-4b31-9ad9-dfa48eaccac6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G05_697994.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-10A TCGA-A2-A0T2-10A-01D-A087-01 d60625fc-3e0c-4b31-9ad9-dfa48eaccac6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G05_697994.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-10A TCGA-A2-A0T2-10A-01D-A087-01 d60625fc-3e0c-4b31-9ad9-dfa48eaccac6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G05_697994.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-10A TCGA-A2-A0T2-10A-01D-A087-01 d60625fc-3e0c-4b31-9ad9-dfa48eaccac6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G05_697994.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-10A TCGA-A2-A0T2-10A-01D-A087-01 d60625fc-3e0c-4b31-9ad9-dfa48eaccac6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G05_697994.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-10A TCGA-A2-A0T2-10A-01D-A087-01 d60625fc-3e0c-4b31-9ad9-dfa48eaccac6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G05_697994.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-10A TCGA-A2-A0T2-10A-01D-A099-09 5b5581e0-8d87-47db-a789-bc943c4cd6e9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-10A TCGA-A2-A0T2-10A-01D-A099-09 5b5581e0-8d87-47db-a789-bc943c4cd6e9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-10A TCGA-A2-A0T2-10A-01W-A097-09 cac98825-530b-469d-ba6d-f53209d1cca6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T2 TCGA-A2-A0T2-10A TCGA-A2-A0T2-10A-01X-A098-09 6a03d0a6-f9ec-4950-b892-f00ee562aefe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-01A TCGA-A2-A0T3-01A-21D-A10X-02 b46de623-17a2-407d-ba9c-2eda8ca2ab51 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-01A TCGA-A2-A0T3-01A-21D-A10Y-09 0ca029bb-3b3a-48ec-8ade-5591e8e8629f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-01A TCGA-A2-A0T3-01A-21D-A10Y-09 0ca029bb-3b3a-48ec-8ade-5591e8e8629f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-01A TCGA-A2-A0T3-01A-21D-A111-01 e4aa08a3-8089-4ed2-a6f3-8778934936d9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-01A TCGA-A2-A0T3-01A-21D-A111-01 e4aa08a3-8089-4ed2-a6f3-8778934936d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F08_735142.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-A2-A0T3 TCGA-A2-A0T3-01A TCGA-A2-A0T3-01A-21D-A111-01 e4aa08a3-8089-4ed2-a6f3-8778934936d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F08_735142.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-01A TCGA-A2-A0T3-01A-21D-A111-01 e4aa08a3-8089-4ed2-a6f3-8778934936d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F08_735142.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-01A TCGA-A2-A0T3-01A-21D-A111-01 e4aa08a3-8089-4ed2-a6f3-8778934936d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F08_735142.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-01A TCGA-A2-A0T3-01A-21D-A111-01 e4aa08a3-8089-4ed2-a6f3-8778934936d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F08_735142.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-01A TCGA-A2-A0T3-01A-21D-A111-01 e4aa08a3-8089-4ed2-a6f3-8778934936d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F08_735142.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-01A TCGA-A2-A0T3-01A-21D-A111-01 e4aa08a3-8089-4ed2-a6f3-8778934936d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F08_735142.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-01A TCGA-A2-A0T3-01A-21D-A111-01 e4aa08a3-8089-4ed2-a6f3-8778934936d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F08_735142.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-01A TCGA-A2-A0T3-01A-21D-A112-05 c7a7f093-2c94-40b5-8573-58c6d8e63241 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-01A TCGA-A2-A0T3-01A-21D-A112-05 c7a7f093-2c94-40b5-8573-58c6d8e63241 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-A2-A0T3-01A-21D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-01A TCGA-A2-A0T3-01A-21D-A112-05 c7a7f093-2c94-40b5-8573-58c6d8e63241 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-A2-A0T3-01A-21D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-01A TCGA-A2-A0T3-01A-21D-A112-05 c7a7f093-2c94-40b5-8573-58c6d8e63241 DNA Methylation HumanMethylation27 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-01A TCGA-A2-A0T3-01A-21R-A115-07 d0f11931-ddcc-4cd5-8dfc-8ef984aa8a32 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012822_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-A2-A0T3 TCGA-A2-A0T3-01A TCGA-A2-A0T3-01A-21R-A115-07 d0f11931-ddcc-4cd5-8dfc-8ef984aa8a32 Expression-Genes AgilentG4502A_07_3 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_447865.TCGA-A2-A0T3-01A-21R-A115-07.110620_UNC11-SN627_0109_AD0CNFABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-01A TCGA-A2-A0T3-01A-21R-A115-07 d0f11931-ddcc-4cd5-8dfc-8ef984aa8a32 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_447915.TCGA-A2-A0T3-01A-21R-A115-07.110620_UNC11-SN627_0109_AD0CNFABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-01A TCGA-A2-A0T3-01A-21R-A115-07 d0f11931-ddcc-4cd5-8dfc-8ef984aa8a32 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_447935.TCGA-A2-A0T3-01A-21R-A115-07.110620_UNC11-SN627_0109_AD0CNFABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-01A TCGA-A2-A0T3-01A-21W-A12T-09 fe04243a-7ffc-46ff-b214-03c27493af38 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-10A TCGA-A2-A0T3-10A-01D-A10Z-02 e08e6c2f-ba27-4c2d-9e75-89e2955a0dc5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-10A TCGA-A2-A0T3-10A-01D-A110-09 2c1a2795-e195-4f8d-a062-373aab5c50fc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-10A TCGA-A2-A0T3-10A-01D-A110-09 2c1a2795-e195-4f8d-a062-373aab5c50fc Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-10A TCGA-A2-A0T3-10A-01D-A113-01 1b938b21-4bf9-4b42-83b1-ea0c0a1823e1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-10A TCGA-A2-A0T3-10A-01D-A113-01 1b938b21-4bf9-4b42-83b1-ea0c0a1823e1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H01_735022.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-A2-A0T3 TCGA-A2-A0T3-10A TCGA-A2-A0T3-10A-01D-A113-01 1b938b21-4bf9-4b42-83b1-ea0c0a1823e1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H01_735022.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-10A TCGA-A2-A0T3-10A-01D-A113-01 1b938b21-4bf9-4b42-83b1-ea0c0a1823e1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H01_735022.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-10A TCGA-A2-A0T3-10A-01D-A113-01 1b938b21-4bf9-4b42-83b1-ea0c0a1823e1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H01_735022.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-10A TCGA-A2-A0T3-10A-01D-A113-01 1b938b21-4bf9-4b42-83b1-ea0c0a1823e1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H01_735022.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-10A TCGA-A2-A0T3-10A-01D-A113-01 1b938b21-4bf9-4b42-83b1-ea0c0a1823e1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H01_735022.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-10A TCGA-A2-A0T3-10A-01D-A113-01 1b938b21-4bf9-4b42-83b1-ea0c0a1823e1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H01_735022.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-10A TCGA-A2-A0T3-10A-01D-A113-01 1b938b21-4bf9-4b42-83b1-ea0c0a1823e1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H01_735022.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-A2-A0T3 TCGA-A2-A0T3-10A TCGA-A2-A0T3-10A-01W-A12U-09 533d8760-b206-47c3-a9e8-11f7ab08e769 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-01A TCGA-A2-A0T4-01A-31D-A086-02 a186812e-e907-4dfe-b776-47e3a2ab97de Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-01A TCGA-A2-A0T4-01A-31D-A087-01 504fc7b4-3097-420e-b9e0-8981e934c2b6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-01A TCGA-A2-A0T4-01A-31D-A087-01 504fc7b4-3097-420e-b9e0-8981e934c2b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B01_698110.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0T4 TCGA-A2-A0T4-01A TCGA-A2-A0T4-01A-31D-A087-01 504fc7b4-3097-420e-b9e0-8981e934c2b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B01_698110.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-01A TCGA-A2-A0T4-01A-31D-A087-01 504fc7b4-3097-420e-b9e0-8981e934c2b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B01_698110.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-01A TCGA-A2-A0T4-01A-31D-A087-01 504fc7b4-3097-420e-b9e0-8981e934c2b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B01_698110.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-01A TCGA-A2-A0T4-01A-31D-A087-01 504fc7b4-3097-420e-b9e0-8981e934c2b6 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B01_698110.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-01A TCGA-A2-A0T4-01A-31D-A087-01 504fc7b4-3097-420e-b9e0-8981e934c2b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B01_698110.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-01A TCGA-A2-A0T4-01A-31D-A088-05 52d8ebc5-8821-4a5c-9086-1d9837793a3d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-01A TCGA-A2-A0T4-01A-31D-A099-09 0f1b1fda-4956-498a-b8ff-e98b5d64e509 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-01A TCGA-A2-A0T4-01A-31D-A099-09 0f1b1fda-4956-498a-b8ff-e98b5d64e509 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-01A TCGA-A2-A0T4-01A-31D-A099-09 0f1b1fda-4956-498a-b8ff-e98b5d64e509 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-01A TCGA-A2-A0T4-01A-31D-A10P-05 74ff018b-9aed-4681-967e-e25da87c52a3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-01A TCGA-A2-A0T4-01A-31D-A10P-05 74ff018b-9aed-4681-967e-e25da87c52a3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791020_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-01A TCGA-A2-A0T4-01A-31D-A10P-05 74ff018b-9aed-4681-967e-e25da87c52a3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791020_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-01A TCGA-A2-A0T4-01A-31D-A10P-05 74ff018b-9aed-4681-967e-e25da87c52a3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-A2-A0T4-01A-31D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-01A TCGA-A2-A0T4-01A-31D-A10P-05 74ff018b-9aed-4681-967e-e25da87c52a3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-A2-A0T4-01A-31D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-01A TCGA-A2-A0T4-01A-31R-A084-07 09787ddc-336f-4a53-a687-339d90457085 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-01A TCGA-A2-A0T4-01A-31R-A084-07 09787ddc-336f-4a53-a687-339d90457085 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012596_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-A2-A0T4 TCGA-A2-A0T4-01A TCGA-A2-A0T4-01A-31R-A084-07 09787ddc-336f-4a53-a687-339d90457085 Expression-Genes AgilentG4502A_07_3 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443672.TCGA-A2-A0T4-01A-31R-A084-07.110315_UNC9-SN296_0160_BB05L8ABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-01A TCGA-A2-A0T4-01A-31R-A084-07 09787ddc-336f-4a53-a687-339d90457085 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_444055.TCGA-A2-A0T4-01A-31R-A084-07.110315_UNC9-SN296_0160_BB05L8ABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-01A TCGA-A2-A0T4-01A-31R-A084-07 09787ddc-336f-4a53-a687-339d90457085 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_444083.TCGA-A2-A0T4-01A-31R-A084-07.110315_UNC9-SN296_0160_BB05L8ABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-01A TCGA-A2-A0T4-01A-31R-A085-13 1db09bfd-949c-4170-b8ea-2ff4ba9135d0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-01A TCGA-A2-A0T4-01A-31R-A085-13 1db09bfd-949c-4170-b8ea-2ff4ba9135d0 miRNASeq IlluminaGA_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-01A TCGA-A2-A0T4-01A-31X-A098-09 6a267394-85b4-44c5-bdc6-696379ce2a37 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-10A TCGA-A2-A0T4-10A-01D-A086-02 58d5a8bc-c8d8-4d8d-98f3-8a7b0cfdb357 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-10A TCGA-A2-A0T4-10A-01D-A087-01 e0dcdaa6-f5c7-4851-a1a1-1a087e48b8bc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-10A TCGA-A2-A0T4-10A-01D-A087-01 e0dcdaa6-f5c7-4851-a1a1-1a087e48b8bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F01_698076.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0T4 TCGA-A2-A0T4-10A TCGA-A2-A0T4-10A-01D-A087-01 e0dcdaa6-f5c7-4851-a1a1-1a087e48b8bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F01_698076.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-10A TCGA-A2-A0T4-10A-01D-A087-01 e0dcdaa6-f5c7-4851-a1a1-1a087e48b8bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F01_698076.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-10A TCGA-A2-A0T4-10A-01D-A087-01 e0dcdaa6-f5c7-4851-a1a1-1a087e48b8bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F01_698076.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-10A TCGA-A2-A0T4-10A-01D-A087-01 e0dcdaa6-f5c7-4851-a1a1-1a087e48b8bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F01_698076.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-10A TCGA-A2-A0T4-10A-01D-A087-01 e0dcdaa6-f5c7-4851-a1a1-1a087e48b8bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F01_698076.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-10A TCGA-A2-A0T4-10A-01D-A087-01 e0dcdaa6-f5c7-4851-a1a1-1a087e48b8bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F01_698076.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-10A TCGA-A2-A0T4-10A-01D-A087-01 e0dcdaa6-f5c7-4851-a1a1-1a087e48b8bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F01_698076.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-10A TCGA-A2-A0T4-10A-01D-A099-09 ab57a14c-8ada-4971-8cbd-22a455256bd4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-10A TCGA-A2-A0T4-10A-01D-A099-09 ab57a14c-8ada-4971-8cbd-22a455256bd4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-10A TCGA-A2-A0T4-10A-01D-A099-09 ab57a14c-8ada-4971-8cbd-22a455256bd4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-10A TCGA-A2-A0T4-10A-01W-A097-09 85351650-e253-4b5b-8474-699077e90e39 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T4 TCGA-A2-A0T4-10A TCGA-A2-A0T4-10A-01X-A098-09 f21376d1-38ce-405d-8d38-cc551ff1099c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21D-A086-02 5cf56003-b69b-4f13-8067-541bfba1e109 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21D-A087-01 05cc8716-27bb-48f1-8bf7-563a728a1873 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21D-A087-01 05cc8716-27bb-48f1-8bf7-563a728a1873 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D02_697978.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21D-A087-01 05cc8716-27bb-48f1-8bf7-563a728a1873 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D02_697978.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21D-A087-01 05cc8716-27bb-48f1-8bf7-563a728a1873 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D02_697978.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21D-A087-01 05cc8716-27bb-48f1-8bf7-563a728a1873 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D02_697978.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21D-A087-01 05cc8716-27bb-48f1-8bf7-563a728a1873 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D02_697978.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21D-A087-01 05cc8716-27bb-48f1-8bf7-563a728a1873 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D02_697978.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21D-A087-01 05cc8716-27bb-48f1-8bf7-563a728a1873 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D02_697978.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21D-A087-01 05cc8716-27bb-48f1-8bf7-563a728a1873 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D02_697978.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21D-A088-05 edd0ebfa-c4de-4d20-8436-eb178fe968c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21D-A099-09 93772a4b-d2bc-44e3-837e-fe71ecd4e9aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21D-A10P-05 cb82cfef-de5b-4e37-9e48-9b71d37d8169 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21D-A10P-05 cb82cfef-de5b-4e37-9e48-9b71d37d8169 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791010_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21D-A10P-05 cb82cfef-de5b-4e37-9e48-9b71d37d8169 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791010_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21D-A10P-05 cb82cfef-de5b-4e37-9e48-9b71d37d8169 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-A2-A0T5-01A-21D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21D-A10P-05 cb82cfef-de5b-4e37-9e48-9b71d37d8169 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-A2-A0T5-01A-21D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21R-A084-07 4c15b588-6017-4f0c-9b66-4f18122acc83 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21R-A084-07 4c15b588-6017-4f0c-9b66-4f18122acc83 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012617_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21R-A084-07 4c15b588-6017-4f0c-9b66-4f18122acc83 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012617_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21R-A084-07 4c15b588-6017-4f0c-9b66-4f18122acc83 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012617_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21R-A084-07 4c15b588-6017-4f0c-9b66-4f18122acc83 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476947.TCGA-A2-A0T5-01A-21R-A084-07.110406_UNC13-SN749_0049_AC008AABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21R-A084-07 4c15b588-6017-4f0c-9b66-4f18122acc83 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476986.TCGA-A2-A0T5-01A-21R-A084-07.110406_UNC13-SN749_0049_AC008AABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21R-A084-07 4c15b588-6017-4f0c-9b66-4f18122acc83 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477003.TCGA-A2-A0T5-01A-21R-A084-07.110406_UNC13-SN749_0049_AC008AABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21R-A085-13 6520b53c-1ed2-4fc8-ac1b-427579826a03 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21R-A085-13 6520b53c-1ed2-4fc8-ac1b-427579826a03 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0T5-01A-21R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21R-A085-13 6520b53c-1ed2-4fc8-ac1b-427579826a03 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0T5-01A-21R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21W-A097-09 3db6d1ee-f7b0-4432-b868-fcaebc01e5d3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-01A TCGA-A2-A0T5-01A-21X-A098-09 2b3f4492-3039-4b50-b48e-5cbbf3244aeb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-10A TCGA-A2-A0T5-10A-01D-A086-02 a72eda99-6f09-4126-921c-32886ab95938 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-10A TCGA-A2-A0T5-10A-01D-A087-01 94fe7176-b1c4-4ad3-a5ac-5bdef9b4b32f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-10A TCGA-A2-A0T5-10A-01D-A087-01 94fe7176-b1c4-4ad3-a5ac-5bdef9b4b32f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G11_698066.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0T5 TCGA-A2-A0T5-10A TCGA-A2-A0T5-10A-01D-A087-01 94fe7176-b1c4-4ad3-a5ac-5bdef9b4b32f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G11_698066.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-10A TCGA-A2-A0T5-10A-01D-A087-01 94fe7176-b1c4-4ad3-a5ac-5bdef9b4b32f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G11_698066.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-10A TCGA-A2-A0T5-10A-01D-A087-01 94fe7176-b1c4-4ad3-a5ac-5bdef9b4b32f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G11_698066.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-10A TCGA-A2-A0T5-10A-01D-A087-01 94fe7176-b1c4-4ad3-a5ac-5bdef9b4b32f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G11_698066.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-10A TCGA-A2-A0T5-10A-01D-A087-01 94fe7176-b1c4-4ad3-a5ac-5bdef9b4b32f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G11_698066.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-10A TCGA-A2-A0T5-10A-01D-A087-01 94fe7176-b1c4-4ad3-a5ac-5bdef9b4b32f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G11_698066.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-10A TCGA-A2-A0T5-10A-01D-A087-01 94fe7176-b1c4-4ad3-a5ac-5bdef9b4b32f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G11_698066.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-10A TCGA-A2-A0T5-10A-01D-A099-09 a6f453e4-153d-489b-b138-b0a0e519e88c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-10A TCGA-A2-A0T5-10A-01W-A097-09 0ca798a6-16c7-4d5d-a921-96935b4db456 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T5 TCGA-A2-A0T5-10A TCGA-A2-A0T5-10A-01X-A098-09 71da6343-1476-4808-9329-e32d7afaecee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11D-A086-02 db44d873-8580-452a-ab2a-d80917483e52 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11D-A087-01 c6bd807e-dcb7-4f05-bba1-5caf20e43415 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11D-A087-01 c6bd807e-dcb7-4f05-bba1-5caf20e43415 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F05_698150.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11D-A087-01 c6bd807e-dcb7-4f05-bba1-5caf20e43415 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F05_698150.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11D-A087-01 c6bd807e-dcb7-4f05-bba1-5caf20e43415 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F05_698150.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11D-A087-01 c6bd807e-dcb7-4f05-bba1-5caf20e43415 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F05_698150.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11D-A087-01 c6bd807e-dcb7-4f05-bba1-5caf20e43415 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F05_698150.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11D-A087-01 c6bd807e-dcb7-4f05-bba1-5caf20e43415 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F05_698150.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11D-A087-01 c6bd807e-dcb7-4f05-bba1-5caf20e43415 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F05_698150.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11D-A087-01 c6bd807e-dcb7-4f05-bba1-5caf20e43415 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F05_698150.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11D-A088-05 281f805c-d371-4de1-8b84-4797de1e8eff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11D-A099-09 e4dcb280-c309-4ebb-a58d-e6389a0306ee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11D-A099-09 e4dcb280-c309-4ebb-a58d-e6389a0306ee Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11D-A10P-05 11ef2491-7e34-43de-a4a2-cb39960cffdd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11D-A10P-05 11ef2491-7e34-43de-a4a2-cb39960cffdd DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791004_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11D-A10P-05 11ef2491-7e34-43de-a4a2-cb39960cffdd DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791004_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11D-A10P-05 11ef2491-7e34-43de-a4a2-cb39960cffdd DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-A2-A0T6-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11D-A10P-05 11ef2491-7e34-43de-a4a2-cb39960cffdd DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-A2-A0T6-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11R-A084-07 e3639f71-cfe7-46c7-8390-73f8043ac6b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11R-A084-07 e3639f71-cfe7-46c7-8390-73f8043ac6b0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012622_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11R-A084-07 e3639f71-cfe7-46c7-8390-73f8043ac6b0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012622_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11R-A084-07 e3639f71-cfe7-46c7-8390-73f8043ac6b0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012622_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11R-A084-07 e3639f71-cfe7-46c7-8390-73f8043ac6b0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477208.TCGA-A2-A0T6-01A-11R-A084-07.110406_UNC13-SN749_0049_AC008AABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11R-A084-07 e3639f71-cfe7-46c7-8390-73f8043ac6b0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477240.TCGA-A2-A0T6-01A-11R-A084-07.110406_UNC13-SN749_0049_AC008AABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11R-A084-07 e3639f71-cfe7-46c7-8390-73f8043ac6b0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477289.TCGA-A2-A0T6-01A-11R-A084-07.110406_UNC13-SN749_0049_AC008AABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11R-A085-13 27c0157d-3562-4b5d-ba36-ef7be5536860 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11R-A085-13 27c0157d-3562-4b5d-ba36-ef7be5536860 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0T6-01A-11R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11R-A085-13 27c0157d-3562-4b5d-ba36-ef7be5536860 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0T6-01A-11R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11W-A097-09 dac89828-fdf4-4945-acb9-762d5b53a667 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-01A TCGA-A2-A0T6-01A-11X-A098-09 76b0312b-ed41-423d-a757-2cacaf86fd29 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-10A TCGA-A2-A0T6-10A-01D-A086-02 a2e3add5-6d4a-40b2-8d77-66c066efda29 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-10A TCGA-A2-A0T6-10A-01D-A087-01 1879b602-320d-4c95-9233-a66b45aec1fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-10A TCGA-A2-A0T6-10A-01D-A087-01 1879b602-320d-4c95-9233-a66b45aec1fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D06_698108.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0T6 TCGA-A2-A0T6-10A TCGA-A2-A0T6-10A-01D-A087-01 1879b602-320d-4c95-9233-a66b45aec1fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D06_698108.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-10A TCGA-A2-A0T6-10A-01D-A087-01 1879b602-320d-4c95-9233-a66b45aec1fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D06_698108.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-10A TCGA-A2-A0T6-10A-01D-A087-01 1879b602-320d-4c95-9233-a66b45aec1fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D06_698108.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-10A TCGA-A2-A0T6-10A-01D-A087-01 1879b602-320d-4c95-9233-a66b45aec1fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D06_698108.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-10A TCGA-A2-A0T6-10A-01D-A087-01 1879b602-320d-4c95-9233-a66b45aec1fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D06_698108.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-10A TCGA-A2-A0T6-10A-01D-A087-01 1879b602-320d-4c95-9233-a66b45aec1fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D06_698108.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-10A TCGA-A2-A0T6-10A-01D-A087-01 1879b602-320d-4c95-9233-a66b45aec1fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D06_698108.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-10A TCGA-A2-A0T6-10A-01D-A099-09 f0f5e37a-90f7-4800-b7d2-a514e8be3a13 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-10A TCGA-A2-A0T6-10A-01D-A099-09 f0f5e37a-90f7-4800-b7d2-a514e8be3a13 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-10A TCGA-A2-A0T6-10A-01W-A097-09 4a821690-b209-48ef-8f05-a09133f24bb5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T6 TCGA-A2-A0T6-10A TCGA-A2-A0T6-10A-01X-A098-09 c51fc969-012b-48e0-8fe5-4c1fbbbaacc4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21D-A086-02 88184ac3-0397-4a59-baad-65873852a032 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21D-A087-01 1dafc3c4-349e-4af4-871c-566f44080b09 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21D-A087-01 1dafc3c4-349e-4af4-871c-566f44080b09 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F08_698006.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21D-A087-01 1dafc3c4-349e-4af4-871c-566f44080b09 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F08_698006.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21D-A087-01 1dafc3c4-349e-4af4-871c-566f44080b09 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F08_698006.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21D-A087-01 1dafc3c4-349e-4af4-871c-566f44080b09 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F08_698006.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21D-A087-01 1dafc3c4-349e-4af4-871c-566f44080b09 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F08_698006.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21D-A087-01 1dafc3c4-349e-4af4-871c-566f44080b09 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F08_698006.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21D-A087-01 1dafc3c4-349e-4af4-871c-566f44080b09 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F08_698006.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21D-A087-01 1dafc3c4-349e-4af4-871c-566f44080b09 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F08_698006.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21D-A088-05 0ae18a36-24a0-4106-a74a-e57469d8df94 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21D-A099-09 3ea4d98d-f8d9-433e-94f1-b0199bfdb198 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21D-A099-09 3ea4d98d-f8d9-433e-94f1-b0199bfdb198 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21D-A099-09 3ea4d98d-f8d9-433e-94f1-b0199bfdb198 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21D-A10P-05 8206742b-fb39-4e73-9b3b-021162a7fc23 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21D-A10P-05 8206742b-fb39-4e73-9b3b-021162a7fc23 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791010_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21D-A10P-05 8206742b-fb39-4e73-9b3b-021162a7fc23 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791010_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21D-A10P-05 8206742b-fb39-4e73-9b3b-021162a7fc23 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-A2-A0T7-01A-21D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21D-A10P-05 8206742b-fb39-4e73-9b3b-021162a7fc23 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-A2-A0T7-01A-21D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21R-A084-07 b5de3654-8983-45ab-a83a-d15284740d39 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21R-A084-07 b5de3654-8983-45ab-a83a-d15284740d39 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012627_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21R-A084-07 b5de3654-8983-45ab-a83a-d15284740d39 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012627_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21R-A084-07 b5de3654-8983-45ab-a83a-d15284740d39 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012627_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21R-A084-07 b5de3654-8983-45ab-a83a-d15284740d39 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_472371.TCGA-A2-A0T7-01A-21R-A084-07.110426_UNC12-SN629_0077_AB08WNABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21R-A084-07 b5de3654-8983-45ab-a83a-d15284740d39 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_472470.TCGA-A2-A0T7-01A-21R-A084-07.110426_UNC12-SN629_0077_AB08WNABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21R-A084-07 b5de3654-8983-45ab-a83a-d15284740d39 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_472522.TCGA-A2-A0T7-01A-21R-A084-07.110426_UNC12-SN629_0077_AB08WNABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21R-A085-13 13785589-b647-44da-9ec2-3d7e889e4ea6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21R-A085-13 13785589-b647-44da-9ec2-3d7e889e4ea6 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0T7-01A-21R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21R-A085-13 13785589-b647-44da-9ec2-3d7e889e4ea6 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0T7-01A-21R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21W-A097-09 4848ca28-634b-46dc-9db6-86a96bdbb010 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-01A TCGA-A2-A0T7-01A-21X-A098-09 ddd3b6a3-7e81-4ee5-820c-427a1858e828 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-10A TCGA-A2-A0T7-10A-01D-A086-02 d5552d6b-cee1-4b39-9e3b-e3f6764c78dd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-10A TCGA-A2-A0T7-10A-01D-A087-01 6a9b4f12-aa40-42d2-80ac-1a74615ae00b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-10A TCGA-A2-A0T7-10A-01D-A087-01 6a9b4f12-aa40-42d2-80ac-1a74615ae00b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H05_698028.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A2-A0T7 TCGA-A2-A0T7-10A TCGA-A2-A0T7-10A-01D-A087-01 6a9b4f12-aa40-42d2-80ac-1a74615ae00b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H05_698028.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-10A TCGA-A2-A0T7-10A-01D-A087-01 6a9b4f12-aa40-42d2-80ac-1a74615ae00b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H05_698028.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-10A TCGA-A2-A0T7-10A-01D-A087-01 6a9b4f12-aa40-42d2-80ac-1a74615ae00b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H05_698028.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-10A TCGA-A2-A0T7-10A-01D-A087-01 6a9b4f12-aa40-42d2-80ac-1a74615ae00b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H05_698028.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-10A TCGA-A2-A0T7-10A-01D-A087-01 6a9b4f12-aa40-42d2-80ac-1a74615ae00b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H05_698028.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-10A TCGA-A2-A0T7-10A-01D-A087-01 6a9b4f12-aa40-42d2-80ac-1a74615ae00b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H05_698028.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-10A TCGA-A2-A0T7-10A-01D-A087-01 6a9b4f12-aa40-42d2-80ac-1a74615ae00b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H05_698028.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-10A TCGA-A2-A0T7-10A-01D-A099-09 605ddfcb-4ee9-4dd3-bc87-4460cb63662f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-10A TCGA-A2-A0T7-10A-01D-A099-09 605ddfcb-4ee9-4dd3-bc87-4460cb63662f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-10A TCGA-A2-A0T7-10A-01D-A099-09 605ddfcb-4ee9-4dd3-bc87-4460cb63662f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-10A TCGA-A2-A0T7-10A-01W-A097-09 b993b509-8894-4a63-bf88-bda82e8bbc65 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0T7 TCGA-A2-A0T7-10A TCGA-A2-A0T7-10A-01X-A098-09 a0a9cbe6-b6ca-44c3-a509-c52f78f91f2d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0T7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11D-A106-02 144d6227-40cf-4401-97a0-acb80f037a88 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11D-A107-01 bac34a30-d37a-4bd6-a196-ff72ecd07e65 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11D-A107-01 bac34a30-d37a-4bd6-a196-ff72ecd07e65 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A06_731070.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11D-A107-01 bac34a30-d37a-4bd6-a196-ff72ecd07e65 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A06_731070.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11D-A107-01 bac34a30-d37a-4bd6-a196-ff72ecd07e65 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A06_731070.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11D-A107-01 bac34a30-d37a-4bd6-a196-ff72ecd07e65 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A06_731070.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11D-A107-01 bac34a30-d37a-4bd6-a196-ff72ecd07e65 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A06_731070.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11D-A107-01 bac34a30-d37a-4bd6-a196-ff72ecd07e65 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A06_731070.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11D-A107-01 bac34a30-d37a-4bd6-a196-ff72ecd07e65 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A06_731070.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11D-A107-01 bac34a30-d37a-4bd6-a196-ff72ecd07e65 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A06_731070.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11D-A10A-05 40f3af46-fe00-4bf5-a064-367badadcdb4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11D-A10A-05 40f3af46-fe00-4bf5-a064-367badadcdb4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486029_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11D-A10A-05 40f3af46-fe00-4bf5-a064-367badadcdb4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486029_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11D-A10A-05 40f3af46-fe00-4bf5-a064-367badadcdb4 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11D-A117-09 4cccf7dc-7c53-409f-a6b1-f86e0f07250b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11D-A117-09 4cccf7dc-7c53-409f-a6b1-f86e0f07250b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11D-A117-09 4cccf7dc-7c53-409f-a6b1-f86e0f07250b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11R-A108-13 fda89a53-2f26-4f3c-b34a-1d2834f58f01 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11R-A108-13 fda89a53-2f26-4f3c-b34a-1d2834f58f01 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0YC-01A-11R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11R-A108-13 fda89a53-2f26-4f3c-b34a-1d2834f58f01 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0YC-01A-11R-A108-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11R-A109-07 40c2be3f-f14a-4ab2-845a-2c1c174a4be7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11R-A109-07 40c2be3f-f14a-4ab2-845a-2c1c174a4be7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012371_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11R-A109-07 40c2be3f-f14a-4ab2-845a-2c1c174a4be7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012371_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11R-A109-07 40c2be3f-f14a-4ab2-845a-2c1c174a4be7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012371_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11R-A109-07 40c2be3f-f14a-4ab2-845a-2c1c174a4be7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407826.TCGA-A2-A0YC-01A-11R-A109-07.110510_UNC15-SN850_0069_BC015CABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11R-A109-07 40c2be3f-f14a-4ab2-845a-2c1c174a4be7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407828.TCGA-A2-A0YC-01A-11R-A109-07.110510_UNC15-SN850_0069_BC015CABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11R-A109-07 40c2be3f-f14a-4ab2-845a-2c1c174a4be7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407881.TCGA-A2-A0YC-01A-11R-A109-07.110510_UNC15-SN850_0069_BC015CABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-01A TCGA-A2-A0YC-01A-11X-A10H-09 6f9b2ee8-9831-4e19-a445-880a7e91c7e7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-10A TCGA-A2-A0YC-10A-01D-A106-02 aac50b58-007d-49b1-b531-06261b879a0c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-10A TCGA-A2-A0YC-10A-01D-A107-01 9f522a4a-9e03-4758-a193-fae10221302c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-10A TCGA-A2-A0YC-10A-01D-A107-01 9f522a4a-9e03-4758-a193-fae10221302c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B10_731066.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-A2-A0YC TCGA-A2-A0YC-10A TCGA-A2-A0YC-10A-01D-A107-01 9f522a4a-9e03-4758-a193-fae10221302c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B10_731066.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-10A TCGA-A2-A0YC-10A-01D-A107-01 9f522a4a-9e03-4758-a193-fae10221302c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B10_731066.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-10A TCGA-A2-A0YC-10A-01D-A107-01 9f522a4a-9e03-4758-a193-fae10221302c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B10_731066.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-10A TCGA-A2-A0YC-10A-01D-A107-01 9f522a4a-9e03-4758-a193-fae10221302c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B10_731066.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-10A TCGA-A2-A0YC-10A-01D-A107-01 9f522a4a-9e03-4758-a193-fae10221302c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B10_731066.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-10A TCGA-A2-A0YC-10A-01D-A107-01 9f522a4a-9e03-4758-a193-fae10221302c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B10_731066.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-10A TCGA-A2-A0YC-10A-01D-A107-01 9f522a4a-9e03-4758-a193-fae10221302c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B10_731066.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-10A TCGA-A2-A0YC-10A-01D-A10G-09 57b5183f-1ef3-4f14-981e-2ecf416c387f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-10A TCGA-A2-A0YC-10A-01D-A10G-09 57b5183f-1ef3-4f14-981e-2ecf416c387f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0YC TCGA-A2-A0YC-10A TCGA-A2-A0YC-10A-01D-A10G-09 57b5183f-1ef3-4f14-981e-2ecf416c387f Somatic Mutations IlluminaGA_DNASeq 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1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-A2-A0YD TCGA-A2-A0YD-01A TCGA-A2-A0YD-01A-11D-A10A-05 c1220afb-2722-4265-b390-3c692378c9c1 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-A2-A0YD-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-A2-A0YD TCGA-A2-A0YD-01A TCGA-A2-A0YD-01A-11D-A10A-05 c1220afb-2722-4265-b390-3c692378c9c1 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-A2-A0YD-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-A2-A0YD TCGA-A2-A0YD-01A TCGA-A2-A0YD-01A-11D-A10G-09 30c9f9e5-90b2-4c73-bce5-eb6a3d31f496 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YD TCGA-A2-A0YD-01A TCGA-A2-A0YD-01A-11D-A10G-09 30c9f9e5-90b2-4c73-bce5-eb6a3d31f496 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0YD TCGA-A2-A0YD-01A TCGA-A2-A0YD-01A-11R-A108-13 321ebd47-1356-432d-91b4-bcd278e3b67d Complete Clinical Set bio 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1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YD TCGA-A2-A0YD-10A TCGA-A2-A0YD-10A-01D-A107-01 0f9789f4-a192-4ebb-b6ea-32ac9ccfc062 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G08_730988.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-A2-A0YD TCGA-A2-A0YD-10A TCGA-A2-A0YD-10A-01D-A107-01 0f9789f4-a192-4ebb-b6ea-32ac9ccfc062 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G08_730988.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YD TCGA-A2-A0YD-10A TCGA-A2-A0YD-10A-01D-A107-01 0f9789f4-a192-4ebb-b6ea-32ac9ccfc062 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G08_730988.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YD TCGA-A2-A0YD-10A TCGA-A2-A0YD-10A-01D-A107-01 0f9789f4-a192-4ebb-b6ea-32ac9ccfc062 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G08_730988.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YD TCGA-A2-A0YD-10A TCGA-A2-A0YD-10A-01D-A107-01 0f9789f4-a192-4ebb-b6ea-32ac9ccfc062 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G08_730988.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YD TCGA-A2-A0YD-10A TCGA-A2-A0YD-10A-01D-A107-01 0f9789f4-a192-4ebb-b6ea-32ac9ccfc062 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G08_730988.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YD TCGA-A2-A0YD-10A TCGA-A2-A0YD-10A-01D-A107-01 0f9789f4-a192-4ebb-b6ea-32ac9ccfc062 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G08_730988.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YD TCGA-A2-A0YD-10A TCGA-A2-A0YD-10A-01D-A107-01 0f9789f4-a192-4ebb-b6ea-32ac9ccfc062 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G08_730988.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-A2-A0YD TCGA-A2-A0YD-10A TCGA-A2-A0YD-10A-01D-A10G-09 d770c579-5a94-4ac5-a6db-3151b33e3a22 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YD TCGA-A2-A0YD-10A TCGA-A2-A0YD-10A-01D-A10G-09 d770c579-5a94-4ac5-a6db-3151b33e3a22 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0YD TCGA-A2-A0YD-10A TCGA-A2-A0YD-10A-01D-A117-09 58c4e217-9b87-46c8-86ea-30c9bd032d2b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YD TCGA-A2-A0YD-10A TCGA-A2-A0YD-10A-01X-A10H-09 975b6f61-ade2-4e7b-9379-d2759b44993c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-01A TCGA-A2-A0YE-01A-11D-A106-02 cae9c497-2444-451f-90d2-7e84fd8e9e7d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-01A TCGA-A2-A0YE-01A-11D-A107-01 c5387233-2168-406d-aa69-9e92df136d0d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-01A TCGA-A2-A0YE-01A-11D-A107-01 c5387233-2168-406d-aa69-9e92df136d0d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G10_730994.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-A2-A0YE TCGA-A2-A0YE-01A TCGA-A2-A0YE-01A-11D-A107-01 c5387233-2168-406d-aa69-9e92df136d0d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G10_730994.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-01A TCGA-A2-A0YE-01A-11D-A107-01 c5387233-2168-406d-aa69-9e92df136d0d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G10_730994.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-01A TCGA-A2-A0YE-01A-11D-A107-01 c5387233-2168-406d-aa69-9e92df136d0d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G10_730994.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-01A TCGA-A2-A0YE-01A-11D-A107-01 c5387233-2168-406d-aa69-9e92df136d0d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G10_730994.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-01A TCGA-A2-A0YE-01A-11D-A107-01 c5387233-2168-406d-aa69-9e92df136d0d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G10_730994.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-01A TCGA-A2-A0YE-01A-11D-A107-01 c5387233-2168-406d-aa69-9e92df136d0d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G10_730994.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-01A TCGA-A2-A0YE-01A-11D-A107-01 c5387233-2168-406d-aa69-9e92df136d0d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G10_730994.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-01A TCGA-A2-A0YE-01A-11D-A10A-05 7c5360ab-a279-489b-b959-88aada37424f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-01A TCGA-A2-A0YE-01A-11D-A10A-05 7c5360ab-a279-489b-b959-88aada37424f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486018_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-01A TCGA-A2-A0YE-01A-11D-A10A-05 7c5360ab-a279-489b-b959-88aada37424f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486018_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-01A TCGA-A2-A0YE-01A-11D-A10A-05 7c5360ab-a279-489b-b959-88aada37424f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-A2-A0YE-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-01A TCGA-A2-A0YE-01A-11D-A10A-05 7c5360ab-a279-489b-b959-88aada37424f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-A2-A0YE-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-01A TCGA-A2-A0YE-01A-11D-A10G-09 3a4ca2a3-9918-465b-823f-403419bd9740 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-01A TCGA-A2-A0YE-01A-11R-A108-13 0b8ef732-b8ca-49d1-9ed8-ece8bbc59900 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-01A TCGA-A2-A0YE-01A-11R-A109-07 7f57b9e7-1b1b-4e07-beb4-b877b7651f7b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-01A TCGA-A2-A0YE-01A-11R-A109-07 7f57b9e7-1b1b-4e07-beb4-b877b7651f7b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012390_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-01A TCGA-A2-A0YE-01A-11R-A109-07 7f57b9e7-1b1b-4e07-beb4-b877b7651f7b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012390_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-01A TCGA-A2-A0YE-01A-11R-A109-07 7f57b9e7-1b1b-4e07-beb4-b877b7651f7b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012390_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-01A TCGA-A2-A0YE-01A-11R-A109-07 7f57b9e7-1b1b-4e07-beb4-b877b7651f7b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407016.TCGA-A2-A0YE-01A-11R-A109-07.110510_UNC15-SN850_0069_BC015CABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-01A TCGA-A2-A0YE-01A-11R-A109-07 7f57b9e7-1b1b-4e07-beb4-b877b7651f7b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407018.TCGA-A2-A0YE-01A-11R-A109-07.110510_UNC15-SN850_0069_BC015CABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-01A TCGA-A2-A0YE-01A-11R-A109-07 7f57b9e7-1b1b-4e07-beb4-b877b7651f7b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407146.TCGA-A2-A0YE-01A-11R-A109-07.110510_UNC15-SN850_0069_BC015CABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-01A TCGA-A2-A0YE-01A-11X-A10H-09 0c8683b1-e5f8-4dd2-82a0-25fc1001269c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-10A TCGA-A2-A0YE-10A-01D-A106-02 fd351f0e-d078-4983-8f63-9268df382f5a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-10A TCGA-A2-A0YE-10A-01D-A107-01 33149334-b7c0-4730-9ae4-99a34b959fa2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-10A TCGA-A2-A0YE-10A-01D-A107-01 33149334-b7c0-4730-9ae4-99a34b959fa2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H09_730976.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-A2-A0YE TCGA-A2-A0YE-10A TCGA-A2-A0YE-10A-01D-A107-01 33149334-b7c0-4730-9ae4-99a34b959fa2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H09_730976.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-10A TCGA-A2-A0YE-10A-01D-A107-01 33149334-b7c0-4730-9ae4-99a34b959fa2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H09_730976.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-10A TCGA-A2-A0YE-10A-01D-A107-01 33149334-b7c0-4730-9ae4-99a34b959fa2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H09_730976.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-10A TCGA-A2-A0YE-10A-01D-A107-01 33149334-b7c0-4730-9ae4-99a34b959fa2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H09_730976.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-10A TCGA-A2-A0YE-10A-01D-A107-01 33149334-b7c0-4730-9ae4-99a34b959fa2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H09_730976.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-10A TCGA-A2-A0YE-10A-01D-A107-01 33149334-b7c0-4730-9ae4-99a34b959fa2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H09_730976.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-10A TCGA-A2-A0YE-10A-01D-A107-01 33149334-b7c0-4730-9ae4-99a34b959fa2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H09_730976.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-10A TCGA-A2-A0YE-10A-01D-A10G-09 55851e9c-80b4-4bde-a645-c29a84f61a20 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YE TCGA-A2-A0YE-10A TCGA-A2-A0YE-10A-01X-A10H-09 9cc0d290-210a-4734-ac8a-16736e05cf71 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21D-A106-02 e6336c45-99aa-4341-a2cc-0b2d00a37490 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21D-A107-01 fb2d1af2-81a7-4eb7-8a49-e6448c76e44e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21D-A107-01 fb2d1af2-81a7-4eb7-8a49-e6448c76e44e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H02_730964.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21D-A107-01 fb2d1af2-81a7-4eb7-8a49-e6448c76e44e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H02_730964.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21D-A107-01 fb2d1af2-81a7-4eb7-8a49-e6448c76e44e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H02_730964.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21D-A107-01 fb2d1af2-81a7-4eb7-8a49-e6448c76e44e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H02_730964.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21D-A107-01 fb2d1af2-81a7-4eb7-8a49-e6448c76e44e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H02_730964.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21D-A107-01 fb2d1af2-81a7-4eb7-8a49-e6448c76e44e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H02_730964.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21D-A107-01 fb2d1af2-81a7-4eb7-8a49-e6448c76e44e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H02_730964.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21D-A107-01 fb2d1af2-81a7-4eb7-8a49-e6448c76e44e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H02_730964.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21D-A10A-05 e5d411d0-1b8f-4161-b9d4-37ae287f40c5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21D-A10A-05 e5d411d0-1b8f-4161-b9d4-37ae287f40c5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486018_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21D-A10A-05 e5d411d0-1b8f-4161-b9d4-37ae287f40c5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486018_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21D-A10A-05 e5d411d0-1b8f-4161-b9d4-37ae287f40c5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-A2-A0YF-01A-21D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21D-A10A-05 e5d411d0-1b8f-4161-b9d4-37ae287f40c5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-A2-A0YF-01A-21D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21D-A10G-09 11571107-fe70-4140-afff-f4792a4fd473 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21D-A10G-09 11571107-fe70-4140-afff-f4792a4fd473 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21D-A10G-09 11571107-fe70-4140-afff-f4792a4fd473 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21R-A108-13 6ddf593b-3e78-4d4b-bb59-a6ee09f5a1b8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21R-A108-13 6ddf593b-3e78-4d4b-bb59-a6ee09f5a1b8 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0YF-01A-21R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21R-A108-13 6ddf593b-3e78-4d4b-bb59-a6ee09f5a1b8 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0YF-01A-21R-A108-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21R-A109-07 b3ac6331-6c8f-4165-add7-482aadf7fa68 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21R-A109-07 b3ac6331-6c8f-4165-add7-482aadf7fa68 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012395_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21R-A109-07 b3ac6331-6c8f-4165-add7-482aadf7fa68 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012395_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21R-A109-07 b3ac6331-6c8f-4165-add7-482aadf7fa68 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012395_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21R-A109-07 b3ac6331-6c8f-4165-add7-482aadf7fa68 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_466576.TCGA-A2-A0YF-01A-21R-A109-07.110506_UNC9-SN296_0179_AB0BEFABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21R-A109-07 b3ac6331-6c8f-4165-add7-482aadf7fa68 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_466642.TCGA-A2-A0YF-01A-21R-A109-07.110506_UNC9-SN296_0179_AB0BEFABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21R-A109-07 b3ac6331-6c8f-4165-add7-482aadf7fa68 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_466726.TCGA-A2-A0YF-01A-21R-A109-07.110506_UNC9-SN296_0179_AB0BEFABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-01A TCGA-A2-A0YF-01A-21X-A10H-09 7c91d712-cd28-4658-930d-0ace6afebc15 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-10A TCGA-A2-A0YF-10A-01D-A106-02 7324a287-b519-4389-9753-cfcac8557ac0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-10A TCGA-A2-A0YF-10A-01D-A107-01 4991d79c-bb64-4d08-869f-ab3dbfeb92b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-10A TCGA-A2-A0YF-10A-01D-A107-01 4991d79c-bb64-4d08-869f-ab3dbfeb92b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E07_730926.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-A2-A0YF TCGA-A2-A0YF-10A TCGA-A2-A0YF-10A-01D-A107-01 4991d79c-bb64-4d08-869f-ab3dbfeb92b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E07_730926.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-10A TCGA-A2-A0YF-10A-01D-A107-01 4991d79c-bb64-4d08-869f-ab3dbfeb92b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E07_730926.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-10A TCGA-A2-A0YF-10A-01D-A107-01 4991d79c-bb64-4d08-869f-ab3dbfeb92b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E07_730926.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-10A TCGA-A2-A0YF-10A-01D-A107-01 4991d79c-bb64-4d08-869f-ab3dbfeb92b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E07_730926.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-10A TCGA-A2-A0YF-10A-01D-A107-01 4991d79c-bb64-4d08-869f-ab3dbfeb92b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E07_730926.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-10A TCGA-A2-A0YF-10A-01D-A107-01 4991d79c-bb64-4d08-869f-ab3dbfeb92b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E07_730926.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-10A TCGA-A2-A0YF-10A-01D-A107-01 4991d79c-bb64-4d08-869f-ab3dbfeb92b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E07_730926.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-10A TCGA-A2-A0YF-10A-01D-A10G-09 0cf57576-caf9-46f4-9500-c7d5f1579b51 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-10A TCGA-A2-A0YF-10A-01D-A10G-09 0cf57576-caf9-46f4-9500-c7d5f1579b51 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-10A TCGA-A2-A0YF-10A-01D-A10G-09 0cf57576-caf9-46f4-9500-c7d5f1579b51 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0YF TCGA-A2-A0YF-10A TCGA-A2-A0YF-10A-01X-A10H-09 76b51185-bca0-40aa-8925-111219a3ee5f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21D-A106-02 1957b4ef-fae8-45f1-8e86-1fa795b70975 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21D-A107-01 2c4bb4d1-3f75-4aa5-aec3-c402ba52579e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21D-A107-01 2c4bb4d1-3f75-4aa5-aec3-c402ba52579e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F03_731034.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21D-A107-01 2c4bb4d1-3f75-4aa5-aec3-c402ba52579e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F03_731034.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21D-A107-01 2c4bb4d1-3f75-4aa5-aec3-c402ba52579e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F03_731034.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21D-A107-01 2c4bb4d1-3f75-4aa5-aec3-c402ba52579e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F03_731034.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21D-A107-01 2c4bb4d1-3f75-4aa5-aec3-c402ba52579e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F03_731034.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21D-A107-01 2c4bb4d1-3f75-4aa5-aec3-c402ba52579e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F03_731034.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21D-A107-01 2c4bb4d1-3f75-4aa5-aec3-c402ba52579e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F03_731034.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21D-A107-01 2c4bb4d1-3f75-4aa5-aec3-c402ba52579e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F03_731034.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21D-A10A-05 f85634db-3c08-4f7c-9511-711a85f6bee7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21D-A10A-05 f85634db-3c08-4f7c-9511-711a85f6bee7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486005_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21D-A10A-05 f85634db-3c08-4f7c-9511-711a85f6bee7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486005_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21D-A10A-05 f85634db-3c08-4f7c-9511-711a85f6bee7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-A2-A0YG-01A-21D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21D-A10A-05 f85634db-3c08-4f7c-9511-711a85f6bee7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-A2-A0YG-01A-21D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21D-A10G-09 bf82035c-9cd1-4355-acdd-8a007708e976 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21D-A10G-09 bf82035c-9cd1-4355-acdd-8a007708e976 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21D-A10G-09 bf82035c-9cd1-4355-acdd-8a007708e976 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21D-A117-09 a9daaede-675c-498a-97b0-6e6b90538bf1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21D-A19F-05 6c248508-f6e8-4560-bdbd-40bd7d30383d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21D-A19H-09 4d409156-3a36-4c63-9ad6-b6af34f27b06 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21R-A108-13 e94fa040-d0db-4fe4-b729-5d4fd8c0a1ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21R-A108-13 e94fa040-d0db-4fe4-b729-5d4fd8c0a1ef miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0YG-01A-21R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21R-A108-13 e94fa040-d0db-4fe4-b729-5d4fd8c0a1ef miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0YG-01A-21R-A108-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21R-A109-07 c539f561-93db-41f3-8d9f-71cd77a096a7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21R-A109-07 c539f561-93db-41f3-8d9f-71cd77a096a7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012685_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-01A TCGA-A2-A0YG-01A-21R-A109-07 c539f561-93db-41f3-8d9f-71cd77a096a7 Expression-Genes AgilentG4502A_07_3 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-10A TCGA-A2-A0YG-10A-01D-A107-01 81f9875d-fa85-4914-8fc2-2d81b8902e27 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-10A TCGA-A2-A0YG-10A-01D-A107-01 81f9875d-fa85-4914-8fc2-2d81b8902e27 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F05_730920.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-10A TCGA-A2-A0YG-10A-01D-A107-01 81f9875d-fa85-4914-8fc2-2d81b8902e27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F05_730920.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-10A TCGA-A2-A0YG-10A-01D-A10G-09 d2825bbf-6083-40da-bd62-f6e7c0cb0204 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-10A TCGA-A2-A0YG-10A-01D-A10G-09 d2825bbf-6083-40da-bd62-f6e7c0cb0204 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0YG TCGA-A2-A0YG-10A TCGA-A2-A0YG-10A-01D-A10G-09 d2825bbf-6083-40da-bd62-f6e7c0cb0204 Somatic Mutations IlluminaGA_DNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11D-A106-02 33dc0159-643e-40f5-b835-b4d6594b6b42 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11D-A107-01 2d4e7bff-a4ec-4bf0-9925-6b21b231f4b8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11D-A107-01 2d4e7bff-a4ec-4bf0-9925-6b21b231f4b8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F07_730980.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11D-A107-01 2d4e7bff-a4ec-4bf0-9925-6b21b231f4b8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F07_730980.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11D-A107-01 2d4e7bff-a4ec-4bf0-9925-6b21b231f4b8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F07_730980.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11D-A107-01 2d4e7bff-a4ec-4bf0-9925-6b21b231f4b8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F07_730980.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11D-A107-01 2d4e7bff-a4ec-4bf0-9925-6b21b231f4b8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F07_730980.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11D-A107-01 2d4e7bff-a4ec-4bf0-9925-6b21b231f4b8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F07_730980.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11D-A107-01 2d4e7bff-a4ec-4bf0-9925-6b21b231f4b8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F07_730980.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11D-A107-01 2d4e7bff-a4ec-4bf0-9925-6b21b231f4b8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F07_730980.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11D-A10A-05 e51289fe-e71f-40e9-8719-e79b87091ee3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11D-A10A-05 e51289fe-e71f-40e9-8719-e79b87091ee3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486005_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11D-A10A-05 e51289fe-e71f-40e9-8719-e79b87091ee3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486005_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11D-A10A-05 e51289fe-e71f-40e9-8719-e79b87091ee3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-A2-A0YH-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11D-A10A-05 e51289fe-e71f-40e9-8719-e79b87091ee3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-A2-A0YH-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11D-A10G-09 e5558a39-eab2-4216-ba88-b63c2de48b01 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11D-A10G-09 e5558a39-eab2-4216-ba88-b63c2de48b01 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11R-A108-13 ef0166d8-89d2-4b5c-b36a-efb2e971e77d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11R-A108-13 ef0166d8-89d2-4b5c-b36a-efb2e971e77d miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0YH-01A-11R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11R-A108-13 ef0166d8-89d2-4b5c-b36a-efb2e971e77d miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0YH-01A-11R-A108-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11R-A109-07 5275bc42-18a3-43d1-9dee-dfb80c39ba20 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11R-A109-07 5275bc42-18a3-43d1-9dee-dfb80c39ba20 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012690_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11R-A109-07 5275bc42-18a3-43d1-9dee-dfb80c39ba20 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012690_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11R-A109-07 5275bc42-18a3-43d1-9dee-dfb80c39ba20 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012690_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11R-A109-07 5275bc42-18a3-43d1-9dee-dfb80c39ba20 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446004.TCGA-A2-A0YH-01A-11R-A109-07.110824_UNC13-SN749_0101_BB0AHBABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11R-A109-07 5275bc42-18a3-43d1-9dee-dfb80c39ba20 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446006.TCGA-A2-A0YH-01A-11R-A109-07.110824_UNC13-SN749_0101_BB0AHBABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11R-A109-07 5275bc42-18a3-43d1-9dee-dfb80c39ba20 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446011.TCGA-A2-A0YH-01A-11R-A109-07.110824_UNC13-SN749_0101_BB0AHBABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-01A TCGA-A2-A0YH-01A-11X-A10H-09 97e03cf0-dbdc-4719-9b6f-5a09e1286ab1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-10A TCGA-A2-A0YH-10A-01D-A106-02 1338254b-2b79-4028-a6d6-b459c56763d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-10A TCGA-A2-A0YH-10A-01D-A107-01 c588e40b-2814-43fd-b94d-70e6f25e229d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-10A TCGA-A2-A0YH-10A-01D-A107-01 c588e40b-2814-43fd-b94d-70e6f25e229d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H06_730950.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-A2-A0YH TCGA-A2-A0YH-10A TCGA-A2-A0YH-10A-01D-A107-01 c588e40b-2814-43fd-b94d-70e6f25e229d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H06_730950.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-10A TCGA-A2-A0YH-10A-01D-A107-01 c588e40b-2814-43fd-b94d-70e6f25e229d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H06_730950.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-10A TCGA-A2-A0YH-10A-01D-A107-01 c588e40b-2814-43fd-b94d-70e6f25e229d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H06_730950.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-10A TCGA-A2-A0YH-10A-01D-A107-01 c588e40b-2814-43fd-b94d-70e6f25e229d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H06_730950.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-10A TCGA-A2-A0YH-10A-01D-A107-01 c588e40b-2814-43fd-b94d-70e6f25e229d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H06_730950.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-10A TCGA-A2-A0YH-10A-01D-A107-01 c588e40b-2814-43fd-b94d-70e6f25e229d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H06_730950.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-10A TCGA-A2-A0YH-10A-01D-A107-01 c588e40b-2814-43fd-b94d-70e6f25e229d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H06_730950.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-10A TCGA-A2-A0YH-10A-01D-A10G-09 b5036146-9005-41b6-ad70-1906a7c6c8c7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-10A TCGA-A2-A0YH-10A-01D-A10G-09 b5036146-9005-41b6-ad70-1906a7c6c8c7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-10A TCGA-A2-A0YH-10A-01D-A117-09 1622c898-2efc-4ce6-80ce-0ada3922c139 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YH TCGA-A2-A0YH-10A TCGA-A2-A0YH-10A-01X-A10H-09 d9cee730-94ef-47c6-aeee-e5b49a4d3b05 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YI TCGA-A2-A0YI-01A TCGA-A2-A0YI-01A-31D-A10K-02 fe3d7af4-fc49-442e-bc8a-43a64c4413aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-A2-A0YI TCGA-A2-A0YI-01A TCGA-A2-A0YI-01A-31D-A10L-01 9758cc40-6f04-4297-b933-dd2d0a938930 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-A2-A0YI TCGA-A2-A0YI-01A TCGA-A2-A0YI-01A-31D-A10L-01 9758cc40-6f04-4297-b933-dd2d0a938930 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F07_734710.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-A2-A0YI TCGA-A2-A0YI-01A TCGA-A2-A0YI-01A-31D-A10L-01 9758cc40-6f04-4297-b933-dd2d0a938930 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F07_734710.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-A2-A0YI TCGA-A2-A0YI-01A TCGA-A2-A0YI-01A-31D-A10L-01 9758cc40-6f04-4297-b933-dd2d0a938930 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F07_734710.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-A2-A0YI TCGA-A2-A0YI-01A TCGA-A2-A0YI-01A-31D-A10L-01 9758cc40-6f04-4297-b933-dd2d0a938930 SNP Genome_Wide_SNP_6 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1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-A2-A0YI TCGA-A2-A0YI-10A TCGA-A2-A0YI-10A-01D-A10L-01 fe301458-26a7-4062-a6a8-6237d8709f88 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D06_734736.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-A2-A0YI TCGA-A2-A0YI-10A TCGA-A2-A0YI-10A-01D-A10L-01 fe301458-26a7-4062-a6a8-6237d8709f88 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D06_734736.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-A2-A0YI TCGA-A2-A0YI-10A TCGA-A2-A0YI-10A-01D-A10L-01 fe301458-26a7-4062-a6a8-6237d8709f88 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D06_734736.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-A2-A0YI TCGA-A2-A0YI-10A TCGA-A2-A0YI-10A-01D-A10L-01 fe301458-26a7-4062-a6a8-6237d8709f88 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D06_734736.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-A2-A0YI TCGA-A2-A0YI-10A TCGA-A2-A0YI-10A-01D-A10L-01 fe301458-26a7-4062-a6a8-6237d8709f88 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D06_734736.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-A2-A0YI TCGA-A2-A0YI-10A TCGA-A2-A0YI-10A-01D-A10L-01 fe301458-26a7-4062-a6a8-6237d8709f88 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D06_734736.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-A2-A0YI TCGA-A2-A0YI-10A TCGA-A2-A0YI-10A-01D-A10L-01 fe301458-26a7-4062-a6a8-6237d8709f88 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D06_734736.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-A2-A0YI TCGA-A2-A0YI-10A TCGA-A2-A0YI-10A-01D-A10L-01 fe301458-26a7-4062-a6a8-6237d8709f88 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D06_734736.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-A2-A0YI TCGA-A2-A0YI-10A TCGA-A2-A0YI-10A-01D-A10M-09 9764d7b0-0bbc-44e5-9207-2215d542ed54 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-A2-A0YI TCGA-A2-A0YI-10A TCGA-A2-A0YI-10A-01D-A10M-09 9764d7b0-0bbc-44e5-9207-2215d542ed54 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0YI TCGA-A2-A0YI-10A TCGA-A2-A0YI-10A-01W-A124-09 aa86c730-63f4-49cf-a064-fae5b749dfac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11D-A106-02 34933ecd-a94e-4b8d-8088-e61d6414d76c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11D-A107-01 98c00874-2525-47b6-b555-ebd259cbbcd1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11D-A107-01 98c00874-2525-47b6-b555-ebd259cbbcd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D09_731074.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11D-A107-01 98c00874-2525-47b6-b555-ebd259cbbcd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D09_731074.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11D-A107-01 98c00874-2525-47b6-b555-ebd259cbbcd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D09_731074.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11D-A107-01 98c00874-2525-47b6-b555-ebd259cbbcd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D09_731074.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11D-A107-01 98c00874-2525-47b6-b555-ebd259cbbcd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D09_731074.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11D-A107-01 98c00874-2525-47b6-b555-ebd259cbbcd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D09_731074.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11D-A107-01 98c00874-2525-47b6-b555-ebd259cbbcd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D09_731074.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11D-A107-01 98c00874-2525-47b6-b555-ebd259cbbcd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D09_731074.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11D-A10A-05 1f2fe46a-68f0-4886-8849-c90394a2fd77 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11D-A10A-05 1f2fe46a-68f0-4886-8849-c90394a2fd77 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486029_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11D-A10A-05 1f2fe46a-68f0-4886-8849-c90394a2fd77 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486029_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11D-A10A-05 1f2fe46a-68f0-4886-8849-c90394a2fd77 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-A2-A0YJ-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11D-A10A-05 1f2fe46a-68f0-4886-8849-c90394a2fd77 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-A2-A0YJ-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11D-A10G-09 3fe8e99f-dce5-4df9-983e-efe63d56bdd5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11D-A10G-09 3fe8e99f-dce5-4df9-983e-efe63d56bdd5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11D-A10G-09 3fe8e99f-dce5-4df9-983e-efe63d56bdd5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11D-A117-09 a2e812ad-2120-46b7-aec4-47161c127bae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11R-A108-13 baf2bb0f-2a86-489d-8966-814c66ea311b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11R-A109-07 330bf4ac-9ed5-4bd1-93d0-f89b4f52bc19 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11R-A109-07 330bf4ac-9ed5-4bd1-93d0-f89b4f52bc19 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012307_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11R-A109-07 330bf4ac-9ed5-4bd1-93d0-f89b4f52bc19 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012307_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11R-A109-07 330bf4ac-9ed5-4bd1-93d0-f89b4f52bc19 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012307_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11R-A109-07 330bf4ac-9ed5-4bd1-93d0-f89b4f52bc19 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445833.TCGA-A2-A0YJ-01A-11R-A109-07.110824_UNC13-SN749_0101_BB0AHBABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11R-A109-07 330bf4ac-9ed5-4bd1-93d0-f89b4f52bc19 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445839.TCGA-A2-A0YJ-01A-11R-A109-07.110824_UNC13-SN749_0101_BB0AHBABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11R-A109-07 330bf4ac-9ed5-4bd1-93d0-f89b4f52bc19 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445845.TCGA-A2-A0YJ-01A-11R-A109-07.110824_UNC13-SN749_0101_BB0AHBABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-01A TCGA-A2-A0YJ-01A-11X-A10H-09 bb5ee969-b05f-4929-8b84-b19b44e6880f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-10A TCGA-A2-A0YJ-10A-01D-A106-02 adfae587-4b3a-4d5f-a27f-0338241bdd87 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-10A TCGA-A2-A0YJ-10A-01D-A107-01 a6bcbb65-545d-43c4-bc75-566233326ffd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-10A TCGA-A2-A0YJ-10A-01D-A107-01 a6bcbb65-545d-43c4-bc75-566233326ffd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H07_731050.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-A2-A0YJ TCGA-A2-A0YJ-10A TCGA-A2-A0YJ-10A-01D-A107-01 a6bcbb65-545d-43c4-bc75-566233326ffd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H07_731050.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-10A TCGA-A2-A0YJ-10A-01D-A107-01 a6bcbb65-545d-43c4-bc75-566233326ffd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H07_731050.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-10A TCGA-A2-A0YJ-10A-01D-A107-01 a6bcbb65-545d-43c4-bc75-566233326ffd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H07_731050.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-10A TCGA-A2-A0YJ-10A-01D-A107-01 a6bcbb65-545d-43c4-bc75-566233326ffd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H07_731050.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-10A TCGA-A2-A0YJ-10A-01D-A107-01 a6bcbb65-545d-43c4-bc75-566233326ffd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H07_731050.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-10A TCGA-A2-A0YJ-10A-01D-A107-01 a6bcbb65-545d-43c4-bc75-566233326ffd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H07_731050.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-10A TCGA-A2-A0YJ-10A-01D-A107-01 a6bcbb65-545d-43c4-bc75-566233326ffd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H07_731050.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-10A TCGA-A2-A0YJ-10A-01D-A10G-09 0fb6d352-b236-4ecf-9d79-39d49a387277 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-10A TCGA-A2-A0YJ-10A-01D-A10G-09 0fb6d352-b236-4ecf-9d79-39d49a387277 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-10A TCGA-A2-A0YJ-10A-01D-A10G-09 0fb6d352-b236-4ecf-9d79-39d49a387277 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0YJ TCGA-A2-A0YJ-10A TCGA-A2-A0YJ-10A-01X-A10H-09 75e8a9e3-006d-4b13-9aa5-097b335fc549 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-01A TCGA-A2-A0YK-01A-22D-A106-02 7e63941b-d282-4dcb-8df6-c5575f51f523 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-01A TCGA-A2-A0YK-01A-22D-A107-01 8536ff4e-4027-4673-96b9-43f4f61a5376 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-01A TCGA-A2-A0YK-01A-22D-A107-01 8536ff4e-4027-4673-96b9-43f4f61a5376 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D12_731090.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-A2-A0YK TCGA-A2-A0YK-01A TCGA-A2-A0YK-01A-22D-A107-01 8536ff4e-4027-4673-96b9-43f4f61a5376 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D12_731090.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-01A TCGA-A2-A0YK-01A-22D-A107-01 8536ff4e-4027-4673-96b9-43f4f61a5376 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D12_731090.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-01A TCGA-A2-A0YK-01A-22D-A107-01 8536ff4e-4027-4673-96b9-43f4f61a5376 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D12_731090.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-01A TCGA-A2-A0YK-01A-22D-A107-01 8536ff4e-4027-4673-96b9-43f4f61a5376 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D12_731090.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-01A TCGA-A2-A0YK-01A-22D-A107-01 8536ff4e-4027-4673-96b9-43f4f61a5376 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D12_731090.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-01A TCGA-A2-A0YK-01A-22D-A107-01 8536ff4e-4027-4673-96b9-43f4f61a5376 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D12_731090.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-01A TCGA-A2-A0YK-01A-22D-A107-01 8536ff4e-4027-4673-96b9-43f4f61a5376 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D12_731090.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-01A TCGA-A2-A0YK-01A-22D-A10A-05 f23a2f4a-d5df-4589-a2e0-f0a62760d769 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-01A TCGA-A2-A0YK-01A-22D-A10A-05 f23a2f4a-d5df-4589-a2e0-f0a62760d769 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486005_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-01A TCGA-A2-A0YK-01A-22D-A10A-05 f23a2f4a-d5df-4589-a2e0-f0a62760d769 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486005_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-01A TCGA-A2-A0YK-01A-22D-A10A-05 f23a2f4a-d5df-4589-a2e0-f0a62760d769 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-A2-A0YK-01A-22D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-01A TCGA-A2-A0YK-01A-22D-A10A-05 f23a2f4a-d5df-4589-a2e0-f0a62760d769 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-A2-A0YK-01A-22D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-01A TCGA-A2-A0YK-01A-22D-A10G-09 66a38244-9e8f-4129-875f-dba4a3d63817 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-01A TCGA-A2-A0YK-01A-22D-A117-09 7c27f81e-62fb-478c-9cee-8e20db9300f2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-01A TCGA-A2-A0YK-01A-22D-A117-09 7c27f81e-62fb-478c-9cee-8e20db9300f2 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-01A TCGA-A2-A0YK-01A-22D-A117-09 7c27f81e-62fb-478c-9cee-8e20db9300f2 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-01A TCGA-A2-A0YK-01A-22R-A108-13 4e64a5ab-1631-4272-9f02-48df5ed01132 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-01A TCGA-A2-A0YK-01A-22R-A108-13 4e64a5ab-1631-4272-9f02-48df5ed01132 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0YK-01A-22R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-01A TCGA-A2-A0YK-01A-22R-A108-13 4e64a5ab-1631-4272-9f02-48df5ed01132 miRNASeq IlluminaGA_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_491205.TCGA-A2-A0YK-01A-22R-A109-07.110912_UNC13-SN749_0112_BD0DDTABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-01A TCGA-A2-A0YK-01A-22R-A109-07 ae614f7b-b310-4c60-bd50-9e02be984943 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_491228.TCGA-A2-A0YK-01A-22R-A109-07.110912_UNC13-SN749_0112_BD0DDTABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-01A TCGA-A2-A0YK-01A-22X-A10H-09 e7ce7bf9-33de-4ecc-9d3a-87085e0570b9 Complete Clinical Set bio 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1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-10A TCGA-A2-A0YK-10A-01D-A107-01 e1cd62c2-df2a-4eed-a802-2f3c997e2e4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B07_731028.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-A2-A0YK TCGA-A2-A0YK-10A TCGA-A2-A0YK-10A-01D-A107-01 e1cd62c2-df2a-4eed-a802-2f3c997e2e4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B07_731028.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-10A TCGA-A2-A0YK-10A-01D-A107-01 e1cd62c2-df2a-4eed-a802-2f3c997e2e4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B07_731028.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-10A TCGA-A2-A0YK-10A-01D-A107-01 e1cd62c2-df2a-4eed-a802-2f3c997e2e4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B07_731028.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-10A TCGA-A2-A0YK-10A-01D-A107-01 e1cd62c2-df2a-4eed-a802-2f3c997e2e4c SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-10A TCGA-A2-A0YK-10A-01D-A117-09 134d71cc-c1c7-40b7-9cc1-927b8f6f393d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0YK TCGA-A2-A0YK-10A TCGA-A2-A0YK-10A-01X-A10H-09 c09ef218-4218-4c7f-9006-c0b8a6611ca6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21D-A106-02 adad7a28-88e5-4e93-97d3-005ce8b08de8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21D-A107-01 d1740289-b374-4298-a155-88bbb5f1a87d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21D-A107-01 d1740289-b374-4298-a155-88bbb5f1a87d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G02_730922.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21D-A107-01 d1740289-b374-4298-a155-88bbb5f1a87d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G02_730922.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21D-A107-01 d1740289-b374-4298-a155-88bbb5f1a87d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G02_730922.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21D-A107-01 d1740289-b374-4298-a155-88bbb5f1a87d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G02_730922.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21D-A107-01 d1740289-b374-4298-a155-88bbb5f1a87d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G02_730922.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21D-A107-01 d1740289-b374-4298-a155-88bbb5f1a87d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G02_730922.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21D-A107-01 d1740289-b374-4298-a155-88bbb5f1a87d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G02_730922.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21D-A107-01 d1740289-b374-4298-a155-88bbb5f1a87d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G02_730922.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21D-A10A-05 4a947bb0-a90d-4640-b547-6e3b129c1fb9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21D-A10A-05 4a947bb0-a90d-4640-b547-6e3b129c1fb9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486005_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21D-A10A-05 4a947bb0-a90d-4640-b547-6e3b129c1fb9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486005_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21D-A10A-05 4a947bb0-a90d-4640-b547-6e3b129c1fb9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-A2-A0YL-01A-21D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21D-A10A-05 4a947bb0-a90d-4640-b547-6e3b129c1fb9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-A2-A0YL-01A-21D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21D-A10G-09 3cc80b41-603d-4735-85c7-71f540dc6e5c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21D-A10G-09 3cc80b41-603d-4735-85c7-71f540dc6e5c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21D-A10G-09 3cc80b41-603d-4735-85c7-71f540dc6e5c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21D-A117-09 809a2c4e-7fe7-42cc-8c2f-9db7c7eed780 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21R-A108-13 5a0a3a61-cf12-4e66-a132-6b80a98e6553 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21R-A108-13 5a0a3a61-cf12-4e66-a132-6b80a98e6553 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0YL-01A-21R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21R-A108-13 5a0a3a61-cf12-4e66-a132-6b80a98e6553 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0YL-01A-21R-A108-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21R-A109-07 32cfb4f4-1de9-4937-8cfa-dc6c37081583 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21R-A109-07 32cfb4f4-1de9-4937-8cfa-dc6c37081583 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012372_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21R-A109-07 32cfb4f4-1de9-4937-8cfa-dc6c37081583 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012372_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21R-A109-07 32cfb4f4-1de9-4937-8cfa-dc6c37081583 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012372_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21R-A109-07 32cfb4f4-1de9-4937-8cfa-dc6c37081583 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406824.TCGA-A2-A0YL-01A-21R-A109-07.110510_UNC15-SN850_0069_BC015CABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21R-A109-07 32cfb4f4-1de9-4937-8cfa-dc6c37081583 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406841.TCGA-A2-A0YL-01A-21R-A109-07.110510_UNC15-SN850_0069_BC015CABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21R-A109-07 32cfb4f4-1de9-4937-8cfa-dc6c37081583 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406910.TCGA-A2-A0YL-01A-21R-A109-07.110510_UNC15-SN850_0069_BC015CABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-01A TCGA-A2-A0YL-01A-21X-A10H-09 c9fd6836-a5e5-4550-9de5-f6a9d22ebdf0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-10A TCGA-A2-A0YL-10A-01D-A106-02 354b14f4-e889-4e9e-a0dd-c7eb1a4cb707 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-10A TCGA-A2-A0YL-10A-01D-A107-01 17518254-3f6e-42d3-887d-c92c5a4943bb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-10A TCGA-A2-A0YL-10A-01D-A107-01 17518254-3f6e-42d3-887d-c92c5a4943bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E03_731010.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-A2-A0YL TCGA-A2-A0YL-10A TCGA-A2-A0YL-10A-01D-A107-01 17518254-3f6e-42d3-887d-c92c5a4943bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E03_731010.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-10A TCGA-A2-A0YL-10A-01D-A107-01 17518254-3f6e-42d3-887d-c92c5a4943bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E03_731010.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-10A TCGA-A2-A0YL-10A-01D-A107-01 17518254-3f6e-42d3-887d-c92c5a4943bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E03_731010.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-10A TCGA-A2-A0YL-10A-01D-A107-01 17518254-3f6e-42d3-887d-c92c5a4943bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E03_731010.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-10A TCGA-A2-A0YL-10A-01D-A107-01 17518254-3f6e-42d3-887d-c92c5a4943bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E03_731010.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-10A TCGA-A2-A0YL-10A-01D-A107-01 17518254-3f6e-42d3-887d-c92c5a4943bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E03_731010.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-10A TCGA-A2-A0YL-10A-01D-A107-01 17518254-3f6e-42d3-887d-c92c5a4943bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E03_731010.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-10A TCGA-A2-A0YL-10A-01D-A10G-09 f570e581-5f15-4113-93d7-a4bbeb7ec394 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-10A TCGA-A2-A0YL-10A-01D-A10G-09 f570e581-5f15-4113-93d7-a4bbeb7ec394 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-10A TCGA-A2-A0YL-10A-01D-A10G-09 f570e581-5f15-4113-93d7-a4bbeb7ec394 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-10A TCGA-A2-A0YL-10A-01D-A117-09 3b7d4a6d-e1fc-4c4b-ac1d-4124b2a70ca6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YL TCGA-A2-A0YL-10A TCGA-A2-A0YL-10A-01X-A10H-09 e26c2b1f-b355-4d62-88f4-12a53b9669df Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11D-A106-02 51202bf1-feea-4ec1-9357-cc6d22f682ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11D-A107-01 356ec0ad-a065-44db-8a4d-218efff4c3b4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11D-A107-01 356ec0ad-a065-44db-8a4d-218efff4c3b4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G06_730916.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11D-A107-01 356ec0ad-a065-44db-8a4d-218efff4c3b4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G06_730916.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11D-A107-01 356ec0ad-a065-44db-8a4d-218efff4c3b4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G06_730916.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11D-A107-01 356ec0ad-a065-44db-8a4d-218efff4c3b4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G06_730916.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11D-A107-01 356ec0ad-a065-44db-8a4d-218efff4c3b4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G06_730916.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11D-A107-01 356ec0ad-a065-44db-8a4d-218efff4c3b4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G06_730916.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11D-A107-01 356ec0ad-a065-44db-8a4d-218efff4c3b4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G06_730916.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11D-A107-01 356ec0ad-a065-44db-8a4d-218efff4c3b4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G06_730916.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11D-A10A-05 89ced2e4-5731-466f-b54a-5316e86b3dab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11D-A10A-05 89ced2e4-5731-466f-b54a-5316e86b3dab DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486005_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11D-A10A-05 89ced2e4-5731-466f-b54a-5316e86b3dab DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486005_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11D-A10A-05 89ced2e4-5731-466f-b54a-5316e86b3dab DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-A2-A0YM-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11D-A10A-05 89ced2e4-5731-466f-b54a-5316e86b3dab DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-A2-A0YM-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11D-A10G-09 1125ec93-6d24-4537-9c89-526f2d6b2299 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11D-A10G-09 1125ec93-6d24-4537-9c89-526f2d6b2299 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11D-A10G-09 1125ec93-6d24-4537-9c89-526f2d6b2299 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11R-A108-13 7cefa981-c318-4ae6-81a5-9d98d969a40f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11R-A108-13 7cefa981-c318-4ae6-81a5-9d98d969a40f miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0YM-01A-11R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11R-A108-13 7cefa981-c318-4ae6-81a5-9d98d969a40f miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0YM-01A-11R-A108-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11R-A109-07 1e59ea3f-36fa-4860-8c28-87b4b09075ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11R-A109-07 1e59ea3f-36fa-4860-8c28-87b4b09075ec Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012377_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11R-A109-07 1e59ea3f-36fa-4860-8c28-87b4b09075ec Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012377_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11R-A109-07 1e59ea3f-36fa-4860-8c28-87b4b09075ec Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012377_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11R-A109-07 1e59ea3f-36fa-4860-8c28-87b4b09075ec RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407818.TCGA-A2-A0YM-01A-11R-A109-07.110510_UNC15-SN850_0069_BC015CABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11R-A109-07 1e59ea3f-36fa-4860-8c28-87b4b09075ec RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407821.TCGA-A2-A0YM-01A-11R-A109-07.110510_UNC15-SN850_0069_BC015CABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11R-A109-07 1e59ea3f-36fa-4860-8c28-87b4b09075ec RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407865.TCGA-A2-A0YM-01A-11R-A109-07.110510_UNC15-SN850_0069_BC015CABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-01A TCGA-A2-A0YM-01A-11X-A10H-09 48b2fe9d-82a3-4e5b-bcbf-1cb528d6b9cd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-10A TCGA-A2-A0YM-10A-01D-A106-02 a9e5aa75-b555-48f0-82f3-bdb47bf9514e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-10A TCGA-A2-A0YM-10A-01D-A107-01 88adf504-1f0b-4ebc-a0f8-e283f0bb1807 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-10A TCGA-A2-A0YM-10A-01D-A107-01 88adf504-1f0b-4ebc-a0f8-e283f0bb1807 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C02_730904.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-A2-A0YM TCGA-A2-A0YM-10A TCGA-A2-A0YM-10A-01D-A107-01 88adf504-1f0b-4ebc-a0f8-e283f0bb1807 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C02_730904.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-10A TCGA-A2-A0YM-10A-01D-A107-01 88adf504-1f0b-4ebc-a0f8-e283f0bb1807 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C02_730904.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-10A TCGA-A2-A0YM-10A-01D-A107-01 88adf504-1f0b-4ebc-a0f8-e283f0bb1807 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C02_730904.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-10A TCGA-A2-A0YM-10A-01D-A107-01 88adf504-1f0b-4ebc-a0f8-e283f0bb1807 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C02_730904.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-10A TCGA-A2-A0YM-10A-01D-A107-01 88adf504-1f0b-4ebc-a0f8-e283f0bb1807 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C02_730904.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-10A TCGA-A2-A0YM-10A-01D-A107-01 88adf504-1f0b-4ebc-a0f8-e283f0bb1807 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C02_730904.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-10A TCGA-A2-A0YM-10A-01D-A107-01 88adf504-1f0b-4ebc-a0f8-e283f0bb1807 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C02_730904.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-10A TCGA-A2-A0YM-10A-01D-A10G-09 1b5a4092-b33a-442c-808c-abbaf60d033c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-10A TCGA-A2-A0YM-10A-01D-A10G-09 1b5a4092-b33a-442c-808c-abbaf60d033c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-10A TCGA-A2-A0YM-10A-01D-A10G-09 1b5a4092-b33a-442c-808c-abbaf60d033c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-A2-A0YM TCGA-A2-A0YM-10A TCGA-A2-A0YM-10A-01X-A10H-09 b430d533-affe-4f83-878b-c07b34e658c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11D-A106-02 a2471f41-51ed-4bb7-afc4-58528bc472cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11D-A107-01 0b6fed27-b3fc-4078-a9d3-e766d718c19b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11D-A107-01 0b6fed27-b3fc-4078-a9d3-e766d718c19b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G11_731040.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11D-A107-01 0b6fed27-b3fc-4078-a9d3-e766d718c19b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G11_731040.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11D-A107-01 0b6fed27-b3fc-4078-a9d3-e766d718c19b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G11_731040.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11D-A107-01 0b6fed27-b3fc-4078-a9d3-e766d718c19b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G11_731040.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11D-A107-01 0b6fed27-b3fc-4078-a9d3-e766d718c19b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G11_731040.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11D-A107-01 0b6fed27-b3fc-4078-a9d3-e766d718c19b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G11_731040.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11D-A107-01 0b6fed27-b3fc-4078-a9d3-e766d718c19b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G11_731040.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11D-A107-01 0b6fed27-b3fc-4078-a9d3-e766d718c19b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G11_731040.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11D-A10A-05 dda01c99-760c-4f05-9187-d519ceb09b65 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11D-A10A-05 dda01c99-760c-4f05-9187-d519ceb09b65 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486029_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11D-A10A-05 dda01c99-760c-4f05-9187-d519ceb09b65 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486029_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11D-A10A-05 dda01c99-760c-4f05-9187-d519ceb09b65 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-A2-A0YT-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11D-A10A-05 dda01c99-760c-4f05-9187-d519ceb09b65 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-A2-A0YT-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11D-A10G-09 827c6a2f-fb1b-4845-9cb1-11013a16da3f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11D-A10G-09 827c6a2f-fb1b-4845-9cb1-11013a16da3f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11R-A108-13 e3d22805-43ee-4cde-876d-d24c00c7c2e9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11R-A108-13 e3d22805-43ee-4cde-876d-d24c00c7c2e9 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0YT-01A-11R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11R-A108-13 e3d22805-43ee-4cde-876d-d24c00c7c2e9 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A2-A0YT-01A-11R-A108-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11R-A109-07 451099b0-f348-4aec-bf9f-2982601f013c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11R-A109-07 451099b0-f348-4aec-bf9f-2982601f013c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012391_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11R-A109-07 451099b0-f348-4aec-bf9f-2982601f013c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012391_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11R-A109-07 451099b0-f348-4aec-bf9f-2982601f013c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012391_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11R-A109-07 451099b0-f348-4aec-bf9f-2982601f013c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_466668.TCGA-A2-A0YT-01A-11R-A109-07.110506_UNC9-SN296_0179_AB0BEFABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11R-A109-07 451099b0-f348-4aec-bf9f-2982601f013c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_466701.TCGA-A2-A0YT-01A-11R-A109-07.110506_UNC9-SN296_0179_AB0BEFABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11R-A109-07 451099b0-f348-4aec-bf9f-2982601f013c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_466765.TCGA-A2-A0YT-01A-11R-A109-07.110506_UNC9-SN296_0179_AB0BEFABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-01A TCGA-A2-A0YT-01A-11X-A10H-09 ce71b048-c099-49c6-96dd-c8e0c0ee92a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-10A TCGA-A2-A0YT-10A-01D-A106-02 d676aae7-aea5-420d-9d67-f32234627c91 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-10A TCGA-A2-A0YT-10A-01D-A107-01 52c7bdcf-249c-4237-a619-b2cf5ea43501 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-10A TCGA-A2-A0YT-10A-01D-A107-01 52c7bdcf-249c-4237-a619-b2cf5ea43501 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G12_731086.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-10A TCGA-A2-A0YT-10A-01D-A107-01 52c7bdcf-249c-4237-a619-b2cf5ea43501 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G12_731086.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-10A TCGA-A2-A0YT-10A-01D-A107-01 52c7bdcf-249c-4237-a619-b2cf5ea43501 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G12_731086.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-10A TCGA-A2-A0YT-10A-01D-A107-01 52c7bdcf-249c-4237-a619-b2cf5ea43501 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G12_731086.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-10A TCGA-A2-A0YT-10A-01D-A107-01 52c7bdcf-249c-4237-a619-b2cf5ea43501 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G12_731086.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-10A TCGA-A2-A0YT-10A-01D-A107-01 52c7bdcf-249c-4237-a619-b2cf5ea43501 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G12_731086.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-10A TCGA-A2-A0YT-10A-01D-A107-01 52c7bdcf-249c-4237-a619-b2cf5ea43501 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G12_731086.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-10A TCGA-A2-A0YT-10A-01D-A107-01 52c7bdcf-249c-4237-a619-b2cf5ea43501 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G12_731086.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-10A TCGA-A2-A0YT-10A-01D-A10G-09 75eb756e-e38e-4f94-867e-b4eabdf71c79 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-10A TCGA-A2-A0YT-10A-01D-A10G-09 75eb756e-e38e-4f94-867e-b4eabdf71c79 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-10A TCGA-A2-A0YT-10A-01D-A117-09 988c9b67-a518-4074-8b4b-ce3fdf721f66 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A0YT TCGA-A2-A0YT-10A TCGA-A2-A0YT-10A-01X-A10H-09 9fa48673-e00a-4b32-9f1d-370f5e545f20 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-A2-A0YT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM Notification Neoadjuvant therapy / Prior malignancy Subject is positive for neoadjuvant therapy. / from Jay Bowen/NWCH / Case had Prior malignancy TCGA-A2-A1FV TCGA-A2-A1FV-01A TCGA-A2-A1FV-01A-11D-A13I-02 2d7a0bc0-b1b8-4794-a6e4-f9abf518a0ab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1FV TCGA-A2-A1FV-01A TCGA-A2-A1FV-01A-11D-A13J-01 9deea0fe-12ed-4cd6-8d76-11d857b03607 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1FV TCGA-A2-A1FV-01A TCGA-A2-A1FV-01A-11D-A13J-01 9deea0fe-12ed-4cd6-8d76-11d857b03607 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D06_771872.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-A2-A1FV TCGA-A2-A1FV-01A TCGA-A2-A1FV-01A-11D-A13J-01 9deea0fe-12ed-4cd6-8d76-11d857b03607 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D06_771872.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1FV TCGA-A2-A1FV-01A TCGA-A2-A1FV-01A-11D-A13J-01 9deea0fe-12ed-4cd6-8d76-11d857b03607 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D06_771872.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1FV TCGA-A2-A1FV-01A TCGA-A2-A1FV-01A-11D-A13J-01 9deea0fe-12ed-4cd6-8d76-11d857b03607 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D06_771872.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1FV TCGA-A2-A1FV-01A TCGA-A2-A1FV-01A-11D-A13J-01 9deea0fe-12ed-4cd6-8d76-11d857b03607 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D06_771872.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1FV TCGA-A2-A1FV-01A TCGA-A2-A1FV-01A-11D-A13J-01 9deea0fe-12ed-4cd6-8d76-11d857b03607 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D06_771872.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1FV TCGA-A2-A1FV-01A TCGA-A2-A1FV-01A-11D-A13J-01 9deea0fe-12ed-4cd6-8d76-11d857b03607 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D06_771872.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1FV TCGA-A2-A1FV-01A TCGA-A2-A1FV-01A-11D-A13J-01 9deea0fe-12ed-4cd6-8d76-11d857b03607 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D06_771872.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-A2-A1FV TCGA-A2-A1FV-01A TCGA-A2-A1FV-01A-11D-A13K-05 17f4899f-f207-422b-b351-7077d6e44856 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1FV TCGA-A2-A1FV-01A TCGA-A2-A1FV-01A-11D-A13K-05 17f4899f-f207-422b-b351-7077d6e44856 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818135_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-A2-A1FV TCGA-A2-A1FV-01A TCGA-A2-A1FV-01A-11D-A13K-05 17f4899f-f207-422b-b351-7077d6e44856 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818135_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-A2-A1FV TCGA-A2-A1FV-01A TCGA-A2-A1FV-01A-11D-A13K-05 17f4899f-f207-422b-b351-7077d6e44856 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-A2-A1FV-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-A2-A1FV TCGA-A2-A1FV-01A TCGA-A2-A1FV-01A-11D-A13K-05 17f4899f-f207-422b-b351-7077d6e44856 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-A2-A1FV-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-A2-A1FV TCGA-A2-A1FV-01A TCGA-A2-A1FV-01A-11D-A13L-09 51b7064c-d9fc-4312-ad25-b014ef81c821 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1FV TCGA-A2-A1FV-01A TCGA-A2-A1FV-01A-11R-A13P-13 4913684d-1931-4361-b483-3664d865df40 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1FV TCGA-A2-A1FV-01A TCGA-A2-A1FV-01A-11R-A13P-13 4913684d-1931-4361-b483-3664d865df40 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A1FV-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A1FV TCGA-A2-A1FV-01A TCGA-A2-A1FV-01A-11R-A13P-13 4913684d-1931-4361-b483-3664d865df40 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A1FV-01A-11R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A1FV TCGA-A2-A1FV-01A TCGA-A2-A1FV-01A-11R-A13Q-07 ee12f85b-64f8-4052-9477-392c4bd99257 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1FV TCGA-A2-A1FV-01A TCGA-A2-A1FV-01A-11R-A13Q-07 ee12f85b-64f8-4052-9477-392c4bd99257 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_402063.TCGA-A2-A1FV-01A-11R-A13Q-07.110729_UNC15-SN850_0101_AD0DW6ABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A1FV TCGA-A2-A1FV-01A TCGA-A2-A1FV-01A-11R-A13Q-07 ee12f85b-64f8-4052-9477-392c4bd99257 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_402092.TCGA-A2-A1FV-01A-11R-A13Q-07.110729_UNC15-SN850_0101_AD0DW6ABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A1FV TCGA-A2-A1FV-01A TCGA-A2-A1FV-01A-11R-A13Q-07 ee12f85b-64f8-4052-9477-392c4bd99257 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_402095.TCGA-A2-A1FV-01A-11R-A13Q-07.110729_UNC15-SN850_0101_AD0DW6ABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A1FV TCGA-A2-A1FV-01A TCGA-A2-A1FV-01A-11W-A14Q-09 04180b0c-56b7-4cf1-80e3-78c3000eea2f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1FV TCGA-A2-A1FV-10A TCGA-A2-A1FV-10A-01D-A13M-02 1c96ebed-bfd0-46ba-8a66-c0eb8eec1e68 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1FV TCGA-A2-A1FV-10A TCGA-A2-A1FV-10A-01D-A13N-01 0b8bb4e7-981e-47d7-b04d-80dbaabcc49b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1FV TCGA-A2-A1FV-10A TCGA-A2-A1FV-10A-01D-A13N-01 0b8bb4e7-981e-47d7-b04d-80dbaabcc49b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B01_771922.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-A2-A1FV TCGA-A2-A1FV-10A TCGA-A2-A1FV-10A-01D-A13N-01 0b8bb4e7-981e-47d7-b04d-80dbaabcc49b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B01_771922.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1FV TCGA-A2-A1FV-10A TCGA-A2-A1FV-10A-01D-A13N-01 0b8bb4e7-981e-47d7-b04d-80dbaabcc49b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B01_771922.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1FV TCGA-A2-A1FV-10A TCGA-A2-A1FV-10A-01D-A13N-01 0b8bb4e7-981e-47d7-b04d-80dbaabcc49b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B01_771922.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1FV TCGA-A2-A1FV-10A TCGA-A2-A1FV-10A-01D-A13N-01 0b8bb4e7-981e-47d7-b04d-80dbaabcc49b SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B01_771922.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1FV TCGA-A2-A1FV-10A TCGA-A2-A1FV-10A-01D-A13N-01 0b8bb4e7-981e-47d7-b04d-80dbaabcc49b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B01_771922.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-A2-A1FV TCGA-A2-A1FV-10A TCGA-A2-A1FV-10A-01D-A13O-09 f2b83096-9f51-4664-b365-747eb146a4d7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1FV TCGA-A2-A1FV-10A TCGA-A2-A1FV-10A-01W-A14R-09 3de7dfd2-1261-4e83-8d21-3606e1f58bcc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1FW TCGA-A2-A1FW-01A TCGA-A2-A1FW-01A-11D-A13I-02 1d634449-7211-4a67-8967-724ea50e7da7 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D09_771856.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-A2-A1FW TCGA-A2-A1FW-01A TCGA-A2-A1FW-01A-11D-A13J-01 b8ee56ee-5cac-45d1-af7d-d89eb8fa3360 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D09_771856.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1FW TCGA-A2-A1FW-01A TCGA-A2-A1FW-01A-11D-A13J-01 b8ee56ee-5cac-45d1-af7d-d89eb8fa3360 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D09_771856.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1FW TCGA-A2-A1FW-01A TCGA-A2-A1FW-01A-11D-A13J-01 b8ee56ee-5cac-45d1-af7d-d89eb8fa3360 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D09_771856.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1FW TCGA-A2-A1FW-01A TCGA-A2-A1FW-01A-11D-A13J-01 b8ee56ee-5cac-45d1-af7d-d89eb8fa3360 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D09_771856.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1FW TCGA-A2-A1FW-01A TCGA-A2-A1FW-01A-11D-A13J-01 b8ee56ee-5cac-45d1-af7d-d89eb8fa3360 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D09_771856.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1FW TCGA-A2-A1FW-01A TCGA-A2-A1FW-01A-11D-A13J-01 b8ee56ee-5cac-45d1-af7d-d89eb8fa3360 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D09_771856.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1FW TCGA-A2-A1FW-01A TCGA-A2-A1FW-01A-11D-A13J-01 b8ee56ee-5cac-45d1-af7d-d89eb8fa3360 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D09_771856.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-A2-A1FW TCGA-A2-A1FW-01A TCGA-A2-A1FW-01A-11D-A13K-05 04b18fcc-8812-408f-afeb-1cc23e427e24 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1FW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1FW TCGA-A2-A1FW-01A TCGA-A2-A1FW-01A-11D-A13K-05 04b18fcc-8812-408f-afeb-1cc23e427e24 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818132_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-A2-A1FW TCGA-A2-A1FW-01A TCGA-A2-A1FW-01A-11D-A13K-05 04b18fcc-8812-408f-afeb-1cc23e427e24 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-A2-A1FW-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-A2-A1FW TCGA-A2-A1FW-01A TCGA-A2-A1FW-01A-11D-A13L-09 6ccdb42e-1ad1-4175-b83a-a24b019dc640 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1FW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1FW TCGA-A2-A1FW-01A TCGA-A2-A1FW-01A-11R-A13P-13 6e7d9699-c283-4641-befb-79e0dbe45908 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1FW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1FW TCGA-A2-A1FW-01A TCGA-A2-A1FW-01A-11R-A13P-13 6e7d9699-c283-4641-befb-79e0dbe45908 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A1FW-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A1FW TCGA-A2-A1FW-01A TCGA-A2-A1FW-01A-11R-A13P-13 6e7d9699-c283-4641-befb-79e0dbe45908 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C04_772016.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-A2-A1G0 TCGA-A2-A1G0-01A TCGA-A2-A1G0-01A-11D-A13K-05 9e61ef7e-e35d-453b-b66a-f58f36a11cda Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1G0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1G0 TCGA-A2-A1G0-01A TCGA-A2-A1G0-01A-11D-A13K-05 9e61ef7e-e35d-453b-b66a-f58f36a11cda DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818108_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-A2-A1G0 TCGA-A2-A1G0-01A TCGA-A2-A1G0-01A-11D-A13K-05 9e61ef7e-e35d-453b-b66a-f58f36a11cda DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818108_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-A2-A1G0 TCGA-A2-A1G0-01A TCGA-A2-A1G0-01A-11D-A13K-05 9e61ef7e-e35d-453b-b66a-f58f36a11cda DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-A2-A1G0-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-A2-A1G0 TCGA-A2-A1G0-01A TCGA-A2-A1G0-01A-11D-A13K-05 9e61ef7e-e35d-453b-b66a-f58f36a11cda DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-A2-A1G0-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-A2-A1G0 TCGA-A2-A1G0-01A TCGA-A2-A1G0-01A-11D-A13L-09 f7eacf95-478d-4d81-a5e3-f5a8938c83ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1G0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1G0 TCGA-A2-A1G0-01A TCGA-A2-A1G0-01A-11R-A13P-13 dfdd65b8-fc56-46e2-9698-9bcfbb9033e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1G0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1G0 TCGA-A2-A1G0-01A TCGA-A2-A1G0-01A-11R-A13P-13 dfdd65b8-fc56-46e2-9698-9bcfbb9033e4 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_450054.TCGA-A2-A1G0-01A-11R-A13Q-07.110805_UNC11-SN627_0134_AC042TABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A1G0 TCGA-A2-A1G0-01A TCGA-A2-A1G0-01A-11R-A13Q-07 753e77c2-6175-49d8-afd4-3a87d1dc2404 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_450105.TCGA-A2-A1G0-01A-11R-A13Q-07.110805_UNC11-SN627_0134_AC042TABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A1G0 TCGA-A2-A1G0-01A TCGA-A2-A1G0-01A-11W-A14Q-09 1842b0a2-863c-48a3-84c1-3ed2a8d19b64 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1G0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1G0 TCGA-A2-A1G0-10A TCGA-A2-A1G0-10A-01D-A13M-02 fbc06723-0064-4039-b178-59c394b5dd68 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1G0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1G0 TCGA-A2-A1G0-10A TCGA-A2-A1G0-10A-01D-A13N-01 7ddb3b11-95d7-4db0-9baa-960f1b661fae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1G0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1G0 TCGA-A2-A1G0-10A TCGA-A2-A1G0-10A-01D-A13N-01 7ddb3b11-95d7-4db0-9baa-960f1b661fae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E07_771986.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-A2-A1G0 TCGA-A2-A1G0-10A TCGA-A2-A1G0-10A-01D-A13N-01 7ddb3b11-95d7-4db0-9baa-960f1b661fae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E07_771986.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1G0 TCGA-A2-A1G0-10A TCGA-A2-A1G0-10A-01D-A13N-01 7ddb3b11-95d7-4db0-9baa-960f1b661fae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E07_771986.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1G0 TCGA-A2-A1G0-10A TCGA-A2-A1G0-10A-01D-A13N-01 7ddb3b11-95d7-4db0-9baa-960f1b661fae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E07_771986.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1G0 TCGA-A2-A1G0-10A TCGA-A2-A1G0-10A-01D-A13N-01 7ddb3b11-95d7-4db0-9baa-960f1b661fae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E07_771986.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1G0 TCGA-A2-A1G0-10A TCGA-A2-A1G0-10A-01D-A13N-01 7ddb3b11-95d7-4db0-9baa-960f1b661fae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E07_771986.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1G0 TCGA-A2-A1G0-10A TCGA-A2-A1G0-10A-01D-A13N-01 7ddb3b11-95d7-4db0-9baa-960f1b661fae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E07_771986.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1G0 TCGA-A2-A1G0-10A TCGA-A2-A1G0-10A-01D-A13N-01 7ddb3b11-95d7-4db0-9baa-960f1b661fae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E07_771986.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-A2-A1G0 TCGA-A2-A1G0-10A TCGA-A2-A1G0-10A-01D-A13O-09 eb1176bf-f7d8-4fdf-ae03-a998c8bdc047 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1G0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1G0 TCGA-A2-A1G0-10A TCGA-A2-A1G0-10A-01W-A14R-09 83dadcad-2c9c-4366-ba08-0ac74f4671a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1G0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1G1 TCGA-A2-A1G1-01A TCGA-A2-A1G1-01A-21D-A13I-02 c4a83be3-990a-4c51-b46c-d5f549e92ea3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1G1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1G1 TCGA-A2-A1G1-01A TCGA-A2-A1G1-01A-21D-A13J-01 b71535be-881b-4ea5-888a-1f2afbdec4d1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1G1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1G1 TCGA-A2-A1G1-01A TCGA-A2-A1G1-01A-21D-A13J-01 b71535be-881b-4ea5-888a-1f2afbdec4d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A02_771848.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-A2-A1G1 TCGA-A2-A1G1-01A TCGA-A2-A1G1-01A-21D-A13J-01 b71535be-881b-4ea5-888a-1f2afbdec4d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A02_771848.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1G1 TCGA-A2-A1G1-01A TCGA-A2-A1G1-01A-21D-A13J-01 b71535be-881b-4ea5-888a-1f2afbdec4d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A02_771848.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1G1 TCGA-A2-A1G1-01A TCGA-A2-A1G1-01A-21D-A13J-01 b71535be-881b-4ea5-888a-1f2afbdec4d1 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A02_771848.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-A2-A1G1 TCGA-A2-A1G1-01A TCGA-A2-A1G1-01A-21D-A13K-05 96bbb56c-cdc2-4079-8a27-76b5e932ed89 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1G1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1G1 TCGA-A2-A1G1-01A TCGA-A2-A1G1-01A-21D-A13K-05 96bbb56c-cdc2-4079-8a27-76b5e932ed89 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1G1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1G1 TCGA-A2-A1G1-01A TCGA-A2-A1G1-01A-21R-A13P-13 aa7fbf83-972b-428a-a180-7ff884772cd9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1G1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1G1 TCGA-A2-A1G1-01A TCGA-A2-A1G1-01A-21R-A13P-13 aa7fbf83-972b-428a-a180-7ff884772cd9 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1G4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1G4 TCGA-A2-A1G4-01A TCGA-A2-A1G4-01A-11R-A13P-13 e8cbf7d1-eaec-4dd1-ab57-a9a18ab9a9d4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1G4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1G4 TCGA-A2-A1G4-01A TCGA-A2-A1G4-01A-11R-A13P-13 e8cbf7d1-eaec-4dd1-ab57-a9a18ab9a9d4 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D02_771962.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-A2-A1G4 TCGA-A2-A1G4-10A TCGA-A2-A1G4-10A-01D-A13O-09 9deca75c-8b1a-47e1-a301-9345c7ac9269 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1G4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1G4 TCGA-A2-A1G4-10A TCGA-A2-A1G4-10A-01W-A14R-09 e8a9a187-4df7-41af-b0aa-389e4319b9ab Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A03_771984.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-A2-A1G6 TCGA-A2-A1G6-01A TCGA-A2-A1G6-01A-11D-A13K-05 c843af52-1696-45ad-9f5d-dc573ffdb6b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1G6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1G6 TCGA-A2-A1G6-01A TCGA-A2-A1G6-01A-11D-A13K-05 c843af52-1696-45ad-9f5d-dc573ffdb6b9 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1G6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1G6 TCGA-A2-A1G6-01A TCGA-A2-A1G6-01A-11R-A13P-13 82fc6cf1-e4c2-407e-9136-a715c0089da2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1G6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1G6 TCGA-A2-A1G6-01A TCGA-A2-A1G6-01A-11R-A13P-13 82fc6cf1-e4c2-407e-9136-a715c0089da2 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1G6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1G6 TCGA-A2-A1G6-10A TCGA-A2-A1G6-10A-01D-A13N-01 4ba66979-e5d1-405c-9b0a-5fe421e736f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1G6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1G6 TCGA-A2-A1G6-10A TCGA-A2-A1G6-10A-01D-A13N-01 4ba66979-e5d1-405c-9b0a-5fe421e736f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C11_771982.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-A2-A1G6 TCGA-A2-A1G6-10A TCGA-A2-A1G6-10A-01D-A13N-01 4ba66979-e5d1-405c-9b0a-5fe421e736f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C11_771982.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1G6 TCGA-A2-A1G6-10A TCGA-A2-A1G6-10A-01D-A13N-01 4ba66979-e5d1-405c-9b0a-5fe421e736f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C11_771982.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1G6 TCGA-A2-A1G6-10A TCGA-A2-A1G6-10A-01D-A13N-01 4ba66979-e5d1-405c-9b0a-5fe421e736f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C11_771982.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1G6 TCGA-A2-A1G6-10A TCGA-A2-A1G6-10A-01D-A13N-01 4ba66979-e5d1-405c-9b0a-5fe421e736f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C11_771982.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1G6 TCGA-A2-A1G6-10A TCGA-A2-A1G6-10A-01D-A13N-01 4ba66979-e5d1-405c-9b0a-5fe421e736f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C11_771982.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1G6 TCGA-A2-A1G6-10A TCGA-A2-A1G6-10A-01D-A13N-01 4ba66979-e5d1-405c-9b0a-5fe421e736f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C11_771982.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A2-A1G6 TCGA-A2-A1G6-10A TCGA-A2-A1G6-10A-01D-A13N-01 4ba66979-e5d1-405c-9b0a-5fe421e736f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C11_771982.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-A2-A1G6 TCGA-A2-A1G6-10A TCGA-A2-A1G6-10A-01D-A13O-09 af61b79f-695b-4de6-a0cc-ef58346f5170 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1G6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A1G6 TCGA-A2-A1G6-10A TCGA-A2-A1G6-10A-01W-A14R-09 d82b7e11-ace4-4af7-b946-68046da795a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A2-A1G6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A2-A259 TCGA-A2-A259-01A TCGA-A2-A259-01A-11D-A16B-02 28944122-0d0c-41d5-80a1-446322cd55fe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-A2-A259.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-A2-A259 TCGA-A2-A259-01A TCGA-A2-A259-01A-11D-A16C-01 ec4242c5-4c16-43d6-9fe3-0fc2766928a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-A2-A259.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-A2-A259 TCGA-A2-A259-01A TCGA-A2-A259-01A-11D-A16C-01 ec4242c5-4c16-43d6-9fe3-0fc2766928a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D04_799870.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-A2-A259 TCGA-A2-A259-01A TCGA-A2-A259-01A-11D-A16C-01 ec4242c5-4c16-43d6-9fe3-0fc2766928a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D04_799870.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A259 TCGA-A2-A259-01A TCGA-A2-A259-01A-11D-A16C-01 ec4242c5-4c16-43d6-9fe3-0fc2766928a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D04_799870.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A259 TCGA-A2-A259-01A TCGA-A2-A259-01A-11D-A16C-01 ec4242c5-4c16-43d6-9fe3-0fc2766928a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D04_799870.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A259 TCGA-A2-A259-01A TCGA-A2-A259-01A-11D-A16C-01 ec4242c5-4c16-43d6-9fe3-0fc2766928a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D04_799870.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A259 TCGA-A2-A259-01A TCGA-A2-A259-01A-11D-A16C-01 ec4242c5-4c16-43d6-9fe3-0fc2766928a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D04_799870.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A259 TCGA-A2-A259-01A TCGA-A2-A259-01A-11D-A16C-01 ec4242c5-4c16-43d6-9fe3-0fc2766928a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D04_799870.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A259 TCGA-A2-A259-01A TCGA-A2-A259-01A-11D-A16C-01 ec4242c5-4c16-43d6-9fe3-0fc2766928a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D04_799870.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-A2-A259 TCGA-A2-A259-01A TCGA-A2-A259-01A-11D-A16D-09 93febb0a-587c-47f2-9a59-117f7aa475c5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-A2-A259.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-A2-A259 TCGA-A2-A259-01A TCGA-A2-A259-01A-11D-A16G-05 82fe055d-8392-4fb8-86e0-af6f158f7ee5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-A2-A259.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-A2-A259 TCGA-A2-A259-01A TCGA-A2-A259-01A-11D-A16G-05 82fe055d-8392-4fb8-86e0-af6f158f7ee5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009059_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-A2-A259 TCGA-A2-A259-01A TCGA-A2-A259-01A-11D-A16G-05 82fe055d-8392-4fb8-86e0-af6f158f7ee5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009059_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-A2-A259 TCGA-A2-A259-01A TCGA-A2-A259-01A-11D-A16G-05 82fe055d-8392-4fb8-86e0-af6f158f7ee5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-2.TCGA-A2-A259-01A-11D-A16G-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0 147 07-NOV-11 05.10.40.874000000 PM TCGA-A2-A259 TCGA-A2-A259-01A TCGA-A2-A259-01A-11D-A16G-05 82fe055d-8392-4fb8-86e0-af6f158f7ee5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-3.TCGA-A2-A259-01A-11D-A16G-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0 147 07-NOV-11 05.48.07.389000000 PM TCGA-A2-A259 TCGA-A2-A259-01A TCGA-A2-A259-01A-11R-A16E-13 c403161a-5ba8-4aa8-98ea-d73f613faf5e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-A2-A259.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-A2-A259 TCGA-A2-A259-01A TCGA-A2-A259-01A-11R-A16E-13 c403161a-5ba8-4aa8-98ea-d73f613faf5e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A259-01A-11R-A16E-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A259 TCGA-A2-A259-01A TCGA-A2-A259-01A-11R-A16E-13 c403161a-5ba8-4aa8-98ea-d73f613faf5e miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_560191.TCGA-A2-A259-01A-11R-A16F-07.110930_UNC12-SN629_0146_BB01KPABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A259 TCGA-A2-A259-01A TCGA-A2-A259-01A-11R-A16F-07 7157ccb4-b4f6-41ba-9f9c-da862b749a57 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_560193.TCGA-A2-A259-01A-11R-A16F-07.110930_UNC12-SN629_0146_BB01KPABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A259 TCGA-A2-A259-01A TCGA-A2-A259-01A-11R-A16F-07 7157ccb4-b4f6-41ba-9f9c-da862b749a57 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_560213.TCGA-A2-A259-01A-11R-A16F-07.110930_UNC12-SN629_0146_BB01KPABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A259 TCGA-A2-A259-01A TCGA-A2-A259-01A-11W-A189-09 91c00016-de04-4787-ac68-876c94c8913b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-A2-A259.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-A2-A259 TCGA-A2-A259-10A TCGA-A2-A259-10A-01D-A16B-02 f3002315-9bf4-4c3d-ad1e-7ab58606b1d4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-A2-A259.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-A2-A259 TCGA-A2-A259-10A TCGA-A2-A259-10A-01D-A16C-01 6c23fb13-3ebe-451a-8bdf-6bff056453f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-A2-A259.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-A2-A259 TCGA-A2-A259-10A TCGA-A2-A259-10A-01D-A16C-01 6c23fb13-3ebe-451a-8bdf-6bff056453f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A05_799860.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-A2-A259 TCGA-A2-A259-10A TCGA-A2-A259-10A-01D-A16C-01 6c23fb13-3ebe-451a-8bdf-6bff056453f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A05_799860.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A259 TCGA-A2-A259-10A TCGA-A2-A259-10A-01D-A16C-01 6c23fb13-3ebe-451a-8bdf-6bff056453f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A05_799860.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A259 TCGA-A2-A259-10A TCGA-A2-A259-10A-01D-A16C-01 6c23fb13-3ebe-451a-8bdf-6bff056453f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A05_799860.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A259 TCGA-A2-A259-10A TCGA-A2-A259-10A-01D-A16C-01 6c23fb13-3ebe-451a-8bdf-6bff056453f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A05_799860.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A259 TCGA-A2-A259-10A TCGA-A2-A259-10A-01D-A16C-01 6c23fb13-3ebe-451a-8bdf-6bff056453f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A05_799860.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A259 TCGA-A2-A259-10A TCGA-A2-A259-10A-01D-A16C-01 6c23fb13-3ebe-451a-8bdf-6bff056453f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A05_799860.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A259 TCGA-A2-A259-10A TCGA-A2-A259-10A-01D-A16C-01 6c23fb13-3ebe-451a-8bdf-6bff056453f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A05_799860.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-A2-A259 TCGA-A2-A259-10A TCGA-A2-A259-10A-01D-A16D-09 492d903f-0464-44a3-8984-39b13c6fbcf7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-A2-A259.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-A2-A259 TCGA-A2-A259-10A TCGA-A2-A259-10A-01D-A17G-09 30cca542-be1f-4a2f-be4c-d20f26d0f45a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-A2-A259.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-A2-A259 TCGA-A2-A259-10A TCGA-A2-A259-10A-01W-A189-09 8133fb80-2c06-4ac1-b7af-8117f2887be2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-A2-A259.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-A2-A25A TCGA-A2-A25A-01A TCGA-A2-A25A-01A-12D-A16B-02 06249b23-72a8-4311-a3dc-5b0b16642640 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-A2-A25A TCGA-A2-A25A-01A TCGA-A2-A25A-01A-12D-A16C-01 3e0fb875-1681-4fb4-a955-924eba446e9b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-A2-A25A TCGA-A2-A25A-01A TCGA-A2-A25A-01A-12D-A16C-01 3e0fb875-1681-4fb4-a955-924eba446e9b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D08_799826.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-A2-A25A TCGA-A2-A25A-01A TCGA-A2-A25A-01A-12D-A16C-01 3e0fb875-1681-4fb4-a955-924eba446e9b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D08_799826.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A25A TCGA-A2-A25A-01A TCGA-A2-A25A-01A-12D-A16C-01 3e0fb875-1681-4fb4-a955-924eba446e9b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D08_799826.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A25A TCGA-A2-A25A-01A TCGA-A2-A25A-01A-12D-A16C-01 3e0fb875-1681-4fb4-a955-924eba446e9b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D08_799826.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A25A TCGA-A2-A25A-01A TCGA-A2-A25A-01A-12D-A16C-01 3e0fb875-1681-4fb4-a955-924eba446e9b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D08_799826.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A25A TCGA-A2-A25A-01A TCGA-A2-A25A-01A-12D-A16C-01 3e0fb875-1681-4fb4-a955-924eba446e9b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D08_799826.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A25A TCGA-A2-A25A-01A TCGA-A2-A25A-01A-12D-A16C-01 3e0fb875-1681-4fb4-a955-924eba446e9b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D08_799826.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A25A TCGA-A2-A25A-01A TCGA-A2-A25A-01A-12D-A16C-01 3e0fb875-1681-4fb4-a955-924eba446e9b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D08_799826.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-A2-A25A TCGA-A2-A25A-01A TCGA-A2-A25A-01A-12D-A16D-09 5739a7e1-7fa3-434c-b1c3-c0a9e570c858 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-A2-A25A TCGA-A2-A25A-01A TCGA-A2-A25A-01A-12D-A16G-05 f21ab2cb-a335-4670-99ed-8144bf1de20f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-A2-A25A TCGA-A2-A25A-01A TCGA-A2-A25A-01A-12D-A16G-05 f21ab2cb-a335-4670-99ed-8144bf1de20f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009059_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-A2-A25A TCGA-A2-A25A-01A TCGA-A2-A25A-01A-12D-A16G-05 f21ab2cb-a335-4670-99ed-8144bf1de20f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009059_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-A2-A25A TCGA-A2-A25A-01A TCGA-A2-A25A-01A-12D-A16G-05 f21ab2cb-a335-4670-99ed-8144bf1de20f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-2.TCGA-A2-A25A-01A-12D-A16G-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0 147 07-NOV-11 05.10.40.874000000 PM TCGA-A2-A25A TCGA-A2-A25A-01A TCGA-A2-A25A-01A-12D-A16G-05 f21ab2cb-a335-4670-99ed-8144bf1de20f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-3.TCGA-A2-A25A-01A-12D-A16G-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0 147 07-NOV-11 05.48.07.389000000 PM TCGA-A2-A25A TCGA-A2-A25A-01A TCGA-A2-A25A-01A-12R-A16E-13 fb72ab8f-ba79-43ef-a6d5-b3478411397c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-A2-A25A TCGA-A2-A25A-01A TCGA-A2-A25A-01A-12R-A16E-13 fb72ab8f-ba79-43ef-a6d5-b3478411397c miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-A2-A25A TCGA-A2-A25A-10A TCGA-A2-A25A-10A-01D-A16C-01 e408186d-cb7e-4dd0-be19-46aff6c9b8af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A07_799952.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-A2-A25A TCGA-A2-A25A-10A TCGA-A2-A25A-10A-01D-A16C-01 e408186d-cb7e-4dd0-be19-46aff6c9b8af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A07_799952.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A25A TCGA-A2-A25A-10A TCGA-A2-A25A-10A-01D-A16C-01 e408186d-cb7e-4dd0-be19-46aff6c9b8af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A07_799952.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A25A TCGA-A2-A25A-10A TCGA-A2-A25A-10A-01D-A16C-01 e408186d-cb7e-4dd0-be19-46aff6c9b8af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A07_799952.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A25A TCGA-A2-A25A-10A TCGA-A2-A25A-10A-01D-A16C-01 e408186d-cb7e-4dd0-be19-46aff6c9b8af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A07_799952.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A25A TCGA-A2-A25A-10A TCGA-A2-A25A-10A-01D-A16C-01 e408186d-cb7e-4dd0-be19-46aff6c9b8af SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A07_799952.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-A2-A25A TCGA-A2-A25A-10A TCGA-A2-A25A-10A-01D-A16D-09 ad66f1d8-3521-4acf-a50f-76c6842df466 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-A2-A25A TCGA-A2-A25A-10A TCGA-A2-A25A-10A-01W-A189-09 f11fa9b5-f81d-4924-99d4-1d9cdc6eb3ef Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F10_802458.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A2-A25B TCGA-A2-A25B-01A TCGA-A2-A25B-01A-11D-A166-01 716578b3-e202-483b-b15c-784f5a0c60f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F10_802458.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A2-A25B TCGA-A2-A25B-01A TCGA-A2-A25B-01A-11D-A166-01 716578b3-e202-483b-b15c-784f5a0c60f3 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F10_802458.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-A2-A25B TCGA-A2-A25B-01A TCGA-A2-A25B-01A-11D-A167-09 6e839eaf-1dbb-43f5-8846-c980e05540c7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A25B TCGA-A2-A25B-01A TCGA-A2-A25B-01A-11D-A16A-05 ceb1e8bc-ce5b-47dc-a1de-d34b9629a4c3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A25B TCGA-A2-A25B-01A TCGA-A2-A25B-01A-11D-A16A-05 ceb1e8bc-ce5b-47dc-a1de-d34b9629a4c3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833142_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-A2-A25B TCGA-A2-A25B-01A TCGA-A2-A25B-01A-11D-A16A-05 ceb1e8bc-ce5b-47dc-a1de-d34b9629a4c3 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-3.TCGA-A2-A25B-01A-11D-A16A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0 142 07-NOV-11 06.37.11.245000000 PM TCGA-A2-A25B TCGA-A2-A25B-01A TCGA-A2-A25B-01A-11R-A168-13 17016798-07c5-4009-815a-b3cd4c9b13d9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A25B TCGA-A2-A25B-01A TCGA-A2-A25B-01A-11R-A168-13 17016798-07c5-4009-815a-b3cd4c9b13d9 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A25B-01A-11R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A25B TCGA-A2-A25B-01A TCGA-A2-A25B-01A-11R-A168-13 17016798-07c5-4009-815a-b3cd4c9b13d9 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A25B-01A-11R-A168-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A25B TCGA-A2-A25B-01A TCGA-A2-A25B-01A-11R-A169-07 3fc1c7a8-e5ad-4a4e-89ab-ddf12aa11a3b Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A25B TCGA-A2-A25B-10A TCGA-A2-A25B-10A-01D-A165-02 7ca22a2b-0b2a-4b18-99ea-5a8890b81017 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A25B TCGA-A2-A25B-10A TCGA-A2-A25B-10A-01D-A166-01 81cd5b67-cd8b-433e-941c-6d5f6b8c1d33 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A25B TCGA-A2-A25B-10A TCGA-A2-A25B-10A-01D-A166-01 81cd5b67-cd8b-433e-941c-6d5f6b8c1d33 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D11_802328.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-A2-A25B TCGA-A2-A25B-10A TCGA-A2-A25B-10A-01D-A166-01 81cd5b67-cd8b-433e-941c-6d5f6b8c1d33 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D11_802328.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A2-A25B TCGA-A2-A25B-10A TCGA-A2-A25B-10A-01D-A166-01 81cd5b67-cd8b-433e-941c-6d5f6b8c1d33 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D11_802328.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A2-A25B TCGA-A2-A25B-10A TCGA-A2-A25B-10A-01D-A166-01 81cd5b67-cd8b-433e-941c-6d5f6b8c1d33 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D11_802328.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A2-A25B TCGA-A2-A25B-10A TCGA-A2-A25B-10A-01D-A166-01 81cd5b67-cd8b-433e-941c-6d5f6b8c1d33 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D11_802328.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A2-A25B TCGA-A2-A25B-10A TCGA-A2-A25B-10A-01D-A166-01 81cd5b67-cd8b-433e-941c-6d5f6b8c1d33 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D11_802328.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A2-A25B TCGA-A2-A25B-10A TCGA-A2-A25B-10A-01D-A166-01 81cd5b67-cd8b-433e-941c-6d5f6b8c1d33 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D11_802328.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A2-A25B TCGA-A2-A25B-10A TCGA-A2-A25B-10A-01D-A166-01 81cd5b67-cd8b-433e-941c-6d5f6b8c1d33 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D11_802328.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-A2-A25B TCGA-A2-A25B-10A TCGA-A2-A25B-10A-01D-A167-09 c16cf182-b4b2-42c0-a2b1-ce071638de2f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A25B TCGA-A2-A25B-10A TCGA-A2-A25B-10A-01W-A184-09 82f26359-5fe0-4b4d-902a-e45b468c1160 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A25C TCGA-A2-A25C-01A TCGA-A2-A25C-01A-11D-A165-02 0b23d963-40a6-4214-afae-c77694a7d554 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A25C TCGA-A2-A25C-01A TCGA-A2-A25C-01A-11D-A166-01 bd2557ec-ce5b-4e98-aed0-2ca6ad51742e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A25C TCGA-A2-A25C-01A TCGA-A2-A25C-01A-11D-A166-01 bd2557ec-ce5b-4e98-aed0-2ca6ad51742e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B09_802432.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-A2-A25C TCGA-A2-A25C-01A TCGA-A2-A25C-01A-11D-A166-01 bd2557ec-ce5b-4e98-aed0-2ca6ad51742e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B09_802432.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A2-A25C TCGA-A2-A25C-01A TCGA-A2-A25C-01A-11D-A166-01 bd2557ec-ce5b-4e98-aed0-2ca6ad51742e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B09_802432.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A2-A25C TCGA-A2-A25C-01A TCGA-A2-A25C-01A-11D-A166-01 bd2557ec-ce5b-4e98-aed0-2ca6ad51742e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B09_802432.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A2-A25C TCGA-A2-A25C-01A TCGA-A2-A25C-01A-11D-A166-01 bd2557ec-ce5b-4e98-aed0-2ca6ad51742e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B09_802432.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A2-A25C TCGA-A2-A25C-01A TCGA-A2-A25C-01A-11D-A166-01 bd2557ec-ce5b-4e98-aed0-2ca6ad51742e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B09_802432.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A2-A25C TCGA-A2-A25C-01A TCGA-A2-A25C-01A-11D-A166-01 bd2557ec-ce5b-4e98-aed0-2ca6ad51742e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B09_802432.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A2-A25C TCGA-A2-A25C-01A TCGA-A2-A25C-01A-11D-A166-01 bd2557ec-ce5b-4e98-aed0-2ca6ad51742e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B09_802432.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-A2-A25C TCGA-A2-A25C-01A TCGA-A2-A25C-01A-11D-A167-09 2411fc4a-c0d7-4a60-a861-f4d954ef1ed5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A25C TCGA-A2-A25C-01A TCGA-A2-A25C-01A-11D-A16A-05 31194b5e-dc38-4773-893e-f41655e6a2f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A25C TCGA-A2-A25C-01A TCGA-A2-A25C-01A-11D-A16A-05 31194b5e-dc38-4773-893e-f41655e6a2f6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833155_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-A2-A25C TCGA-A2-A25C-01A TCGA-A2-A25C-01A-11D-A16A-05 31194b5e-dc38-4773-893e-f41655e6a2f6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833155_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-A2-A25C TCGA-A2-A25C-01A TCGA-A2-A25C-01A-11D-A16A-05 31194b5e-dc38-4773-893e-f41655e6a2f6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-2.TCGA-A2-A25C-01A-11D-A16A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0 142 07-NOV-11 04.58.21.556000000 PM TCGA-A2-A25C TCGA-A2-A25C-01A TCGA-A2-A25C-01A-11D-A16A-05 31194b5e-dc38-4773-893e-f41655e6a2f6 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A25C TCGA-A2-A25C-10A TCGA-A2-A25C-10A-01D-A166-01 3471dd9e-1de2-49bb-b9ee-4607492d304c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C01_802470.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-A2-A25C TCGA-A2-A25C-10A TCGA-A2-A25C-10A-01D-A166-01 3471dd9e-1de2-49bb-b9ee-4607492d304c SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C01_802470.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-A2-A25C TCGA-A2-A25C-10A TCGA-A2-A25C-10A-01D-A167-09 68b035a9-7582-43b2-9a33-cda050ee234f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A25C TCGA-A2-A25C-10A TCGA-A2-A25C-10A-01W-A184-09 fcb43e52-94eb-43f6-92b5-48c756106b49 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F10_799924.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A25D TCGA-A2-A25D-01A TCGA-A2-A25D-01A-12D-A16C-01 91bb8c75-008a-4c32-84bd-fb55524a39aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F10_799924.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A25D TCGA-A2-A25D-01A TCGA-A2-A25D-01A-12D-A16C-01 91bb8c75-008a-4c32-84bd-fb55524a39aa SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-A2-A25D TCGA-A2-A25D-01A TCGA-A2-A25D-01A-12D-A16G-05 f1d016e8-86b1-4abf-929e-69ea2e9bc2c5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009066_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-A2-A25D TCGA-A2-A25D-01A TCGA-A2-A25D-01A-12D-A16G-05 f1d016e8-86b1-4abf-929e-69ea2e9bc2c5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009066_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-A2-A25D TCGA-A2-A25D-01A TCGA-A2-A25D-01A-12D-A16G-05 f1d016e8-86b1-4abf-929e-69ea2e9bc2c5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-2.TCGA-A2-A25D-01A-12D-A16G-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0 147 07-NOV-11 05.10.40.874000000 PM TCGA-A2-A25D TCGA-A2-A25D-01A TCGA-A2-A25D-01A-12D-A16G-05 f1d016e8-86b1-4abf-929e-69ea2e9bc2c5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-3.TCGA-A2-A25D-01A-12D-A16G-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0 147 07-NOV-11 05.48.07.389000000 PM TCGA-A2-A25D TCGA-A2-A25D-01A TCGA-A2-A25D-01A-12R-A16E-13 511cecab-9bd8-4110-9a3a-d0a6da2b1078 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-A2-A25D TCGA-A2-A25D-01A TCGA-A2-A25D-01A-12R-A16E-13 511cecab-9bd8-4110-9a3a-d0a6da2b1078 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A25D-01A-12R-A16E-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A25D TCGA-A2-A25D-01A TCGA-A2-A25D-01A-12R-A16E-13 511cecab-9bd8-4110-9a3a-d0a6da2b1078 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A25D-01A-12R-A16E-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A25D TCGA-A2-A25D-01A TCGA-A2-A25D-01A-12R-A16F-07 d6b5cec3-edeb-46c5-839b-e62a1e850e0e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-A2-A25D TCGA-A2-A25D-01A TCGA-A2-A25D-01A-12R-A16F-07 d6b5cec3-edeb-46c5-839b-e62a1e850e0e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_617357.TCGA-A2-A25D-01A-12R-A16F-07.110930_UNC12-SN629_0146_BB01KPABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A25D TCGA-A2-A25D-01A TCGA-A2-A25D-01A-12R-A16F-07 d6b5cec3-edeb-46c5-839b-e62a1e850e0e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_617359.TCGA-A2-A25D-01A-12R-A16F-07.110930_UNC12-SN629_0146_BB01KPABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A25D TCGA-A2-A25D-01A TCGA-A2-A25D-01A-12R-A16F-07 d6b5cec3-edeb-46c5-839b-e62a1e850e0e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_617370.TCGA-A2-A25D-01A-12R-A16F-07.110930_UNC12-SN629_0146_BB01KPABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A25D TCGA-A2-A25D-01A TCGA-A2-A25D-01A-12W-A189-09 52121f3a-037b-4f1c-afae-ecc1a4f4506c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-A2-A25D TCGA-A2-A25D-10A TCGA-A2-A25D-10A-01D-A16B-02 8cfcbca6-ef32-45ab-9dd7-65d6ac9cefca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-A2-A25D TCGA-A2-A25D-10A TCGA-A2-A25D-10A-01D-A16C-01 e624a0dd-2fa7-4fb0-aad6-ca29bb202fdb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-A2-A25D TCGA-A2-A25D-10A TCGA-A2-A25D-10A-01D-A16C-01 e624a0dd-2fa7-4fb0-aad6-ca29bb202fdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G01_799968.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-A2-A25D TCGA-A2-A25D-10A TCGA-A2-A25D-10A-01D-A16C-01 e624a0dd-2fa7-4fb0-aad6-ca29bb202fdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G01_799968.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A25D TCGA-A2-A25D-10A TCGA-A2-A25D-10A-01D-A16C-01 e624a0dd-2fa7-4fb0-aad6-ca29bb202fdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G01_799968.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A25D TCGA-A2-A25D-10A TCGA-A2-A25D-10A-01D-A16C-01 e624a0dd-2fa7-4fb0-aad6-ca29bb202fdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G01_799968.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A25D TCGA-A2-A25D-10A TCGA-A2-A25D-10A-01D-A16C-01 e624a0dd-2fa7-4fb0-aad6-ca29bb202fdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G01_799968.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A25D TCGA-A2-A25D-10A TCGA-A2-A25D-10A-01D-A16C-01 e624a0dd-2fa7-4fb0-aad6-ca29bb202fdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G01_799968.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A25D TCGA-A2-A25D-10A TCGA-A2-A25D-10A-01D-A16C-01 e624a0dd-2fa7-4fb0-aad6-ca29bb202fdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G01_799968.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-A2-A25D TCGA-A2-A25D-10A TCGA-A2-A25D-10A-01D-A16C-01 e624a0dd-2fa7-4fb0-aad6-ca29bb202fdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G01_799968.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-A2-A25D TCGA-A2-A25D-10A TCGA-A2-A25D-10A-01D-A16D-09 a65719dd-2213-43c2-9f5b-1e82632009dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-A2-A25D TCGA-A2-A25D-10A TCGA-A2-A25D-10A-01W-A189-09 9ab23f5c-848c-48bb-9009-fbe35c876076 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-A2-A25E TCGA-A2-A25E-01A TCGA-A2-A25E-01A-11D-A165-02 6aa33f92-7d01-40e4-9059-8758ffd3d625 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A25E TCGA-A2-A25E-01A TCGA-A2-A25E-01A-11D-A166-01 d8bafd3e-45a4-4392-b06d-554c5d2eb95a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A25E TCGA-A2-A25E-01A TCGA-A2-A25E-01A-11D-A166-01 d8bafd3e-45a4-4392-b06d-554c5d2eb95a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E01_802482.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-A2-A25E TCGA-A2-A25E-01A TCGA-A2-A25E-01A-11D-A166-01 d8bafd3e-45a4-4392-b06d-554c5d2eb95a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E01_802482.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A2-A25E TCGA-A2-A25E-01A TCGA-A2-A25E-01A-11D-A166-01 d8bafd3e-45a4-4392-b06d-554c5d2eb95a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E01_802482.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A2-A25E TCGA-A2-A25E-01A TCGA-A2-A25E-01A-11D-A166-01 d8bafd3e-45a4-4392-b06d-554c5d2eb95a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E01_802482.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A2-A25E TCGA-A2-A25E-01A TCGA-A2-A25E-01A-11D-A166-01 d8bafd3e-45a4-4392-b06d-554c5d2eb95a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E01_802482.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A2-A25E TCGA-A2-A25E-01A TCGA-A2-A25E-01A-11D-A166-01 d8bafd3e-45a4-4392-b06d-554c5d2eb95a SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A25E TCGA-A2-A25E-01A TCGA-A2-A25E-01A-11D-A16A-05 fbbdc443-cb2f-40ec-85db-46196347baa5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833142_R05C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-A2-A25E TCGA-A2-A25E-01A TCGA-A2-A25E-01A-11D-A16A-05 fbbdc443-cb2f-40ec-85db-46196347baa5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833142_R05C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-A2-A25E TCGA-A2-A25E-01A TCGA-A2-A25E-01A-11D-A16A-05 fbbdc443-cb2f-40ec-85db-46196347baa5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-2.TCGA-A2-A25E-01A-11D-A16A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0 142 07-NOV-11 04.58.21.556000000 PM TCGA-A2-A25E TCGA-A2-A25E-01A TCGA-A2-A25E-01A-11D-A16A-05 fbbdc443-cb2f-40ec-85db-46196347baa5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-3.TCGA-A2-A25E-01A-11D-A16A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0 142 07-NOV-11 06.37.11.245000000 PM TCGA-A2-A25E TCGA-A2-A25E-01A TCGA-A2-A25E-01A-11R-A168-13 35fd492f-3b46-4ac9-8ffd-6b3bf4ba70d3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A25E TCGA-A2-A25E-01A TCGA-A2-A25E-01A-11R-A168-13 35fd492f-3b46-4ac9-8ffd-6b3bf4ba70d3 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A25E-01A-11R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A25E TCGA-A2-A25E-01A TCGA-A2-A25E-01A-11R-A168-13 35fd492f-3b46-4ac9-8ffd-6b3bf4ba70d3 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A2-A25E-01A-11R-A168-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-A2-A25E TCGA-A2-A25E-01A TCGA-A2-A25E-01A-11R-A169-07 7265c93b-7138-4bc8-bc9c-22ce1abf0ef2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A25E TCGA-A2-A25E-01A TCGA-A2-A25E-01A-11R-A169-07 7265c93b-7138-4bc8-bc9c-22ce1abf0ef2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_591646.TCGA-A2-A25E-01A-11R-A169-07.110919_UNC12-SN629_0141_AB0104ABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A25E TCGA-A2-A25E-01A TCGA-A2-A25E-01A-11R-A169-07 7265c93b-7138-4bc8-bc9c-22ce1abf0ef2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_591666.TCGA-A2-A25E-01A-11R-A169-07.110919_UNC12-SN629_0141_AB0104ABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A25E TCGA-A2-A25E-01A TCGA-A2-A25E-01A-11R-A169-07 7265c93b-7138-4bc8-bc9c-22ce1abf0ef2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_591772.TCGA-A2-A25E-01A-11R-A169-07.110919_UNC12-SN629_0141_AB0104ABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-A2-A25E TCGA-A2-A25E-01A TCGA-A2-A25E-01A-11W-A184-09 d35d2fbe-7b2c-49de-a56a-616ff86969fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A25E TCGA-A2-A25E-10A TCGA-A2-A25E-10A-01D-A165-02 6d0954c8-53ad-43e3-bc18-76ca1205a537 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A25E TCGA-A2-A25E-10A TCGA-A2-A25E-10A-01D-A166-01 03888e7e-92ba-4b7e-92ee-d156a93afa66 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A25E TCGA-A2-A25E-10A TCGA-A2-A25E-10A-01D-A166-01 03888e7e-92ba-4b7e-92ee-d156a93afa66 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G07_802412.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-A2-A25E TCGA-A2-A25E-10A TCGA-A2-A25E-10A-01D-A166-01 03888e7e-92ba-4b7e-92ee-d156a93afa66 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G07_802412.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A2-A25E TCGA-A2-A25E-10A TCGA-A2-A25E-10A-01D-A166-01 03888e7e-92ba-4b7e-92ee-d156a93afa66 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G07_802412.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A2-A25E TCGA-A2-A25E-10A TCGA-A2-A25E-10A-01D-A166-01 03888e7e-92ba-4b7e-92ee-d156a93afa66 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G07_802412.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-A2-A25E TCGA-A2-A25E-10A TCGA-A2-A25E-10A-01D-A167-09 17b3d764-49f2-4ba6-ac9e-44619e31943f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A25E TCGA-A2-A25E-10A TCGA-A2-A25E-10A-01W-A184-09 5431b691-0c05-40af-8a30-b7de8b3cf154 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A25F TCGA-A2-A25F-01A TCGA-A2-A25F-01A-11D-A166-01 c4d15095-d0bf-4fe0-a2b9-52e0119a7a26 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C07_802500.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-A2-A25F TCGA-A2-A25F-01A TCGA-A2-A25F-01A-11D-A166-01 c4d15095-d0bf-4fe0-a2b9-52e0119a7a26 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A25F TCGA-A2-A25F-01A TCGA-A2-A25F-01A-11D-A16A-05 b9fbc1b5-ef23-4f5c-99b0-76ce6a93696d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833142_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-A2-A25F TCGA-A2-A25F-01A TCGA-A2-A25F-01A-11D-A16A-05 b9fbc1b5-ef23-4f5c-99b0-76ce6a93696d DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E06_802376.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-A2-A25F TCGA-A2-A25F-10A TCGA-A2-A25F-10A-01D-A167-09 26fd695a-be03-4a4c-95c2-937216977eb1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A25F TCGA-A2-A25F-10A TCGA-A2-A25F-10A-01W-A184-09 9d95b779-a70c-4e53-90a2-a824cc4c0c30 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A2-A25F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A2-A3KC TCGA-A2-A3KC-01A TCGA-A2-A3KC-01A-11D-A20R-01 add405f0-8223-4e7d-b1aa-7cdf9432a16f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A2-A3KC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A2-A3KC TCGA-A2-A3KC-01A TCGA-A2-A3KC-01A-11D-A20S-09 f9f04e42-63a2-4ee1-ade4-9e5bb5c20cdd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A2-A3KC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A2-A3KC TCGA-A2-A3KC-01A TCGA-A2-A3KC-01A-11D-A212-05 50cb83c3-987d-48b5-b576-52ef9f99e16b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A2-A3KC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A2-A3KC TCGA-A2-A3KC-01A TCGA-A2-A3KC-01A-11R-A213-07 7bbe4637-394e-42c0-af7d-6184c3f48916 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A2-A3KC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A2-A3KC TCGA-A2-A3KC-01A TCGA-A2-A3KC-01A-11R-A214-13 7b23c853-2a9e-4c8b-9f39-bd432f16a9f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A2-A3KC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A2-A3KC TCGA-A2-A3KC-10A TCGA-A2-A3KC-10A-01D-A20R-01 b97463fe-aea2-4a96-aa34-00299897e7f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A2-A3KC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A2-A3KC TCGA-A2-A3KC-10A TCGA-A2-A3KC-10A-01D-A20S-09 abba0fe4-8c3b-4b8d-9b68-36708ba3a4ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A2-A3KC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A2-A3KD TCGA-A2-A3KD-01A TCGA-A2-A3KD-01A-12D-A20R-01 b9d3e65d-b417-4611-b340-e9d8365e9fd9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A2-A3KD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A2-A3KD TCGA-A2-A3KD-01A TCGA-A2-A3KD-01A-12D-A20S-09 37ddccc5-9ff1-4733-a5a9-595bba074e54 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A2-A3KD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A2-A3KD TCGA-A2-A3KD-01A TCGA-A2-A3KD-01A-12D-A212-05 40e1934f-b039-46aa-a631-903fbaf8c4e7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A2-A3KD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A2-A3KD TCGA-A2-A3KD-01A TCGA-A2-A3KD-01A-12R-A213-07 8a224dc6-632b-418b-bd5e-bcefc8ad049e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A2-A3KD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A2-A3KD TCGA-A2-A3KD-01A TCGA-A2-A3KD-01A-12R-A214-13 3dba96c9-2271-4a8d-8bf0-02bce1046c03 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A2-A3KD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A2-A3KD TCGA-A2-A3KD-10A TCGA-A2-A3KD-10A-01D-A20R-01 01bfa925-d8f2-4ead-ad89-8cc91b8c3c92 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A2-A3KD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A2-A3KD TCGA-A2-A3KD-10A TCGA-A2-A3KD-10A-01D-A20S-09 4d1c9503-ba24-449f-8f5c-8eb3a54067a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A2-A3KD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11D-A00Y-05 33dd2027-0533-44d8-8834-297ed421e17d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11D-A00Y-05 33dd2027-0533-44d8-8834-297ed421e17d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A7-A0CD-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11D-A00Y-05 33dd2027-0533-44d8-8834-297ed421e17d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A7-A0CD-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11D-A00Y-05 33dd2027-0533-44d8-8834-297ed421e17d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A7-A0CD-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11D-A011-01 a82e297d-8342-44f1-b7e8-e42872c834fa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11D-A011-01 a82e297d-8342-44f1-b7e8-e42872c834fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B07_628378.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11D-A011-01 a82e297d-8342-44f1-b7e8-e42872c834fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B07_628378.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11D-A011-01 a82e297d-8342-44f1-b7e8-e42872c834fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B07_628378.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11D-A011-01 a82e297d-8342-44f1-b7e8-e42872c834fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B07_628378.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11D-A011-01 a82e297d-8342-44f1-b7e8-e42872c834fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B07_628378.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11D-A011-01 a82e297d-8342-44f1-b7e8-e42872c834fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B07_628378.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11D-A011-01 a82e297d-8342-44f1-b7e8-e42872c834fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B07_628378.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11D-A011-01 a82e297d-8342-44f1-b7e8-e42872c834fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B07_628378.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11D-A015-09 f4b35543-102e-4a75-bef8-959ffa212359 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11D-A016-08 d48c53f6-a868-4ebb-b2aa-cb460d630b6a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11D-A068-02 95039446-24f9-4724-b9e8-6c2828dad7d5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11R-A00Z-07 1edf44b5-61ba-47cd-81ed-b586ae81cb32 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11R-A00Z-07 1edf44b5-61ba-47cd-81ed-b586ae81cb32 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011894_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11R-A00Z-07 1edf44b5-61ba-47cd-81ed-b586ae81cb32 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011894_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11R-A00Z-07 1edf44b5-61ba-47cd-81ed-b586ae81cb32 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011894_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11R-A00Z-07 1edf44b5-61ba-47cd-81ed-b586ae81cb32 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_608164.TCGA-A7-A0CD-01A-11R-A00Z-07.110228_UNC10-SN254_0198_BB041RABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11R-A00Z-07 1edf44b5-61ba-47cd-81ed-b586ae81cb32 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_608195.TCGA-A7-A0CD-01A-11R-A00Z-07.110228_UNC10-SN254_0198_BB041RABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11R-A00Z-07 1edf44b5-61ba-47cd-81ed-b586ae81cb32 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_608361.TCGA-A7-A0CD-01A-11R-A00Z-07.110228_UNC10-SN254_0198_BB041RABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11R-A010-13 307715ed-5283-4c89-99bd-0e92343e1851 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11R-A010-13 307715ed-5283-4c89-99bd-0e92343e1851 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A7-A0CD-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11R-A010-13 307715ed-5283-4c89-99bd-0e92343e1851 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A7-A0CD-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11W-A019-09 d29ba065-28ca-4dfb-9588-06be857f67b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11W-A019-09 d29ba065-28ca-4dfb-9588-06be857f67b2 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11W-A020-08 8c9cc0c4-50a6-41ad-966b-3abe035d523d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11X-A023-09 40d11481-c295-41e9-a460-fdc562988170 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-01A TCGA-A7-A0CD-01A-11X-A024-08 cf9bc6b0-a8c6-48d9-ae30-4f23581e7816 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-10A TCGA-A7-A0CD-10A-01D-A012-01 e048e78c-0b16-40f0-87c0-aa1e7cd3b5d5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-10A TCGA-A7-A0CD-10A-01D-A012-01 e048e78c-0b16-40f0-87c0-aa1e7cd3b5d5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D11_628352.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-10A TCGA-A7-A0CD-10A-01D-A012-01 e048e78c-0b16-40f0-87c0-aa1e7cd3b5d5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D11_628352.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-10A TCGA-A7-A0CD-10A-01D-A012-01 e048e78c-0b16-40f0-87c0-aa1e7cd3b5d5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D11_628352.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-10A TCGA-A7-A0CD-10A-01D-A012-01 e048e78c-0b16-40f0-87c0-aa1e7cd3b5d5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D11_628352.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-10A TCGA-A7-A0CD-10A-01D-A012-01 e048e78c-0b16-40f0-87c0-aa1e7cd3b5d5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D11_628352.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-10A TCGA-A7-A0CD-10A-01D-A012-01 e048e78c-0b16-40f0-87c0-aa1e7cd3b5d5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D11_628352.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-10A TCGA-A7-A0CD-10A-01D-A012-01 e048e78c-0b16-40f0-87c0-aa1e7cd3b5d5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D11_628352.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-10A TCGA-A7-A0CD-10A-01D-A012-01 e048e78c-0b16-40f0-87c0-aa1e7cd3b5d5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D11_628352.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-10A TCGA-A7-A0CD-10A-01D-A017-09 65bc4027-cf1d-4dcd-ac69-742bbf932204 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-10A TCGA-A7-A0CD-10A-01D-A018-08 6f16c417-bb62-4a76-9db8-b58aa726ff9c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-10A TCGA-A7-A0CD-10A-01D-A069-02 f3f5fa68-69ee-4d3c-ad70-71b391eb5f16 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-10A TCGA-A7-A0CD-10A-01W-A021-09 1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-10A TCGA-A7-A0CD-10A-01W-A021-09 1f53f23c-bb31-4247-ba6a-fa2b4d7d9fbf Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-10A TCGA-A7-A0CD-10A-01W-A022-08 b171e285-94b3-4ada-8ded-419b4248d06c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-10A TCGA-A7-A0CD-10A-01X-A025-09 ebce3e9f-acb9-4714-9488-00463c489bd2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CD TCGA-A7-A0CD-10A TCGA-A7-A0CD-10A-01X-A026-08 7fdb9995-a3b6-4d63-9cdf-083c6c75d77b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy from Jay Bowen/NWCH / Case had prior malignancy TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11D-A00Y-05 8ece3134-dfc7-47b5-b152-5f1ad61c0d71 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11D-A00Y-05 8ece3134-dfc7-47b5-b152-5f1ad61c0d71 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A7-A0CE-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11D-A00Y-05 8ece3134-dfc7-47b5-b152-5f1ad61c0d71 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A7-A0CE-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11D-A00Y-05 8ece3134-dfc7-47b5-b152-5f1ad61c0d71 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A7-A0CE-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11D-A011-01 f79ed0dc-7704-4967-b62c-0112de377fc3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11D-A011-01 f79ed0dc-7704-4967-b62c-0112de377fc3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H07_628258.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11D-A011-01 f79ed0dc-7704-4967-b62c-0112de377fc3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H07_628258.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11D-A011-01 f79ed0dc-7704-4967-b62c-0112de377fc3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H07_628258.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11D-A011-01 f79ed0dc-7704-4967-b62c-0112de377fc3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H07_628258.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11D-A011-01 f79ed0dc-7704-4967-b62c-0112de377fc3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H07_628258.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11D-A011-01 f79ed0dc-7704-4967-b62c-0112de377fc3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H07_628258.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11D-A011-01 f79ed0dc-7704-4967-b62c-0112de377fc3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H07_628258.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11D-A011-01 f79ed0dc-7704-4967-b62c-0112de377fc3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H07_628258.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11D-A015-09 9b6c595c-cf0f-4aea-831c-ad77c3125897 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11D-A016-08 7af63bf0-1752-467c-b5b5-96193d54256d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11D-A068-02 59d20a08-3585-4879-9450-cdbe30f3633b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11D-A12L-09 7b08e810-f3c9-4155-ac11-f45a3a4f8b41 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11D-A148-05 4ff7626b-4c2f-40fd-9df1-10c1a488402a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11R-A00Z-07 e8ef8b75-7c0c-4a42-9a10-3789b6afa5d2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11R-A00Z-07 e8ef8b75-7c0c-4a42-9a10-3789b6afa5d2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012042_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11R-A00Z-07 e8ef8b75-7c0c-4a42-9a10-3789b6afa5d2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012042_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11R-A00Z-07 e8ef8b75-7c0c-4a42-9a10-3789b6afa5d2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012042_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11R-A00Z-07 e8ef8b75-7c0c-4a42-9a10-3789b6afa5d2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_660143.TCGA-A7-A0CE-01A-11R-A00Z-07.110308_UNC9-SN296_0158_BB042UABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11R-A00Z-07 e8ef8b75-7c0c-4a42-9a10-3789b6afa5d2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_660186.TCGA-A7-A0CE-01A-11R-A00Z-07.110308_UNC9-SN296_0158_BB042UABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11R-A00Z-07 e8ef8b75-7c0c-4a42-9a10-3789b6afa5d2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_660307.TCGA-A7-A0CE-01A-11R-A00Z-07.110308_UNC9-SN296_0158_BB042UABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11R-A010-13 06a50854-12cb-4325-8b6d-65a9ad4e8940 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11R-A010-13 06a50854-12cb-4325-8b6d-65a9ad4e8940 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A7-A0CE-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11R-A010-13 06a50854-12cb-4325-8b6d-65a9ad4e8940 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A7-A0CE-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11W-A019-09 e8c1bd4a-69aa-4496-96d0-d580d1ccc04c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11W-A019-09 e8c1bd4a-69aa-4496-96d0-d580d1ccc04c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11W-A020-08 8ac7259f-54bc-4f87-92b0-6bfb32a747aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11X-A023-09 6ae3fb12-fc81-4d0e-8dc7-735288b33009 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-01A TCGA-A7-A0CE-01A-11X-A024-08 1825c1d2-53d6-45a4-9b08-75a886a18828 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-10A TCGA-A7-A0CE-10A-01D-A012-01 435b6080-782a-4a12-8139-05de63e089e2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-10A TCGA-A7-A0CE-10A-01D-A012-01 435b6080-782a-4a12-8139-05de63e089e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H09_628242.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A7-A0CE TCGA-A7-A0CE-10A TCGA-A7-A0CE-10A-01D-A012-01 435b6080-782a-4a12-8139-05de63e089e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H09_628242.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-10A TCGA-A7-A0CE-10A-01D-A012-01 435b6080-782a-4a12-8139-05de63e089e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H09_628242.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-10A TCGA-A7-A0CE-10A-01D-A012-01 435b6080-782a-4a12-8139-05de63e089e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H09_628242.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-10A TCGA-A7-A0CE-10A-01D-A012-01 435b6080-782a-4a12-8139-05de63e089e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H09_628242.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-10A TCGA-A7-A0CE-10A-01D-A012-01 435b6080-782a-4a12-8139-05de63e089e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H09_628242.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-10A TCGA-A7-A0CE-10A-01D-A012-01 435b6080-782a-4a12-8139-05de63e089e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H09_628242.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-10A TCGA-A7-A0CE-10A-01D-A012-01 435b6080-782a-4a12-8139-05de63e089e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H09_628242.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-10A TCGA-A7-A0CE-10A-01D-A017-09 5f750c41-ac61-4246-9224-e077b83d35f2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-10A TCGA-A7-A0CE-10A-01D-A018-08 57db34e1-4865-4afd-a269-ae020b214533 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-10A TCGA-A7-A0CE-10A-01D-A069-02 ac728bb7-e1a6-4234-a7f6-706b607105e8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-10A TCGA-A7-A0CE-10A-01W-A021-09 40f1c52b-2063-4541-8600-865735b708b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-10A TCGA-A7-A0CE-10A-01W-A021-09 40f1c52b-2063-4541-8600-865735b708b0 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-10A TCGA-A7-A0CE-10A-01W-A022-08 5ab6f180-dc31-4dda-9411-87377d53df1f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-10A TCGA-A7-A0CE-10A-01X-A025-09 cf853658-ab7d-4434-bc59-7ffd7a6e933c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-10A TCGA-A7-A0CE-10A-01X-A026-08 6d6139a5-34ba-49d3-ada9-8a48aa3cc3fc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21D-A091-02 ae46b7b6-8a50-400d-a674-a3f77274b63d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21D-A092-01 200c5c64-517f-4aa6-ab4b-3dbb0a3e6b04 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21D-A092-01 200c5c64-517f-4aa6-ab4b-3dbb0a3e6b04 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H03_729588.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21D-A092-01 200c5c64-517f-4aa6-ab4b-3dbb0a3e6b04 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H03_729588.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21D-A092-01 200c5c64-517f-4aa6-ab4b-3dbb0a3e6b04 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H03_729588.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21D-A092-01 200c5c64-517f-4aa6-ab4b-3dbb0a3e6b04 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H03_729588.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21D-A092-01 200c5c64-517f-4aa6-ab4b-3dbb0a3e6b04 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H03_729588.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21D-A092-01 200c5c64-517f-4aa6-ab4b-3dbb0a3e6b04 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H03_729588.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21D-A092-01 200c5c64-517f-4aa6-ab4b-3dbb0a3e6b04 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H03_729588.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21D-A092-01 200c5c64-517f-4aa6-ab4b-3dbb0a3e6b04 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H03_729588.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21D-A093-05 739fdc4b-8e00-4037-afd5-74b3c8d5fd80 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21D-A100-09 1d4e9a6c-2705-4711-8f33-d5c3e3a80145 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21D-A10Q-05 bbf79e49-f83c-49d9-b40a-5de1f36bf396 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21D-A10Q-05 bbf79e49-f83c-49d9-b40a-5de1f36bf396 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0/6005486013_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0 47 07-NOV-11 04.04.17.697000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21D-A10Q-05 bbf79e49-f83c-49d9-b40a-5de1f36bf396 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0/6005486013_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0 47 07-NOV-11 04.04.17.697000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21D-A10Q-05 bbf79e49-f83c-49d9-b40a-5de1f36bf396 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.1.1.0/jhu-usc.edu_BRCA.HumanMethylation450.1.lvl-2.TCGA-A7-A0CE-11A-21D-A10Q-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.1.1.0 47 07-NOV-11 04.38.19.253000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21D-A10Q-05 bbf79e49-f83c-49d9-b40a-5de1f36bf396 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.1.1.0/jhu-usc.edu_BRCA.HumanMethylation450.1.lvl-3.TCGA-A7-A0CE-11A-21D-A10Q-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.1.1.0 47 07-NOV-11 05.34.09.862000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21D-A12L-09 efcab56b-6f30-4443-801d-4bb8e30ccad5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21D-A148-05 805f2c82-49d5-4994-a2a5-98dd1b832f0b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21R-A089-07 2d5351f1-e9d7-44a3-ae43-f595a0151516 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21R-A089-07 2d5351f1-e9d7-44a3-ae43-f595a0151516 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012674_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 47 02-NOV-10 12.30.07.283000000 AM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21R-A089-07 2d5351f1-e9d7-44a3-ae43-f595a0151516 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012674_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 47 02-NOV-10 12.25.38.097000000 AM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21R-A089-07 2d5351f1-e9d7-44a3-ae43-f595a0151516 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012674_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 47 02-NOV-10 12.26.20.805000000 AM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21R-A090-13 e1937f7b-d398-45f1-a2a3-6e70f6ad44b1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21R-A090-13 e1937f7b-d398-45f1-a2a3-6e70f6ad44b1 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A7-A0CE-11A-21R-A090-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21R-A090-13 e1937f7b-d398-45f1-a2a3-6e70f6ad44b1 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A7-A0CE-11A-21R-A090-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21W-A100-09 4c81cd23-413c-45a2-bd6e-73212e75ab8c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21W-A100-09 4c81cd23-413c-45a2-bd6e-73212e75ab8c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A7-A0CE TCGA-A7-A0CE-11A TCGA-A7-A0CE-11A-21X-A100-09 fe3b5955-6690-4099-bb94-0e0e631697df Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-11D-A00Y-05 3d1d3a07-50aa-4870-91b1-89d9766c2eaa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-11D-A00Y-05 3d1d3a07-50aa-4870-91b1-89d9766c2eaa DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A7-A0CG-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-11D-A00Y-05 3d1d3a07-50aa-4870-91b1-89d9766c2eaa DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A7-A0CG-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-11D-A00Y-05 3d1d3a07-50aa-4870-91b1-89d9766c2eaa DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A7-A0CG-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-11D-A011-01 5c6ed3a7-7ba7-44e2-b33f-dc104789b0eb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-11D-A011-01 5c6ed3a7-7ba7-44e2-b33f-dc104789b0eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A07_628228.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-11D-A011-01 5c6ed3a7-7ba7-44e2-b33f-dc104789b0eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A07_628228.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-11D-A011-01 5c6ed3a7-7ba7-44e2-b33f-dc104789b0eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A07_628228.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-11D-A011-01 5c6ed3a7-7ba7-44e2-b33f-dc104789b0eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A07_628228.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-11D-A011-01 5c6ed3a7-7ba7-44e2-b33f-dc104789b0eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A07_628228.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-11D-A011-01 5c6ed3a7-7ba7-44e2-b33f-dc104789b0eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A07_628228.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-11D-A011-01 5c6ed3a7-7ba7-44e2-b33f-dc104789b0eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A07_628228.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-11D-A011-01 5c6ed3a7-7ba7-44e2-b33f-dc104789b0eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A07_628228.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-11D-A015-09 bc55c87d-0f93-42c9-8cd4-c77ef12adad8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-11D-A016-08 839cb687-62cf-41ed-8baf-8859edd4a82c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-11R-A00Z-07 4d0d2cdd-5a80-4cf5-beaf-12c1a6c4d907 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-11R-A010-13 3f916873-9e88-406b-bb6d-92a803a17434 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-11R-A038-13 0f6e4d1b-9176-43c6-bdf9-0044ccc1b59e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-11R-A038-13 0f6e4d1b-9176-43c6-bdf9-0044ccc1b59e miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A7-A0CG-01A-11R-A038-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-11R-A038-13 0f6e4d1b-9176-43c6-bdf9-0044ccc1b59e miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A7-A0CG-01A-11R-A038-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-11W-A019-09 351275c7-70ca-4ddc-be76-a6ff4dc7655e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-11W-A019-09 351275c7-70ca-4ddc-be76-a6ff4dc7655e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-11W-A020-08 478c2cd4-a72f-4f28-96f3-511fbf6295f3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-11X-A023-09 4cc065c2-94dd-407d-89e0-62c69547b260 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-11X-A024-08 400671d8-4cf0-45eb-ad0f-8674c27e13c6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-12R-A056-07 2b0e2135-a1e4-4785-8b9f-b4cf7b36d938 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-12R-A056-07 2b0e2135-a1e4-4785-8b9f-b4cf7b36d938 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012152_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-12R-A056-07 2b0e2135-a1e4-4785-8b9f-b4cf7b36d938 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012152_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-12R-A056-07 2b0e2135-a1e4-4785-8b9f-b4cf7b36d938 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012152_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-12R-A056-07 2b0e2135-a1e4-4785-8b9f-b4cf7b36d938 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446115.TCGA-A7-A0CG-01A-12R-A056-07.110824_UNC13-SN749_0098_AC03YVABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-12R-A056-07 2b0e2135-a1e4-4785-8b9f-b4cf7b36d938 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446134.TCGA-A7-A0CG-01A-12R-A056-07.110824_UNC13-SN749_0098_AC03YVABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-01A TCGA-A7-A0CG-01A-12R-A056-07 2b0e2135-a1e4-4785-8b9f-b4cf7b36d938 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446256.TCGA-A7-A0CG-01A-12R-A056-07.110824_UNC13-SN749_0098_AC03YVABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-10A TCGA-A7-A0CG-10A-01D-A012-01 0da66a37-8bde-4c01-b515-6ad5fe2632b5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-10A TCGA-A7-A0CG-10A-01D-A012-01 0da66a37-8bde-4c01-b515-6ad5fe2632b5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A04_628246.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A7-A0CG TCGA-A7-A0CG-10A TCGA-A7-A0CG-10A-01D-A012-01 0da66a37-8bde-4c01-b515-6ad5fe2632b5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A04_628246.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-10A TCGA-A7-A0CG-10A-01D-A012-01 0da66a37-8bde-4c01-b515-6ad5fe2632b5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A04_628246.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-10A TCGA-A7-A0CG-10A-01D-A012-01 0da66a37-8bde-4c01-b515-6ad5fe2632b5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A04_628246.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-10A TCGA-A7-A0CG-10A-01D-A012-01 0da66a37-8bde-4c01-b515-6ad5fe2632b5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A04_628246.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-10A TCGA-A7-A0CG-10A-01D-A012-01 0da66a37-8bde-4c01-b515-6ad5fe2632b5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A04_628246.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-10A TCGA-A7-A0CG-10A-01D-A012-01 0da66a37-8bde-4c01-b515-6ad5fe2632b5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A04_628246.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-10A TCGA-A7-A0CG-10A-01D-A012-01 0da66a37-8bde-4c01-b515-6ad5fe2632b5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A04_628246.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-10A TCGA-A7-A0CG-10A-01D-A017-09 0443706b-23c6-480d-8732-e483dfec3e12 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-10A TCGA-A7-A0CG-10A-01D-A018-08 8299d401-230d-4487-9b4d-450373d47a96 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-10A TCGA-A7-A0CG-10A-01W-A021-09 b7b01df0-5282-4fbd-89f4-d52e050d047a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-10A TCGA-A7-A0CG-10A-01W-A021-09 b7b01df0-5282-4fbd-89f4-d52e050d047a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-10A TCGA-A7-A0CG-10A-01W-A022-08 a884b587-eb33-4d32-9d87-b0c09be6915b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-10A TCGA-A7-A0CG-10A-01X-A025-09 3e93fa4b-e5ea-4136-aadd-f057f452b8f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CG TCGA-A7-A0CG-10A TCGA-A7-A0CG-10A-01X-A026-08 e5421f35-1ab3-459f-a29f-a6cf5b695d4a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21D-A00Y-05 3ec33995-d5f0-4ad2-99d7-c52cde078e96 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21D-A00Y-05 3ec33995-d5f0-4ad2-99d7-c52cde078e96 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A7-A0CH-01A-21D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21D-A00Y-05 3ec33995-d5f0-4ad2-99d7-c52cde078e96 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A7-A0CH-01A-21D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21D-A00Y-05 3ec33995-d5f0-4ad2-99d7-c52cde078e96 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A7-A0CH-01A-21D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21D-A011-01 05ee789e-dc0f-4f44-a238-84ec5a8207ab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21D-A011-01 05ee789e-dc0f-4f44-a238-84ec5a8207ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H06_628302.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21D-A011-01 05ee789e-dc0f-4f44-a238-84ec5a8207ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H06_628302.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21D-A011-01 05ee789e-dc0f-4f44-a238-84ec5a8207ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H06_628302.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21D-A011-01 05ee789e-dc0f-4f44-a238-84ec5a8207ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H06_628302.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21D-A011-01 05ee789e-dc0f-4f44-a238-84ec5a8207ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H06_628302.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21D-A011-01 05ee789e-dc0f-4f44-a238-84ec5a8207ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H06_628302.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21D-A011-01 05ee789e-dc0f-4f44-a238-84ec5a8207ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H06_628302.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21D-A011-01 05ee789e-dc0f-4f44-a238-84ec5a8207ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H06_628302.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21D-A015-09 c4bc3a08-ff79-4774-8a3f-46b49f2504ca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21D-A016-08 ae019d75-ad6b-449d-ab44-353d51ba3c58 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21D-A068-02 f62cb347-8b32-4a37-b5db-56124ac7ee27 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21R-A00Z-07 0b225e38-d4c8-4cb5-a668-316894ab858f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21R-A00Z-07 0b225e38-d4c8-4cb5-a668-316894ab858f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011826_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21R-A00Z-07 0b225e38-d4c8-4cb5-a668-316894ab858f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011826_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21R-A00Z-07 0b225e38-d4c8-4cb5-a668-316894ab858f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011826_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21R-A00Z-07 0b225e38-d4c8-4cb5-a668-316894ab858f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_609237.TCGA-A7-A0CH-01A-21R-A00Z-07.110222_SN627_0062_A81FPKABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21R-A00Z-07 0b225e38-d4c8-4cb5-a668-316894ab858f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_609240.TCGA-A7-A0CH-01A-21R-A00Z-07.110222_SN627_0062_A81FPKABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21R-A00Z-07 0b225e38-d4c8-4cb5-a668-316894ab858f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_609253.TCGA-A7-A0CH-01A-21R-A00Z-07.110222_SN627_0062_A81FPKABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21R-A010-13 72634951-ef5a-422f-b3c2-7fdcb8af1eaa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21R-A038-13 aa0a6e38-bf63-478c-bc3d-6a7f4fde9a28 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21R-A038-13 aa0a6e38-bf63-478c-bc3d-6a7f4fde9a28 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A7-A0CH-01A-21R-A038-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21R-A038-13 aa0a6e38-bf63-478c-bc3d-6a7f4fde9a28 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A7-A0CH-01A-21R-A038-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21W-A019-09 0abb515a-8645-42d9-a5f4-f1363bc17ef9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21W-A019-09 0abb515a-8645-42d9-a5f4-f1363bc17ef9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21W-A020-08 6cfb0370-7c68-482a-af84-62367e3ee63d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21X-A023-09 72f0ac1e-68b6-479c-8f4b-3a546e76d8b4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-01A TCGA-A7-A0CH-01A-21X-A024-08 d4bd3730-d850-4444-99df-9dcddff689d9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-10A TCGA-A7-A0CH-10A-01D-A012-01 a253cef7-c131-4261-af2a-0a12557d9b9d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A08_628220.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A08_628220.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A08_628220.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A08_628220.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A08_628220.ismpolish.data.txt'. TCGA-A7-A0CH TCGA-A7-A0CH-10A TCGA-A7-A0CH-10A-01D-A012-01 a253cef7-c131-4261-af2a-0a12557d9b9d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A08_628220.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A08_628220.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A08_628220.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A08_628220.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A08_628220.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A08_628220.ismpolish.data.txt'. TCGA-A7-A0CH TCGA-A7-A0CH-10A TCGA-A7-A0CH-10A-01D-A012-01 a253cef7-c131-4261-af2a-0a12557d9b9d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A08_628220.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A08_628220.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A08_628220.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A08_628220.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A08_628220.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A08_628220.ismpolish.data.txt'. TCGA-A7-A0CH TCGA-A7-A0CH-10A TCGA-A7-A0CH-10A-01D-A017-09 fd3d6a77-7a4f-48df-9cee-1b241c04375c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-10A TCGA-A7-A0CH-10A-01D-A018-08 37221274-ddd9-45d9-b32b-55ea4a4c7231 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-10A TCGA-A7-A0CH-10A-01D-A069-02 e6e1d0ae-67c6-485c-a400-8b5073cacf5d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-10A TCGA-A7-A0CH-10A-01W-A021-09 ef4ad5bd-7fd5-4847-86cc-70f0a075656d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-10A TCGA-A7-A0CH-10A-01W-A021-09 ef4ad5bd-7fd5-4847-86cc-70f0a075656d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-10A TCGA-A7-A0CH-10A-01W-A022-08 11ecf59b-52ef-4539-b310-c08bb16bc72d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-10A TCGA-A7-A0CH-10A-01X-A025-09 60c7a7dc-9c5a-426f-902d-efd17ef1564e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-10A TCGA-A7-A0CH-10A-01X-A026-08 3d6d1e51-14b9-488e-a42f-27d044418253 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-11A TCGA-A7-A0CH-11A-32D-A092-01 f1e65f76-7c0e-436a-b031-93d0b9fd2c4c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-11A TCGA-A7-A0CH-11A-32D-A092-01 f1e65f76-7c0e-436a-b031-93d0b9fd2c4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G09_729722.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A7-A0CH TCGA-A7-A0CH-11A TCGA-A7-A0CH-11A-32D-A092-01 f1e65f76-7c0e-436a-b031-93d0b9fd2c4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G09_729722.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-11A TCGA-A7-A0CH-11A-32D-A092-01 f1e65f76-7c0e-436a-b031-93d0b9fd2c4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G09_729722.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-11A TCGA-A7-A0CH-11A-32D-A092-01 f1e65f76-7c0e-436a-b031-93d0b9fd2c4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G09_729722.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-11A TCGA-A7-A0CH-11A-32D-A092-01 f1e65f76-7c0e-436a-b031-93d0b9fd2c4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G09_729722.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-11A TCGA-A7-A0CH-11A-32D-A092-01 f1e65f76-7c0e-436a-b031-93d0b9fd2c4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G09_729722.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-11A TCGA-A7-A0CH-11A-32D-A092-01 f1e65f76-7c0e-436a-b031-93d0b9fd2c4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G09_729722.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-11A TCGA-A7-A0CH-11A-32D-A092-01 f1e65f76-7c0e-436a-b031-93d0b9fd2c4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G09_729722.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-11A TCGA-A7-A0CH-11A-32D-A093-05 b2847df8-495a-48e4-9f73-e9f493a47e7e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-11A TCGA-A7-A0CH-11A-32D-A10E-09 2cb48f44-9102-4229-a119-82c6bd997b16 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-11A TCGA-A7-A0CH-11A-32D-A10Q-05 2225ccba-d627-451d-9b45-500c9915061f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-11A TCGA-A7-A0CH-11A-32D-A10Q-05 2225ccba-d627-451d-9b45-500c9915061f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0/6005486011_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0 47 07-NOV-11 04.04.17.697000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-11A TCGA-A7-A0CH-11A-32D-A10Q-05 2225ccba-d627-451d-9b45-500c9915061f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0/6005486011_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0 47 07-NOV-11 04.04.17.697000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-11A TCGA-A7-A0CH-11A-32D-A10Q-05 2225ccba-d627-451d-9b45-500c9915061f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.1.1.0/jhu-usc.edu_BRCA.HumanMethylation450.1.lvl-2.TCGA-A7-A0CH-11A-32D-A10Q-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.1.1.0 47 07-NOV-11 04.38.19.253000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-11A TCGA-A7-A0CH-11A-32D-A10Q-05 2225ccba-d627-451d-9b45-500c9915061f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.1.1.0/jhu-usc.edu_BRCA.HumanMethylation450.1.lvl-3.TCGA-A7-A0CH-11A-32D-A10Q-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.1.1.0 47 07-NOV-11 05.34.09.862000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-11A TCGA-A7-A0CH-11A-32R-A089-07 a4b19504-8f04-48db-b88b-d76b8b3c3881 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-11A TCGA-A7-A0CH-11A-32R-A089-07 a4b19504-8f04-48db-b88b-d76b8b3c3881 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012673_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 47 02-NOV-10 12.30.07.283000000 AM TCGA-A7-A0CH TCGA-A7-A0CH-11A TCGA-A7-A0CH-11A-32R-A089-07 a4b19504-8f04-48db-b88b-d76b8b3c3881 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012673_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 47 02-NOV-10 12.25.38.097000000 AM TCGA-A7-A0CH TCGA-A7-A0CH-11A TCGA-A7-A0CH-11A-32R-A089-07 a4b19504-8f04-48db-b88b-d76b8b3c3881 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012673_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 47 02-NOV-10 12.26.20.805000000 AM TCGA-A7-A0CH TCGA-A7-A0CH-11A TCGA-A7-A0CH-11A-32W-A10F-09 bc9cbe8e-4bbe-494a-aae9-f0feab9a86f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-11A TCGA-A7-A0CH-11A-32W-A10F-09 bc9cbe8e-4bbe-494a-aae9-f0feab9a86f6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A7-A0CH TCGA-A7-A0CH-11A TCGA-A7-A0CH-11A-32X-A10F-09 c182a0f8-7f45-4fa3-8f27-a6eeee58380b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21D-A00Y-05 c01a10e4-8207-47a1-b3d1-326c5915ad1c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21D-A00Y-05 c01a10e4-8207-47a1-b3d1-326c5915ad1c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A7-A0CJ-01A-21D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21D-A00Y-05 c01a10e4-8207-47a1-b3d1-326c5915ad1c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A7-A0CJ-01A-21D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21D-A00Y-05 c01a10e4-8207-47a1-b3d1-326c5915ad1c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A7-A0CJ-01A-21D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21D-A011-01 363b439f-0335-48f6-838b-e603c24ff1e3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21D-A011-01 363b439f-0335-48f6-838b-e603c24ff1e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E12_628318.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21D-A011-01 363b439f-0335-48f6-838b-e603c24ff1e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E12_628318.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21D-A011-01 363b439f-0335-48f6-838b-e603c24ff1e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E12_628318.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21D-A011-01 363b439f-0335-48f6-838b-e603c24ff1e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E12_628318.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21D-A011-01 363b439f-0335-48f6-838b-e603c24ff1e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E12_628318.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21D-A011-01 363b439f-0335-48f6-838b-e603c24ff1e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E12_628318.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21D-A011-01 363b439f-0335-48f6-838b-e603c24ff1e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E12_628318.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21D-A011-01 363b439f-0335-48f6-838b-e603c24ff1e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E12_628318.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21D-A015-09 803b72b7-d3c5-44ab-88e1-ebaee765c0d3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21D-A016-08 3532c2eb-1bda-4155-afef-6464eef61959 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21D-A068-02 d9cd9da5-1095-4f9b-856e-734e1193c1f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21R-A00Z-07 62de6863-5d60-473c-8e13-e300b0640ed7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21R-A00Z-07 62de6863-5d60-473c-8e13-e300b0640ed7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011844_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21R-A00Z-07 62de6863-5d60-473c-8e13-e300b0640ed7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011844_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21R-A00Z-07 62de6863-5d60-473c-8e13-e300b0640ed7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011844_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21R-A00Z-07 62de6863-5d60-473c-8e13-e300b0640ed7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446111.TCGA-A7-A0CJ-01A-21R-A00Z-07.110824_UNC13-SN749_0098_AC03YVABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21R-A00Z-07 62de6863-5d60-473c-8e13-e300b0640ed7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446136.TCGA-A7-A0CJ-01A-21R-A00Z-07.110824_UNC13-SN749_0098_AC03YVABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21R-A00Z-07 62de6863-5d60-473c-8e13-e300b0640ed7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446254.TCGA-A7-A0CJ-01A-21R-A00Z-07.110824_UNC13-SN749_0098_AC03YVABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21R-A010-13 08cb49e7-974d-4d74-820c-f2db88699e12 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21R-A010-13 08cb49e7-974d-4d74-820c-f2db88699e12 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A7-A0CJ-01A-21R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21R-A010-13 08cb49e7-974d-4d74-820c-f2db88699e12 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A7-A0CJ-01A-21R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21W-A019-09 c9f6a65e-ae20-410d-a397-34aef0818ff3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21W-A019-09 c9f6a65e-ae20-410d-a397-34aef0818ff3 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21W-A020-08 0cfb8235-c19f-4c02-9297-b7c5d686679d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21X-A023-09 1bbcd292-1981-4dbc-9fae-44c0b174d152 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-01A TCGA-A7-A0CJ-01A-21X-A024-08 993eee26-3dd4-4161-bc0a-61b4093accc0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-10A TCGA-A7-A0CJ-10A-01D-A012-01 cf3fdad6-0327-4212-8288-41be3084100b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-10A TCGA-A7-A0CJ-10A-01D-A012-01 cf3fdad6-0327-4212-8288-41be3084100b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B08_628260.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A7-A0CJ TCGA-A7-A0CJ-10A TCGA-A7-A0CJ-10A-01D-A012-01 cf3fdad6-0327-4212-8288-41be3084100b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B08_628260.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-10A TCGA-A7-A0CJ-10A-01D-A012-01 cf3fdad6-0327-4212-8288-41be3084100b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B08_628260.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-10A TCGA-A7-A0CJ-10A-01D-A012-01 cf3fdad6-0327-4212-8288-41be3084100b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B08_628260.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-10A TCGA-A7-A0CJ-10A-01D-A012-01 cf3fdad6-0327-4212-8288-41be3084100b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B08_628260.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-10A TCGA-A7-A0CJ-10A-01D-A012-01 cf3fdad6-0327-4212-8288-41be3084100b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B08_628260.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-10A TCGA-A7-A0CJ-10A-01D-A012-01 cf3fdad6-0327-4212-8288-41be3084100b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B08_628260.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-10A TCGA-A7-A0CJ-10A-01D-A012-01 cf3fdad6-0327-4212-8288-41be3084100b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B08_628260.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-10A TCGA-A7-A0CJ-10A-01D-A017-09 ab9684ec-d551-4f55-a274-117833f0f9eb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-10A TCGA-A7-A0CJ-10A-01D-A018-08 f662a353-e7fa-42ce-b68b-03e7e6054c74 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-10A TCGA-A7-A0CJ-10A-01D-A069-02 bde9fb7c-1cf6-4842-bba9-19fffc235ea6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-10A TCGA-A7-A0CJ-10A-01W-A021-09 0d9abb69-24bb-473c-aec6-cfabee1d8ff5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-10A TCGA-A7-A0CJ-10A-01W-A021-09 0d9abb69-24bb-473c-aec6-cfabee1d8ff5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-10A TCGA-A7-A0CJ-10A-01W-A022-08 94621536-a9dd-4fe1-83e4-2fefcdef689a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-10A TCGA-A7-A0CJ-10A-01X-A025-09 bba20e22-2656-4cc6-aea9-6e2e42b94644 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0CJ TCGA-A7-A0CJ-10A TCGA-A7-A0CJ-10A-01X-A026-08 30192b39-0a26-476f-b942-d23d89f9a202 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0CJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31D-A058-05 c9cdc72d-1229-4117-bbbe-9d0ac0f9d0d4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31D-A059-01 3338d4d6-755c-446a-ae7f-7da3bfaf68af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31D-A059-01 3338d4d6-755c-446a-ae7f-7da3bfaf68af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H07_697072.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31D-A059-01 3338d4d6-755c-446a-ae7f-7da3bfaf68af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H07_697072.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31D-A059-01 3338d4d6-755c-446a-ae7f-7da3bfaf68af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H07_697072.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31D-A059-01 3338d4d6-755c-446a-ae7f-7da3bfaf68af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H07_697072.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31D-A059-01 3338d4d6-755c-446a-ae7f-7da3bfaf68af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H07_697072.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31D-A059-01 3338d4d6-755c-446a-ae7f-7da3bfaf68af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H07_697072.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31D-A059-01 3338d4d6-755c-446a-ae7f-7da3bfaf68af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H07_697072.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31D-A059-01 3338d4d6-755c-446a-ae7f-7da3bfaf68af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H07_697072.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31D-A060-02 7cd9ac40-f6b5-4c68-9d9a-d57845b812db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31D-A074-08 a70c9c7e-8e86-49f6-aae7-dcef22b7e29a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31D-A075-09 df6a1c44-8ada-4624-8dce-2ad55d4e7c6a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31D-A10P-05 9120c30f-cfdf-4b5e-87cb-715bf3ad554f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31D-A10P-05 9120c30f-cfdf-4b5e-87cb-715bf3ad554f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486021_R05C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31D-A10P-05 9120c30f-cfdf-4b5e-87cb-715bf3ad554f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486021_R05C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31D-A10P-05 9120c30f-cfdf-4b5e-87cb-715bf3ad554f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-A7-A0D9-01A-31D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31D-A10P-05 9120c30f-cfdf-4b5e-87cb-715bf3ad554f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-A7-A0D9-01A-31D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31R-A056-07 755912f4-6725-4b7b-84b1-518c7529a176 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31R-A056-07 755912f4-6725-4b7b-84b1-518c7529a176 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012508_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31R-A056-07 755912f4-6725-4b7b-84b1-518c7529a176 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012508_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31R-A056-07 755912f4-6725-4b7b-84b1-518c7529a176 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012508_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31R-A056-07 755912f4-6725-4b7b-84b1-518c7529a176 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480259.TCGA-A7-A0D9-01A-31R-A056-07.110318_SN749_0046_AB039FABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31R-A056-07 755912f4-6725-4b7b-84b1-518c7529a176 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480276.TCGA-A7-A0D9-01A-31R-A056-07.110318_SN749_0046_AB039FABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31R-A056-07 755912f4-6725-4b7b-84b1-518c7529a176 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480306.TCGA-A7-A0D9-01A-31R-A056-07.110318_SN749_0046_AB039FABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31R-A057-13 43fe380c-9fd5-493c-97f6-dd46121221f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31R-A057-13 43fe380c-9fd5-493c-97f6-dd46121221f4 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A7-A0D9-01A-31R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31R-A057-13 43fe380c-9fd5-493c-97f6-dd46121221f4 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A7-A0D9-01A-31R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31W-A070-08 bbfe2070-d416-410b-93bd-258def5f58ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31W-A071-09 c730a631-f3d0-4d7d-945a-b65c7a5a4d58 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31W-A071-09 c730a631-f3d0-4d7d-945a-b65c7a5a4d58 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31X-A072-08 db0befbd-e8a0-4f5b-8083-9571579d4174 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-01A TCGA-A7-A0D9-01A-31X-A073-09 dfada4f8-ca2b-45f1-8f17-e367be468e22 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-10A TCGA-A7-A0D9-10A-01D-A059-01 f771441a-a6ff-4228-9f24-86aacc7cd969 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-10A TCGA-A7-A0D9-10A-01D-A059-01 f771441a-a6ff-4228-9f24-86aacc7cd969 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E10_697070.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-A7-A0D9 TCGA-A7-A0D9-10A TCGA-A7-A0D9-10A-01D-A059-01 f771441a-a6ff-4228-9f24-86aacc7cd969 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E10_697070.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-10A TCGA-A7-A0D9-10A-01D-A059-01 f771441a-a6ff-4228-9f24-86aacc7cd969 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E10_697070.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-10A TCGA-A7-A0D9-10A-01D-A059-01 f771441a-a6ff-4228-9f24-86aacc7cd969 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E10_697070.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-10A TCGA-A7-A0D9-10A-01D-A059-01 f771441a-a6ff-4228-9f24-86aacc7cd969 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E10_697070.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-10A TCGA-A7-A0D9-10A-01D-A059-01 f771441a-a6ff-4228-9f24-86aacc7cd969 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E10_697070.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-10A TCGA-A7-A0D9-10A-01D-A059-01 f771441a-a6ff-4228-9f24-86aacc7cd969 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E10_697070.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-10A TCGA-A7-A0D9-10A-01D-A059-01 f771441a-a6ff-4228-9f24-86aacc7cd969 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E10_697070.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-10A TCGA-A7-A0D9-10A-01D-A060-02 34d29129-a82c-477f-8d08-dc972d08ac45 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-10A TCGA-A7-A0D9-10A-01D-A074-08 28b83811-0688-43b5-abcf-90feac11ec1d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-10A TCGA-A7-A0D9-10A-01D-A075-09 1d3c329b-676e-4418-baab-4bde65ff0b32 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-10A TCGA-A7-A0D9-10A-01W-A070-08 6770ad52-cd09-4b72-ae5d-9dadba524381 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-10A TCGA-A7-A0D9-10A-01W-A071-09 f671adda-19b8-4329-85a0-e25c344a92db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-10A TCGA-A7-A0D9-10A-01W-A071-09 f671adda-19b8-4329-85a0-e25c344a92db Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-10A TCGA-A7-A0D9-10A-01X-A072-08 933a8e25-2335-4385-9f71-047123373b91 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-10A TCGA-A7-A0D9-10A-01X-A073-09 09d04612-93e0-4d78-8d01-edcb5820d2fb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53D-A091-02 82553a0a-b330-4b17-8d42-85f1e59dd42c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53D-A092-01 d59e105f-7c7a-40b1-a4ad-3307b1b746cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53D-A092-01 d59e105f-7c7a-40b1-a4ad-3307b1b746cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F12_729600.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53D-A092-01 d59e105f-7c7a-40b1-a4ad-3307b1b746cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F12_729600.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53D-A092-01 d59e105f-7c7a-40b1-a4ad-3307b1b746cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F12_729600.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53D-A092-01 d59e105f-7c7a-40b1-a4ad-3307b1b746cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F12_729600.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53D-A092-01 d59e105f-7c7a-40b1-a4ad-3307b1b746cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F12_729600.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53D-A092-01 d59e105f-7c7a-40b1-a4ad-3307b1b746cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F12_729600.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53D-A092-01 d59e105f-7c7a-40b1-a4ad-3307b1b746cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F12_729600.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53D-A092-01 d59e105f-7c7a-40b1-a4ad-3307b1b746cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F12_729600.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53D-A093-05 b057b385-ff1a-4541-bd4b-e5cff6dd190f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53D-A100-09 5504ab0c-154e-44a5-b3b3-d50d25d6b7c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53D-A10Q-05 b3cc6d8a-5be2-49ec-b527-09272ac6f8b7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53D-A10Q-05 b3cc6d8a-5be2-49ec-b527-09272ac6f8b7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486013_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53D-A10Q-05 b3cc6d8a-5be2-49ec-b527-09272ac6f8b7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486013_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53D-A10Q-05 b3cc6d8a-5be2-49ec-b527-09272ac6f8b7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-A7-A0D9-11A-53D-A10Q-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53D-A10Q-05 b3cc6d8a-5be2-49ec-b527-09272ac6f8b7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-A7-A0D9-11A-53D-A10Q-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53R-A089-07 fc5bb351-c5f7-4d8c-850c-13e69e13e04d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53R-A089-07 fc5bb351-c5f7-4d8c-850c-13e69e13e04d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012677_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 61 02-NOV-10 12.30.07.283000000 AM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53R-A089-07 fc5bb351-c5f7-4d8c-850c-13e69e13e04d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012677_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 61 02-NOV-10 12.25.38.097000000 AM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53R-A089-07 fc5bb351-c5f7-4d8c-850c-13e69e13e04d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012677_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 61 02-NOV-10 12.26.20.805000000 AM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53R-A089-07 fc5bb351-c5f7-4d8c-850c-13e69e13e04d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_830477.TCGA-A7-A0D9-11A-53R-A089-07.110909_UNC9-SN296_0240_BD0DDBABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53R-A089-07 fc5bb351-c5f7-4d8c-850c-13e69e13e04d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_830482.TCGA-A7-A0D9-11A-53R-A089-07.110909_UNC9-SN296_0240_BD0DDBABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53R-A089-07 fc5bb351-c5f7-4d8c-850c-13e69e13e04d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_830688.TCGA-A7-A0D9-11A-53R-A089-07.110909_UNC9-SN296_0240_BD0DDBABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53R-A090-13 41a133c8-4b59-43a3-8969-d9ef72cc3f83 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53R-A090-13 41a133c8-4b59-43a3-8969-d9ef72cc3f83 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A7-A0D9-11A-53R-A090-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53R-A090-13 41a133c8-4b59-43a3-8969-d9ef72cc3f83 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A7-A0D9-11A-53R-A090-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53W-A100-09 f539c3f0-3eb3-4279-8979-d81cb7db8e58 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53W-A100-09 f539c3f0-3eb3-4279-8979-d81cb7db8e58 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-A7-A0D9 TCGA-A7-A0D9-11A TCGA-A7-A0D9-11A-53X-A100-09 34174648-2c03-42f9-85d9-2c89e5b63093 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0D9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31D-A10X-02 013b8901-2f00-46f4-b864-0a5e7d4efa6c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31D-A10Y-09 878337fe-9f41-44f5-9760-3977e7d75308 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31D-A10Y-09 878337fe-9f41-44f5-9760-3977e7d75308 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31D-A111-01 91c8c373-e923-4e7f-b8b3-2417e92760c7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31D-A111-01 91c8c373-e923-4e7f-b8b3-2417e92760c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D05_735100.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31D-A111-01 91c8c373-e923-4e7f-b8b3-2417e92760c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D05_735100.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31D-A111-01 91c8c373-e923-4e7f-b8b3-2417e92760c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D05_735100.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31D-A111-01 91c8c373-e923-4e7f-b8b3-2417e92760c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D05_735100.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31D-A111-01 91c8c373-e923-4e7f-b8b3-2417e92760c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D05_735100.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31D-A111-01 91c8c373-e923-4e7f-b8b3-2417e92760c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D05_735100.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31D-A111-01 91c8c373-e923-4e7f-b8b3-2417e92760c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D05_735100.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31D-A111-01 91c8c373-e923-4e7f-b8b3-2417e92760c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D05_735100.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31D-A112-05 dd1d7840-21e5-4eb8-9795-91d0659cf8d9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31D-A112-05 dd1d7840-21e5-4eb8-9795-91d0659cf8d9 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-A7-A0DA-01A-31D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31D-A112-05 dd1d7840-21e5-4eb8-9795-91d0659cf8d9 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-A7-A0DA-01A-31D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31D-A112-05 dd1d7840-21e5-4eb8-9795-91d0659cf8d9 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-A7-A0DA-01A-31D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31R-A114-13 c8638f56-52c7-4aab-9a57-f2318f44df97 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31R-A114-13 c8638f56-52c7-4aab-9a57-f2318f44df97 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A7-A0DA-01A-31R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31R-A114-13 c8638f56-52c7-4aab-9a57-f2318f44df97 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A7-A0DA-01A-31R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31R-A115-07 9d04c180-7c23-490e-92cf-c018629b8b7f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31R-A115-07 9d04c180-7c23-490e-92cf-c018629b8b7f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012820_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31R-A115-07 9d04c180-7c23-490e-92cf-c018629b8b7f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012820_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31R-A115-07 9d04c180-7c23-490e-92cf-c018629b8b7f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012820_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31R-A115-07 9d04c180-7c23-490e-92cf-c018629b8b7f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_447886.TCGA-A7-A0DA-01A-31R-A115-07.110620_UNC11-SN627_0109_AD0CNFABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31R-A115-07 9d04c180-7c23-490e-92cf-c018629b8b7f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_447894.TCGA-A7-A0DA-01A-31R-A115-07.110620_UNC11-SN627_0109_AD0CNFABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31R-A115-07 9d04c180-7c23-490e-92cf-c018629b8b7f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_447941.TCGA-A7-A0DA-01A-31R-A115-07.110620_UNC11-SN627_0109_AD0CNFABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-01A TCGA-A7-A0DA-01A-31W-A12T-09 8b368315-4ed7-432f-b3e5-8bff48b32293 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-10A TCGA-A7-A0DA-10A-01D-A10Z-02 31f208e7-dfcd-431e-9a78-765befdc6ccf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-10A TCGA-A7-A0DA-10A-01D-A110-09 47723567-39d1-40e9-a8ea-1bf9548db03e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-10A TCGA-A7-A0DA-10A-01D-A110-09 47723567-39d1-40e9-a8ea-1bf9548db03e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-10A TCGA-A7-A0DA-10A-01D-A113-01 72c79f9e-a770-4a6c-a0a4-655ad717463c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-10A TCGA-A7-A0DA-10A-01D-A113-01 72c79f9e-a770-4a6c-a0a4-655ad717463c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C03_735192.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-A7-A0DA TCGA-A7-A0DA-10A TCGA-A7-A0DA-10A-01D-A113-01 72c79f9e-a770-4a6c-a0a4-655ad717463c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C03_735192.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-10A TCGA-A7-A0DA-10A-01D-A113-01 72c79f9e-a770-4a6c-a0a4-655ad717463c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C03_735192.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-10A TCGA-A7-A0DA-10A-01D-A113-01 72c79f9e-a770-4a6c-a0a4-655ad717463c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C03_735192.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-10A TCGA-A7-A0DA-10A-01D-A113-01 72c79f9e-a770-4a6c-a0a4-655ad717463c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C03_735192.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-10A TCGA-A7-A0DA-10A-01D-A113-01 72c79f9e-a770-4a6c-a0a4-655ad717463c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C03_735192.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-10A TCGA-A7-A0DA-10A-01D-A113-01 72c79f9e-a770-4a6c-a0a4-655ad717463c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C03_735192.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-10A TCGA-A7-A0DA-10A-01D-A113-01 72c79f9e-a770-4a6c-a0a4-655ad717463c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C03_735192.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-A7-A0DA TCGA-A7-A0DA-10A TCGA-A7-A0DA-10A-01W-A12U-09 3ad9e1b0-8de8-44b5-92e6-5d70a70070cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11D-A00Y-05 6334a9c8-09e1-4a3e-afe5-e0b6b95aec02 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11D-A00Y-05 6334a9c8-09e1-4a3e-afe5-e0b6b95aec02 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A7-A0DB-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11D-A00Y-05 6334a9c8-09e1-4a3e-afe5-e0b6b95aec02 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A7-A0DB-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11D-A00Y-05 6334a9c8-09e1-4a3e-afe5-e0b6b95aec02 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A7-A0DB-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11D-A011-01 8428a325-211e-4a7d-99df-ef5cf6e57c77 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11D-A011-01 8428a325-211e-4a7d-99df-ef5cf6e57c77 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B02_628292.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11D-A011-01 8428a325-211e-4a7d-99df-ef5cf6e57c77 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B02_628292.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11D-A011-01 8428a325-211e-4a7d-99df-ef5cf6e57c77 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B02_628292.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11D-A011-01 8428a325-211e-4a7d-99df-ef5cf6e57c77 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B02_628292.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11D-A011-01 8428a325-211e-4a7d-99df-ef5cf6e57c77 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B02_628292.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11D-A011-01 8428a325-211e-4a7d-99df-ef5cf6e57c77 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B02_628292.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11D-A011-01 8428a325-211e-4a7d-99df-ef5cf6e57c77 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B02_628292.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11D-A011-01 8428a325-211e-4a7d-99df-ef5cf6e57c77 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B02_628292.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11D-A015-09 2606b791-6378-442c-8606-2116ca21c8d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11D-A016-08 b114dc47-e736-4058-8bac-f548ce93de2d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11R-A00Z-07 0c74bde4-0411-4cfd-9c60-d8eaf8a09629 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11R-A00Z-07 0c74bde4-0411-4cfd-9c60-d8eaf8a09629 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011895_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11R-A00Z-07 0c74bde4-0411-4cfd-9c60-d8eaf8a09629 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011895_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11R-A00Z-07 0c74bde4-0411-4cfd-9c60-d8eaf8a09629 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011895_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11R-A00Z-07 0c74bde4-0411-4cfd-9c60-d8eaf8a09629 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593331.TCGA-A7-A0DB-01A-11R-A00Z-07.110228_UNC10-SN254_0198_BB041RABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11R-A00Z-07 0c74bde4-0411-4cfd-9c60-d8eaf8a09629 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593334.TCGA-A7-A0DB-01A-11R-A00Z-07.110228_UNC10-SN254_0198_BB041RABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11R-A00Z-07 0c74bde4-0411-4cfd-9c60-d8eaf8a09629 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593352.TCGA-A7-A0DB-01A-11R-A00Z-07.110228_UNC10-SN254_0198_BB041RABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11R-A010-13 5f94eb07-ab3f-4241-8a93-0413c8facd7c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11R-A010-13 5f94eb07-ab3f-4241-8a93-0413c8facd7c miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A7-A0DB-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11R-A010-13 5f94eb07-ab3f-4241-8a93-0413c8facd7c miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A7-A0DB-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11W-A019-09 eb61fb8b-1b5b-4cfd-a979-cf9e25481ae2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11W-A019-09 eb61fb8b-1b5b-4cfd-a979-cf9e25481ae2 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11W-A020-08 a569e6da-56d9-48fa-9d75-410a559e6725 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11X-A023-09 1f17b9b7-c7b7-4cce-b813-f7546c726896 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-01A TCGA-A7-A0DB-01A-11X-A024-08 5304bac9-856d-425f-b0e2-6850e5d55ce7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-10A TCGA-A7-A0DB-10A-01D-A012-01 db294d44-4927-4c6c-a10f-6c3254aed21a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-10A TCGA-A7-A0DB-10A-01D-A012-01 db294d44-4927-4c6c-a10f-6c3254aed21a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F09_628240.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A7-A0DB TCGA-A7-A0DB-10A TCGA-A7-A0DB-10A-01D-A012-01 db294d44-4927-4c6c-a10f-6c3254aed21a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F09_628240.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-10A TCGA-A7-A0DB-10A-01D-A012-01 db294d44-4927-4c6c-a10f-6c3254aed21a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F09_628240.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-10A TCGA-A7-A0DB-10A-01D-A012-01 db294d44-4927-4c6c-a10f-6c3254aed21a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F09_628240.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-10A TCGA-A7-A0DB-10A-01D-A012-01 db294d44-4927-4c6c-a10f-6c3254aed21a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F09_628240.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-10A TCGA-A7-A0DB-10A-01D-A012-01 db294d44-4927-4c6c-a10f-6c3254aed21a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F09_628240.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-10A TCGA-A7-A0DB-10A-01D-A012-01 db294d44-4927-4c6c-a10f-6c3254aed21a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F09_628240.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-10A TCGA-A7-A0DB-10A-01D-A012-01 db294d44-4927-4c6c-a10f-6c3254aed21a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F09_628240.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-10A TCGA-A7-A0DB-10A-01D-A017-09 67e420aa-1f55-4516-905e-6feec130cd9b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-10A TCGA-A7-A0DB-10A-01D-A018-08 f05e3ca1-6950-4390-ae4e-fe1c2ca410db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-10A TCGA-A7-A0DB-10A-01W-A021-09 3e6c153e-7921-4d16-8d7e-157736e3aa65 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-10A TCGA-A7-A0DB-10A-01W-A021-09 3e6c153e-7921-4d16-8d7e-157736e3aa65 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-10A TCGA-A7-A0DB-10A-01W-A022-08 671066c1-56aa-4d97-9832-c4cd29aa6057 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-10A TCGA-A7-A0DB-10A-01X-A025-09 ca7fa812-2dd6-4f8f-be49-07affd58f831 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-10A TCGA-A7-A0DB-10A-01X-A026-08 0e4b4a82-57f1-4b8d-bc9c-fdc381437614 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33D-A091-02 3a1cef18-0116-4cd1-9a20-646cdc9d3022 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33D-A092-01 b6e2f21b-1b95-4bff-a3aa-3883562c958a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33D-A092-01 b6e2f21b-1b95-4bff-a3aa-3883562c958a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F05_729708.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33D-A092-01 b6e2f21b-1b95-4bff-a3aa-3883562c958a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F05_729708.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33D-A092-01 b6e2f21b-1b95-4bff-a3aa-3883562c958a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F05_729708.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33D-A092-01 b6e2f21b-1b95-4bff-a3aa-3883562c958a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F05_729708.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33D-A092-01 b6e2f21b-1b95-4bff-a3aa-3883562c958a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F05_729708.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33D-A092-01 b6e2f21b-1b95-4bff-a3aa-3883562c958a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F05_729708.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33D-A092-01 b6e2f21b-1b95-4bff-a3aa-3883562c958a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F05_729708.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33D-A092-01 b6e2f21b-1b95-4bff-a3aa-3883562c958a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F05_729708.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33D-A093-05 248bb641-7eef-46f5-ae81-5e9e626eccc9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33D-A093-05 248bb641-7eef-46f5-ae81-5e9e626eccc9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0/6005486025_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0 47 07-NOV-11 04.04.17.697000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33D-A093-05 248bb641-7eef-46f5-ae81-5e9e626eccc9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0/6005486025_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0 47 07-NOV-11 04.04.17.697000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33D-A093-05 248bb641-7eef-46f5-ae81-5e9e626eccc9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.1.1.0/jhu-usc.edu_BRCA.HumanMethylation450.1.lvl-2.TCGA-A7-A0DB-11A-33D-A093-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.1.1.0 47 07-NOV-11 04.38.19.253000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33D-A093-05 248bb641-7eef-46f5-ae81-5e9e626eccc9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.1.1.0/jhu-usc.edu_BRCA.HumanMethylation450.1.lvl-3.TCGA-A7-A0DB-11A-33D-A093-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.1.1.0 47 07-NOV-11 05.34.09.862000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33D-A100-09 2e82d800-d0b7-4c0c-9271-9ac0852b6daa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33R-A089-07 3f3bdfbb-3490-42e4-9511-9df4b8a126a3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33R-A089-07 3f3bdfbb-3490-42e4-9511-9df4b8a126a3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012636_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 47 02-NOV-10 12.30.07.283000000 AM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33R-A089-07 3f3bdfbb-3490-42e4-9511-9df4b8a126a3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012636_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 47 02-NOV-10 12.25.38.097000000 AM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33R-A089-07 3f3bdfbb-3490-42e4-9511-9df4b8a126a3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012636_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 47 02-NOV-10 12.26.20.805000000 AM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33R-A089-07 3f3bdfbb-3490-42e4-9511-9df4b8a126a3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_830376.TCGA-A7-A0DB-11A-33R-A089-07.110909_UNC9-SN296_0240_BD0DDBABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33R-A089-07 3f3bdfbb-3490-42e4-9511-9df4b8a126a3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_830397.TCGA-A7-A0DB-11A-33R-A089-07.110909_UNC9-SN296_0240_BD0DDBABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33R-A089-07 3f3bdfbb-3490-42e4-9511-9df4b8a126a3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_830591.TCGA-A7-A0DB-11A-33R-A089-07.110909_UNC9-SN296_0240_BD0DDBABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33R-A090-13 9458ec78-c1cd-45a2-b718-955ad1237cac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33R-A090-13 9458ec78-c1cd-45a2-b718-955ad1237cac miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A7-A0DB-11A-33R-A090-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33R-A090-13 9458ec78-c1cd-45a2-b718-955ad1237cac miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A7-A0DB-11A-33R-A090-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33W-A100-09 edde29ab-1a7a-4be0-870c-e4256460754e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33W-A100-09 edde29ab-1a7a-4be0-870c-e4256460754e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A7-A0DB TCGA-A7-A0DB-11A TCGA-A7-A0DB-11A-33X-A100-09 f44e6b5d-ecef-4424-b160-45c5f0d76939 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11D-A00Y-05 31f6df9c-6cc0-44ae-8eee-9d9cb70c1c43 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11D-A00Y-05 31f6df9c-6cc0-44ae-8eee-9d9cb70c1c43 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A7-A0DC-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11D-A00Y-05 31f6df9c-6cc0-44ae-8eee-9d9cb70c1c43 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A7-A0DC-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11D-A00Y-05 31f6df9c-6cc0-44ae-8eee-9d9cb70c1c43 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A7-A0DC-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11D-A011-01 5bfd4ac0-78fb-4ee5-ac75-7e20a268685c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11D-A011-01 5bfd4ac0-78fb-4ee5-ac75-7e20a268685c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H08_628250.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11D-A011-01 5bfd4ac0-78fb-4ee5-ac75-7e20a268685c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H08_628250.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11D-A011-01 5bfd4ac0-78fb-4ee5-ac75-7e20a268685c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H08_628250.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11D-A011-01 5bfd4ac0-78fb-4ee5-ac75-7e20a268685c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H08_628250.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11D-A011-01 5bfd4ac0-78fb-4ee5-ac75-7e20a268685c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H08_628250.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11D-A011-01 5bfd4ac0-78fb-4ee5-ac75-7e20a268685c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H08_628250.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11D-A011-01 5bfd4ac0-78fb-4ee5-ac75-7e20a268685c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H08_628250.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11D-A011-01 5bfd4ac0-78fb-4ee5-ac75-7e20a268685c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H08_628250.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11D-A015-09 93df719d-eac1-4096-9ed9-fba96dc3d8be Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11D-A016-08 ecf79093-52de-4f73-a040-dc2d341a2933 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11D-A068-02 595df3e9-2aac-4efb-9761-4f63830e4e99 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11R-A00Z-07 43bbd0f7-87d7-472f-ad3e-e016df3d5d89 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11R-A00Z-07 43bbd0f7-87d7-472f-ad3e-e016df3d5d89 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012043_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11R-A00Z-07 43bbd0f7-87d7-472f-ad3e-e016df3d5d89 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012043_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11R-A00Z-07 43bbd0f7-87d7-472f-ad3e-e016df3d5d89 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012043_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11R-A00Z-07 43bbd0f7-87d7-472f-ad3e-e016df3d5d89 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_660163.TCGA-A7-A0DC-01A-11R-A00Z-07.110308_UNC9-SN296_0158_BB042UABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11R-A00Z-07 43bbd0f7-87d7-472f-ad3e-e016df3d5d89 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_660223.TCGA-A7-A0DC-01A-11R-A00Z-07.110308_UNC9-SN296_0158_BB042UABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11R-A00Z-07 43bbd0f7-87d7-472f-ad3e-e016df3d5d89 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_660319.TCGA-A7-A0DC-01A-11R-A00Z-07.110308_UNC9-SN296_0158_BB042UABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11R-A010-13 129c462f-bd7b-4441-937e-8ed3cdb1b3f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11R-A010-13 129c462f-bd7b-4441-937e-8ed3cdb1b3f6 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A7-A0DC-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11R-A010-13 129c462f-bd7b-4441-937e-8ed3cdb1b3f6 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A7-A0DC-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11W-A019-09 3c481534-6a8e-4cea-9f7c-83c9c95b7c39 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11W-A020-08 e85c72f6-1f9a-4295-b764-e646bbbf05c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11X-A023-09 bdb2fd2c-93eb-4452-b6ab-ba2395c01249 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-01A TCGA-A7-A0DC-01A-11X-A024-08 a2ba27dd-cee5-47bd-9bc9-ff5cfca5c8a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-10A TCGA-A7-A0DC-10A-01D-A012-01 86d56f96-b1a5-430c-ae68-f3e0547d959f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-10A TCGA-A7-A0DC-10A-01D-A012-01 86d56f96-b1a5-430c-ae68-f3e0547d959f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H11_628226.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-10A TCGA-A7-A0DC-10A-01D-A012-01 86d56f96-b1a5-430c-ae68-f3e0547d959f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H11_628226.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-10A TCGA-A7-A0DC-10A-01D-A012-01 86d56f96-b1a5-430c-ae68-f3e0547d959f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H11_628226.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-10A TCGA-A7-A0DC-10A-01D-A012-01 86d56f96-b1a5-430c-ae68-f3e0547d959f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H11_628226.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-10A TCGA-A7-A0DC-10A-01D-A012-01 86d56f96-b1a5-430c-ae68-f3e0547d959f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H11_628226.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-10A TCGA-A7-A0DC-10A-01D-A012-01 86d56f96-b1a5-430c-ae68-f3e0547d959f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H11_628226.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-10A TCGA-A7-A0DC-10A-01D-A012-01 86d56f96-b1a5-430c-ae68-f3e0547d959f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H11_628226.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-10A TCGA-A7-A0DC-10A-01D-A012-01 86d56f96-b1a5-430c-ae68-f3e0547d959f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H11_628226.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-10A TCGA-A7-A0DC-10A-01D-A017-09 7680b14c-5e1c-41ba-a278-86c34c6c182e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-10A TCGA-A7-A0DC-10A-01D-A018-08 88aaf403-112d-415a-b175-ec260577d4f1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-10A TCGA-A7-A0DC-10A-01D-A069-02 94eaff93-a6cf-4d0a-9413-ba1d16beb4bb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-10A TCGA-A7-A0DC-10A-01W-A021-09 954e1ce3-1987-4904-bdc4-54ab6486f671 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-10A TCGA-A7-A0DC-10A-01W-A022-08 fb92cfc9-5206-4619-94f5-5f699cb0960f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-10A TCGA-A7-A0DC-10A-01X-A025-09 9e5d8dab-ccaa-41b2-81d8-f1d28a027156 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-10A TCGA-A7-A0DC-10A-01X-A026-08 1359d258-7be3-4750-b776-b794ac2c7706 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41D-A091-02 5bc539a0-e055-4d80-a6d0-b200d4489cbe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41D-A092-01 3480e631-b2bc-479a-9701-8da2ce30bd96 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41D-A092-01 3480e631-b2bc-479a-9701-8da2ce30bd96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F07_729628.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41D-A092-01 3480e631-b2bc-479a-9701-8da2ce30bd96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F07_729628.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41D-A092-01 3480e631-b2bc-479a-9701-8da2ce30bd96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F07_729628.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41D-A092-01 3480e631-b2bc-479a-9701-8da2ce30bd96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F07_729628.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41D-A092-01 3480e631-b2bc-479a-9701-8da2ce30bd96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F07_729628.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41D-A092-01 3480e631-b2bc-479a-9701-8da2ce30bd96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F07_729628.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41D-A092-01 3480e631-b2bc-479a-9701-8da2ce30bd96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F07_729628.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41D-A092-01 3480e631-b2bc-479a-9701-8da2ce30bd96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F07_729628.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41D-A093-05 cc1f28ba-f095-4859-b8c6-920fb9f50d65 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41D-A100-09 a9b112b9-e18b-4f7e-8bf4-132e41a7c568 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41D-A10Q-05 36da685d-df49-495c-9200-28d5ee683604 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41D-A10Q-05 36da685d-df49-495c-9200-28d5ee683604 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0/6005486011_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0 47 07-NOV-11 04.04.17.697000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41D-A10Q-05 36da685d-df49-495c-9200-28d5ee683604 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0/6005486011_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0 47 07-NOV-11 04.04.17.697000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41D-A10Q-05 36da685d-df49-495c-9200-28d5ee683604 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.1.1.0/jhu-usc.edu_BRCA.HumanMethylation450.1.lvl-2.TCGA-A7-A0DC-11A-41D-A10Q-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.1.1.0 47 07-NOV-11 04.38.19.253000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41D-A10Q-05 36da685d-df49-495c-9200-28d5ee683604 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.1.1.0/jhu-usc.edu_BRCA.HumanMethylation450.1.lvl-3.TCGA-A7-A0DC-11A-41D-A10Q-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.1.1.0 47 07-NOV-11 05.34.09.862000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41R-A089-07 cb3f974e-6bce-4757-a350-aef8e7925086 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41R-A089-07 cb3f974e-6bce-4757-a350-aef8e7925086 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012653_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 47 02-NOV-10 12.30.07.283000000 AM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41R-A089-07 cb3f974e-6bce-4757-a350-aef8e7925086 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012653_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 47 02-NOV-10 12.25.38.097000000 AM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41R-A089-07 cb3f974e-6bce-4757-a350-aef8e7925086 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012653_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 47 02-NOV-10 12.26.20.805000000 AM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41R-A089-07 cb3f974e-6bce-4757-a350-aef8e7925086 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_830290.TCGA-A7-A0DC-11A-41R-A089-07.110909_UNC9-SN296_0240_BD0DDBABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41R-A089-07 cb3f974e-6bce-4757-a350-aef8e7925086 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_830299.TCGA-A7-A0DC-11A-41R-A089-07.110909_UNC9-SN296_0240_BD0DDBABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41R-A089-07 cb3f974e-6bce-4757-a350-aef8e7925086 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_830401.TCGA-A7-A0DC-11A-41R-A089-07.110909_UNC9-SN296_0240_BD0DDBABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41R-A090-13 01d11e4c-038d-4408-93dd-f714b6489866 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41R-A090-13 01d11e4c-038d-4408-93dd-f714b6489866 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A7-A0DC-11A-41R-A090-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41R-A090-13 01d11e4c-038d-4408-93dd-f714b6489866 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A7-A0DC-11A-41R-A090-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41W-A100-09 adc233b1-6236-4994-8fdd-f6e25087877d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A0DC TCGA-A7-A0DC-11A TCGA-A7-A0DC-11A-41X-A100-09 eda887db-1059-44d3-a550-ed4f37c8c2c2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A7-A0DC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Tumor type incorrect DCIS and not invasive breast carcinoma from Jay Bowen/NWCH / Redaction due to incorrect type of tumor being submitted. TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13D-A12M-02 11dcc9b1-609b-41cf-97bc-cb2997a96e20 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13D-A12N-01 498cc80a-ec3c-4d05-839a-b3ea73ebc774 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13D-A12N-01 498cc80a-ec3c-4d05-839a-b3ea73ebc774 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A01_748020.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13D-A12N-01 498cc80a-ec3c-4d05-839a-b3ea73ebc774 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A01_748020.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13D-A12N-01 498cc80a-ec3c-4d05-839a-b3ea73ebc774 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A01_748020.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13D-A12N-01 498cc80a-ec3c-4d05-839a-b3ea73ebc774 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A01_748020.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13D-A12N-01 498cc80a-ec3c-4d05-839a-b3ea73ebc774 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A01_748020.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13D-A12N-01 498cc80a-ec3c-4d05-839a-b3ea73ebc774 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A01_748020.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13D-A12N-01 498cc80a-ec3c-4d05-839a-b3ea73ebc774 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A01_748020.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13D-A12N-01 498cc80a-ec3c-4d05-839a-b3ea73ebc774 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A01_748020.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13D-A12Q-09 418e916b-7a4e-4fab-8616-15dcec4d79f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13D-A12Q-09 418e916b-7a4e-4fab-8616-15dcec4d79f8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13D-A12R-05 b90bbac2-2907-4408-ba89-a9ad71fd7feb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13D-A12R-05 b90bbac2-2907-4408-ba89-a9ad71fd7feb DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324072_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13D-A12R-05 b90bbac2-2907-4408-ba89-a9ad71fd7feb DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324072_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13D-A12R-05 b90bbac2-2907-4408-ba89-a9ad71fd7feb DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-A7-A13D-01A-13D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13D-A12R-05 b90bbac2-2907-4408-ba89-a9ad71fd7feb DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-A7-A13D-01A-13D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13R-A12O-13 3dae6d51-c3eb-4799-8be5-e01bdcbe65a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13R-A12O-13 3dae6d51-c3eb-4799-8be5-e01bdcbe65a6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A7-A13D-01A-13R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13R-A12O-13 3dae6d51-c3eb-4799-8be5-e01bdcbe65a6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A7-A13D-01A-13R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13R-A12P-07 3af60b03-66c3-48a1-a42b-1e05fdb529c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13R-A12P-07 3af60b03-66c3-48a1-a42b-1e05fdb529c4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012938_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13R-A12P-07 3af60b03-66c3-48a1-a42b-1e05fdb529c4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012938_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13R-A12P-07 3af60b03-66c3-48a1-a42b-1e05fdb529c4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012938_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13R-A12P-07 3af60b03-66c3-48a1-a42b-1e05fdb529c4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441117.TCGA-A7-A13D-01A-13R-A12P-07.110706_UNC12-SN629_0106_AC043GABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13R-A12P-07 3af60b03-66c3-48a1-a42b-1e05fdb529c4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441210.TCGA-A7-A13D-01A-13R-A12P-07.110706_UNC12-SN629_0106_AC043GABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13R-A12P-07 3af60b03-66c3-48a1-a42b-1e05fdb529c4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441331.TCGA-A7-A13D-01A-13R-A12P-07.110706_UNC12-SN629_0106_AC043GABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A13D TCGA-A7-A13D-01A TCGA-A7-A13D-01A-13W-A14O-09 38a65859-aac4-4ab1-a62c-0c329bec23f3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13D TCGA-A7-A13D-10A TCGA-A7-A13D-10A-02D-A12M-02 44cc8365-0f7a-405d-b845-85c16c03300a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13D TCGA-A7-A13D-10A TCGA-A7-A13D-10A-02D-A12N-01 1c2895d2-b6b6-4cbf-9ada-b9c8621f9a40 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13D TCGA-A7-A13D-10A TCGA-A7-A13D-10A-02D-A12N-01 1c2895d2-b6b6-4cbf-9ada-b9c8621f9a40 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C05_748002.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-A7-A13D TCGA-A7-A13D-10A TCGA-A7-A13D-10A-02D-A12N-01 1c2895d2-b6b6-4cbf-9ada-b9c8621f9a40 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C05_748002.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13D TCGA-A7-A13D-10A TCGA-A7-A13D-10A-02D-A12N-01 1c2895d2-b6b6-4cbf-9ada-b9c8621f9a40 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C05_748002.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13D TCGA-A7-A13D-10A TCGA-A7-A13D-10A-02D-A12N-01 1c2895d2-b6b6-4cbf-9ada-b9c8621f9a40 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C05_748002.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13D TCGA-A7-A13D-10A TCGA-A7-A13D-10A-02D-A12N-01 1c2895d2-b6b6-4cbf-9ada-b9c8621f9a40 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C05_748002.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13D TCGA-A7-A13D-10A TCGA-A7-A13D-10A-02D-A12N-01 1c2895d2-b6b6-4cbf-9ada-b9c8621f9a40 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C05_748002.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13D TCGA-A7-A13D-10A TCGA-A7-A13D-10A-02D-A12N-01 1c2895d2-b6b6-4cbf-9ada-b9c8621f9a40 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C05_748002.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13D TCGA-A7-A13D-10A TCGA-A7-A13D-10A-02D-A12N-01 1c2895d2-b6b6-4cbf-9ada-b9c8621f9a40 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C05_748002.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-A7-A13D TCGA-A7-A13D-10A TCGA-A7-A13D-10A-02D-A12Q-09 dbc462f5-f723-4cf7-a48d-84001d2d51e9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13D TCGA-A7-A13D-10A TCGA-A7-A13D-10A-02D-A12Q-09 dbc462f5-f723-4cf7-a48d-84001d2d51e9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-A7-A13D TCGA-A7-A13D-10A TCGA-A7-A13D-10A-02W-A14O-09 f3b4904f-a06b-4a4b-8d92-055a89a386a8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11D-A12M-02 195e9c53-fe7c-4d6f-9d08-22089646e428 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11D-A12N-01 2518f7da-afba-4a61-9ff1-41bc919e10af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11D-A12N-01 2518f7da-afba-4a61-9ff1-41bc919e10af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A08_747928.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11D-A12N-01 2518f7da-afba-4a61-9ff1-41bc919e10af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A08_747928.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11D-A12N-01 2518f7da-afba-4a61-9ff1-41bc919e10af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A08_747928.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11D-A12N-01 2518f7da-afba-4a61-9ff1-41bc919e10af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A08_747928.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11D-A12N-01 2518f7da-afba-4a61-9ff1-41bc919e10af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A08_747928.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11D-A12N-01 2518f7da-afba-4a61-9ff1-41bc919e10af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A08_747928.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11D-A12N-01 2518f7da-afba-4a61-9ff1-41bc919e10af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A08_747928.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11D-A12N-01 2518f7da-afba-4a61-9ff1-41bc919e10af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A08_747928.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11D-A12Q-09 a2710231-62a5-483f-9154-8036ed0ccd6c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11D-A12R-05 805ab3e9-bfd0-4910-8f80-9fd493fbe65b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11D-A12R-05 805ab3e9-bfd0-4910-8f80-9fd493fbe65b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324035_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11D-A12R-05 805ab3e9-bfd0-4910-8f80-9fd493fbe65b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324035_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11D-A12R-05 805ab3e9-bfd0-4910-8f80-9fd493fbe65b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-A7-A13E-01A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11D-A12R-05 805ab3e9-bfd0-4910-8f80-9fd493fbe65b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-A7-A13E-01A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11R-A12O-13 c1f255b1-3ed6-4ae8-9886-b42519d45ad3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11R-A12O-13 c1f255b1-3ed6-4ae8-9886-b42519d45ad3 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A7-A13E-01A-11R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11R-A12O-13 c1f255b1-3ed6-4ae8-9886-b42519d45ad3 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A7-A13E-01A-11R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11R-A12P-07 b7f491a9-eddf-43b1-9baf-862db2d50383 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11R-A12P-07 b7f491a9-eddf-43b1-9baf-862db2d50383 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012946_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11R-A12P-07 b7f491a9-eddf-43b1-9baf-862db2d50383 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012946_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11R-A12P-07 b7f491a9-eddf-43b1-9baf-862db2d50383 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012946_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11R-A12P-07 b7f491a9-eddf-43b1-9baf-862db2d50383 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441123.TCGA-A7-A13E-01A-11R-A12P-07.110706_UNC12-SN629_0106_AC043GABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11R-A12P-07 b7f491a9-eddf-43b1-9baf-862db2d50383 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441194.TCGA-A7-A13E-01A-11R-A12P-07.110706_UNC12-SN629_0106_AC043GABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11R-A12P-07 b7f491a9-eddf-43b1-9baf-862db2d50383 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441219.TCGA-A7-A13E-01A-11R-A12P-07.110706_UNC12-SN629_0106_AC043GABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A13E TCGA-A7-A13E-01A TCGA-A7-A13E-01A-11W-A14O-09 2a605349-cd93-478a-8569-92cfec061d30 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13E TCGA-A7-A13E-10A TCGA-A7-A13E-10A-01D-A12M-02 e693b0ec-9ad9-4ffc-bce6-f6744573e0d7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13E TCGA-A7-A13E-10A TCGA-A7-A13E-10A-01D-A12N-01 743491a2-21be-4ba6-8e40-88ecdf93daef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13E TCGA-A7-A13E-10A TCGA-A7-A13E-10A-01D-A12N-01 743491a2-21be-4ba6-8e40-88ecdf93daef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A10_747906.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-A7-A13E TCGA-A7-A13E-10A TCGA-A7-A13E-10A-01D-A12N-01 743491a2-21be-4ba6-8e40-88ecdf93daef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A10_747906.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13E TCGA-A7-A13E-10A TCGA-A7-A13E-10A-01D-A12N-01 743491a2-21be-4ba6-8e40-88ecdf93daef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A10_747906.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13E TCGA-A7-A13E-10A TCGA-A7-A13E-10A-01D-A12N-01 743491a2-21be-4ba6-8e40-88ecdf93daef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A10_747906.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13E TCGA-A7-A13E-10A TCGA-A7-A13E-10A-01D-A12N-01 743491a2-21be-4ba6-8e40-88ecdf93daef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A10_747906.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13E TCGA-A7-A13E-10A TCGA-A7-A13E-10A-01D-A12N-01 743491a2-21be-4ba6-8e40-88ecdf93daef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A10_747906.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13E TCGA-A7-A13E-10A TCGA-A7-A13E-10A-01D-A12N-01 743491a2-21be-4ba6-8e40-88ecdf93daef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A10_747906.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13E TCGA-A7-A13E-10A TCGA-A7-A13E-10A-01D-A12N-01 743491a2-21be-4ba6-8e40-88ecdf93daef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A10_747906.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-A7-A13E TCGA-A7-A13E-10A TCGA-A7-A13E-10A-01D-A12Q-09 23fbfc21-e16b-457d-950c-ec7e2d0b73a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13E TCGA-A7-A13E-10A TCGA-A7-A13E-10A-01W-A14O-09 f3049795-9dc3-46ec-b929-b2b2ec34a883 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13E TCGA-A7-A13E-11A TCGA-A7-A13E-11A-61D-A12M-02 79bc27fa-f40b-411a-bdc2-29e3a24110ea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13E TCGA-A7-A13E-11A TCGA-A7-A13E-11A-61D-A12N-01 fd203984-44aa-49e0-ae0c-11643697d937 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13E TCGA-A7-A13E-11A TCGA-A7-A13E-11A-61D-A12N-01 fd203984-44aa-49e0-ae0c-11643697d937 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D05_747994.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-A7-A13E TCGA-A7-A13E-11A TCGA-A7-A13E-11A-61D-A12N-01 fd203984-44aa-49e0-ae0c-11643697d937 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D05_747994.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13E TCGA-A7-A13E-11A TCGA-A7-A13E-11A-61D-A12N-01 fd203984-44aa-49e0-ae0c-11643697d937 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D05_747994.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13E TCGA-A7-A13E-11A TCGA-A7-A13E-11A-61D-A12N-01 fd203984-44aa-49e0-ae0c-11643697d937 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D05_747994.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13E TCGA-A7-A13E-11A TCGA-A7-A13E-11A-61D-A12N-01 fd203984-44aa-49e0-ae0c-11643697d937 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D05_747994.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13E TCGA-A7-A13E-11A TCGA-A7-A13E-11A-61D-A12N-01 fd203984-44aa-49e0-ae0c-11643697d937 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D05_747994.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13E TCGA-A7-A13E-11A TCGA-A7-A13E-11A-61D-A12N-01 fd203984-44aa-49e0-ae0c-11643697d937 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D05_747994.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13E TCGA-A7-A13E-11A TCGA-A7-A13E-11A-61D-A12N-01 fd203984-44aa-49e0-ae0c-11643697d937 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D05_747994.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-A7-A13E TCGA-A7-A13E-11A TCGA-A7-A13E-11A-61D-A12Q-09 7b565538-7488-4654-9034-8a0e6fe65bf1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13E TCGA-A7-A13E-11A TCGA-A7-A13E-11A-61D-A12R-05 f7315045-b78d-49b0-87a5-36e24fea92b5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13E TCGA-A7-A13E-11A TCGA-A7-A13E-11A-61D-A12R-05 f7315045-b78d-49b0-87a5-36e24fea92b5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324035_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-A7-A13E TCGA-A7-A13E-11A TCGA-A7-A13E-11A-61D-A12R-05 f7315045-b78d-49b0-87a5-36e24fea92b5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324035_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-A7-A13E TCGA-A7-A13E-11A TCGA-A7-A13E-11A-61D-A12R-05 f7315045-b78d-49b0-87a5-36e24fea92b5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-A7-A13E-11A-61D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-A7-A13E TCGA-A7-A13E-11A TCGA-A7-A13E-11A-61D-A12R-05 f7315045-b78d-49b0-87a5-36e24fea92b5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-A7-A13E-11A-61D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-A7-A13E TCGA-A7-A13E-11A TCGA-A7-A13E-11A-61R-A12O-13 cd560004-50be-4056-be0b-3510c7029491 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13E TCGA-A7-A13E-11A TCGA-A7-A13E-11A-61R-A12O-13 cd560004-50be-4056-be0b-3510c7029491 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A7-A13E-11A-61R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-A7-A13E TCGA-A7-A13E-11A TCGA-A7-A13E-11A-61R-A12O-13 cd560004-50be-4056-be0b-3510c7029491 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A7-A13E-11A-61R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-A7-A13E TCGA-A7-A13E-11A TCGA-A7-A13E-11A-61R-A12P-07 80efdbaa-067b-4018-89b2-b8869bfb9163 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13E TCGA-A7-A13E-11A TCGA-A7-A13E-11A-61R-A12P-07 80efdbaa-067b-4018-89b2-b8869bfb9163 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012956_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-A7-A13E TCGA-A7-A13E-11A TCGA-A7-A13E-11A-61R-A12P-07 80efdbaa-067b-4018-89b2-b8869bfb9163 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012956_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-A7-A13E TCGA-A7-A13E-11A TCGA-A7-A13E-11A-61R-A12P-07 80efdbaa-067b-4018-89b2-b8869bfb9163 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012956_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-A7-A13E TCGA-A7-A13E-11A TCGA-A7-A13E-11A-61W-A14O-09 fa389599-4fc1-494a-a28c-004725235ac8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11D-A12M-02 3611f8cf-b328-4c36-9980-812eb2bb3bef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11D-A12N-01 b2b8924a-2ad1-4463-9b5d-c6c5609318ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11D-A12N-01 b2b8924a-2ad1-4463-9b5d-c6c5609318ef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D02_748008.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11D-A12N-01 b2b8924a-2ad1-4463-9b5d-c6c5609318ef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D02_748008.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11D-A12N-01 b2b8924a-2ad1-4463-9b5d-c6c5609318ef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D02_748008.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11D-A12N-01 b2b8924a-2ad1-4463-9b5d-c6c5609318ef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D02_748008.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11D-A12N-01 b2b8924a-2ad1-4463-9b5d-c6c5609318ef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D02_748008.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11D-A12N-01 b2b8924a-2ad1-4463-9b5d-c6c5609318ef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D02_748008.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11D-A12N-01 b2b8924a-2ad1-4463-9b5d-c6c5609318ef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D02_748008.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11D-A12N-01 b2b8924a-2ad1-4463-9b5d-c6c5609318ef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D02_748008.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11D-A12Q-09 f9ad889c-2135-40e3-97e6-c022d7eb6a92 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11D-A12Q-09 f9ad889c-2135-40e3-97e6-c022d7eb6a92 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11D-A12R-05 44a68ae4-7de9-442f-909d-90e2a851727e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11D-A12R-05 44a68ae4-7de9-442f-909d-90e2a851727e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324030_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11D-A12R-05 44a68ae4-7de9-442f-909d-90e2a851727e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324030_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11D-A12R-05 44a68ae4-7de9-442f-909d-90e2a851727e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-A7-A13F-01A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11D-A12R-05 44a68ae4-7de9-442f-909d-90e2a851727e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-A7-A13F-01A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11R-A12O-13 e4919ad4-f4f6-4ace-9d8a-a35f1f53a213 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11R-A12O-13 e4919ad4-f4f6-4ace-9d8a-a35f1f53a213 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A7-A13F-01A-11R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11R-A12O-13 e4919ad4-f4f6-4ace-9d8a-a35f1f53a213 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A7-A13F-01A-11R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11R-A12P-07 fc4f35dd-9924-4e5d-ba71-0d7a79752b6a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11R-A12P-07 fc4f35dd-9924-4e5d-ba71-0d7a79752b6a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012951_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11R-A12P-07 fc4f35dd-9924-4e5d-ba71-0d7a79752b6a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012951_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11R-A12P-07 fc4f35dd-9924-4e5d-ba71-0d7a79752b6a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012951_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11R-A12P-07 fc4f35dd-9924-4e5d-ba71-0d7a79752b6a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441168.TCGA-A7-A13F-01A-11R-A12P-07.110706_UNC12-SN629_0106_AC043GABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11R-A12P-07 fc4f35dd-9924-4e5d-ba71-0d7a79752b6a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441171.TCGA-A7-A13F-01A-11R-A12P-07.110706_UNC12-SN629_0106_AC043GABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11R-A12P-07 fc4f35dd-9924-4e5d-ba71-0d7a79752b6a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441308.TCGA-A7-A13F-01A-11R-A12P-07.110706_UNC12-SN629_0106_AC043GABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A13F TCGA-A7-A13F-01A TCGA-A7-A13F-01A-11W-A14O-09 e822da23-b489-4b87-a05b-5b55ca11f028 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13F TCGA-A7-A13F-10A TCGA-A7-A13F-10A-01D-A12M-02 bb70f2ce-682f-4aca-8935-04ef555c3c35 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13F TCGA-A7-A13F-10A TCGA-A7-A13F-10A-01D-A12N-01 21121f81-b3e3-4e36-b15a-035d13d0afd7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13F TCGA-A7-A13F-10A TCGA-A7-A13F-10A-01D-A12N-01 21121f81-b3e3-4e36-b15a-035d13d0afd7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A05_748040.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-A7-A13F TCGA-A7-A13F-10A TCGA-A7-A13F-10A-01D-A12N-01 21121f81-b3e3-4e36-b15a-035d13d0afd7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A05_748040.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13F TCGA-A7-A13F-10A TCGA-A7-A13F-10A-01D-A12N-01 21121f81-b3e3-4e36-b15a-035d13d0afd7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A05_748040.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13F TCGA-A7-A13F-10A TCGA-A7-A13F-10A-01D-A12N-01 21121f81-b3e3-4e36-b15a-035d13d0afd7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A05_748040.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13F TCGA-A7-A13F-10A TCGA-A7-A13F-10A-01D-A12N-01 21121f81-b3e3-4e36-b15a-035d13d0afd7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A05_748040.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13F TCGA-A7-A13F-10A TCGA-A7-A13F-10A-01D-A12N-01 21121f81-b3e3-4e36-b15a-035d13d0afd7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A05_748040.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13F TCGA-A7-A13F-10A TCGA-A7-A13F-10A-01D-A12N-01 21121f81-b3e3-4e36-b15a-035d13d0afd7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A05_748040.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13F TCGA-A7-A13F-10A TCGA-A7-A13F-10A-01D-A12N-01 21121f81-b3e3-4e36-b15a-035d13d0afd7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A05_748040.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-A7-A13F TCGA-A7-A13F-10A TCGA-A7-A13F-10A-01D-A12Q-09 8060bafc-8b8c-44ba-91ba-8a9035b52f44 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13F TCGA-A7-A13F-10A TCGA-A7-A13F-10A-01D-A12Q-09 8060bafc-8b8c-44ba-91ba-8a9035b52f44 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-A7-A13F TCGA-A7-A13F-10A TCGA-A7-A13F-10A-01W-A14O-09 e0325ed6-c66c-43a4-9f22-a9b2e1ee2649 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13F TCGA-A7-A13F-11A TCGA-A7-A13F-11A-42D-A12M-02 cebfd523-ef0e-4537-995c-154235c45a33 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13F TCGA-A7-A13F-11A TCGA-A7-A13F-11A-42D-A12N-01 ef08b4c0-2917-4722-bdb4-7f8b70297f1d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13F TCGA-A7-A13F-11A TCGA-A7-A13F-11A-42D-A12N-01 ef08b4c0-2917-4722-bdb4-7f8b70297f1d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B05_747918.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-A7-A13F TCGA-A7-A13F-11A TCGA-A7-A13F-11A-42D-A12N-01 ef08b4c0-2917-4722-bdb4-7f8b70297f1d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B05_747918.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13F TCGA-A7-A13F-11A TCGA-A7-A13F-11A-42D-A12N-01 ef08b4c0-2917-4722-bdb4-7f8b70297f1d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B05_747918.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13F TCGA-A7-A13F-11A TCGA-A7-A13F-11A-42D-A12N-01 ef08b4c0-2917-4722-bdb4-7f8b70297f1d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B05_747918.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13F TCGA-A7-A13F-11A TCGA-A7-A13F-11A-42D-A12N-01 ef08b4c0-2917-4722-bdb4-7f8b70297f1d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B05_747918.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13F TCGA-A7-A13F-11A TCGA-A7-A13F-11A-42D-A12N-01 ef08b4c0-2917-4722-bdb4-7f8b70297f1d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B05_747918.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13F TCGA-A7-A13F-11A TCGA-A7-A13F-11A-42D-A12N-01 ef08b4c0-2917-4722-bdb4-7f8b70297f1d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B05_747918.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-A7-A13F TCGA-A7-A13F-11A TCGA-A7-A13F-11A-42D-A12N-01 ef08b4c0-2917-4722-bdb4-7f8b70297f1d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B05_747918.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-A7-A13F TCGA-A7-A13F-11A TCGA-A7-A13F-11A-42D-A12Q-09 9b12ed02-9183-4b84-b638-fd56f00f411a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13F TCGA-A7-A13F-11A TCGA-A7-A13F-11A-42D-A12Q-09 9b12ed02-9183-4b84-b638-fd56f00f411a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-A7-A13F TCGA-A7-A13F-11A TCGA-A7-A13F-11A-42D-A12R-05 1c71c26e-509f-440e-907b-efb9882d47ab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13F TCGA-A7-A13F-11A TCGA-A7-A13F-11A-42D-A12R-05 1c71c26e-509f-440e-907b-efb9882d47ab DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324035_R05C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-A7-A13F TCGA-A7-A13F-11A TCGA-A7-A13F-11A-42D-A12R-05 1c71c26e-509f-440e-907b-efb9882d47ab DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324035_R05C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-A7-A13F TCGA-A7-A13F-11A TCGA-A7-A13F-11A-42D-A12R-05 1c71c26e-509f-440e-907b-efb9882d47ab DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-A7-A13F-11A-42D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-A7-A13F TCGA-A7-A13F-11A TCGA-A7-A13F-11A-42D-A12R-05 1c71c26e-509f-440e-907b-efb9882d47ab DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-A7-A13F-11A-42D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-A7-A13F TCGA-A7-A13F-11A TCGA-A7-A13F-11A-42R-A12O-13 5bd54e7c-dde3-4f34-975f-ccb6e4572afa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13F TCGA-A7-A13F-11A TCGA-A7-A13F-11A-42R-A12O-13 5bd54e7c-dde3-4f34-975f-ccb6e4572afa miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A7-A13F-11A-42R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-A7-A13F TCGA-A7-A13F-11A TCGA-A7-A13F-11A-42R-A12O-13 5bd54e7c-dde3-4f34-975f-ccb6e4572afa miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A7-A13F-11A-42R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-A7-A13F TCGA-A7-A13F-11A TCGA-A7-A13F-11A-42R-A12P-07 82f3157c-09cc-40d7-872e-59f82f5f31f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13F TCGA-A7-A13F-11A TCGA-A7-A13F-11A-42R-A12P-07 82f3157c-09cc-40d7-872e-59f82f5f31f4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012964_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-A7-A13F TCGA-A7-A13F-11A TCGA-A7-A13F-11A-42R-A12P-07 82f3157c-09cc-40d7-872e-59f82f5f31f4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012964_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-A7-A13F TCGA-A7-A13F-11A TCGA-A7-A13F-11A-42R-A12P-07 82f3157c-09cc-40d7-872e-59f82f5f31f4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012964_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-A7-A13F TCGA-A7-A13F-11A TCGA-A7-A13F-11A-42W-A14O-09 75574c61-99c8-43b3-97cb-672f0e40f4d2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-A7-A13G TCGA-A7-A13G-01A TCGA-A7-A13G-01A-11D-A13I-02 ea54b5b1-af06-4de1-83fa-444f3491ab08 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A7-A13G TCGA-A7-A13G-01A TCGA-A7-A13G-01A-11D-A13J-01 df947eb4-659d-46a6-95e1-fcc0d471a17c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A7-A13G TCGA-A7-A13G-01A TCGA-A7-A13G-01A-11D-A13J-01 df947eb4-659d-46a6-95e1-fcc0d471a17c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A01_771906.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-A7-A13G TCGA-A7-A13G-01A TCGA-A7-A13G-01A-11D-A13J-01 df947eb4-659d-46a6-95e1-fcc0d471a17c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A01_771906.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A7-A13G TCGA-A7-A13G-01A TCGA-A7-A13G-01A-11D-A13J-01 df947eb4-659d-46a6-95e1-fcc0d471a17c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A01_771906.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A7-A13G TCGA-A7-A13G-01A TCGA-A7-A13G-01A-11D-A13J-01 df947eb4-659d-46a6-95e1-fcc0d471a17c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A01_771906.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A7-A13G TCGA-A7-A13G-01A TCGA-A7-A13G-01A-11D-A13J-01 df947eb4-659d-46a6-95e1-fcc0d471a17c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A01_771906.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A7-A13G TCGA-A7-A13G-01A TCGA-A7-A13G-01A-11D-A13J-01 df947eb4-659d-46a6-95e1-fcc0d471a17c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A01_771906.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A7-A13G TCGA-A7-A13G-01A TCGA-A7-A13G-01A-11D-A13J-01 df947eb4-659d-46a6-95e1-fcc0d471a17c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A01_771906.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A7-A13G TCGA-A7-A13G-01A TCGA-A7-A13G-01A-11D-A13J-01 df947eb4-659d-46a6-95e1-fcc0d471a17c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A01_771906.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-A7-A13G TCGA-A7-A13G-01A TCGA-A7-A13G-01A-11D-A13K-05 21a1b245-8b33-4f40-a9b7-b55b30c3fd6c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A7-A13G TCGA-A7-A13G-01A TCGA-A7-A13G-01A-11D-A13K-05 21a1b245-8b33-4f40-a9b7-b55b30c3fd6c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818144_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-A7-A13G TCGA-A7-A13G-01A TCGA-A7-A13G-01A-11D-A13K-05 21a1b245-8b33-4f40-a9b7-b55b30c3fd6c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818144_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-A7-A13G TCGA-A7-A13G-01A TCGA-A7-A13G-01A-11D-A13K-05 21a1b245-8b33-4f40-a9b7-b55b30c3fd6c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-A7-A13G-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-A7-A13G TCGA-A7-A13G-01A TCGA-A7-A13G-01A-11D-A13K-05 21a1b245-8b33-4f40-a9b7-b55b30c3fd6c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-A7-A13G-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-A7-A13G TCGA-A7-A13G-01A TCGA-A7-A13G-01A-11D-A13L-09 ef847b83-eb88-435b-bcfd-4b51d4dfa5fe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A7-A13G TCGA-A7-A13G-01A TCGA-A7-A13G-01A-11D-A17G-09 615dd4cc-446b-4108-b3fe-cc9e7fed6b41 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A7-A13G TCGA-A7-A13G-01A TCGA-A7-A13G-01A-11R-A13P-13 d6f5fd4a-4db3-4927-b9cb-83f4b729b6fc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A7-A13G TCGA-A7-A13G-01A TCGA-A7-A13G-01A-11R-A13P-13 d6f5fd4a-4db3-4927-b9cb-83f4b729b6fc miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A7-A13G-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-A7-A13G TCGA-A7-A13G-01A TCGA-A7-A13G-01A-11R-A13P-13 d6f5fd4a-4db3-4927-b9cb-83f4b729b6fc miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A7-A13G-01A-11R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-A7-A13G TCGA-A7-A13G-01A TCGA-A7-A13G-01A-11R-A13Q-07 ac567288-88cc-4a65-937e-086655c038df Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A7-A13G TCGA-A7-A13G-01A TCGA-A7-A13G-01A-11R-A13Q-07 ac567288-88cc-4a65-937e-086655c038df RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_450055.TCGA-A7-A13G-01A-11R-A13Q-07.110805_UNC11-SN627_0134_AC042TABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A13G TCGA-A7-A13G-01A TCGA-A7-A13G-01A-11R-A13Q-07 ac567288-88cc-4a65-937e-086655c038df RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_450071.TCGA-A7-A13G-01A-11R-A13Q-07.110805_UNC11-SN627_0134_AC042TABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A13G TCGA-A7-A13G-01A TCGA-A7-A13G-01A-11R-A13Q-07 ac567288-88cc-4a65-937e-086655c038df RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_450104.TCGA-A7-A13G-01A-11R-A13Q-07.110805_UNC11-SN627_0134_AC042TABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A13G TCGA-A7-A13G-01A TCGA-A7-A13G-01A-11W-A14Q-09 1a85e117-c4a6-4f8f-a327-43e9e606db66 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A7-A13G TCGA-A7-A13G-11A TCGA-A7-A13G-11A-51D-A13M-02 d2a40b45-4e28-44f1-a1cb-a24af9ba3f5f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A7-A13G TCGA-A7-A13G-11A TCGA-A7-A13G-11A-51D-A13N-01 934ee100-3d1c-48c1-b49a-9ed8c8a53ffe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A7-A13G TCGA-A7-A13G-11A TCGA-A7-A13G-11A-51D-A13N-01 934ee100-3d1c-48c1-b49a-9ed8c8a53ffe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A11_771896.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-A7-A13G TCGA-A7-A13G-11A TCGA-A7-A13G-11A-51D-A13N-01 934ee100-3d1c-48c1-b49a-9ed8c8a53ffe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A11_771896.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A7-A13G TCGA-A7-A13G-11A TCGA-A7-A13G-11A-51D-A13N-01 934ee100-3d1c-48c1-b49a-9ed8c8a53ffe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A11_771896.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A7-A13G TCGA-A7-A13G-11A TCGA-A7-A13G-11A-51D-A13N-01 934ee100-3d1c-48c1-b49a-9ed8c8a53ffe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A11_771896.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A7-A13G TCGA-A7-A13G-11A TCGA-A7-A13G-11A-51D-A13N-01 934ee100-3d1c-48c1-b49a-9ed8c8a53ffe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A11_771896.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A7-A13G TCGA-A7-A13G-11A TCGA-A7-A13G-11A-51D-A13N-01 934ee100-3d1c-48c1-b49a-9ed8c8a53ffe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A11_771896.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A7-A13G TCGA-A7-A13G-11A TCGA-A7-A13G-11A-51D-A13N-01 934ee100-3d1c-48c1-b49a-9ed8c8a53ffe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A11_771896.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-A7-A13G TCGA-A7-A13G-11A TCGA-A7-A13G-11A-51D-A13N-01 934ee100-3d1c-48c1-b49a-9ed8c8a53ffe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A11_771896.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-A7-A13G TCGA-A7-A13G-11A TCGA-A7-A13G-11A-51D-A13O-09 7eaacabd-76fe-4080-9e1c-7277bffe8b89 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A7-A13G TCGA-A7-A13G-11A TCGA-A7-A13G-11A-51D-A13T-05 f8f48dac-fbc9-44e8-a0af-a4b15775a7f1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-A7-A13G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-A7-A13G TCGA-A7-A13G-11A TCGA-A7-A13G-11A-51D-A13T-05 f8f48dac-fbc9-44e8-a0af-a4b15775a7f1 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818135_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-A7-A13G TCGA-A7-A13G-11A TCGA-A7-A13G-11A-51D-A13T-05 f8f48dac-fbc9-44e8-a0af-a4b15775a7f1 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-3.TCGA-A7-A26E-01A-11D-A16A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0 142 07-NOV-11 06.37.11.245000000 PM TCGA-A7-A26E TCGA-A7-A26E-01A TCGA-A7-A26E-01A-11R-A168-13 c9e2ccdf-2ce3-41a1-8529-cb35e3e90fef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26E TCGA-A7-A26E-01A TCGA-A7-A26E-01A-11R-A168-13 c9e2ccdf-2ce3-41a1-8529-cb35e3e90fef miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_591687.TCGA-A7-A26E-01A-11R-A169-07.110919_UNC12-SN629_0141_AB0104ABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A26E TCGA-A7-A26E-01A TCGA-A7-A26E-01A-11R-A169-07 6130b450-8b88-4a9a-b462-a34ec94183c9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_591778.TCGA-A7-A26E-01A-11R-A169-07.110919_UNC12-SN629_0141_AB0104ABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A26E TCGA-A7-A26E-01A TCGA-A7-A26E-01A-11W-A184-09 ae3421b0-7310-46cf-ac46-bd1bdb16e470 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26E TCGA-A7-A26E-10A TCGA-A7-A26E-10A-01D-A165-02 0ce67a4a-d773-4e38-9b83-b99514d4a764 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26E TCGA-A7-A26E-10A TCGA-A7-A26E-10A-01D-A166-01 4338caf3-de78-4f22-a2d6-1e43b2307502 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26E TCGA-A7-A26E-10A TCGA-A7-A26E-10A-01D-A166-01 4338caf3-de78-4f22-a2d6-1e43b2307502 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A11_802346.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-A7-A26E TCGA-A7-A26E-10A TCGA-A7-A26E-10A-01D-A166-01 4338caf3-de78-4f22-a2d6-1e43b2307502 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A11_802346.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26E TCGA-A7-A26E-10A TCGA-A7-A26E-10A-01D-A166-01 4338caf3-de78-4f22-a2d6-1e43b2307502 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A11_802346.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26E TCGA-A7-A26E-10A TCGA-A7-A26E-10A-01D-A166-01 4338caf3-de78-4f22-a2d6-1e43b2307502 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A11_802346.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26E TCGA-A7-A26E-10A TCGA-A7-A26E-10A-01D-A166-01 4338caf3-de78-4f22-a2d6-1e43b2307502 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A11_802346.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26E TCGA-A7-A26E-10A TCGA-A7-A26E-10A-01D-A166-01 4338caf3-de78-4f22-a2d6-1e43b2307502 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A11_802346.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26E TCGA-A7-A26E-10A TCGA-A7-A26E-10A-01D-A166-01 4338caf3-de78-4f22-a2d6-1e43b2307502 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A11_802346.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26E TCGA-A7-A26E-10A TCGA-A7-A26E-10A-01D-A166-01 4338caf3-de78-4f22-a2d6-1e43b2307502 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A11_802346.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-A7-A26E TCGA-A7-A26E-10A TCGA-A7-A26E-10A-01D-A167-09 a411cfe0-378e-4919-94e6-4c3beb8f61ca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26E TCGA-A7-A26E-10A TCGA-A7-A26E-10A-01W-A184-09 3e69a43a-91bc-49b9-b9f2-1c7256a606d8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26F TCGA-A7-A26F-01A TCGA-A7-A26F-01A-21D-A165-02 4863857f-decf-483a-859c-4aa6aef8760a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26F TCGA-A7-A26F-01A TCGA-A7-A26F-01A-21D-A166-01 5676cfeb-171d-493a-bd7f-902315494da7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26F TCGA-A7-A26F-01A TCGA-A7-A26F-01A-21D-A166-01 5676cfeb-171d-493a-bd7f-902315494da7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A12_802324.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-A7-A26F TCGA-A7-A26F-01A TCGA-A7-A26F-01A-21D-A166-01 5676cfeb-171d-493a-bd7f-902315494da7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A12_802324.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26F TCGA-A7-A26F-01A TCGA-A7-A26F-01A-21D-A166-01 5676cfeb-171d-493a-bd7f-902315494da7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A12_802324.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26F TCGA-A7-A26F-01A TCGA-A7-A26F-01A-21D-A166-01 5676cfeb-171d-493a-bd7f-902315494da7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A12_802324.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26F TCGA-A7-A26F-01A TCGA-A7-A26F-01A-21D-A166-01 5676cfeb-171d-493a-bd7f-902315494da7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A12_802324.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26F TCGA-A7-A26F-01A TCGA-A7-A26F-01A-21D-A166-01 5676cfeb-171d-493a-bd7f-902315494da7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A12_802324.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26F TCGA-A7-A26F-01A TCGA-A7-A26F-01A-21D-A166-01 5676cfeb-171d-493a-bd7f-902315494da7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A12_802324.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26F TCGA-A7-A26F-01A TCGA-A7-A26F-01A-21D-A166-01 5676cfeb-171d-493a-bd7f-902315494da7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A12_802324.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-A7-A26F TCGA-A7-A26F-01A TCGA-A7-A26F-01A-21D-A167-09 fc73db72-d0ac-48d0-b809-2f7540482ec5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26F TCGA-A7-A26F-01A TCGA-A7-A26F-01A-21D-A16A-05 7fe61be8-25ef-41e6-9dc6-5dac0de3798f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26F TCGA-A7-A26F-01A TCGA-A7-A26F-01A-21D-A16A-05 7fe61be8-25ef-41e6-9dc6-5dac0de3798f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833142_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-A7-A26F TCGA-A7-A26F-01A TCGA-A7-A26F-01A-21D-A16A-05 7fe61be8-25ef-41e6-9dc6-5dac0de3798f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833142_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-A7-A26F TCGA-A7-A26F-01A TCGA-A7-A26F-01A-21D-A16A-05 7fe61be8-25ef-41e6-9dc6-5dac0de3798f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-2.TCGA-A7-A26F-01A-21D-A16A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0 142 07-NOV-11 04.58.21.556000000 PM TCGA-A7-A26F TCGA-A7-A26F-01A TCGA-A7-A26F-01A-21D-A16A-05 7fe61be8-25ef-41e6-9dc6-5dac0de3798f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-3.TCGA-A7-A26F-01A-21D-A16A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0 142 07-NOV-11 06.37.11.245000000 PM TCGA-A7-A26F TCGA-A7-A26F-01A TCGA-A7-A26F-01A-21R-A168-13 5270c18e-83bd-45e4-8f0e-628ef7be59c6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26F TCGA-A7-A26F-01A TCGA-A7-A26F-01A-21R-A168-13 5270c18e-83bd-45e4-8f0e-628ef7be59c6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A7-A26F-01A-21R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-A7-A26F TCGA-A7-A26F-01A TCGA-A7-A26F-01A-21R-A168-13 5270c18e-83bd-45e4-8f0e-628ef7be59c6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A7-A26F-01A-21R-A168-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-A7-A26F TCGA-A7-A26F-01A TCGA-A7-A26F-01A-21R-A169-07 2a4747b5-1eeb-45b1-9e92-0e0e3d7a9c1b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26F TCGA-A7-A26F-01A TCGA-A7-A26F-01A-21R-A169-07 2a4747b5-1eeb-45b1-9e92-0e0e3d7a9c1b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_591636.TCGA-A7-A26F-01A-21R-A169-07.110919_UNC12-SN629_0141_AB0104ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A26F TCGA-A7-A26F-01A TCGA-A7-A26F-01A-21R-A169-07 2a4747b5-1eeb-45b1-9e92-0e0e3d7a9c1b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_591641.TCGA-A7-A26F-01A-21R-A169-07.110919_UNC12-SN629_0141_AB0104ABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A26F TCGA-A7-A26F-01A TCGA-A7-A26F-01A-21R-A169-07 2a4747b5-1eeb-45b1-9e92-0e0e3d7a9c1b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_591681.TCGA-A7-A26F-01A-21R-A169-07.110919_UNC12-SN629_0141_AB0104ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A26F TCGA-A7-A26F-01A TCGA-A7-A26F-01A-21W-A184-09 d0fd1be6-c968-4256-9b33-52b5a9dff416 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26F TCGA-A7-A26F-10A TCGA-A7-A26F-10A-01D-A165-02 0f86fb54-7bb8-490c-abf0-e87a7be99e74 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26F TCGA-A7-A26F-10A TCGA-A7-A26F-10A-01D-A166-01 bd264521-7a66-4d00-b506-d6990a0de7a0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26F TCGA-A7-A26F-10A TCGA-A7-A26F-10A-01D-A166-01 bd264521-7a66-4d00-b506-d6990a0de7a0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B02_802422.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-A7-A26F TCGA-A7-A26F-10A TCGA-A7-A26F-10A-01D-A166-01 bd264521-7a66-4d00-b506-d6990a0de7a0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B02_802422.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26F TCGA-A7-A26F-10A TCGA-A7-A26F-10A-01D-A166-01 bd264521-7a66-4d00-b506-d6990a0de7a0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B02_802422.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26F TCGA-A7-A26F-10A TCGA-A7-A26F-10A-01D-A166-01 bd264521-7a66-4d00-b506-d6990a0de7a0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B02_802422.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26F TCGA-A7-A26F-10A TCGA-A7-A26F-10A-01D-A166-01 bd264521-7a66-4d00-b506-d6990a0de7a0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B02_802422.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26F TCGA-A7-A26F-10A TCGA-A7-A26F-10A-01D-A166-01 bd264521-7a66-4d00-b506-d6990a0de7a0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B02_802422.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26F TCGA-A7-A26F-10A TCGA-A7-A26F-10A-01D-A166-01 bd264521-7a66-4d00-b506-d6990a0de7a0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B02_802422.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26F TCGA-A7-A26F-10A TCGA-A7-A26F-10A-01D-A166-01 bd264521-7a66-4d00-b506-d6990a0de7a0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B02_802422.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-A7-A26F TCGA-A7-A26F-10A TCGA-A7-A26F-10A-01D-A167-09 7d94bbca-3e31-4a95-819a-def4981d43e8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26F TCGA-A7-A26F-10A TCGA-A7-A26F-10A-01W-A184-09 9e54089f-58d7-4d1c-acb4-da2edd16b362 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26G TCGA-A7-A26G-01A TCGA-A7-A26G-01A-21D-A165-02 ad35f00b-95bc-4cd2-8472-4a0a88fbad0e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26G TCGA-A7-A26G-01A TCGA-A7-A26G-01A-21D-A166-01 766041d3-8592-405b-8fec-225c17bcfa96 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26G TCGA-A7-A26G-01A TCGA-A7-A26G-01A-21D-A166-01 766041d3-8592-405b-8fec-225c17bcfa96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D03_802396.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-A7-A26G TCGA-A7-A26G-01A TCGA-A7-A26G-01A-21D-A166-01 766041d3-8592-405b-8fec-225c17bcfa96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D03_802396.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26G TCGA-A7-A26G-01A TCGA-A7-A26G-01A-21D-A166-01 766041d3-8592-405b-8fec-225c17bcfa96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D03_802396.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26G TCGA-A7-A26G-01A TCGA-A7-A26G-01A-21D-A166-01 766041d3-8592-405b-8fec-225c17bcfa96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D03_802396.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26G TCGA-A7-A26G-01A TCGA-A7-A26G-01A-21D-A166-01 766041d3-8592-405b-8fec-225c17bcfa96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D03_802396.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26G TCGA-A7-A26G-01A TCGA-A7-A26G-01A-21D-A166-01 766041d3-8592-405b-8fec-225c17bcfa96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D03_802396.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26G TCGA-A7-A26G-01A TCGA-A7-A26G-01A-21D-A166-01 766041d3-8592-405b-8fec-225c17bcfa96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D03_802396.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26G TCGA-A7-A26G-01A TCGA-A7-A26G-01A-21D-A166-01 766041d3-8592-405b-8fec-225c17bcfa96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D03_802396.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-A7-A26G TCGA-A7-A26G-01A TCGA-A7-A26G-01A-21D-A167-09 36d1a85e-a09b-4537-86e0-eaf1eb03aed8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26G TCGA-A7-A26G-01A TCGA-A7-A26G-01A-21D-A16A-05 0e8d7bf1-107a-4106-ad18-3250406881df Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26G TCGA-A7-A26G-01A TCGA-A7-A26G-01A-21D-A16A-05 0e8d7bf1-107a-4106-ad18-3250406881df DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833141_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-A7-A26G TCGA-A7-A26G-01A TCGA-A7-A26G-01A-21D-A16A-05 0e8d7bf1-107a-4106-ad18-3250406881df DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833141_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-A7-A26G TCGA-A7-A26G-01A TCGA-A7-A26G-01A-21D-A16A-05 0e8d7bf1-107a-4106-ad18-3250406881df DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-2.TCGA-A7-A26G-01A-21D-A16A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0 142 07-NOV-11 04.58.21.556000000 PM TCGA-A7-A26G TCGA-A7-A26G-01A TCGA-A7-A26G-01A-21D-A16A-05 0e8d7bf1-107a-4106-ad18-3250406881df DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-3.TCGA-A7-A26G-01A-21D-A16A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0 142 07-NOV-11 06.37.11.245000000 PM TCGA-A7-A26G TCGA-A7-A26G-01A TCGA-A7-A26G-01A-21R-A168-13 7f6ea6c0-209e-4d41-8bae-d2e5be351542 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26G TCGA-A7-A26G-01A TCGA-A7-A26G-01A-21R-A168-13 7f6ea6c0-209e-4d41-8bae-d2e5be351542 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A7-A26G-01A-21R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-A7-A26G TCGA-A7-A26G-01A TCGA-A7-A26G-01A-21R-A168-13 7f6ea6c0-209e-4d41-8bae-d2e5be351542 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A7-A26G-01A-21R-A168-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-A7-A26G TCGA-A7-A26G-01A TCGA-A7-A26G-01A-21R-A169-07 8cf1853a-55b2-4fb9-9a65-a46243304d54 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26G TCGA-A7-A26G-01A TCGA-A7-A26G-01A-21R-A169-07 8cf1853a-55b2-4fb9-9a65-a46243304d54 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_591642.TCGA-A7-A26G-01A-21R-A169-07.110919_UNC12-SN629_0141_AB0104ABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A26G TCGA-A7-A26G-01A TCGA-A7-A26G-01A-21R-A169-07 8cf1853a-55b2-4fb9-9a65-a46243304d54 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_591775.TCGA-A7-A26G-01A-21R-A169-07.110919_UNC12-SN629_0141_AB0104ABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A26G TCGA-A7-A26G-01A TCGA-A7-A26G-01A-21R-A169-07 8cf1853a-55b2-4fb9-9a65-a46243304d54 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_591812.TCGA-A7-A26G-01A-21R-A169-07.110919_UNC12-SN629_0141_AB0104ABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A26G TCGA-A7-A26G-01A TCGA-A7-A26G-01A-21W-A185-09 03ddde4c-32c6-41e6-b587-f510a8e57ba1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26G TCGA-A7-A26G-10A TCGA-A7-A26G-10A-01D-A165-02 a4c85530-1531-4189-ab2b-1ebe3842248c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26G TCGA-A7-A26G-10A TCGA-A7-A26G-10A-01D-A166-01 aaeb68cf-ddd2-4281-a84b-1e9d208175a7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26G TCGA-A7-A26G-10A TCGA-A7-A26G-10A-01D-A166-01 aaeb68cf-ddd2-4281-a84b-1e9d208175a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H09_804514.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-A7-A26G TCGA-A7-A26G-10A TCGA-A7-A26G-10A-01D-A166-01 aaeb68cf-ddd2-4281-a84b-1e9d208175a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H09_804514.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26G TCGA-A7-A26G-10A TCGA-A7-A26G-10A-01D-A166-01 aaeb68cf-ddd2-4281-a84b-1e9d208175a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H09_804514.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26G TCGA-A7-A26G-10A TCGA-A7-A26G-10A-01D-A166-01 aaeb68cf-ddd2-4281-a84b-1e9d208175a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H09_804514.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26G TCGA-A7-A26G-10A TCGA-A7-A26G-10A-01D-A166-01 aaeb68cf-ddd2-4281-a84b-1e9d208175a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H09_804514.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26G TCGA-A7-A26G-10A TCGA-A7-A26G-10A-01D-A166-01 aaeb68cf-ddd2-4281-a84b-1e9d208175a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H09_804514.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26G TCGA-A7-A26G-10A TCGA-A7-A26G-10A-01D-A166-01 aaeb68cf-ddd2-4281-a84b-1e9d208175a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H09_804514.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26G TCGA-A7-A26G-10A TCGA-A7-A26G-10A-01D-A166-01 aaeb68cf-ddd2-4281-a84b-1e9d208175a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H09_804514.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-A7-A26G TCGA-A7-A26G-10A TCGA-A7-A26G-10A-01D-A167-09 5f0452c9-2310-4118-b895-cf8aa79f1ccf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26G TCGA-A7-A26G-10A TCGA-A7-A26G-10A-01W-A185-09 ef49e3ab-f44f-4b4a-9af4-0ca686375ca9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26H TCGA-A7-A26H-01A TCGA-A7-A26H-01A-11D-A165-02 27293b04-cb02-4284-aa93-7bbccc2e1793 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26H TCGA-A7-A26H-01A TCGA-A7-A26H-01A-11D-A166-01 3b70861d-2c7b-4139-a282-6cfdd8aa4386 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26H TCGA-A7-A26H-01A TCGA-A7-A26H-01A-11D-A166-01 3b70861d-2c7b-4139-a282-6cfdd8aa4386 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A02_802406.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-A7-A26H TCGA-A7-A26H-01A TCGA-A7-A26H-01A-11D-A166-01 3b70861d-2c7b-4139-a282-6cfdd8aa4386 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A02_802406.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26H TCGA-A7-A26H-01A TCGA-A7-A26H-01A-11D-A166-01 3b70861d-2c7b-4139-a282-6cfdd8aa4386 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A02_802406.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26H TCGA-A7-A26H-01A TCGA-A7-A26H-01A-11D-A166-01 3b70861d-2c7b-4139-a282-6cfdd8aa4386 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A02_802406.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26H TCGA-A7-A26H-01A TCGA-A7-A26H-01A-11D-A166-01 3b70861d-2c7b-4139-a282-6cfdd8aa4386 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A02_802406.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26H TCGA-A7-A26H-01A TCGA-A7-A26H-01A-11D-A166-01 3b70861d-2c7b-4139-a282-6cfdd8aa4386 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A02_802406.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26H TCGA-A7-A26H-01A TCGA-A7-A26H-01A-11D-A166-01 3b70861d-2c7b-4139-a282-6cfdd8aa4386 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A02_802406.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26H TCGA-A7-A26H-01A TCGA-A7-A26H-01A-11D-A166-01 3b70861d-2c7b-4139-a282-6cfdd8aa4386 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26H TCGA-A7-A26H-01A TCGA-A7-A26H-01A-11D-A16A-05 ec6df98c-4e6b-47bb-baf7-98a6008b40ee DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833159_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-A7-A26H TCGA-A7-A26H-01A TCGA-A7-A26H-01A-11D-A16A-05 ec6df98c-4e6b-47bb-baf7-98a6008b40ee DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833159_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-A7-A26H TCGA-A7-A26H-01A TCGA-A7-A26H-01A-11D-A16A-05 ec6df98c-4e6b-47bb-baf7-98a6008b40ee DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-2.TCGA-A7-A26H-01A-11D-A16A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0 142 07-NOV-11 04.58.21.556000000 PM TCGA-A7-A26H TCGA-A7-A26H-01A TCGA-A7-A26H-01A-11D-A16A-05 ec6df98c-4e6b-47bb-baf7-98a6008b40ee DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-3.TCGA-A7-A26H-01A-11D-A16A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0 142 07-NOV-11 06.37.11.245000000 PM TCGA-A7-A26H TCGA-A7-A26H-01A TCGA-A7-A26H-01A-11R-A168-13 418e8f15-92f3-4724-8439-f6e1d78c085b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26H TCGA-A7-A26H-01A TCGA-A7-A26H-01A-11R-A168-13 418e8f15-92f3-4724-8439-f6e1d78c085b miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26H TCGA-A7-A26H-01A TCGA-A7-A26H-01A-11R-A169-07 d1810175-47a5-4409-b1b8-f5ba78ed1c30 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_621561.TCGA-A7-A26H-01A-11R-A169-07.110919_UNC12-SN629_0141_AB0104ABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A26H TCGA-A7-A26H-01A TCGA-A7-A26H-01A-11R-A169-07 d1810175-47a5-4409-b1b8-f5ba78ed1c30 RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26H TCGA-A7-A26H-10A TCGA-A7-A26H-10A-01D-A165-02 d56c410d-fa89-473a-8db4-74fe35f60ebd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26H TCGA-A7-A26H-10A TCGA-A7-A26H-10A-01D-A166-01 63de6f03-f07e-4786-9a0a-b62a256ffb45 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26H TCGA-A7-A26H-10A TCGA-A7-A26H-10A-01D-A166-01 63de6f03-f07e-4786-9a0a-b62a256ffb45 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A04_802492.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-A7-A26H TCGA-A7-A26H-10A TCGA-A7-A26H-10A-01D-A166-01 63de6f03-f07e-4786-9a0a-b62a256ffb45 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A04_802492.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26H TCGA-A7-A26H-10A TCGA-A7-A26H-10A-01D-A166-01 63de6f03-f07e-4786-9a0a-b62a256ffb45 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A04_802492.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26H TCGA-A7-A26H-10A TCGA-A7-A26H-10A-01D-A166-01 63de6f03-f07e-4786-9a0a-b62a256ffb45 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A04_802492.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26H TCGA-A7-A26H-10A TCGA-A7-A26H-10A-01D-A166-01 63de6f03-f07e-4786-9a0a-b62a256ffb45 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A04_802492.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26H TCGA-A7-A26H-10A TCGA-A7-A26H-10A-01D-A166-01 63de6f03-f07e-4786-9a0a-b62a256ffb45 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A04_802492.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26H TCGA-A7-A26H-10A TCGA-A7-A26H-10A-01D-A166-01 63de6f03-f07e-4786-9a0a-b62a256ffb45 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A04_802492.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26H TCGA-A7-A26H-10A TCGA-A7-A26H-10A-01D-A166-01 63de6f03-f07e-4786-9a0a-b62a256ffb45 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A04_802492.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-A7-A26H TCGA-A7-A26H-10A TCGA-A7-A26H-10A-01D-A167-09 73459869-08fc-408a-bdf0-6ca346113171 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26H TCGA-A7-A26H-10A TCGA-A7-A26H-10A-01W-A184-09 7321fe74-8855-4ffc-a5b3-707168dc198c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26I TCGA-A7-A26I-01A TCGA-A7-A26I-01A-11D-A165-02 04dd7d15-4f91-42eb-a5d0-9a7c150a3adb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26I TCGA-A7-A26I-01A TCGA-A7-A26I-01A-11D-A166-01 eaf26eaa-106e-46e3-9963-c6185c6ec4d7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26I TCGA-A7-A26I-01A TCGA-A7-A26I-01A-11D-A166-01 eaf26eaa-106e-46e3-9963-c6185c6ec4d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B08_802356.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-A7-A26I TCGA-A7-A26I-01A TCGA-A7-A26I-01A-11D-A166-01 eaf26eaa-106e-46e3-9963-c6185c6ec4d7 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26J TCGA-A7-A26J-01A TCGA-A7-A26J-01A-11D-A166-01 be8500f8-6446-4f52-aa16-2ac597e6eb68 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A09_802424.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-A7-A26J TCGA-A7-A26J-01A TCGA-A7-A26J-01A-11D-A166-01 be8500f8-6446-4f52-aa16-2ac597e6eb68 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A09_802424.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26J TCGA-A7-A26J-01A TCGA-A7-A26J-01A-11D-A166-01 be8500f8-6446-4f52-aa16-2ac597e6eb68 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A09_802424.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26J TCGA-A7-A26J-01A TCGA-A7-A26J-01A-11D-A166-01 be8500f8-6446-4f52-aa16-2ac597e6eb68 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A09_802424.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26J TCGA-A7-A26J-01A TCGA-A7-A26J-01A-11D-A166-01 be8500f8-6446-4f52-aa16-2ac597e6eb68 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A09_802424.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26J TCGA-A7-A26J-01A TCGA-A7-A26J-01A-11D-A166-01 be8500f8-6446-4f52-aa16-2ac597e6eb68 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A09_802424.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26J TCGA-A7-A26J-01A TCGA-A7-A26J-01A-11D-A166-01 be8500f8-6446-4f52-aa16-2ac597e6eb68 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A09_802424.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26J TCGA-A7-A26J-01A TCGA-A7-A26J-01A-11D-A166-01 be8500f8-6446-4f52-aa16-2ac597e6eb68 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A09_802424.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-A7-A26J TCGA-A7-A26J-01A TCGA-A7-A26J-01A-11D-A167-09 be2ca34f-5c15-4b38-a207-52df296a98ee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26J TCGA-A7-A26J-01A TCGA-A7-A26J-01A-11D-A16A-05 f811c1fb-e32f-4ad3-878d-7fa52ca51379 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26J TCGA-A7-A26J-01A TCGA-A7-A26J-01A-11D-A16A-05 f811c1fb-e32f-4ad3-878d-7fa52ca51379 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833141_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-A7-A26J TCGA-A7-A26J-01A TCGA-A7-A26J-01A-11D-A16A-05 f811c1fb-e32f-4ad3-878d-7fa52ca51379 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833141_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-A7-A26J TCGA-A7-A26J-01A TCGA-A7-A26J-01A-11D-A16A-05 f811c1fb-e32f-4ad3-878d-7fa52ca51379 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-2.TCGA-A7-A26J-01A-11D-A16A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0 142 07-NOV-11 04.58.21.556000000 PM TCGA-A7-A26J TCGA-A7-A26J-01A TCGA-A7-A26J-01A-11D-A16A-05 f811c1fb-e32f-4ad3-878d-7fa52ca51379 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-3.TCGA-A7-A26J-01A-11D-A16A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0 142 07-NOV-11 06.37.11.245000000 PM TCGA-A7-A26J TCGA-A7-A26J-01A TCGA-A7-A26J-01A-11R-A168-13 3d950760-b4e9-479a-9077-49f9d2d4e4dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26J TCGA-A7-A26J-01A TCGA-A7-A26J-01A-11R-A168-13 3d950760-b4e9-479a-9077-49f9d2d4e4dc miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A7-A26J-01A-11R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-A7-A26J TCGA-A7-A26J-01A TCGA-A7-A26J-01A-11R-A168-13 3d950760-b4e9-479a-9077-49f9d2d4e4dc miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-A7-A26J-01A-11R-A168-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-A7-A26J TCGA-A7-A26J-01A TCGA-A7-A26J-01A-11R-A169-07 ed40061b-ad15-4f91-94ae-ae276394f42d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26J TCGA-A7-A26J-01A TCGA-A7-A26J-01A-11R-A169-07 ed40061b-ad15-4f91-94ae-ae276394f42d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_705366.TCGA-A7-A26J-01A-11R-A169-07.110919_UNC12-SN629_0142_BB00V1ABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A26J TCGA-A7-A26J-01A TCGA-A7-A26J-01A-11R-A169-07 ed40061b-ad15-4f91-94ae-ae276394f42d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_705389.TCGA-A7-A26J-01A-11R-A169-07.110919_UNC12-SN629_0142_BB00V1ABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A26J TCGA-A7-A26J-01A TCGA-A7-A26J-01A-11R-A169-07 ed40061b-ad15-4f91-94ae-ae276394f42d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_705424.TCGA-A7-A26J-01A-11R-A169-07.110919_UNC12-SN629_0142_BB00V1ABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-A7-A26J TCGA-A7-A26J-01A TCGA-A7-A26J-01A-11W-A184-09 eff8d079-ff9d-427c-ae23-b286a9dd0d1f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26J TCGA-A7-A26J-10A TCGA-A7-A26J-10A-01D-A165-02 51577feb-3443-43c4-ade7-0aff41bbbca6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26J TCGA-A7-A26J-10A TCGA-A7-A26J-10A-01D-A166-01 183be256-92c8-41ec-9330-aa4d0de3a47d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-A7-A26J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-A7-A26J TCGA-A7-A26J-10A TCGA-A7-A26J-10A-01D-A166-01 183be256-92c8-41ec-9330-aa4d0de3a47d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G03_802382.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-A7-A26J TCGA-A7-A26J-10A TCGA-A7-A26J-10A-01D-A166-01 183be256-92c8-41ec-9330-aa4d0de3a47d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G03_802382.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26J TCGA-A7-A26J-10A TCGA-A7-A26J-10A-01D-A166-01 183be256-92c8-41ec-9330-aa4d0de3a47d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G03_802382.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26J TCGA-A7-A26J-10A TCGA-A7-A26J-10A-01D-A166-01 183be256-92c8-41ec-9330-aa4d0de3a47d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G03_802382.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26J TCGA-A7-A26J-10A TCGA-A7-A26J-10A-01D-A166-01 183be256-92c8-41ec-9330-aa4d0de3a47d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G03_802382.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26J TCGA-A7-A26J-10A TCGA-A7-A26J-10A-01D-A166-01 183be256-92c8-41ec-9330-aa4d0de3a47d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G03_802382.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26J TCGA-A7-A26J-10A TCGA-A7-A26J-10A-01D-A166-01 183be256-92c8-41ec-9330-aa4d0de3a47d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G03_802382.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-A7-A26J TCGA-A7-A26J-10A TCGA-A7-A26J-10A-01D-A166-01 183be256-92c8-41ec-9330-aa4d0de3a47d SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A7-A3IZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A7-A3IZ TCGA-A7-A3IZ-01A TCGA-A7-A3IZ-01A-11R-A214-13 83ea454b-0747-4a9f-8545-c3062dd26395 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A7-A3IZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A7-A3IZ TCGA-A7-A3IZ-10A TCGA-A7-A3IZ-10A-01D-A20R-01 a21f7ac2-f782-4729-a49e-adb013e9c9c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A7-A3IZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A7-A3IZ TCGA-A7-A3IZ-10A TCGA-A7-A3IZ-10A-01D-A20S-09 46160082-58d4-47f5-a49a-505ca987fd79 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A7-A3IZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A7-A3J0 TCGA-A7-A3J0-01A TCGA-A7-A3J0-01A-11D-A20R-01 23d1f5b1-6b5f-45f3-b30a-b6b04692ba68 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A7-A3J0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A7-A3J0 TCGA-A7-A3J0-01A TCGA-A7-A3J0-01A-11D-A20S-09 2fe4edb4-9780-457f-95a5-346ca22eac20 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A7-A3J0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A7-A3J0 TCGA-A7-A3J0-01A TCGA-A7-A3J0-01A-11D-A212-05 ceab59bd-536d-4a43-86e2-ceff2665cf89 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A7-A3J0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A7-A3J0 TCGA-A7-A3J0-01A TCGA-A7-A3J0-01A-11R-A213-07 1fbf8004-0091-4eb0-9042-d2f1a5174abe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A7-A3J0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A7-A3J0 TCGA-A7-A3J0-01A TCGA-A7-A3J0-01A-11R-A214-13 36311a19-c6ed-45e7-afde-cc5cee91544d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A7-A3J0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A7-A3J0 TCGA-A7-A3J0-10A TCGA-A7-A3J0-10A-01D-A20R-01 37202629-8614-46e0-9b64-b982f5e1e424 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A7-A3J0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A7-A3J0 TCGA-A7-A3J0-10A TCGA-A7-A3J0-10A-01D-A20S-09 e7ddf4f3-409f-496f-be72-e3115f128136 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A7-A3J0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A7-A3J1 TCGA-A7-A3J1-01A TCGA-A7-A3J1-01A-11D-A20R-01 bcc81b67-ecd6-442f-abc4-dd5b916bea85 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A7-A3J1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A7-A3J1 TCGA-A7-A3J1-01A TCGA-A7-A3J1-01A-11D-A20S-09 2ce9601e-907b-4ab4-b0c6-4f0a1b2b9011 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A7-A3J1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A7-A3J1 TCGA-A7-A3J1-01A TCGA-A7-A3J1-01A-11D-A212-05 c923f724-e50f-4df3-8121-c191cfcab1ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A7-A3J1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A7-A3J1 TCGA-A7-A3J1-01A TCGA-A7-A3J1-01A-11R-A213-07 3b042185-867f-492b-a448-7c51e05f9b42 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A7-A3J1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A7-A3J1 TCGA-A7-A3J1-01A TCGA-A7-A3J1-01A-11R-A214-13 247e363d-9321-4272-8a86-6fd82b0e7745 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A7-A3J1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A7-A3J1 TCGA-A7-A3J1-10A TCGA-A7-A3J1-10A-01D-A20R-01 844ec903-446a-4976-8856-fe7435a9997e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A7-A3J1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A7-A3J1 TCGA-A7-A3J1-10A TCGA-A7-A3J1-10A-01D-A20S-09 bcb23fdf-5ae8-4659-8e65-1f8a7f0b44ea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-A7-A3J1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A00Y-05 42249219-7880-48df-b19b-bf3240803c8e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A00Y-05 42249219-7880-48df-b19b-bf3240803c8e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 61 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A00Y-05 42249219-7880-48df-b19b-bf3240803c8e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A06N-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A00Y-05 42249219-7880-48df-b19b-bf3240803c8e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A06N-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 61 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A00Y-05 42249219-7880-48df-b19b-bf3240803c8e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A06N-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A00Y-05 42249219-7880-48df-b19b-bf3240803c8e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A06N-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 61 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A00Y-05 42249219-7880-48df-b19b-bf3240803c8e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A06N-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A00Y-05 42249219-7880-48df-b19b-bf3240803c8e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A06N-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 61 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A011-01 0a28c663-7cc6-466c-b64d-f9d8d6d6b4c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A011-01 0a28c663-7cc6-466c-b64d-f9d8d6d6b4c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 61 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A011-01 0a28c663-7cc6-466c-b64d-f9d8d6d6b4c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C11_628374.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A011-01 0a28c663-7cc6-466c-b64d-f9d8d6d6b4c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C11_628374.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 61 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A011-01 0a28c663-7cc6-466c-b64d-f9d8d6d6b4c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C11_628374.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A011-01 0a28c663-7cc6-466c-b64d-f9d8d6d6b4c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C11_628374.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 61 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A011-01 0a28c663-7cc6-466c-b64d-f9d8d6d6b4c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C11_628374.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A011-01 0a28c663-7cc6-466c-b64d-f9d8d6d6b4c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C11_628374.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 61 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A011-01 0a28c663-7cc6-466c-b64d-f9d8d6d6b4c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C11_628374.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A011-01 0a28c663-7cc6-466c-b64d-f9d8d6d6b4c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C11_628374.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 61 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A011-01 0a28c663-7cc6-466c-b64d-f9d8d6d6b4c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C11_628374.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A011-01 0a28c663-7cc6-466c-b64d-f9d8d6d6b4c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C11_628374.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 61 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A011-01 0a28c663-7cc6-466c-b64d-f9d8d6d6b4c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C11_628374.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A011-01 0a28c663-7cc6-466c-b64d-f9d8d6d6b4c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C11_628374.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 61 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A011-01 0a28c663-7cc6-466c-b64d-f9d8d6d6b4c8 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C11_628374.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A011-01 0a28c663-7cc6-466c-b64d-f9d8d6d6b4c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C11_628374.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 61 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A015-09 1c286df6-9314-40a5-a0cb-246da204ae67 Complete Clinical Set bio 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1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A016-08 db24c6e8-a856-45a3-8494-c93c5074e8a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 61 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A068-02 4ecb927d-a8e2-4e68-87ae-7e0ba9cb7680 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11D-A068-02 4ecb927d-a8e2-4e68-87ae-7e0ba9cb7680 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 61 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11R-A00Z-07 a14dc21a-6a46-4be8-9247-76cbc70dfe8b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11R-A00Z-07 a14dc21a-6a46-4be8-9247-76cbc70dfe8b Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_602346.TCGA-A8-A06N-01A-11R-A00Z-07.111011_UNC12-SN629_0149_AB062VABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11R-A010-13 f11dbd8d-5285-45ec-819f-7a9d0a410cf2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11R-A010-13 f11dbd8d-5285-45ec-819f-7a9d0a410cf2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 61 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11R-A010-13 f11dbd8d-5285-45ec-819f-7a9d0a410cf2 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A06N-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11R-A010-13 f11dbd8d-5285-45ec-819f-7a9d0a410cf2 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A06N-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11R-A010-13 f11dbd8d-5285-45ec-819f-7a9d0a410cf2 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A06N-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11R-A010-13 f11dbd8d-5285-45ec-819f-7a9d0a410cf2 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A06N-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11W-A019-09 03d266a3-eb3e-4893-af6b-cb70d197d98f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11W-A019-09 03d266a3-eb3e-4893-af6b-cb70d197d98f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 61 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11W-A019-09 03d266a3-eb3e-4893-af6b-cb70d197d98f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11W-A019-09 03d266a3-eb3e-4893-af6b-cb70d197d98f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11W-A020-08 dc451efa-2605-492a-b44d-47dddcf6924f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11W-A020-08 dc451efa-2605-492a-b44d-47dddcf6924f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 61 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11X-A023-09 aaf3db37-4603-43e9-9f38-9c4f4e564f33 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11X-A023-09 aaf3db37-4603-43e9-9f38-9c4f4e564f33 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 61 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11X-A024-08 2831918c-c75e-444d-8588-5e97be17cdd7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-11X-A024-08 2831918c-c75e-444d-8588-5e97be17cdd7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 61 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-12R-A056-07 b140fccd-5907-4b21-9ed9-a6bdaeb2de53 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-12R-A056-07 b140fccd-5907-4b21-9ed9-a6bdaeb2de53 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 61 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-12R-A056-07 b140fccd-5907-4b21-9ed9-a6bdaeb2de53 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012153_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-12R-A056-07 b140fccd-5907-4b21-9ed9-a6bdaeb2de53 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012153_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 61 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-12R-A056-07 b140fccd-5907-4b21-9ed9-a6bdaeb2de53 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012153_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-12R-A056-07 b140fccd-5907-4b21-9ed9-a6bdaeb2de53 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012153_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 61 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-12R-A056-07 b140fccd-5907-4b21-9ed9-a6bdaeb2de53 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012153_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A06N TCGA-A8-A06N-01A TCGA-A8-A06N-01A-12R-A056-07 b140fccd-5907-4b21-9ed9-a6bdaeb2de53 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012153_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 61 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A06N TCGA-A8-A06N-10A TCGA-A8-A06N-10A-01D-A012-01 2b6d80b2-c681-414c-ab4d-c29f47d9a26e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-10A TCGA-A8-A06N-10A-01D-A012-01 2b6d80b2-c681-414c-ab4d-c29f47d9a26e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G03_628326.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A06N TCGA-A8-A06N-10A TCGA-A8-A06N-10A-01D-A012-01 2b6d80b2-c681-414c-ab4d-c29f47d9a26e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G03_628326.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06N TCGA-A8-A06N-10A TCGA-A8-A06N-10A-01D-A012-01 2b6d80b2-c681-414c-ab4d-c29f47d9a26e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G03_628326.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06N TCGA-A8-A06N-10A TCGA-A8-A06N-10A-01D-A012-01 2b6d80b2-c681-414c-ab4d-c29f47d9a26e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G03_628326.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06N TCGA-A8-A06N-10A TCGA-A8-A06N-10A-01D-A012-01 2b6d80b2-c681-414c-ab4d-c29f47d9a26e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G03_628326.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06N TCGA-A8-A06N-10A TCGA-A8-A06N-10A-01D-A012-01 2b6d80b2-c681-414c-ab4d-c29f47d9a26e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G03_628326.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06N TCGA-A8-A06N-10A TCGA-A8-A06N-10A-01D-A012-01 2b6d80b2-c681-414c-ab4d-c29f47d9a26e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G03_628326.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06N TCGA-A8-A06N-10A TCGA-A8-A06N-10A-01D-A012-01 2b6d80b2-c681-414c-ab4d-c29f47d9a26e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G03_628326.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A06N TCGA-A8-A06N-10A TCGA-A8-A06N-10A-01D-A017-09 0e622e33-fedc-480e-8624-da9a4fa8f913 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-10A TCGA-A8-A06N-10A-01D-A018-08 c395d551-49b1-4809-8e34-f7e7649a5500 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-10A TCGA-A8-A06N-10A-01D-A069-02 3020b87f-4c8d-4e10-ac3b-391d0c60b3df Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-10A TCGA-A8-A06N-10A-01W-A021-09 a29ad24e-ea1d-4640-84c8-c0cc08bfb173 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-10A TCGA-A8-A06N-10A-01W-A021-09 a29ad24e-ea1d-4640-84c8-c0cc08bfb173 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A06N TCGA-A8-A06N-10A TCGA-A8-A06N-10A-01W-A022-08 9d11aca3-7b7a-48cc-beb1-895d33303425 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-10A TCGA-A8-A06N-10A-01X-A025-09 6c8afcf9-7a8e-4121-9ae0-d6bdbd28b734 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06N TCGA-A8-A06N-10A TCGA-A8-A06N-10A-01X-A026-08 928d217c-c207-4f41-b346-967a07ef6c71 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11D-A00Y-05 18bcfe41-a025-4ad3-b6c5-6d9042ea2df7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11D-A00Y-05 18bcfe41-a025-4ad3-b6c5-6d9042ea2df7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A06O-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11D-A00Y-05 18bcfe41-a025-4ad3-b6c5-6d9042ea2df7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A06O-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11D-A00Y-05 18bcfe41-a025-4ad3-b6c5-6d9042ea2df7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A06O-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11D-A011-01 dc99456b-c429-4e33-8ceb-26dd8d43b78a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11D-A011-01 dc99456b-c429-4e33-8ceb-26dd8d43b78a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C03_628324.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11D-A011-01 dc99456b-c429-4e33-8ceb-26dd8d43b78a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C03_628324.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11D-A011-01 dc99456b-c429-4e33-8ceb-26dd8d43b78a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C03_628324.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11D-A011-01 dc99456b-c429-4e33-8ceb-26dd8d43b78a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C03_628324.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11D-A011-01 dc99456b-c429-4e33-8ceb-26dd8d43b78a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C03_628324.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11D-A011-01 dc99456b-c429-4e33-8ceb-26dd8d43b78a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C03_628324.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11D-A011-01 dc99456b-c429-4e33-8ceb-26dd8d43b78a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C03_628324.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11D-A011-01 dc99456b-c429-4e33-8ceb-26dd8d43b78a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C03_628324.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11D-A015-09 86bacc33-9b69-47a9-a1aa-d52774ca6a3d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11D-A016-08 40a4de65-9d7a-4572-92de-b2fc26e74f4e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11D-A068-02 256c8957-d44a-430f-8218-d24164b40e34 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11R-A00Z-07 7dbd8795-b264-4f68-bdea-4cfe39884864 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11R-A00Z-07 7dbd8795-b264-4f68-bdea-4cfe39884864 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011885_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11R-A00Z-07 7dbd8795-b264-4f68-bdea-4cfe39884864 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011885_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11R-A00Z-07 7dbd8795-b264-4f68-bdea-4cfe39884864 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011885_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11R-A00Z-07 7dbd8795-b264-4f68-bdea-4cfe39884864 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_608179.TCGA-A8-A06O-01A-11R-A00Z-07.110228_UNC10-SN254_0198_BB041RABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11R-A00Z-07 7dbd8795-b264-4f68-bdea-4cfe39884864 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_608183.TCGA-A8-A06O-01A-11R-A00Z-07.110228_UNC10-SN254_0198_BB041RABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11R-A00Z-07 7dbd8795-b264-4f68-bdea-4cfe39884864 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_608349.TCGA-A8-A06O-01A-11R-A00Z-07.110228_UNC10-SN254_0198_BB041RABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11R-A010-13 2bc1d13f-ee13-4c1b-b50a-9e3a8a95e17a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11R-A010-13 2bc1d13f-ee13-4c1b-b50a-9e3a8a95e17a miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A06O-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11R-A010-13 2bc1d13f-ee13-4c1b-b50a-9e3a8a95e17a miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A06O-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11W-A019-09 29cd408e-a04b-418a-85e2-6ef95840ddbc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11W-A019-09 29cd408e-a04b-418a-85e2-6ef95840ddbc Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11W-A020-08 f18081c6-a0e5-464d-9e57-208204129210 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11X-A023-09 f0491428-46e9-4ea7-8bcd-c9533c099e90 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06O TCGA-A8-A06O-01A TCGA-A8-A06O-01A-11X-A024-08 f9d2b3d1-47fd-47d0-bbff-678972e5abb5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06O TCGA-A8-A06O-10A TCGA-A8-A06O-10A-01D-A012-01 fa026405-638c-4eb1-9a55-385500e5a289 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06O TCGA-A8-A06O-10A TCGA-A8-A06O-10A-01D-A012-01 fa026405-638c-4eb1-9a55-385500e5a289 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F01_628342.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A06O TCGA-A8-A06O-10A TCGA-A8-A06O-10A-01D-A012-01 fa026405-638c-4eb1-9a55-385500e5a289 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F01_628342.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06O TCGA-A8-A06O-10A TCGA-A8-A06O-10A-01D-A012-01 fa026405-638c-4eb1-9a55-385500e5a289 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F01_628342.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06O TCGA-A8-A06O-10A TCGA-A8-A06O-10A-01D-A012-01 fa026405-638c-4eb1-9a55-385500e5a289 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F01_628342.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06O TCGA-A8-A06O-10A TCGA-A8-A06O-10A-01D-A012-01 fa026405-638c-4eb1-9a55-385500e5a289 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F01_628342.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06O TCGA-A8-A06O-10A TCGA-A8-A06O-10A-01D-A012-01 fa026405-638c-4eb1-9a55-385500e5a289 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F01_628342.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06O TCGA-A8-A06O-10A TCGA-A8-A06O-10A-01D-A012-01 fa026405-638c-4eb1-9a55-385500e5a289 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F01_628342.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06O TCGA-A8-A06O-10A TCGA-A8-A06O-10A-01D-A012-01 fa026405-638c-4eb1-9a55-385500e5a289 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F01_628342.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A06O TCGA-A8-A06O-10A TCGA-A8-A06O-10A-01D-A017-09 e5a40f1d-7533-4d57-b152-e9a0ecb1ef02 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06O TCGA-A8-A06O-10A TCGA-A8-A06O-10A-01D-A018-08 a1f39466-cf10-4ed3-bbc6-d2cc0e49111a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06O TCGA-A8-A06O-10A TCGA-A8-A06O-10A-01D-A069-02 50a4ce88-92a2-4859-bea4-91776a3a7b8f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06O TCGA-A8-A06O-10A TCGA-A8-A06O-10A-01W-A021-09 62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06O TCGA-A8-A06O-10A TCGA-A8-A06O-10A-01W-A021-09 62c57a4a-eaa6-42ee-b8b2-80d44d3edcf8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A06O TCGA-A8-A06O-10A TCGA-A8-A06O-10A-01W-A022-08 0de7a3fe-b7e7-4302-a9f7-684e9dec81e7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06O TCGA-A8-A06O-10A TCGA-A8-A06O-10A-01X-A025-09 3ca092cc-d8f0-4b5b-b1e0-95ef672774a0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06O TCGA-A8-A06O-10A TCGA-A8-A06O-10A-01X-A026-08 348db7d6-903b-4e7d-8862-2c3555ec0031 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11D-A00Y-05 293a003d-922e-49c0-a72f-93d89e323321 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11D-A00Y-05 293a003d-922e-49c0-a72f-93d89e323321 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A06P-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11D-A00Y-05 293a003d-922e-49c0-a72f-93d89e323321 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A06P-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11D-A00Y-05 293a003d-922e-49c0-a72f-93d89e323321 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A06P-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11D-A011-01 90ef86f0-9b29-4f97-b8c8-128a5771ed75 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11D-A011-01 90ef86f0-9b29-4f97-b8c8-128a5771ed75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G12_628256.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11D-A011-01 90ef86f0-9b29-4f97-b8c8-128a5771ed75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G12_628256.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11D-A011-01 90ef86f0-9b29-4f97-b8c8-128a5771ed75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G12_628256.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11D-A011-01 90ef86f0-9b29-4f97-b8c8-128a5771ed75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G12_628256.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11D-A011-01 90ef86f0-9b29-4f97-b8c8-128a5771ed75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G12_628256.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11D-A011-01 90ef86f0-9b29-4f97-b8c8-128a5771ed75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G12_628256.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11D-A011-01 90ef86f0-9b29-4f97-b8c8-128a5771ed75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G12_628256.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11D-A011-01 90ef86f0-9b29-4f97-b8c8-128a5771ed75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G12_628256.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11D-A015-09 893efe20-9c26-482e-8f66-d8dea07c9b0b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11D-A016-08 74ded439-12a7-4279-a446-66845ec86212 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11D-A068-02 c61fb070-f9e6-4351-a7ac-e78f3d2072a3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11R-A00Z-07 9d8f2b85-f203-47ac-8217-987640f89b26 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11R-A00Z-07 9d8f2b85-f203-47ac-8217-987640f89b26 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012015_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11R-A00Z-07 9d8f2b85-f203-47ac-8217-987640f89b26 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012015_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11R-A00Z-07 9d8f2b85-f203-47ac-8217-987640f89b26 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012015_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11R-A00Z-07 9d8f2b85-f203-47ac-8217-987640f89b26 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_660398.TCGA-A8-A06P-01A-11R-A00Z-07.110308_UNC9-SN296_0158_BB042UABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11R-A00Z-07 9d8f2b85-f203-47ac-8217-987640f89b26 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_660406.TCGA-A8-A06P-01A-11R-A00Z-07.110308_UNC9-SN296_0158_BB042UABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11R-A00Z-07 9d8f2b85-f203-47ac-8217-987640f89b26 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_660437.TCGA-A8-A06P-01A-11R-A00Z-07.110308_UNC9-SN296_0158_BB042UABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11R-A010-13 f476b286-94cd-4836-b484-b461bcb058c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11R-A010-13 f476b286-94cd-4836-b484-b461bcb058c8 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A06P-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11R-A010-13 f476b286-94cd-4836-b484-b461bcb058c8 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A06P-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11W-A019-09 239b3d55-c5d6-4478-9b7b-1cbad3c03c81 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11W-A019-09 239b3d55-c5d6-4478-9b7b-1cbad3c03c81 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11W-A020-08 fc288cf0-35ae-4352-84f7-10ec781d013a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11X-A023-09 9420c005-20da-4ee4-9942-c1d335974f9b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06P TCGA-A8-A06P-01A TCGA-A8-A06P-01A-11X-A024-08 b9bb7884-e5a3-4beb-938f-2dffb93b9950 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06P TCGA-A8-A06P-10A TCGA-A8-A06P-10A-01D-A012-01 999722b7-c4b0-47fc-bc83-af5564cd8ec1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06P TCGA-A8-A06P-10A TCGA-A8-A06P-10A-01D-A012-01 999722b7-c4b0-47fc-bc83-af5564cd8ec1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D12_628362.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A06P TCGA-A8-A06P-10A TCGA-A8-A06P-10A-01D-A012-01 999722b7-c4b0-47fc-bc83-af5564cd8ec1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D12_628362.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06P TCGA-A8-A06P-10A TCGA-A8-A06P-10A-01D-A012-01 999722b7-c4b0-47fc-bc83-af5564cd8ec1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D12_628362.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06P TCGA-A8-A06P-10A TCGA-A8-A06P-10A-01D-A012-01 999722b7-c4b0-47fc-bc83-af5564cd8ec1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D12_628362.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06P TCGA-A8-A06P-10A TCGA-A8-A06P-10A-01D-A012-01 999722b7-c4b0-47fc-bc83-af5564cd8ec1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D12_628362.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06P TCGA-A8-A06P-10A TCGA-A8-A06P-10A-01D-A012-01 999722b7-c4b0-47fc-bc83-af5564cd8ec1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D12_628362.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06P TCGA-A8-A06P-10A TCGA-A8-A06P-10A-01D-A012-01 999722b7-c4b0-47fc-bc83-af5564cd8ec1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D12_628362.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06P TCGA-A8-A06P-10A TCGA-A8-A06P-10A-01D-A012-01 999722b7-c4b0-47fc-bc83-af5564cd8ec1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D12_628362.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A06P TCGA-A8-A06P-10A TCGA-A8-A06P-10A-01D-A017-09 807736fb-8a25-4480-bfea-46e305d637b5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06P TCGA-A8-A06P-10A TCGA-A8-A06P-10A-01D-A018-08 f3e11eb8-4a60-40a2-b3a5-29c090122804 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06P TCGA-A8-A06P-10A TCGA-A8-A06P-10A-01D-A069-02 8da23ebd-adfa-42df-a8e7-67238a1c549b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06P TCGA-A8-A06P-10A TCGA-A8-A06P-10A-01W-A021-09 f8f99cc8-0355-4bf9-b26e-65603682d0f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06P TCGA-A8-A06P-10A TCGA-A8-A06P-10A-01W-A021-09 f8f99cc8-0355-4bf9-b26e-65603682d0f9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A06P TCGA-A8-A06P-10A TCGA-A8-A06P-10A-01W-A022-08 8d956ba3-060a-4b76-8940-0807684e5684 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06P TCGA-A8-A06P-10A TCGA-A8-A06P-10A-01X-A025-09 1bf1c656-8ad7-43bb-9171-d17e55a5765f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06P TCGA-A8-A06P-10A TCGA-A8-A06P-10A-01X-A026-08 636e57b9-0d6e-4c15-96e2-13264115fcea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11D-A032-05 a450b68d-228f-48e6-8b75-e1f8af22d08c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11D-A032-05 a450b68d-228f-48e6-8b75-e1f8af22d08c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A8-A06Q-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11D-A032-05 a450b68d-228f-48e6-8b75-e1f8af22d08c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A8-A06Q-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11D-A032-05 a450b68d-228f-48e6-8b75-e1f8af22d08c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A8-A06Q-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11D-A033-02 8b9ccf5c-9ca8-4e65-8d57-59791c0c8341 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11D-A036-01 ac9a0bec-1011-41da-b5b4-774fed87b5b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11D-A036-01 ac9a0bec-1011-41da-b5b4-774fed87b5b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C09_666914.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11D-A036-01 ac9a0bec-1011-41da-b5b4-774fed87b5b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C09_666914.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11D-A036-01 ac9a0bec-1011-41da-b5b4-774fed87b5b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C09_666914.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11D-A036-01 ac9a0bec-1011-41da-b5b4-774fed87b5b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C09_666914.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11D-A036-01 ac9a0bec-1011-41da-b5b4-774fed87b5b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C09_666914.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11D-A036-01 ac9a0bec-1011-41da-b5b4-774fed87b5b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C09_666914.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11D-A036-01 ac9a0bec-1011-41da-b5b4-774fed87b5b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C09_666914.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11D-A036-01 ac9a0bec-1011-41da-b5b4-774fed87b5b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C09_666914.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11D-A044-08 d956f55b-f6e3-4fe0-8e18-0c391c544f00 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11D-A045-09 4ca9bb9b-7711-4ebf-911e-0a92a7c9f49d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11R-A034-07 0e2a3a2c-173a-43b8-bd7d-0c09dfa8a2ae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11R-A034-07 0e2a3a2c-173a-43b8-bd7d-0c09dfa8a2ae Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012071_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11R-A034-07 0e2a3a2c-173a-43b8-bd7d-0c09dfa8a2ae Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012071_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11R-A034-07 0e2a3a2c-173a-43b8-bd7d-0c09dfa8a2ae Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012071_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11R-A034-07 0e2a3a2c-173a-43b8-bd7d-0c09dfa8a2ae RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446419.TCGA-A8-A06Q-01A-11R-A034-07.110225_UNC12-SN629_0064_BB041HABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11R-A034-07 0e2a3a2c-173a-43b8-bd7d-0c09dfa8a2ae RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446421.TCGA-A8-A06Q-01A-11R-A034-07.110225_UNC12-SN629_0064_BB041HABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11R-A034-07 0e2a3a2c-173a-43b8-bd7d-0c09dfa8a2ae RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446458.TCGA-A8-A06Q-01A-11R-A034-07.110225_UNC12-SN629_0064_BB041HABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11R-A035-13 e4d6ca69-4bd9-4b72-b17c-24daff3bc6af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11R-A035-13 e4d6ca69-4bd9-4b72-b17c-24daff3bc6af miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A06Q-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11R-A035-13 e4d6ca69-4bd9-4b72-b17c-24daff3bc6af miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A06Q-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11W-A050-09 473d5422-978a-48be-be32-2b7516d6d2d5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11W-A050-09 473d5422-978a-48be-be32-2b7516d6d2d5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11W-A050-09 473d5422-978a-48be-be32-2b7516d6d2d5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11W-A051-08 c0b73753-1e1d-484b-af5c-a2a047354a03 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11X-A048-08 a24ce57b-f806-4349-949e-c15ef7877f93 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-01A TCGA-A8-A06Q-01A-11X-A049-09 f7ea5ed8-58f1-48bf-9598-e5f55b3fd7c6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-10A TCGA-A8-A06Q-10A-01D-A031-02 fe063da0-9831-4657-9604-893f0e89ae03 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-10A TCGA-A8-A06Q-10A-01D-A037-01 d820bb90-f9a3-4f58-bc49-6e022a0db451 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-10A TCGA-A8-A06Q-10A-01D-A037-01 d820bb90-f9a3-4f58-bc49-6e022a0db451 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B07_666956.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A8-A06Q TCGA-A8-A06Q-10A TCGA-A8-A06Q-10A-01D-A037-01 d820bb90-f9a3-4f58-bc49-6e022a0db451 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B07_666956.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-10A TCGA-A8-A06Q-10A-01D-A037-01 d820bb90-f9a3-4f58-bc49-6e022a0db451 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B07_666956.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-10A TCGA-A8-A06Q-10A-01D-A037-01 d820bb90-f9a3-4f58-bc49-6e022a0db451 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B07_666956.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-10A TCGA-A8-A06Q-10A-01D-A037-01 d820bb90-f9a3-4f58-bc49-6e022a0db451 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B07_666956.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-10A TCGA-A8-A06Q-10A-01D-A037-01 d820bb90-f9a3-4f58-bc49-6e022a0db451 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B07_666956.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-10A TCGA-A8-A06Q-10A-01D-A037-01 d820bb90-f9a3-4f58-bc49-6e022a0db451 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B07_666956.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-10A TCGA-A8-A06Q-10A-01D-A037-01 d820bb90-f9a3-4f58-bc49-6e022a0db451 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B07_666956.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-10A TCGA-A8-A06Q-10A-01D-A046-08 e105ec19-566d-4a2f-993b-12cd710a9dc0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-10A TCGA-A8-A06Q-10A-01D-A047-09 0ee14b03-4d4e-4006-b583-474deff50acb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-10A TCGA-A8-A06Q-10A-01W-A053-08 d2fc8d2c-b01d-467c-85ef-4a4228847186 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-10A TCGA-A8-A06Q-10A-01W-A055-09 c66176ec-6088-430c-a3f3-3c03ba2b5b1a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-10A TCGA-A8-A06Q-10A-01W-A055-09 c66176ec-6088-430c-a3f3-3c03ba2b5b1a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-10A TCGA-A8-A06Q-10A-01W-A055-09 c66176ec-6088-430c-a3f3-3c03ba2b5b1a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-10A TCGA-A8-A06Q-10A-01X-A052-08 e8331ad4-86ba-4818-8df8-ed49840f758e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A06Q TCGA-A8-A06Q-10A TCGA-A8-A06Q-10A-01X-A054-09 632f628b-99c3-4860-baf3-679a6de8f082 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11D-A00Y-05 57a72ac6-c5af-4f02-98c1-47e26ab935cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11D-A00Y-05 57a72ac6-c5af-4f02-98c1-47e26ab935cb DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A06R-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11D-A00Y-05 57a72ac6-c5af-4f02-98c1-47e26ab935cb DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A06R-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11D-A00Y-05 57a72ac6-c5af-4f02-98c1-47e26ab935cb DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A06R-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11D-A011-01 aa0e910d-28fb-41f0-b545-601feb989ee1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11D-A011-01 aa0e910d-28fb-41f0-b545-601feb989ee1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A02_628278.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11D-A011-01 aa0e910d-28fb-41f0-b545-601feb989ee1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A02_628278.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11D-A011-01 aa0e910d-28fb-41f0-b545-601feb989ee1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A02_628278.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11D-A011-01 aa0e910d-28fb-41f0-b545-601feb989ee1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A02_628278.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11D-A011-01 aa0e910d-28fb-41f0-b545-601feb989ee1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A02_628278.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11D-A011-01 aa0e910d-28fb-41f0-b545-601feb989ee1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A02_628278.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11D-A011-01 aa0e910d-28fb-41f0-b545-601feb989ee1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A02_628278.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11D-A011-01 aa0e910d-28fb-41f0-b545-601feb989ee1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A02_628278.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11D-A015-09 c6b00eff-6c4e-4d79-a9b1-8fb1f3090816 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11D-A015-09 c6b00eff-6c4e-4d79-a9b1-8fb1f3090816 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11D-A016-08 dcda5b27-6d74-4691-aef3-89703a910dce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11D-A068-02 adb7cee6-c05c-45e7-9e06-25e1a51698bf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11R-A00Z-07 e2d7656c-0d06-427c-998c-c26ba4a1def4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11R-A00Z-07 e2d7656c-0d06-427c-998c-c26ba4a1def4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011815_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11R-A00Z-07 e2d7656c-0d06-427c-998c-c26ba4a1def4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011815_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11R-A00Z-07 e2d7656c-0d06-427c-998c-c26ba4a1def4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011815_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11R-A010-13 dec94bd9-16eb-4100-a121-fadb5d823e54 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11R-A010-13 dec94bd9-16eb-4100-a121-fadb5d823e54 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A06R-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11R-A010-13 dec94bd9-16eb-4100-a121-fadb5d823e54 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A06R-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11W-A019-09 a1bb05f0-3926-458a-8ffc-3cfee1df4485 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11W-A020-08 6c0c29a6-8e25-4876-b505-c418998de2cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11X-A023-09 44e1352f-482d-4394-a7f9-92502982a786 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06R TCGA-A8-A06R-01A TCGA-A8-A06R-01A-11X-A024-08 fba67a89-b679-4369-91d2-fb86598cfa00 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06R TCGA-A8-A06R-10A TCGA-A8-A06R-10A-01D-A012-01 1fed2fa6-fa1d-42ab-a7a7-096195e3d010 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06R TCGA-A8-A06R-10A TCGA-A8-A06R-10A-01D-A012-01 1fed2fa6-fa1d-42ab-a7a7-096195e3d010 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C04_628394.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A06R TCGA-A8-A06R-10A TCGA-A8-A06R-10A-01D-A012-01 1fed2fa6-fa1d-42ab-a7a7-096195e3d010 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C04_628394.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06R TCGA-A8-A06R-10A TCGA-A8-A06R-10A-01D-A012-01 1fed2fa6-fa1d-42ab-a7a7-096195e3d010 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C04_628394.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06R TCGA-A8-A06R-10A TCGA-A8-A06R-10A-01D-A012-01 1fed2fa6-fa1d-42ab-a7a7-096195e3d010 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C04_628394.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06R TCGA-A8-A06R-10A TCGA-A8-A06R-10A-01D-A012-01 1fed2fa6-fa1d-42ab-a7a7-096195e3d010 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C04_628394.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06R TCGA-A8-A06R-10A TCGA-A8-A06R-10A-01D-A012-01 1fed2fa6-fa1d-42ab-a7a7-096195e3d010 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C04_628394.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06R TCGA-A8-A06R-10A TCGA-A8-A06R-10A-01D-A012-01 1fed2fa6-fa1d-42ab-a7a7-096195e3d010 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C04_628394.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06R TCGA-A8-A06R-10A TCGA-A8-A06R-10A-01D-A012-01 1fed2fa6-fa1d-42ab-a7a7-096195e3d010 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C04_628394.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A06R TCGA-A8-A06R-10A TCGA-A8-A06R-10A-01D-A017-09 1c403cce-4beb-499e-82a5-e747bf2b04b7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06R TCGA-A8-A06R-10A TCGA-A8-A06R-10A-01D-A018-08 c52624ea-3c48-4570-8013-f1d1a0b8ac97 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06R TCGA-A8-A06R-10A TCGA-A8-A06R-10A-01D-A069-02 ac225cd0-ee43-4647-98d3-07632ec90f00 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06R TCGA-A8-A06R-10A TCGA-A8-A06R-10A-01W-A021-09 bf64ab88-5956-4a6a-a303-6a2cbb82f649 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06R TCGA-A8-A06R-10A TCGA-A8-A06R-10A-01W-A021-09 bf64ab88-5956-4a6a-a303-6a2cbb82f649 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A06R TCGA-A8-A06R-10A TCGA-A8-A06R-10A-01W-A022-08 e1ce3de4-adad-413d-a1b6-dc4bf4abf118 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06R TCGA-A8-A06R-10A TCGA-A8-A06R-10A-01X-A025-09 5fe7e8a2-a58a-41e1-8b7c-d220ab63774d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06R TCGA-A8-A06R-10A TCGA-A8-A06R-10A-01X-A026-08 322e2762-d5b1-4563-ab5e-77c3c6d01b2c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11D-A00Y-05 e7544fd8-3abf-455a-81d1-4caf083374c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11D-A00Y-05 e7544fd8-3abf-455a-81d1-4caf083374c8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A06T-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11D-A00Y-05 e7544fd8-3abf-455a-81d1-4caf083374c8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A06T-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11D-A00Y-05 e7544fd8-3abf-455a-81d1-4caf083374c8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A06T-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11D-A011-01 768075b7-62ca-4f16-b1a6-7700c94a146b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11D-A011-01 768075b7-62ca-4f16-b1a6-7700c94a146b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D09_628270.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11D-A011-01 768075b7-62ca-4f16-b1a6-7700c94a146b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D09_628270.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11D-A011-01 768075b7-62ca-4f16-b1a6-7700c94a146b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D09_628270.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11D-A011-01 768075b7-62ca-4f16-b1a6-7700c94a146b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D09_628270.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11D-A011-01 768075b7-62ca-4f16-b1a6-7700c94a146b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D09_628270.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11D-A011-01 768075b7-62ca-4f16-b1a6-7700c94a146b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D09_628270.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11D-A011-01 768075b7-62ca-4f16-b1a6-7700c94a146b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D09_628270.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11D-A011-01 768075b7-62ca-4f16-b1a6-7700c94a146b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D09_628270.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11D-A015-09 cc619658-e6a5-4440-b6a5-4806accca448 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11D-A016-08 a5301520-74f0-4404-8189-39ad76711a61 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11D-A068-02 6690c90a-7dcb-41f1-a497-1552a75bd761 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11R-A00Z-07 de1cdf25-62e6-41c0-b1c8-257175519041 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11R-A00Z-07 de1cdf25-62e6-41c0-b1c8-257175519041 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011806_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11R-A00Z-07 de1cdf25-62e6-41c0-b1c8-257175519041 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011806_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11R-A00Z-07 de1cdf25-62e6-41c0-b1c8-257175519041 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011806_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11R-A00Z-07 de1cdf25-62e6-41c0-b1c8-257175519041 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593732.TCGA-A8-A06T-01A-11R-A00Z-07.110222_SN627_0062_A81FPKABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11R-A00Z-07 de1cdf25-62e6-41c0-b1c8-257175519041 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593775.TCGA-A8-A06T-01A-11R-A00Z-07.110222_SN627_0062_A81FPKABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11R-A00Z-07 de1cdf25-62e6-41c0-b1c8-257175519041 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593975.TCGA-A8-A06T-01A-11R-A00Z-07.110222_SN627_0062_A81FPKABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11R-A010-13 46ec9de2-d7c1-4ada-8553-0a3c43a75950 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11R-A010-13 46ec9de2-d7c1-4ada-8553-0a3c43a75950 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A06T-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11R-A010-13 46ec9de2-d7c1-4ada-8553-0a3c43a75950 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A06T-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11W-A019-09 11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11W-A019-09 11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 47 22-JUL-11 04.53.19.115000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11W-A019-09 11ec4a6f-f2dc-4b0b-9ba5-6fea8222e2d7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11W-A020-08 b13ede7f-06ad-452b-9e99-ceacdb54e878 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11X-A023-09 fc0442ea-cfed-472b-8f6c-20c6846918ce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-01A TCGA-A8-A06T-01A-11X-A024-08 907d9eb5-6d8a-469d-a3cf-040c44de577b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-10A TCGA-A8-A06T-10A-01D-A012-01 61514052-8270-49ed-a562-bfaeb6f2115c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-10A TCGA-A8-A06T-10A-01D-A012-01 61514052-8270-49ed-a562-bfaeb6f2115c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C01_628386.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-10A TCGA-A8-A06T-10A-01D-A012-01 61514052-8270-49ed-a562-bfaeb6f2115c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C01_628386.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-10A TCGA-A8-A06T-10A-01D-A012-01 61514052-8270-49ed-a562-bfaeb6f2115c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C01_628386.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-10A TCGA-A8-A06T-10A-01D-A012-01 61514052-8270-49ed-a562-bfaeb6f2115c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C01_628386.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-10A TCGA-A8-A06T-10A-01D-A012-01 61514052-8270-49ed-a562-bfaeb6f2115c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C01_628386.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-10A TCGA-A8-A06T-10A-01D-A012-01 61514052-8270-49ed-a562-bfaeb6f2115c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C01_628386.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-10A TCGA-A8-A06T-10A-01D-A012-01 61514052-8270-49ed-a562-bfaeb6f2115c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C01_628386.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-10A TCGA-A8-A06T-10A-01D-A012-01 61514052-8270-49ed-a562-bfaeb6f2115c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C01_628386.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-10A TCGA-A8-A06T-10A-01D-A017-09 5dafbec6-d692-4c28-b599-6ca1f46c8322 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-10A TCGA-A8-A06T-10A-01D-A018-08 e66d15db-9917-4528-8c19-a53efde9d94f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-10A TCGA-A8-A06T-10A-01D-A069-02 e48d458a-47f6-4ba8-80c7-6ff6b4e4b797 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-10A TCGA-A8-A06T-10A-01W-A021-09 b1e53432-5968-4fb9-acf4-f161e65013da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-10A TCGA-A8-A06T-10A-01W-A021-09 b1e53432-5968-4fb9-acf4-f161e65013da Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 47 22-JUL-11 04.53.19.115000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-10A TCGA-A8-A06T-10A-01W-A021-09 b1e53432-5968-4fb9-acf4-f161e65013da Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-10A TCGA-A8-A06T-10A-01W-A022-08 6c49a4a7-e9e6-4bfc-9c37-085ab9fc21f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-10A TCGA-A8-A06T-10A-01X-A025-09 ff1379f5-5766-4be6-b96c-835ffe4e825e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06T TCGA-A8-A06T-10A TCGA-A8-A06T-10A-01X-A026-08 c41cd61c-6fec-4f45-8c01-11a02e87a36d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11D-A00Y-05 2c40cc4e-ac16-4ef2-bd9c-cbf4792c89f1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11D-A00Y-05 2c40cc4e-ac16-4ef2-bd9c-cbf4792c89f1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A06U-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11D-A00Y-05 2c40cc4e-ac16-4ef2-bd9c-cbf4792c89f1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A06U-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11D-A00Y-05 2c40cc4e-ac16-4ef2-bd9c-cbf4792c89f1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A06U-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11D-A011-01 714b3b2b-ad91-483d-8754-2afc96067e5e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11D-A011-01 714b3b2b-ad91-483d-8754-2afc96067e5e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F03_628330.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11D-A011-01 714b3b2b-ad91-483d-8754-2afc96067e5e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F03_628330.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11D-A011-01 714b3b2b-ad91-483d-8754-2afc96067e5e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F03_628330.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11D-A011-01 714b3b2b-ad91-483d-8754-2afc96067e5e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F03_628330.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11D-A011-01 714b3b2b-ad91-483d-8754-2afc96067e5e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F03_628330.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11D-A011-01 714b3b2b-ad91-483d-8754-2afc96067e5e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F03_628330.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11D-A011-01 714b3b2b-ad91-483d-8754-2afc96067e5e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F03_628330.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11D-A011-01 714b3b2b-ad91-483d-8754-2afc96067e5e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F03_628330.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11D-A015-09 c02e7404-a606-4510-9b2c-822cbc7bdb19 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11D-A016-08 a37d80ab-e12e-40e6-a6fb-838e0ac71f3e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11D-A068-02 62d14015-5d27-4fcb-805e-5a4050096850 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11R-A00Z-07 89f9e509-5f4c-439b-b610-860f209332d2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11R-A00Z-07 89f9e509-5f4c-439b-b610-860f209332d2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011830_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11R-A00Z-07 89f9e509-5f4c-439b-b610-860f209332d2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011830_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11R-A00Z-07 89f9e509-5f4c-439b-b610-860f209332d2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011830_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11R-A010-13 56943989-3ea1-4467-9ca8-45db07e4a218 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11R-A010-13 56943989-3ea1-4467-9ca8-45db07e4a218 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A06U-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11R-A010-13 56943989-3ea1-4467-9ca8-45db07e4a218 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A06U-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11W-A019-09 277c2e8a-dd28-4b8f-96d3-ea790a1986b6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11W-A019-09 277c2e8a-dd28-4b8f-96d3-ea790a1986b6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 47 22-JUL-11 04.53.19.115000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11W-A019-09 277c2e8a-dd28-4b8f-96d3-ea790a1986b6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11W-A020-08 39d2da90-3ba0-4a08-88e3-87d13ded5b2c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11X-A023-09 5c719794-870e-46cc-a97d-a1730fa0b438 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-01A TCGA-A8-A06U-01A-11X-A024-08 6ab1d59e-1227-4958-9abb-cbd0d18253dd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-10A TCGA-A8-A06U-10A-01D-A012-01 59b4a8e8-9554-4abe-8f0d-db0d25e24f8f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-10A TCGA-A8-A06U-10A-01D-A012-01 59b4a8e8-9554-4abe-8f0d-db0d25e24f8f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E01_628368.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-10A TCGA-A8-A06U-10A-01D-A012-01 59b4a8e8-9554-4abe-8f0d-db0d25e24f8f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E01_628368.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-10A TCGA-A8-A06U-10A-01D-A012-01 59b4a8e8-9554-4abe-8f0d-db0d25e24f8f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E01_628368.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-10A TCGA-A8-A06U-10A-01D-A012-01 59b4a8e8-9554-4abe-8f0d-db0d25e24f8f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E01_628368.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-10A TCGA-A8-A06U-10A-01D-A012-01 59b4a8e8-9554-4abe-8f0d-db0d25e24f8f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E01_628368.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-10A TCGA-A8-A06U-10A-01D-A012-01 59b4a8e8-9554-4abe-8f0d-db0d25e24f8f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E01_628368.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-10A TCGA-A8-A06U-10A-01D-A012-01 59b4a8e8-9554-4abe-8f0d-db0d25e24f8f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E01_628368.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-10A TCGA-A8-A06U-10A-01D-A012-01 59b4a8e8-9554-4abe-8f0d-db0d25e24f8f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E01_628368.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-10A TCGA-A8-A06U-10A-01D-A017-09 2262a3e6-a20b-43a9-9f07-a4bcd8ca11d8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-10A TCGA-A8-A06U-10A-01D-A018-08 25f4cc5c-c42b-4310-b1f6-dc2bd7a21ac1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-10A TCGA-A8-A06U-10A-01D-A069-02 a4dabce0-44fd-489f-8928-49f2d251bd54 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-10A TCGA-A8-A06U-10A-01W-A021-09 115bb522-26a3-418d-90bb-e786e9c87b88 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-10A TCGA-A8-A06U-10A-01W-A021-09 115bb522-26a3-418d-90bb-e786e9c87b88 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 47 22-JUL-11 04.53.19.115000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-10A TCGA-A8-A06U-10A-01W-A021-09 115bb522-26a3-418d-90bb-e786e9c87b88 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-10A TCGA-A8-A06U-10A-01W-A022-08 00ca8c9f-2d42-4846-8145-72cffea10676 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-10A TCGA-A8-A06U-10A-01X-A025-09 94798d76-12a5-47a3-93a1-238e31d3e685 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06U TCGA-A8-A06U-10A TCGA-A8-A06U-10A-01X-A026-08 311e42a4-d4b5-49c6-8939-be5d06f7dca4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21D-A00Y-05 b89c70b2-1861-4f45-8529-dd3383c618d3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21D-A00Y-05 b89c70b2-1861-4f45-8529-dd3383c618d3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A06X-01A-21D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21D-A00Y-05 b89c70b2-1861-4f45-8529-dd3383c618d3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A06X-01A-21D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21D-A00Y-05 b89c70b2-1861-4f45-8529-dd3383c618d3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A06X-01A-21D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21D-A011-01 b8726c73-a8fe-4444-b034-a3100bd3d02b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21D-A011-01 b8726c73-a8fe-4444-b034-a3100bd3d02b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B04_628238.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21D-A011-01 b8726c73-a8fe-4444-b034-a3100bd3d02b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B04_628238.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21D-A011-01 b8726c73-a8fe-4444-b034-a3100bd3d02b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B04_628238.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21D-A011-01 b8726c73-a8fe-4444-b034-a3100bd3d02b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B04_628238.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21D-A011-01 b8726c73-a8fe-4444-b034-a3100bd3d02b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B04_628238.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21D-A011-01 b8726c73-a8fe-4444-b034-a3100bd3d02b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B04_628238.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21D-A011-01 b8726c73-a8fe-4444-b034-a3100bd3d02b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B04_628238.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21D-A011-01 b8726c73-a8fe-4444-b034-a3100bd3d02b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B04_628238.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21D-A015-09 204b2b9e-3eb2-4e2b-be6e-152d9c9862b3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21D-A016-08 19d75a74-dafd-4aed-a057-7cfda1edde47 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21R-A00Z-07 3ea9e7f1-39af-4089-b1c0-3c62db4e3102 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21R-A00Z-07 3ea9e7f1-39af-4089-b1c0-3c62db4e3102 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011848_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21R-A00Z-07 3ea9e7f1-39af-4089-b1c0-3c62db4e3102 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011848_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21R-A00Z-07 3ea9e7f1-39af-4089-b1c0-3c62db4e3102 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011848_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21R-A00Z-07 3ea9e7f1-39af-4089-b1c0-3c62db4e3102 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446387.TCGA-A8-A06X-01A-21R-A00Z-07.110225_UNC12-SN629_0063_AB041JABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21R-A00Z-07 3ea9e7f1-39af-4089-b1c0-3c62db4e3102 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446395.TCGA-A8-A06X-01A-21R-A00Z-07.110225_UNC12-SN629_0063_AB041JABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21R-A00Z-07 3ea9e7f1-39af-4089-b1c0-3c62db4e3102 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446418.TCGA-A8-A06X-01A-21R-A00Z-07.110225_UNC12-SN629_0063_AB041JABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21R-A010-13 0fb4b0f1-577f-4d5e-8550-eef3e959d025 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21W-A019-09 dc306402-3a55-4996-b786-f3f738f13dd3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21W-A019-09 dc306402-3a55-4996-b786-f3f738f13dd3 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21W-A020-08 54b2730b-bbf9-4484-8f2b-9aace199b23d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21X-A023-09 c4907c28-051c-4271-88d3-e3f4b86eb263 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06X TCGA-A8-A06X-01A TCGA-A8-A06X-01A-21X-A024-08 c1c15e1d-380d-41cf-85c1-6069484e47a8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06X TCGA-A8-A06X-10A TCGA-A8-A06X-10A-01D-A012-01 fd1269ef-da0e-45ff-8059-ce4601f91f7f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06X TCGA-A8-A06X-10A TCGA-A8-A06X-10A-01D-A012-01 fd1269ef-da0e-45ff-8059-ce4601f91f7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B09_628336.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A06X TCGA-A8-A06X-10A TCGA-A8-A06X-10A-01D-A012-01 fd1269ef-da0e-45ff-8059-ce4601f91f7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B09_628336.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06X TCGA-A8-A06X-10A TCGA-A8-A06X-10A-01D-A012-01 fd1269ef-da0e-45ff-8059-ce4601f91f7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B09_628336.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06X TCGA-A8-A06X-10A TCGA-A8-A06X-10A-01D-A012-01 fd1269ef-da0e-45ff-8059-ce4601f91f7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B09_628336.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06X TCGA-A8-A06X-10A TCGA-A8-A06X-10A-01D-A012-01 fd1269ef-da0e-45ff-8059-ce4601f91f7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B09_628336.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06X TCGA-A8-A06X-10A TCGA-A8-A06X-10A-01D-A012-01 fd1269ef-da0e-45ff-8059-ce4601f91f7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B09_628336.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06X TCGA-A8-A06X-10A TCGA-A8-A06X-10A-01D-A012-01 fd1269ef-da0e-45ff-8059-ce4601f91f7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B09_628336.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06X TCGA-A8-A06X-10A TCGA-A8-A06X-10A-01D-A012-01 fd1269ef-da0e-45ff-8059-ce4601f91f7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B09_628336.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A06X TCGA-A8-A06X-10A TCGA-A8-A06X-10A-01D-A017-09 73dcbe5c-db9c-424c-a62b-f125721da0cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06X TCGA-A8-A06X-10A TCGA-A8-A06X-10A-01D-A018-08 6bd4a874-833a-49a3-b782-8e296ff97455 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06X TCGA-A8-A06X-10A TCGA-A8-A06X-10A-01W-A021-09 09c30f57-516c-4a4f-bf63-943f09904d21 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06X TCGA-A8-A06X-10A TCGA-A8-A06X-10A-01W-A021-09 09c30f57-516c-4a4f-bf63-943f09904d21 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A06X TCGA-A8-A06X-10A TCGA-A8-A06X-10A-01W-A022-08 1b50b723-6b96-4098-aedb-fe9a3493b3ee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06X TCGA-A8-A06X-10A TCGA-A8-A06X-10A-01X-A025-09 6ea0b4e6-a971-4f66-ba32-ee0ac18b2a9c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06X TCGA-A8-A06X-10A TCGA-A8-A06X-10A-01X-A026-08 876c5ada-b147-427f-b16b-7df10895be8b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21D-A00Y-05 521462c3-d6c0-4277-9202-c97474c5818d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21D-A00Y-05 521462c3-d6c0-4277-9202-c97474c5818d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A06Y-01A-21D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21D-A00Y-05 521462c3-d6c0-4277-9202-c97474c5818d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A06Y-01A-21D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21D-A00Y-05 521462c3-d6c0-4277-9202-c97474c5818d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A06Y-01A-21D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21D-A011-01 2e6c87bb-1fb1-4c26-9081-8848b022d900 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21D-A011-01 2e6c87bb-1fb1-4c26-9081-8848b022d900 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G01_628268.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21D-A011-01 2e6c87bb-1fb1-4c26-9081-8848b022d900 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G01_628268.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21D-A011-01 2e6c87bb-1fb1-4c26-9081-8848b022d900 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G01_628268.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21D-A011-01 2e6c87bb-1fb1-4c26-9081-8848b022d900 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G01_628268.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21D-A011-01 2e6c87bb-1fb1-4c26-9081-8848b022d900 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G01_628268.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21D-A011-01 2e6c87bb-1fb1-4c26-9081-8848b022d900 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G01_628268.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21D-A011-01 2e6c87bb-1fb1-4c26-9081-8848b022d900 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G01_628268.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21D-A011-01 2e6c87bb-1fb1-4c26-9081-8848b022d900 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G01_628268.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21D-A015-09 0b06eb75-0c8a-46df-9d06-98530d3cff6a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21D-A016-08 b9bdbbc7-c8d9-450d-8d17-bdfb72e166b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21D-A068-02 f8a1a885-fef5-4cec-9fcd-320965ecb399 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21R-A00Z-07 14f20743-35f3-4e68-a2e5-e03edfe31a97 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21R-A00Z-07 14f20743-35f3-4e68-a2e5-e03edfe31a97 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011860_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21R-A00Z-07 14f20743-35f3-4e68-a2e5-e03edfe31a97 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011860_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21R-A00Z-07 14f20743-35f3-4e68-a2e5-e03edfe31a97 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011860_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21R-A00Z-07 14f20743-35f3-4e68-a2e5-e03edfe31a97 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_653935.TCGA-A8-A06Y-01A-21R-A00Z-07.110304_UNC12-SN629_0065_AB05PGABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21R-A00Z-07 14f20743-35f3-4e68-a2e5-e03edfe31a97 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_654086.TCGA-A8-A06Y-01A-21R-A00Z-07.110304_UNC12-SN629_0065_AB05PGABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21R-A00Z-07 14f20743-35f3-4e68-a2e5-e03edfe31a97 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_654208.TCGA-A8-A06Y-01A-21R-A00Z-07.110304_UNC12-SN629_0065_AB05PGABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21R-A010-13 871050d4-54cc-42cf-b4d5-9238b878e2a3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21R-A010-13 871050d4-54cc-42cf-b4d5-9238b878e2a3 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A06Y-01A-21R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21R-A010-13 871050d4-54cc-42cf-b4d5-9238b878e2a3 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A06Y-01A-21R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21W-A019-09 3bede568-d8b6-44c0-99e0-a9b6c7d4ce80 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21W-A019-09 3bede568-d8b6-44c0-99e0-a9b6c7d4ce80 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21W-A020-08 1aef8a27-d987-4149-8654-7e5bccc25a91 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21X-A023-09 ae1bbd15-0a12-4673-8dd5-25e474d431a7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-01A TCGA-A8-A06Y-01A-21X-A024-08 fc24423e-cfaf-4ac3-a455-9eb51622ccb9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-10A TCGA-A8-A06Y-10A-01D-A012-01 ffd0c58d-cd42-40c3-8ad2-cab40cc43819 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-10A TCGA-A8-A06Y-10A-01D-A012-01 ffd0c58d-cd42-40c3-8ad2-cab40cc43819 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D07_628308.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A06Y TCGA-A8-A06Y-10A TCGA-A8-A06Y-10A-01D-A012-01 ffd0c58d-cd42-40c3-8ad2-cab40cc43819 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D07_628308.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-10A TCGA-A8-A06Y-10A-01D-A012-01 ffd0c58d-cd42-40c3-8ad2-cab40cc43819 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D07_628308.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-10A TCGA-A8-A06Y-10A-01D-A012-01 ffd0c58d-cd42-40c3-8ad2-cab40cc43819 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D07_628308.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-10A TCGA-A8-A06Y-10A-01D-A012-01 ffd0c58d-cd42-40c3-8ad2-cab40cc43819 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D07_628308.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-10A TCGA-A8-A06Y-10A-01D-A012-01 ffd0c58d-cd42-40c3-8ad2-cab40cc43819 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D07_628308.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-10A TCGA-A8-A06Y-10A-01D-A012-01 ffd0c58d-cd42-40c3-8ad2-cab40cc43819 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D07_628308.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-10A TCGA-A8-A06Y-10A-01D-A012-01 ffd0c58d-cd42-40c3-8ad2-cab40cc43819 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D07_628308.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-10A TCGA-A8-A06Y-10A-01D-A017-09 792be37f-6ecf-45e8-abee-aecf5eabe7ad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-10A TCGA-A8-A06Y-10A-01D-A018-08 ce132466-698a-4670-ba4f-cced38e0673e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-10A TCGA-A8-A06Y-10A-01D-A069-02 17db8795-4ded-48fd-b3c5-47af34d3eb6e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-10A TCGA-A8-A06Y-10A-01W-A021-09 268a4247-2839-412a-a531-475663b3a6ac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-10A TCGA-A8-A06Y-10A-01W-A021-09 268a4247-2839-412a-a531-475663b3a6ac Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-10A TCGA-A8-A06Y-10A-01W-A022-08 3b03cc0c-428e-424e-a547-952477a9a3ce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-10A TCGA-A8-A06Y-10A-01X-A025-09 8e9b5dea-1a79-4318-a987-e7354473426a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Y TCGA-A8-A06Y-10A TCGA-A8-A06Y-10A-01X-A026-08 30da9489-af7b-402e-9f79-038955aae3f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11D-A00Y-05 438172fd-8afc-4830-ba42-a5dec6a97aca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11D-A00Y-05 438172fd-8afc-4830-ba42-a5dec6a97aca DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A06Z-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11D-A00Y-05 438172fd-8afc-4830-ba42-a5dec6a97aca DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A06Z-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11D-A00Y-05 438172fd-8afc-4830-ba42-a5dec6a97aca DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A06Z-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11D-A011-01 0cea4cc3-5997-4ab3-8528-2e13e1e0fade Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11D-A011-01 0cea4cc3-5997-4ab3-8528-2e13e1e0fade SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C12_628294.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11D-A011-01 0cea4cc3-5997-4ab3-8528-2e13e1e0fade SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C12_628294.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11D-A011-01 0cea4cc3-5997-4ab3-8528-2e13e1e0fade SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C12_628294.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11D-A011-01 0cea4cc3-5997-4ab3-8528-2e13e1e0fade SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C12_628294.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11D-A011-01 0cea4cc3-5997-4ab3-8528-2e13e1e0fade SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C12_628294.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11D-A011-01 0cea4cc3-5997-4ab3-8528-2e13e1e0fade SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C12_628294.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11D-A011-01 0cea4cc3-5997-4ab3-8528-2e13e1e0fade SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C12_628294.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11D-A011-01 0cea4cc3-5997-4ab3-8528-2e13e1e0fade SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C12_628294.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11D-A015-09 df290988-51ac-43c0-8218-7651a5021cea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11D-A016-08 ed025222-be90-4629-bfc7-c54d4094a3e9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11D-A068-02 4b3bd717-9dbb-4401-ac42-5d0529347162 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11R-A00Z-07 42b99ee7-a1ae-4383-b343-adf468cb8b51 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11R-A00Z-07 42b99ee7-a1ae-4383-b343-adf468cb8b51 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011874_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11R-A00Z-07 42b99ee7-a1ae-4383-b343-adf468cb8b51 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011874_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11R-A00Z-07 42b99ee7-a1ae-4383-b343-adf468cb8b51 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011874_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11R-A00Z-07 42b99ee7-a1ae-4383-b343-adf468cb8b51 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_602091.TCGA-A8-A06Z-01A-11R-A00Z-07.111011_UNC12-SN629_0149_AB062VABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11R-A00Z-07 42b99ee7-a1ae-4383-b343-adf468cb8b51 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_602236.TCGA-A8-A06Z-01A-11R-A00Z-07.111011_UNC12-SN629_0149_AB062VABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11R-A00Z-07 42b99ee7-a1ae-4383-b343-adf468cb8b51 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_602360.TCGA-A8-A06Z-01A-11R-A00Z-07.111011_UNC12-SN629_0149_AB062VABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11R-A010-13 f840e259-13c9-43a7-86ff-fe5bc75fe986 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11R-A010-13 f840e259-13c9-43a7-86ff-fe5bc75fe986 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A06Z-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11R-A010-13 f840e259-13c9-43a7-86ff-fe5bc75fe986 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A06Z-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11W-A019-09 f540c4f8-75b3-47d7-a7cf-53cbf7a2c814 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11W-A019-09 f540c4f8-75b3-47d7-a7cf-53cbf7a2c814 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11W-A020-08 7c79f95e-7cfc-4f7a-a1a7-26aa66ab46a4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11X-A023-09 67a010bb-419c-484f-b342-893c0c1178cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-01A TCGA-A8-A06Z-01A-11X-A024-08 55b4ce33-c18c-4fa6-919b-02f43504ec2e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-10A TCGA-A8-A06Z-10A-01D-A012-01 6f315f59-03b0-4ac5-80ae-4e4968372c31 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-10A TCGA-A8-A06Z-10A-01D-A012-01 6f315f59-03b0-4ac5-80ae-4e4968372c31 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G04_628392.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A06Z TCGA-A8-A06Z-10A TCGA-A8-A06Z-10A-01D-A012-01 6f315f59-03b0-4ac5-80ae-4e4968372c31 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G04_628392.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-10A TCGA-A8-A06Z-10A-01D-A012-01 6f315f59-03b0-4ac5-80ae-4e4968372c31 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G04_628392.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-10A TCGA-A8-A06Z-10A-01D-A012-01 6f315f59-03b0-4ac5-80ae-4e4968372c31 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G04_628392.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-10A TCGA-A8-A06Z-10A-01D-A012-01 6f315f59-03b0-4ac5-80ae-4e4968372c31 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G04_628392.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-10A TCGA-A8-A06Z-10A-01D-A012-01 6f315f59-03b0-4ac5-80ae-4e4968372c31 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G04_628392.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-10A TCGA-A8-A06Z-10A-01D-A012-01 6f315f59-03b0-4ac5-80ae-4e4968372c31 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G04_628392.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-10A TCGA-A8-A06Z-10A-01D-A012-01 6f315f59-03b0-4ac5-80ae-4e4968372c31 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G04_628392.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-10A TCGA-A8-A06Z-10A-01D-A017-09 65272e20-0c4c-4467-b333-292bef617e0e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-10A TCGA-A8-A06Z-10A-01D-A018-08 37db9a86-6a17-49c8-a550-1a2200f2ca7b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-10A TCGA-A8-A06Z-10A-01D-A069-02 96d5412b-d142-4779-a2e2-51c09d96652e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-10A TCGA-A8-A06Z-10A-01W-A021-09 d8d09274-b620-4783-96d1-7b1ba32f89e6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-10A TCGA-A8-A06Z-10A-01W-A021-09 d8d09274-b620-4783-96d1-7b1ba32f89e6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-10A TCGA-A8-A06Z-10A-01W-A022-08 1de2f32c-04c2-4163-bf0f-03fb70d194c6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-10A TCGA-A8-A06Z-10A-01X-A025-09 b3fa13a3-dd90-466a-9276-02e0baf0f473 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A06Z TCGA-A8-A06Z-10A TCGA-A8-A06Z-10A-01X-A026-08 a1986dc5-f442-427e-a72c-480279366a21 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A06Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11D-A086-02 a80c8890-41e6-4233-bc2b-3e53558ef9dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A8-A075.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11D-A087-01 a213bd41-34bd-4bf5-b8af-096156c79b8d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A8-A075.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11D-A087-01 a213bd41-34bd-4bf5-b8af-096156c79b8d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A01_698156.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11D-A087-01 a213bd41-34bd-4bf5-b8af-096156c79b8d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A01_698156.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11D-A087-01 a213bd41-34bd-4bf5-b8af-096156c79b8d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A01_698156.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11D-A087-01 a213bd41-34bd-4bf5-b8af-096156c79b8d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A01_698156.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11D-A087-01 a213bd41-34bd-4bf5-b8af-096156c79b8d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A01_698156.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11D-A087-01 a213bd41-34bd-4bf5-b8af-096156c79b8d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A01_698156.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11D-A087-01 a213bd41-34bd-4bf5-b8af-096156c79b8d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A01_698156.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11D-A087-01 a213bd41-34bd-4bf5-b8af-096156c79b8d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A01_698156.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11D-A088-05 31912fcb-7c27-4b29-8a21-3261ad37d957 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A8-A075.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11D-A099-09 085dd125-1f95-46aa-a480-2965090e8591 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A8-A075.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11D-A099-09 085dd125-1f95-46aa-a480-2965090e8591 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11D-A099-09 085dd125-1f95-46aa-a480-2965090e8591 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11D-A10P-05 0e5e8053-4055-4d37-9c8b-5b58cb31a8dd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A8-A075.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11D-A10P-05 0e5e8053-4055-4d37-9c8b-5b58cb31a8dd DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791004_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11D-A10P-05 0e5e8053-4055-4d37-9c8b-5b58cb31a8dd DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791004_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11D-A10P-05 0e5e8053-4055-4d37-9c8b-5b58cb31a8dd DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-A8-A075-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11D-A10P-05 0e5e8053-4055-4d37-9c8b-5b58cb31a8dd DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-A8-A075-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11D-A19H-09 6c8e9197-fd16-4fed-bfda-e349cab26314 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A8-A075.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11R-A084-07 1ccf908a-7620-4af8-b83f-0e287f3655c5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A8-A075.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11R-A084-07 1ccf908a-7620-4af8-b83f-0e287f3655c5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012583_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11R-A084-07 1ccf908a-7620-4af8-b83f-0e287f3655c5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012583_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11R-A084-07 1ccf908a-7620-4af8-b83f-0e287f3655c5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012583_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11R-A084-07 1ccf908a-7620-4af8-b83f-0e287f3655c5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477551.TCGA-A8-A075-01A-11R-A084-07.110325_UNC13-SN749_0047_AB02CWABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11R-A084-07 1ccf908a-7620-4af8-b83f-0e287f3655c5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477552.TCGA-A8-A075-01A-11R-A084-07.110325_UNC13-SN749_0047_AB02CWABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11R-A084-07 1ccf908a-7620-4af8-b83f-0e287f3655c5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477895.TCGA-A8-A075-01A-11R-A084-07.110325_UNC13-SN749_0047_AB02CWABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11R-A085-13 cb123182-5e19-4cbc-a8f1-c00a8c6825fc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A8-A075.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11R-A085-13 cb123182-5e19-4cbc-a8f1-c00a8c6825fc miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A075-01A-11R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11R-A085-13 cb123182-5e19-4cbc-a8f1-c00a8c6825fc miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A075-01A-11R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11W-A097-09 396cdd13-5d12-4576-83c9-518b281688c7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A8-A075.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A8-A075 TCGA-A8-A075-01A TCGA-A8-A075-01A-11X-A098-09 e40e2d23-d112-45b5-9676-740eb12c80b3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A8-A075.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A8-A075 TCGA-A8-A075-10B TCGA-A8-A075-10B-01D-A086-02 049a902c-f135-4b26-b695-5567e6974ab4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A8-A075.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A8-A075 TCGA-A8-A075-10B TCGA-A8-A075-10B-01D-A087-01 1b925549-4cb5-4c72-bc31-a64f82ae1a9f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A8-A075.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A8-A075 TCGA-A8-A075-10B TCGA-A8-A075-10B-01D-A087-01 1b925549-4cb5-4c72-bc31-a64f82ae1a9f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E12_697988.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-A8-A075 TCGA-A8-A075-10B TCGA-A8-A075-10B-01D-A087-01 1b925549-4cb5-4c72-bc31-a64f82ae1a9f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E12_697988.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A8-A075 TCGA-A8-A075-10B TCGA-A8-A075-10B-01D-A087-01 1b925549-4cb5-4c72-bc31-a64f82ae1a9f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E12_697988.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A8-A075 TCGA-A8-A075-10B TCGA-A8-A075-10B-01D-A087-01 1b925549-4cb5-4c72-bc31-a64f82ae1a9f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E12_697988.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A8-A075 TCGA-A8-A075-10B TCGA-A8-A075-10B-01D-A087-01 1b925549-4cb5-4c72-bc31-a64f82ae1a9f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E12_697988.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A8-A075 TCGA-A8-A075-10B TCGA-A8-A075-10B-01D-A087-01 1b925549-4cb5-4c72-bc31-a64f82ae1a9f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E12_697988.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A8-A075 TCGA-A8-A075-10B TCGA-A8-A075-10B-01D-A087-01 1b925549-4cb5-4c72-bc31-a64f82ae1a9f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E12_697988.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-A8-A075 TCGA-A8-A075-10B TCGA-A8-A075-10B-01D-A087-01 1b925549-4cb5-4c72-bc31-a64f82ae1a9f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E12_697988.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-A8-A075 TCGA-A8-A075-10B TCGA-A8-A075-10B-01D-A099-09 d67faef9-d467-4476-bbe9-181225c15e7b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A8-A075.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A8-A075 TCGA-A8-A075-10B TCGA-A8-A075-10B-01D-A099-09 d67faef9-d467-4476-bbe9-181225c15e7b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-A8-A075 TCGA-A8-A075-10B TCGA-A8-A075-10B-01D-A099-09 d67faef9-d467-4476-bbe9-181225c15e7b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A075 TCGA-A8-A075-10B TCGA-A8-A075-10B-01D-A19H-09 6d1294b5-4fbb-4f31-8d45-e8540be8452d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A8-A075.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A8-A075 TCGA-A8-A075-10B TCGA-A8-A075-10B-01W-A097-09 465fd267-8e86-41c9-9a04-72f0541b6fd4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A8-A075.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A8-A075 TCGA-A8-A075-10B TCGA-A8-A075-10B-01X-A098-09 c9a401b5-a2e6-4828-8bba-ee55ebb17bda Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-A8-A075.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21D-A00Y-05 3b014e7c-8d0e-4d36-a2a7-5f32eb869526 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A076.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21D-A00Y-05 3b014e7c-8d0e-4d36-a2a7-5f32eb869526 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A076-01A-21D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21D-A00Y-05 3b014e7c-8d0e-4d36-a2a7-5f32eb869526 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A076-01A-21D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21D-A00Y-05 3b014e7c-8d0e-4d36-a2a7-5f32eb869526 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A076-01A-21D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21D-A011-01 4f7e5b63-0735-4b62-82c8-0def83906d4c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A076.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21D-A011-01 4f7e5b63-0735-4b62-82c8-0def83906d4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D03_628218.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21D-A011-01 4f7e5b63-0735-4b62-82c8-0def83906d4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D03_628218.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21D-A011-01 4f7e5b63-0735-4b62-82c8-0def83906d4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D03_628218.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21D-A011-01 4f7e5b63-0735-4b62-82c8-0def83906d4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D03_628218.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21D-A011-01 4f7e5b63-0735-4b62-82c8-0def83906d4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D03_628218.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21D-A011-01 4f7e5b63-0735-4b62-82c8-0def83906d4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D03_628218.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21D-A011-01 4f7e5b63-0735-4b62-82c8-0def83906d4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D03_628218.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21D-A011-01 4f7e5b63-0735-4b62-82c8-0def83906d4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D03_628218.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21D-A015-09 d1f7450b-91f9-461e-95cd-47f54f0c431d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A076.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21D-A016-08 99c43ff5-4c0a-4d57-892e-1558b3c60977 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A076.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21D-A068-02 1a36926d-2427-4356-9847-11efeac7d962 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A076.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21R-A00Z-07 95b5d7ca-4078-4af9-ac6b-4ed1c3cd9c60 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A076.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21R-A00Z-07 95b5d7ca-4078-4af9-ac6b-4ed1c3cd9c60 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011886_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21R-A00Z-07 95b5d7ca-4078-4af9-ac6b-4ed1c3cd9c60 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011886_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21R-A00Z-07 95b5d7ca-4078-4af9-ac6b-4ed1c3cd9c60 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011886_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21R-A00Z-07 95b5d7ca-4078-4af9-ac6b-4ed1c3cd9c60 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593345.TCGA-A8-A076-01A-21R-A00Z-07.110228_UNC10-SN254_0198_BB041RABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21R-A00Z-07 95b5d7ca-4078-4af9-ac6b-4ed1c3cd9c60 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593347.TCGA-A8-A076-01A-21R-A00Z-07.110228_UNC10-SN254_0198_BB041RABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21R-A00Z-07 95b5d7ca-4078-4af9-ac6b-4ed1c3cd9c60 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593354.TCGA-A8-A076-01A-21R-A00Z-07.110228_UNC10-SN254_0198_BB041RABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21R-A010-13 c2aa511a-f3db-4cff-abb6-4362b7cc3535 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A076.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21R-A010-13 c2aa511a-f3db-4cff-abb6-4362b7cc3535 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A076-01A-21R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21R-A010-13 c2aa511a-f3db-4cff-abb6-4362b7cc3535 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A076-01A-21R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21W-A019-09 dfa06058-320b-4cc6-ac18-a42e59019b1c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A076.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21W-A019-09 dfa06058-320b-4cc6-ac18-a42e59019b1c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21W-A020-08 b9af398d-c764-4760-b43d-d9e00886423a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A076.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21X-A023-09 91abb1b3-778f-452f-8144-33e10aa6432b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A076.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A076 TCGA-A8-A076-01A TCGA-A8-A076-01A-21X-A024-08 104a07d6-8770-4380-953c-c53b81236b5f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A076.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A076 TCGA-A8-A076-10A TCGA-A8-A076-10A-01D-A012-01 14624bc4-0f63-417e-a4b5-ca52a4da3f3a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A076.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A076 TCGA-A8-A076-10A TCGA-A8-A076-10A-01D-A012-01 14624bc4-0f63-417e-a4b5-ca52a4da3f3a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F02_628360.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A076 TCGA-A8-A076-10A TCGA-A8-A076-10A-01D-A012-01 14624bc4-0f63-417e-a4b5-ca52a4da3f3a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F02_628360.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A076 TCGA-A8-A076-10A TCGA-A8-A076-10A-01D-A012-01 14624bc4-0f63-417e-a4b5-ca52a4da3f3a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F02_628360.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A076 TCGA-A8-A076-10A TCGA-A8-A076-10A-01D-A012-01 14624bc4-0f63-417e-a4b5-ca52a4da3f3a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F02_628360.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A076 TCGA-A8-A076-10A TCGA-A8-A076-10A-01D-A012-01 14624bc4-0f63-417e-a4b5-ca52a4da3f3a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F02_628360.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A076 TCGA-A8-A076-10A TCGA-A8-A076-10A-01D-A012-01 14624bc4-0f63-417e-a4b5-ca52a4da3f3a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F02_628360.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A076 TCGA-A8-A076-10A TCGA-A8-A076-10A-01D-A012-01 14624bc4-0f63-417e-a4b5-ca52a4da3f3a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F02_628360.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A076 TCGA-A8-A076-10A TCGA-A8-A076-10A-01D-A012-01 14624bc4-0f63-417e-a4b5-ca52a4da3f3a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F02_628360.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A076 TCGA-A8-A076-10A TCGA-A8-A076-10A-01D-A017-09 d3085a7c-8ff9-41f8-a920-1b25957fc898 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A076.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A076 TCGA-A8-A076-10A TCGA-A8-A076-10A-01D-A018-08 7af40981-6206-4508-b728-64dddaea6880 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A076.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A076 TCGA-A8-A076-10A TCGA-A8-A076-10A-01D-A069-02 40e6e662-a416-452d-a1ef-a9aeaf75c5df Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A076.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A076 TCGA-A8-A076-10A TCGA-A8-A076-10A-01W-A021-09 20b982d3-ac52-4a42-8b01-05bc860a6b2b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A076.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A076 TCGA-A8-A076-10A TCGA-A8-A076-10A-01W-A021-09 20b982d3-ac52-4a42-8b01-05bc860a6b2b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A076 TCGA-A8-A076-10A TCGA-A8-A076-10A-01W-A022-08 58fdd89a-d461-4efd-9383-bb39529c4878 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A076.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A076 TCGA-A8-A076-10A TCGA-A8-A076-10A-01X-A025-09 11cf4249-f914-4561-8eca-5f3c56202eff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A076.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A076 TCGA-A8-A076-10A TCGA-A8-A076-10A-01X-A026-08 ea44a59e-5744-4435-8280-cea7251d2942 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A076.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21D-A00Y-05 9b99e22c-1dc1-418a-9b3c-05a483ee1b3b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A079.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21D-A00Y-05 9b99e22c-1dc1-418a-9b3c-05a483ee1b3b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A079-01A-21D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21D-A00Y-05 9b99e22c-1dc1-418a-9b3c-05a483ee1b3b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A079-01A-21D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21D-A00Y-05 9b99e22c-1dc1-418a-9b3c-05a483ee1b3b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A079-01A-21D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21D-A011-01 105f3c7d-547d-45d9-b722-5c9fa04ee8d0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A079.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21D-A011-01 105f3c7d-547d-45d9-b722-5c9fa04ee8d0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F07_628280.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21D-A011-01 105f3c7d-547d-45d9-b722-5c9fa04ee8d0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F07_628280.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21D-A011-01 105f3c7d-547d-45d9-b722-5c9fa04ee8d0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F07_628280.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21D-A011-01 105f3c7d-547d-45d9-b722-5c9fa04ee8d0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F07_628280.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21D-A011-01 105f3c7d-547d-45d9-b722-5c9fa04ee8d0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F07_628280.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21D-A011-01 105f3c7d-547d-45d9-b722-5c9fa04ee8d0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F07_628280.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21D-A011-01 105f3c7d-547d-45d9-b722-5c9fa04ee8d0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F07_628280.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21D-A011-01 105f3c7d-547d-45d9-b722-5c9fa04ee8d0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F07_628280.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21D-A015-09 a2d939b3-0a6b-437e-a0ed-71918f1fba47 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A079.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21D-A016-08 55b5aaa5-9d91-4fcc-a74b-55bb6828a4c3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A079.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21D-A068-02 d940b253-7c26-4169-b156-b3f2dab2ddd1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A079.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21R-A00Z-07 6fcf4a82-7687-4a9b-bae9-9dabff66aca8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A079.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21R-A00Z-07 6fcf4a82-7687-4a9b-bae9-9dabff66aca8 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012016_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21R-A00Z-07 6fcf4a82-7687-4a9b-bae9-9dabff66aca8 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012016_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21R-A00Z-07 6fcf4a82-7687-4a9b-bae9-9dabff66aca8 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012016_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21R-A00Z-07 6fcf4a82-7687-4a9b-bae9-9dabff66aca8 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_660397.TCGA-A8-A079-01A-21R-A00Z-07.110308_UNC9-SN296_0158_BB042UABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21R-A00Z-07 6fcf4a82-7687-4a9b-bae9-9dabff66aca8 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_660409.TCGA-A8-A079-01A-21R-A00Z-07.110308_UNC9-SN296_0158_BB042UABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21R-A00Z-07 6fcf4a82-7687-4a9b-bae9-9dabff66aca8 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_660422.TCGA-A8-A079-01A-21R-A00Z-07.110308_UNC9-SN296_0158_BB042UABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21R-A010-13 15950aa6-ba8e-4b71-9642-3fdeb7e7ef90 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A079.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21R-A010-13 15950aa6-ba8e-4b71-9642-3fdeb7e7ef90 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A079-01A-21R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21R-A010-13 15950aa6-ba8e-4b71-9642-3fdeb7e7ef90 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A079-01A-21R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21W-A019-09 06221ce8-ab65-4694-945b-059b9c15ede4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A079.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21W-A019-09 06221ce8-ab65-4694-945b-059b9c15ede4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21W-A020-08 46391788-9656-42cb-bf83-5fd3c55da344 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A079.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21X-A023-09 325dd32c-8458-46d1-9171-816059597407 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A079.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A079 TCGA-A8-A079-01A TCGA-A8-A079-01A-21X-A024-08 0feecfc3-4780-4066-bad4-2f548938418f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A079.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A079 TCGA-A8-A079-10A TCGA-A8-A079-10A-01D-A012-01 4c0c662a-81b2-4522-a7ed-fee1987c8859 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A079.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A079 TCGA-A8-A079-10A TCGA-A8-A079-10A-01D-A012-01 4c0c662a-81b2-4522-a7ed-fee1987c8859 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E11_628244.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A079 TCGA-A8-A079-10A TCGA-A8-A079-10A-01D-A012-01 4c0c662a-81b2-4522-a7ed-fee1987c8859 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E11_628244.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A079 TCGA-A8-A079-10A TCGA-A8-A079-10A-01D-A012-01 4c0c662a-81b2-4522-a7ed-fee1987c8859 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E11_628244.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A079 TCGA-A8-A079-10A TCGA-A8-A079-10A-01D-A012-01 4c0c662a-81b2-4522-a7ed-fee1987c8859 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E11_628244.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A079 TCGA-A8-A079-10A TCGA-A8-A079-10A-01D-A012-01 4c0c662a-81b2-4522-a7ed-fee1987c8859 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E11_628244.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A079 TCGA-A8-A079-10A TCGA-A8-A079-10A-01D-A012-01 4c0c662a-81b2-4522-a7ed-fee1987c8859 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E11_628244.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A079 TCGA-A8-A079-10A TCGA-A8-A079-10A-01D-A012-01 4c0c662a-81b2-4522-a7ed-fee1987c8859 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E11_628244.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A079 TCGA-A8-A079-10A TCGA-A8-A079-10A-01D-A012-01 4c0c662a-81b2-4522-a7ed-fee1987c8859 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E11_628244.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A079 TCGA-A8-A079-10A TCGA-A8-A079-10A-01D-A017-09 754ff141-cf8c-4b0f-8c90-3754d14b905c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A079.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A079 TCGA-A8-A079-10A TCGA-A8-A079-10A-01D-A018-08 98a3194b-82b9-4f5c-984d-c4603e3b6786 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A079.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A079 TCGA-A8-A079-10A TCGA-A8-A079-10A-01D-A069-02 3a87d682-98a3-41b6-a34f-08f057ec2769 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A079.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A079 TCGA-A8-A079-10A TCGA-A8-A079-10A-01W-A021-09 216ff15e-f1a4-402a-a5bb-a9b4dccd6ada Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A079.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A079 TCGA-A8-A079-10A TCGA-A8-A079-10A-01W-A021-09 216ff15e-f1a4-402a-a5bb-a9b4dccd6ada Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A079 TCGA-A8-A079-10A TCGA-A8-A079-10A-01W-A022-08 b0c43d33-9bf2-451a-a4e7-2e04fadcf71d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A079.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A079 TCGA-A8-A079-10A TCGA-A8-A079-10A-01X-A025-09 f163eba5-558f-4087-a873-60efcce6e3c3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A079.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A079 TCGA-A8-A079-10A TCGA-A8-A079-10A-01X-A026-08 f3ad8e03-5f5a-4966-9469-0e1175460119 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A079.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11D-A00Y-05 6afd1dd9-a6b7-4f00-ace4-1e5d40264c65 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11D-A00Y-05 6afd1dd9-a6b7-4f00-ace4-1e5d40264c65 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A07B-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11D-A00Y-05 6afd1dd9-a6b7-4f00-ace4-1e5d40264c65 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A07B-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11D-A00Y-05 6afd1dd9-a6b7-4f00-ace4-1e5d40264c65 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A07B-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11D-A011-01 46ca210a-0284-4e84-9a0b-4648b337ed02 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11D-A011-01 46ca210a-0284-4e84-9a0b-4648b337ed02 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A03_628284.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11D-A011-01 46ca210a-0284-4e84-9a0b-4648b337ed02 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A03_628284.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11D-A011-01 46ca210a-0284-4e84-9a0b-4648b337ed02 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A03_628284.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11D-A011-01 46ca210a-0284-4e84-9a0b-4648b337ed02 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A03_628284.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11D-A011-01 46ca210a-0284-4e84-9a0b-4648b337ed02 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A03_628284.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11D-A011-01 46ca210a-0284-4e84-9a0b-4648b337ed02 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A03_628284.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11D-A011-01 46ca210a-0284-4e84-9a0b-4648b337ed02 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A03_628284.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11D-A011-01 46ca210a-0284-4e84-9a0b-4648b337ed02 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A03_628284.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11D-A015-09 91211698-58db-414b-9cc8-794b326ce33c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11D-A016-08 1bebe1e5-6ccb-408a-9a84-130e2ccb7444 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11D-A068-02 86738947-ac15-4c47-99e4-b77a68e7fa59 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11D-A19H-09 5b7d5767-2037-4175-aec9-886776343181 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11R-A00Z-07 0c9fe532-3920-4a59-b348-65b184c0eff4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11R-A00Z-07 0c9fe532-3920-4a59-b348-65b184c0eff4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011816_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11R-A00Z-07 0c9fe532-3920-4a59-b348-65b184c0eff4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011816_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11R-A00Z-07 0c9fe532-3920-4a59-b348-65b184c0eff4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011816_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11R-A00Z-07 0c9fe532-3920-4a59-b348-65b184c0eff4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_533719.TCGA-A8-A07B-01A-11R-A00Z-07.110209_SN627_0058_B81DH0ABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11R-A00Z-07 0c9fe532-3920-4a59-b348-65b184c0eff4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_533725.TCGA-A8-A07B-01A-11R-A00Z-07.110209_SN627_0058_B81DH0ABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11R-A00Z-07 0c9fe532-3920-4a59-b348-65b184c0eff4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_533729.TCGA-A8-A07B-01A-11R-A00Z-07.110209_SN627_0058_B81DH0ABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11R-A010-13 32313e69-1c6f-41f5-93bd-147ed8d7feb8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11R-A010-13 32313e69-1c6f-41f5-93bd-147ed8d7feb8 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07B-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11R-A010-13 32313e69-1c6f-41f5-93bd-147ed8d7feb8 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07B-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11W-A019-09 734421b9-ed55-45b0-9ad5-51bc754ebe90 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11W-A019-09 734421b9-ed55-45b0-9ad5-51bc754ebe90 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11W-A020-08 b58e92a5-b402-4547-8d33-59d96507441b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11X-A023-09 168bbea8-86e8-4d20-a72f-2dd77b156ce3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07B TCGA-A8-A07B-01A TCGA-A8-A07B-01A-11X-A024-08 c2dc7e66-2e6e-4f4c-a3d6-cd9f364ce5e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07B TCGA-A8-A07B-10A TCGA-A8-A07B-10A-01D-A012-01 f0ba3ce7-96a9-4b54-9adb-f51e4c40b8ce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07B TCGA-A8-A07B-10A TCGA-A8-A07B-10A-01D-A012-01 f0ba3ce7-96a9-4b54-9adb-f51e4c40b8ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C05_628400.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A07B TCGA-A8-A07B-10A TCGA-A8-A07B-10A-01D-A012-01 f0ba3ce7-96a9-4b54-9adb-f51e4c40b8ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C05_628400.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07B TCGA-A8-A07B-10A TCGA-A8-A07B-10A-01D-A012-01 f0ba3ce7-96a9-4b54-9adb-f51e4c40b8ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C05_628400.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07B TCGA-A8-A07B-10A TCGA-A8-A07B-10A-01D-A012-01 f0ba3ce7-96a9-4b54-9adb-f51e4c40b8ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C05_628400.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07B TCGA-A8-A07B-10A TCGA-A8-A07B-10A-01D-A012-01 f0ba3ce7-96a9-4b54-9adb-f51e4c40b8ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C05_628400.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07B TCGA-A8-A07B-10A TCGA-A8-A07B-10A-01D-A012-01 f0ba3ce7-96a9-4b54-9adb-f51e4c40b8ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C05_628400.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07B TCGA-A8-A07B-10A TCGA-A8-A07B-10A-01D-A012-01 f0ba3ce7-96a9-4b54-9adb-f51e4c40b8ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C05_628400.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07B TCGA-A8-A07B-10A TCGA-A8-A07B-10A-01D-A012-01 f0ba3ce7-96a9-4b54-9adb-f51e4c40b8ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C05_628400.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A07B TCGA-A8-A07B-10A TCGA-A8-A07B-10A-01D-A017-09 53f3327f-c47a-4e83-91bd-839e161df4da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07B TCGA-A8-A07B-10A TCGA-A8-A07B-10A-01D-A018-08 06288b6f-fff2-4f93-92b0-9ba207653029 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07B TCGA-A8-A07B-10A TCGA-A8-A07B-10A-01D-A069-02 9a46af80-cbf1-4830-b53a-97d0780b587f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07B TCGA-A8-A07B-10A TCGA-A8-A07B-10A-01D-A19H-09 92dc6bb4-b622-4653-b5b1-9ff180221bf3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07B TCGA-A8-A07B-10A TCGA-A8-A07B-10A-01W-A021-09 0a007a6c-2f85-4061-9949-841299150cfc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07B TCGA-A8-A07B-10A TCGA-A8-A07B-10A-01W-A021-09 0a007a6c-2f85-4061-9949-841299150cfc Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A07B TCGA-A8-A07B-10A TCGA-A8-A07B-10A-01W-A022-08 6295e8af-1539-4545-a761-2b20e46f9920 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07B TCGA-A8-A07B-10A TCGA-A8-A07B-10A-01X-A025-09 5f30d512-32d1-4b0b-95e7-680b7c03bd87 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07B TCGA-A8-A07B-10A TCGA-A8-A07B-10A-01X-A026-08 356e1c37-bd3b-4bdc-8a76-a3b19f84987e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11D-A032-05 fcd4dc36-ceb9-46f4-b09f-3f61ab50b989 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11D-A032-05 fcd4dc36-ceb9-46f4-b09f-3f61ab50b989 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A8-A07C-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11D-A032-05 fcd4dc36-ceb9-46f4-b09f-3f61ab50b989 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A8-A07C-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11D-A032-05 fcd4dc36-ceb9-46f4-b09f-3f61ab50b989 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A8-A07C-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11D-A033-02 0f678c1c-5ed9-4ae4-b805-c818f33b29bd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11D-A036-01 a348fec6-0ca5-4cb8-9114-94be66a2e6a9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11D-A036-01 a348fec6-0ca5-4cb8-9114-94be66a2e6a9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11D-A036-01 a348fec6-0ca5-4cb8-9114-94be66a2e6a9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11D-A036-01 a348fec6-0ca5-4cb8-9114-94be66a2e6a9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11D-A036-01 a348fec6-0ca5-4cb8-9114-94be66a2e6a9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11D-A036-01 a348fec6-0ca5-4cb8-9114-94be66a2e6a9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11D-A036-01 a348fec6-0ca5-4cb8-9114-94be66a2e6a9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C10_666916.after_5NN.copynumber.data.txt'. TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11D-A044-08 f303de52-1645-4509-abb9-8cca5457dc91 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11D-A045-09 6ab33f67-b69d-4a2d-a424-841f5fbf1ee7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11D-A045-09 6ab33f67-b69d-4a2d-a424-841f5fbf1ee7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11R-A034-07 19d713e8-e754-44a4-9b23-0ef70f5d6b44 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11R-A034-07 19d713e8-e754-44a4-9b23-0ef70f5d6b44 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012072_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11R-A034-07 19d713e8-e754-44a4-9b23-0ef70f5d6b44 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012072_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11R-A034-07 19d713e8-e754-44a4-9b23-0ef70f5d6b44 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012072_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11R-A034-07 19d713e8-e754-44a4-9b23-0ef70f5d6b44 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446399.TCGA-A8-A07C-01A-11R-A034-07.110225_UNC12-SN629_0064_BB041HABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11R-A034-07 19d713e8-e754-44a4-9b23-0ef70f5d6b44 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446404.TCGA-A8-A07C-01A-11R-A034-07.110225_UNC12-SN629_0064_BB041HABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11R-A034-07 19d713e8-e754-44a4-9b23-0ef70f5d6b44 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446453.TCGA-A8-A07C-01A-11R-A034-07.110225_UNC12-SN629_0064_BB041HABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11R-A035-13 d301a730-cccf-4d4c-ab4a-1b6209d827a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11R-A035-13 d301a730-cccf-4d4c-ab4a-1b6209d827a2 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07C-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11R-A035-13 d301a730-cccf-4d4c-ab4a-1b6209d827a2 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07C-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11W-A050-09 a9b305fe-0f15-46c9-b554-f606fbaf2e52 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11W-A051-08 37f68903-0c02-43f0-9a56-ec4be6e620c7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11X-A048-08 f465b6b5-9f9b-4140-82f0-516769287e5e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07C TCGA-A8-A07C-01A TCGA-A8-A07C-01A-11X-A049-09 529eee81-7ba5-44a5-a9eb-ec99d88debaf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07C TCGA-A8-A07C-10A TCGA-A8-A07C-10A-01D-A031-02 bdd8797e-6639-4a6e-9adf-e46a4affaac7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07C TCGA-A8-A07C-10A TCGA-A8-A07C-10A-01D-A037-01 693a6e5b-676b-4356-b36b-d3058fc39d07 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07C TCGA-A8-A07C-10A TCGA-A8-A07C-10A-01D-A037-01 693a6e5b-676b-4356-b36b-d3058fc39d07 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C08_666904.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A8-A07C TCGA-A8-A07C-10A TCGA-A8-A07C-10A-01D-A037-01 693a6e5b-676b-4356-b36b-d3058fc39d07 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C08_666904.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07C TCGA-A8-A07C-10A TCGA-A8-A07C-10A-01D-A037-01 693a6e5b-676b-4356-b36b-d3058fc39d07 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C08_666904.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07C TCGA-A8-A07C-10A TCGA-A8-A07C-10A-01D-A037-01 693a6e5b-676b-4356-b36b-d3058fc39d07 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C08_666904.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07C TCGA-A8-A07C-10A TCGA-A8-A07C-10A-01D-A037-01 693a6e5b-676b-4356-b36b-d3058fc39d07 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C08_666904.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07C TCGA-A8-A07C-10A TCGA-A8-A07C-10A-01D-A037-01 693a6e5b-676b-4356-b36b-d3058fc39d07 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C08_666904.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07C TCGA-A8-A07C-10A TCGA-A8-A07C-10A-01D-A037-01 693a6e5b-676b-4356-b36b-d3058fc39d07 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C08_666904.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07C TCGA-A8-A07C-10A TCGA-A8-A07C-10A-01D-A037-01 693a6e5b-676b-4356-b36b-d3058fc39d07 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C08_666904.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A8-A07C TCGA-A8-A07C-10A TCGA-A8-A07C-10A-01D-A046-08 59d9f4c6-2b72-494d-b8ab-b9f1fdc15f65 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07C TCGA-A8-A07C-10A TCGA-A8-A07C-10A-01D-A047-09 c5239e8f-d13c-4d12-96b1-32f7c09b1eef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07C TCGA-A8-A07C-10A TCGA-A8-A07C-10A-01W-A053-08 af39e609-88f8-4e88-b3b9-3411c4bc00c0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07C TCGA-A8-A07C-10A TCGA-A8-A07C-10A-01W-A055-09 63565009-d197-4c5b-9dec-e8de2e4daece Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07C TCGA-A8-A07C-10A TCGA-A8-A07C-10A-01W-A055-09 63565009-d197-4c5b-9dec-e8de2e4daece Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A07C TCGA-A8-A07C-10A TCGA-A8-A07C-10A-01X-A052-08 5b1521f0-8a86-4486-b97a-ef061432dab6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07C TCGA-A8-A07C-10A TCGA-A8-A07C-10A-01X-A054-09 61c18b1f-fb72-40e6-88af-1afe34b9172b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11D-A032-05 388370fb-0dc4-46b8-87b5-be3384defc5d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11D-A032-05 388370fb-0dc4-46b8-87b5-be3384defc5d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A8-A07E-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11D-A032-05 388370fb-0dc4-46b8-87b5-be3384defc5d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A8-A07E-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11D-A032-05 388370fb-0dc4-46b8-87b5-be3384defc5d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A8-A07E-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11D-A033-02 78682525-4be6-4f92-96e1-ff521670fec4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11D-A036-01 16f17633-0917-4fe4-bea8-a1301a37bcc9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11D-A036-01 16f17633-0917-4fe4-bea8-a1301a37bcc9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D06_667022.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11D-A036-01 16f17633-0917-4fe4-bea8-a1301a37bcc9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D06_667022.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11D-A036-01 16f17633-0917-4fe4-bea8-a1301a37bcc9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D06_667022.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11D-A036-01 16f17633-0917-4fe4-bea8-a1301a37bcc9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D06_667022.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11D-A036-01 16f17633-0917-4fe4-bea8-a1301a37bcc9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D06_667022.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11D-A036-01 16f17633-0917-4fe4-bea8-a1301a37bcc9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D06_667022.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11D-A036-01 16f17633-0917-4fe4-bea8-a1301a37bcc9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D06_667022.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11D-A036-01 16f17633-0917-4fe4-bea8-a1301a37bcc9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D06_667022.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11D-A044-08 64ec6698-27fe-44c9-89e7-0b7722c4d22b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11D-A045-09 6851c0cd-7505-4e2d-90e0-e8ad22336417 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11R-A034-07 3510559d-33b7-423a-88c9-d8c42270d546 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11R-A034-07 3510559d-33b7-423a-88c9-d8c42270d546 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012073_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11R-A034-07 3510559d-33b7-423a-88c9-d8c42270d546 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012073_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11R-A034-07 3510559d-33b7-423a-88c9-d8c42270d546 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012073_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11R-A034-07 3510559d-33b7-423a-88c9-d8c42270d546 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406785.TCGA-A8-A07E-01A-11R-A034-07.110725_UNC9-SN296_0208_AC0477ABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11R-A034-07 3510559d-33b7-423a-88c9-d8c42270d546 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406789.TCGA-A8-A07E-01A-11R-A034-07.110725_UNC9-SN296_0208_AC0477ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11R-A034-07 3510559d-33b7-423a-88c9-d8c42270d546 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406825.TCGA-A8-A07E-01A-11R-A034-07.110725_UNC9-SN296_0208_AC0477ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11R-A035-13 7712c11f-898a-47fe-ac31-d8edd4b253a7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11R-A035-13 7712c11f-898a-47fe-ac31-d8edd4b253a7 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07E-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11R-A035-13 7712c11f-898a-47fe-ac31-d8edd4b253a7 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07E-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11W-A050-09 fa018a20-2c26-4d47-831f-75280b6464df Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11W-A050-09 fa018a20-2c26-4d47-831f-75280b6464df Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11W-A051-08 7c7e1cf5-3b37-4c43-a4af-fe4c478cb4ad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11X-A048-08 00d38469-0a07-4d87-8b9f-1f819ee8f3e3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-01A TCGA-A8-A07E-01A-11X-A049-09 9f8e4771-c5a5-4f12-9bc3-78f3130a27c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-10A TCGA-A8-A07E-10A-01D-A031-02 2ad82a1a-74e7-40bb-86df-b1b16fd4623d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-10A TCGA-A8-A07E-10A-01D-A037-01 ef93cebf-24a8-41df-b544-75f1822cf3ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-10A TCGA-A8-A07E-10A-01D-A037-01 ef93cebf-24a8-41df-b544-75f1822cf3ef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A10_666932.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-10A TCGA-A8-A07E-10A-01D-A037-01 ef93cebf-24a8-41df-b544-75f1822cf3ef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A10_666932.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-10A TCGA-A8-A07E-10A-01D-A037-01 ef93cebf-24a8-41df-b544-75f1822cf3ef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A10_666932.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-10A TCGA-A8-A07E-10A-01D-A037-01 ef93cebf-24a8-41df-b544-75f1822cf3ef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A10_666932.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-10A TCGA-A8-A07E-10A-01D-A037-01 ef93cebf-24a8-41df-b544-75f1822cf3ef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A10_666932.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-10A TCGA-A8-A07E-10A-01D-A037-01 ef93cebf-24a8-41df-b544-75f1822cf3ef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A10_666932.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-10A TCGA-A8-A07E-10A-01D-A037-01 ef93cebf-24a8-41df-b544-75f1822cf3ef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A10_666932.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-10A TCGA-A8-A07E-10A-01D-A037-01 ef93cebf-24a8-41df-b544-75f1822cf3ef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A10_666932.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-10A TCGA-A8-A07E-10A-01D-A046-08 fe3051aa-c065-484d-8c87-08cfc5692af4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-10A TCGA-A8-A07E-10A-01D-A047-09 85682127-21ab-46b0-bd8e-60e896c17147 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-10A TCGA-A8-A07E-10A-01W-A053-08 6524a445-4dbf-47af-915f-3f84a09b26ff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-10A TCGA-A8-A07E-10A-01W-A055-09 305efad7-ff5c-4c4a-8f59-2f5fd43710ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-10A TCGA-A8-A07E-10A-01W-A055-09 305efad7-ff5c-4c4a-8f59-2f5fd43710ec Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-10A TCGA-A8-A07E-10A-01X-A052-08 ac43a2d1-0267-4ec1-80f2-cc5782b3d85a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07E TCGA-A8-A07E-10A TCGA-A8-A07E-10A-01X-A054-09 4075e3be-b7e6-4efc-ab75-e366106ff00f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11D-A00Y-05 7a661a8a-6446-4e33-bca6-81ed625a0d75 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11D-A00Y-05 7a661a8a-6446-4e33-bca6-81ed625a0d75 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A07F-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11D-A00Y-05 7a661a8a-6446-4e33-bca6-81ed625a0d75 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A07F-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11D-A00Y-05 7a661a8a-6446-4e33-bca6-81ed625a0d75 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A07F-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11D-A011-01 1609caae-f341-4227-ac2a-a76a6c253e95 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11D-A011-01 1609caae-f341-4227-ac2a-a76a6c253e95 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D10_628322.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11D-A011-01 1609caae-f341-4227-ac2a-a76a6c253e95 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D10_628322.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11D-A011-01 1609caae-f341-4227-ac2a-a76a6c253e95 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D10_628322.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11D-A011-01 1609caae-f341-4227-ac2a-a76a6c253e95 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D10_628322.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11D-A011-01 1609caae-f341-4227-ac2a-a76a6c253e95 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D10_628322.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11D-A011-01 1609caae-f341-4227-ac2a-a76a6c253e95 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D10_628322.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11D-A011-01 1609caae-f341-4227-ac2a-a76a6c253e95 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D10_628322.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11D-A011-01 1609caae-f341-4227-ac2a-a76a6c253e95 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D10_628322.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11D-A015-09 d1922e5a-50cf-4937-8d4b-ebe1d5a31b22 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11D-A016-08 e34492bb-6f9e-49cb-9a16-c0ae0fe97627 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11D-A068-02 0c4e198e-0876-476a-85b9-64b4b8acee59 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11R-A00Z-07 f6fd41e3-c597-4c5d-8f47-a315be0330f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11R-A00Z-07 f6fd41e3-c597-4c5d-8f47-a315be0330f8 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011807_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11R-A00Z-07 f6fd41e3-c597-4c5d-8f47-a315be0330f8 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011807_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11R-A00Z-07 f6fd41e3-c597-4c5d-8f47-a315be0330f8 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011807_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11R-A00Z-07 f6fd41e3-c597-4c5d-8f47-a315be0330f8 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593610.TCGA-A8-A07F-01A-11R-A00Z-07.110222_SN627_0062_A81FPKABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11R-A00Z-07 f6fd41e3-c597-4c5d-8f47-a315be0330f8 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593616.TCGA-A8-A07F-01A-11R-A00Z-07.110222_SN627_0062_A81FPKABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11R-A00Z-07 f6fd41e3-c597-4c5d-8f47-a315be0330f8 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593731.TCGA-A8-A07F-01A-11R-A00Z-07.110222_SN627_0062_A81FPKABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11R-A010-13 d6328ece-3004-4afe-aabb-2280e0ac63c5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11R-A038-13 ac260185-35a8-487c-8bd0-878eb8c79f34 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11R-A038-13 ac260185-35a8-487c-8bd0-878eb8c79f34 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07F-01A-11R-A038-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11R-A038-13 ac260185-35a8-487c-8bd0-878eb8c79f34 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07F-01A-11R-A038-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11W-A019-09 73d907e6-4ba0-431f-a009-8366644ffaf0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11W-A019-09 73d907e6-4ba0-431f-a009-8366644ffaf0 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11W-A020-08 b97a6178-c169-4be1-af4d-b9b7dc028317 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11X-A023-09 3d5ff7cd-3258-4dde-ae1f-bd4735fe1274 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07F TCGA-A8-A07F-01A TCGA-A8-A07F-01A-11X-A024-08 32c930e3-97fb-4337-8292-49df56548659 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07F TCGA-A8-A07F-10A TCGA-A8-A07F-10A-01D-A012-01 675b4881-70c5-4015-b5bf-bad46a486a7c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07F TCGA-A8-A07F-10A TCGA-A8-A07F-10A-01D-A012-01 675b4881-70c5-4015-b5bf-bad46a486a7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C02_628316.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A07F TCGA-A8-A07F-10A TCGA-A8-A07F-10A-01D-A012-01 675b4881-70c5-4015-b5bf-bad46a486a7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C02_628316.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07F TCGA-A8-A07F-10A TCGA-A8-A07F-10A-01D-A012-01 675b4881-70c5-4015-b5bf-bad46a486a7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C02_628316.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07F TCGA-A8-A07F-10A TCGA-A8-A07F-10A-01D-A012-01 675b4881-70c5-4015-b5bf-bad46a486a7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C02_628316.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07F TCGA-A8-A07F-10A TCGA-A8-A07F-10A-01D-A012-01 675b4881-70c5-4015-b5bf-bad46a486a7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C02_628316.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07F TCGA-A8-A07F-10A TCGA-A8-A07F-10A-01D-A012-01 675b4881-70c5-4015-b5bf-bad46a486a7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C02_628316.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07F TCGA-A8-A07F-10A TCGA-A8-A07F-10A-01D-A012-01 675b4881-70c5-4015-b5bf-bad46a486a7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C02_628316.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07F TCGA-A8-A07F-10A TCGA-A8-A07F-10A-01D-A012-01 675b4881-70c5-4015-b5bf-bad46a486a7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C02_628316.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A07F TCGA-A8-A07F-10A TCGA-A8-A07F-10A-01D-A017-09 ecc7f8a7-9b9a-4801-ab8e-a86bdcf35909 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07F TCGA-A8-A07F-10A TCGA-A8-A07F-10A-01D-A018-08 e7b92b8e-8048-4147-89f4-a3f0f02a7c55 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07F TCGA-A8-A07F-10A TCGA-A8-A07F-10A-01D-A069-02 516e8d80-bf13-4970-86ca-8e3fbf926afa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07F TCGA-A8-A07F-10A TCGA-A8-A07F-10A-01W-A021-09 5281a45b-e0b8-404f-ae25-91cd7ae5bf30 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07F TCGA-A8-A07F-10A TCGA-A8-A07F-10A-01W-A021-09 5281a45b-e0b8-404f-ae25-91cd7ae5bf30 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A07F TCGA-A8-A07F-10A TCGA-A8-A07F-10A-01W-A022-08 4461d6d4-effe-4c17-8748-21c1e6b7e21e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07F TCGA-A8-A07F-10A TCGA-A8-A07F-10A-01X-A025-09 d207c1de-973a-494b-8dc2-1983685b9c53 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07F TCGA-A8-A07F-10A TCGA-A8-A07F-10A-01X-A026-08 f89cb9aa-0054-47dc-8556-ada4ad39db70 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11D-A032-05 18d33a9a-3c7b-456e-825b-14db025f4faf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11D-A032-05 18d33a9a-3c7b-456e-825b-14db025f4faf DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A8-A07G-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11D-A032-05 18d33a9a-3c7b-456e-825b-14db025f4faf DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A8-A07G-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11D-A032-05 18d33a9a-3c7b-456e-825b-14db025f4faf DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A8-A07G-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11D-A033-02 d355d5b0-110e-496c-ab9f-42548e23f68b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11D-A036-01 acf17ee7-c238-4602-9ec3-855c8d334089 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11D-A036-01 acf17ee7-c238-4602-9ec3-855c8d334089 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C06_666984.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11D-A036-01 acf17ee7-c238-4602-9ec3-855c8d334089 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C06_666984.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11D-A036-01 acf17ee7-c238-4602-9ec3-855c8d334089 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C06_666984.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11D-A036-01 acf17ee7-c238-4602-9ec3-855c8d334089 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C06_666984.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11D-A036-01 acf17ee7-c238-4602-9ec3-855c8d334089 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C06_666984.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11D-A036-01 acf17ee7-c238-4602-9ec3-855c8d334089 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C06_666984.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11D-A036-01 acf17ee7-c238-4602-9ec3-855c8d334089 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C06_666984.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11D-A036-01 acf17ee7-c238-4602-9ec3-855c8d334089 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C06_666984.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11D-A044-08 2ed15788-ed3d-4a6c-8a5b-28a62fc57e4e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11D-A045-09 e147d53a-ec39-48e2-8bea-155dd23639d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11R-A034-07 aad6a297-72fe-4483-8c81-b7bef2522437 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11R-A034-07 aad6a297-72fe-4483-8c81-b7bef2522437 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012074_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11R-A034-07 aad6a297-72fe-4483-8c81-b7bef2522437 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012074_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11R-A034-07 aad6a297-72fe-4483-8c81-b7bef2522437 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012074_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11R-A034-07 aad6a297-72fe-4483-8c81-b7bef2522437 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_657012.TCGA-A8-A07G-01A-11R-A034-07.110302_UNC11-SN627_0066_AB047KABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11R-A034-07 aad6a297-72fe-4483-8c81-b7bef2522437 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_657134.TCGA-A8-A07G-01A-11R-A034-07.110302_UNC11-SN627_0066_AB047KABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11R-A034-07 aad6a297-72fe-4483-8c81-b7bef2522437 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_657156.TCGA-A8-A07G-01A-11R-A034-07.110302_UNC11-SN627_0066_AB047KABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11R-A035-13 c18ac125-2ed3-4ccc-9583-a3aa52648c7c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11R-A035-13 c18ac125-2ed3-4ccc-9583-a3aa52648c7c miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07G-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11R-A035-13 c18ac125-2ed3-4ccc-9583-a3aa52648c7c miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07G-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11W-A050-09 49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11W-A050-09 49f77aa5-446b-49f6-bd1b-02d3ff7b9dfc Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11W-A051-08 2561db69-7e1f-4e32-bacc-f2b1825fcabe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11X-A048-08 ed0b4fb8-7cb9-48f4-83d6-18ca758363f1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07G TCGA-A8-A07G-01A TCGA-A8-A07G-01A-11X-A049-09 87f270ea-6e22-451a-92ae-efa8d3f1fb29 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07G TCGA-A8-A07G-10A TCGA-A8-A07G-10A-01D-A031-02 f9765a5c-3ddf-4b6f-aa9d-41a70c441617 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07G TCGA-A8-A07G-10A TCGA-A8-A07G-10A-01D-A037-01 36124846-6854-4de7-ba70-1709cd098318 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07G TCGA-A8-A07G-10A TCGA-A8-A07G-10A-01D-A037-01 36124846-6854-4de7-ba70-1709cd098318 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A12_667004.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A8-A07G TCGA-A8-A07G-10A TCGA-A8-A07G-10A-01D-A037-01 36124846-6854-4de7-ba70-1709cd098318 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A12_667004.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07G TCGA-A8-A07G-10A TCGA-A8-A07G-10A-01D-A037-01 36124846-6854-4de7-ba70-1709cd098318 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A12_667004.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07G TCGA-A8-A07G-10A TCGA-A8-A07G-10A-01D-A037-01 36124846-6854-4de7-ba70-1709cd098318 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A12_667004.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07G TCGA-A8-A07G-10A TCGA-A8-A07G-10A-01D-A037-01 36124846-6854-4de7-ba70-1709cd098318 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A12_667004.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07G TCGA-A8-A07G-10A TCGA-A8-A07G-10A-01D-A037-01 36124846-6854-4de7-ba70-1709cd098318 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A12_667004.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07G TCGA-A8-A07G-10A TCGA-A8-A07G-10A-01D-A037-01 36124846-6854-4de7-ba70-1709cd098318 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A12_667004.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07G TCGA-A8-A07G-10A TCGA-A8-A07G-10A-01D-A037-01 36124846-6854-4de7-ba70-1709cd098318 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A12_667004.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A8-A07G TCGA-A8-A07G-10A TCGA-A8-A07G-10A-01D-A046-08 55a51e53-0e5a-4460-b776-e59c33e6d455 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07G TCGA-A8-A07G-10A TCGA-A8-A07G-10A-01D-A047-09 d85119e4-c56a-444c-9036-d4603f6ddbb9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07G TCGA-A8-A07G-10A TCGA-A8-A07G-10A-01W-A053-08 cccb7d3d-1c4f-456b-beb1-35592cffa6ad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07G TCGA-A8-A07G-10A TCGA-A8-A07G-10A-01W-A055-09 a50c80c4-329f-456f-b86c-c97d2443ab75 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07G TCGA-A8-A07G-10A TCGA-A8-A07G-10A-01W-A055-09 a50c80c4-329f-456f-b86c-c97d2443ab75 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A07G TCGA-A8-A07G-10A TCGA-A8-A07G-10A-01X-A052-08 ecc7f4df-d76a-4aeb-9c20-8198dd085a69 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07G TCGA-A8-A07G-10A TCGA-A8-A07G-10A-01X-A054-09 a0c95d23-cd76-4dae-80a5-6dc33ec9c7da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11D-A00Y-05 6b425bd7-cfd6-495a-b688-7db156d686c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11D-A00Y-05 6b425bd7-cfd6-495a-b688-7db156d686c8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A07I-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11D-A00Y-05 6b425bd7-cfd6-495a-b688-7db156d686c8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A07I-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11D-A00Y-05 6b425bd7-cfd6-495a-b688-7db156d686c8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A07I-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11D-A011-01 8c976a66-2f34-4441-8f79-a13136e1dbe7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11D-A011-01 8c976a66-2f34-4441-8f79-a13136e1dbe7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F04_628376.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11D-A011-01 8c976a66-2f34-4441-8f79-a13136e1dbe7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F04_628376.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11D-A011-01 8c976a66-2f34-4441-8f79-a13136e1dbe7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F04_628376.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11D-A011-01 8c976a66-2f34-4441-8f79-a13136e1dbe7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F04_628376.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11D-A011-01 8c976a66-2f34-4441-8f79-a13136e1dbe7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F04_628376.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11D-A011-01 8c976a66-2f34-4441-8f79-a13136e1dbe7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F04_628376.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11D-A011-01 8c976a66-2f34-4441-8f79-a13136e1dbe7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F04_628376.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11D-A011-01 8c976a66-2f34-4441-8f79-a13136e1dbe7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F04_628376.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11D-A015-09 a0f3bc60-814b-487e-a544-d8c16fa47b12 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11D-A016-08 b25829c3-a3f1-4dae-af44-3a213a056911 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11D-A068-02 efffa9d8-a7a4-4da1-87cb-e1627b55f071 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11D-A19F-05 81b9d94d-46da-42d8-8cc9-a730c0e1b99b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11D-A19H-09 a6c14ebc-81a2-44f7-af87-2b7ec85e5696 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11R-A00Z-07 670eab31-e873-4404-bbff-1b427e7b80c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11R-A00Z-07 670eab31-e873-4404-bbff-1b427e7b80c1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011831_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11R-A00Z-07 670eab31-e873-4404-bbff-1b427e7b80c1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011831_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11R-A00Z-07 670eab31-e873-4404-bbff-1b427e7b80c1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011831_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11R-A010-13 fcfed4c3-fae3-4116-b7fb-e568e745c1dd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11R-A010-13 fcfed4c3-fae3-4116-b7fb-e568e745c1dd miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07I-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11R-A010-13 fcfed4c3-fae3-4116-b7fb-e568e745c1dd miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07I-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11W-A019-09 7718c3f0-1c90-4940-bc30-ea4f417851bb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11W-A019-09 7718c3f0-1c90-4940-bc30-ea4f417851bb Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11W-A020-08 a5bbebe7-cf05-4e6c-8419-e0e9fadd3710 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11X-A023-09 722805ec-246e-49a2-93ea-37eec40fed6f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07I TCGA-A8-A07I-01A TCGA-A8-A07I-01A-11X-A024-08 cb6746f3-0e2c-4982-ba9d-299094fd3b74 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07I TCGA-A8-A07I-10A TCGA-A8-A07I-10A-01D-A012-01 40e717a4-3c47-4299-ae5e-fc37c009199f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07I TCGA-A8-A07I-10A TCGA-A8-A07I-10A-01D-A012-01 40e717a4-3c47-4299-ae5e-fc37c009199f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E02_628380.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A07I TCGA-A8-A07I-10A TCGA-A8-A07I-10A-01D-A012-01 40e717a4-3c47-4299-ae5e-fc37c009199f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E02_628380.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07I TCGA-A8-A07I-10A TCGA-A8-A07I-10A-01D-A012-01 40e717a4-3c47-4299-ae5e-fc37c009199f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E02_628380.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07I TCGA-A8-A07I-10A TCGA-A8-A07I-10A-01D-A012-01 40e717a4-3c47-4299-ae5e-fc37c009199f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E02_628380.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07I TCGA-A8-A07I-10A TCGA-A8-A07I-10A-01D-A012-01 40e717a4-3c47-4299-ae5e-fc37c009199f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E02_628380.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07I TCGA-A8-A07I-10A TCGA-A8-A07I-10A-01D-A012-01 40e717a4-3c47-4299-ae5e-fc37c009199f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E02_628380.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07I TCGA-A8-A07I-10A TCGA-A8-A07I-10A-01D-A012-01 40e717a4-3c47-4299-ae5e-fc37c009199f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E02_628380.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07I TCGA-A8-A07I-10A TCGA-A8-A07I-10A-01D-A012-01 40e717a4-3c47-4299-ae5e-fc37c009199f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E02_628380.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A07I TCGA-A8-A07I-10A TCGA-A8-A07I-10A-01D-A017-09 1aa10e14-9a58-43eb-8e02-9458a3f4880c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07I TCGA-A8-A07I-10A TCGA-A8-A07I-10A-01D-A018-08 82f71aa1-37d4-4331-8e04-78913f8cbf53 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07I TCGA-A8-A07I-10A TCGA-A8-A07I-10A-01D-A069-02 4a48ae62-7e88-4940-87f2-68b6f0469adf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07I TCGA-A8-A07I-10A TCGA-A8-A07I-10A-01D-A19H-09 ebe37974-093b-488c-8557-1dda59f6700b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07I TCGA-A8-A07I-10A TCGA-A8-A07I-10A-01W-A021-09 cca486f4-dbe7-4629-b5bc-bce1d97f9bfc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07I TCGA-A8-A07I-10A TCGA-A8-A07I-10A-01W-A021-09 cca486f4-dbe7-4629-b5bc-bce1d97f9bfc Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A07I TCGA-A8-A07I-10A TCGA-A8-A07I-10A-01W-A022-08 38edb8ce-854d-4920-89c9-56000b9be175 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07I TCGA-A8-A07I-10A TCGA-A8-A07I-10A-01X-A025-09 695c4f3c-c79c-472e-a23d-e0bb1a0612ea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07I TCGA-A8-A07I-10A TCGA-A8-A07I-10A-01X-A026-08 6bc60432-c1ac-4647-8bb8-4f8e2961b05f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11D-A00Y-05 bbd88229-9eaf-4388-8759-1f654b0857e3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11D-A00Y-05 bbd88229-9eaf-4388-8759-1f654b0857e3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A07J-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11D-A00Y-05 bbd88229-9eaf-4388-8759-1f654b0857e3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A07J-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11D-A00Y-05 bbd88229-9eaf-4388-8759-1f654b0857e3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A07J-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11D-A011-01 8990de9b-eee2-4d3c-9711-87bdf6019586 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11D-A011-01 8990de9b-eee2-4d3c-9711-87bdf6019586 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B05_628290.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11D-A011-01 8990de9b-eee2-4d3c-9711-87bdf6019586 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B05_628290.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11D-A011-01 8990de9b-eee2-4d3c-9711-87bdf6019586 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B05_628290.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11D-A011-01 8990de9b-eee2-4d3c-9711-87bdf6019586 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B05_628290.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11D-A011-01 8990de9b-eee2-4d3c-9711-87bdf6019586 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B05_628290.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11D-A011-01 8990de9b-eee2-4d3c-9711-87bdf6019586 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B05_628290.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11D-A011-01 8990de9b-eee2-4d3c-9711-87bdf6019586 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B05_628290.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11D-A011-01 8990de9b-eee2-4d3c-9711-87bdf6019586 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B05_628290.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11D-A015-09 27cc44dc-86fe-4a33-9799-d58f74145b8c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11D-A016-08 0fa40541-ccd4-4103-b490-c525b3495530 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11D-A068-02 2b177cc0-bbbc-4e99-88ae-b0b357264f4b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11R-A00Z-07 a5405b3a-e351-4e9e-b3fa-07c33e3318d3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11R-A00Z-07 a5405b3a-e351-4e9e-b3fa-07c33e3318d3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011849_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11R-A00Z-07 a5405b3a-e351-4e9e-b3fa-07c33e3318d3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011849_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11R-A00Z-07 a5405b3a-e351-4e9e-b3fa-07c33e3318d3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011849_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11R-A00Z-07 a5405b3a-e351-4e9e-b3fa-07c33e3318d3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446384.TCGA-A8-A07J-01A-11R-A00Z-07.110225_UNC12-SN629_0063_AB041JABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11R-A00Z-07 a5405b3a-e351-4e9e-b3fa-07c33e3318d3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446416.TCGA-A8-A07J-01A-11R-A00Z-07.110225_UNC12-SN629_0063_AB041JABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11R-A00Z-07 a5405b3a-e351-4e9e-b3fa-07c33e3318d3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446444.TCGA-A8-A07J-01A-11R-A00Z-07.110225_UNC12-SN629_0063_AB041JABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11R-A010-13 de849496-cbd7-476e-9794-43786b8d8579 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11W-A019-09 c8eac36c-c3a7-4c88-b928-832ab279045b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11W-A019-09 c8eac36c-c3a7-4c88-b928-832ab279045b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11W-A020-08 c98868cc-eea8-4023-866f-08b07f92751c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11X-A023-09 72ae03e4-ba2c-4b78-8c1a-585de3356c0a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-11X-A024-08 91d76d00-59ef-4fe8-a7be-2fccc55e37b4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-21R-A057-13 5c4f63ec-2d65-4baa-8bf2-13701fb69b10 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-21R-A057-13 5c4f63ec-2d65-4baa-8bf2-13701fb69b10 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07J-01A-21R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07J TCGA-A8-A07J-01A TCGA-A8-A07J-01A-21R-A057-13 5c4f63ec-2d65-4baa-8bf2-13701fb69b10 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07J-01A-21R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07J TCGA-A8-A07J-10A TCGA-A8-A07J-10A-01D-A012-01 83642122-9661-4506-877b-10c0706fae24 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07J TCGA-A8-A07J-10A TCGA-A8-A07J-10A-01D-A012-01 83642122-9661-4506-877b-10c0706fae24 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B10_628262.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A07J TCGA-A8-A07J-10A TCGA-A8-A07J-10A-01D-A012-01 83642122-9661-4506-877b-10c0706fae24 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B10_628262.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07J TCGA-A8-A07J-10A TCGA-A8-A07J-10A-01D-A012-01 83642122-9661-4506-877b-10c0706fae24 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B10_628262.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07J TCGA-A8-A07J-10A TCGA-A8-A07J-10A-01D-A012-01 83642122-9661-4506-877b-10c0706fae24 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B10_628262.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07J TCGA-A8-A07J-10A TCGA-A8-A07J-10A-01D-A012-01 83642122-9661-4506-877b-10c0706fae24 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B10_628262.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07J TCGA-A8-A07J-10A TCGA-A8-A07J-10A-01D-A012-01 83642122-9661-4506-877b-10c0706fae24 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B10_628262.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07J TCGA-A8-A07J-10A TCGA-A8-A07J-10A-01D-A012-01 83642122-9661-4506-877b-10c0706fae24 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B10_628262.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07J TCGA-A8-A07J-10A TCGA-A8-A07J-10A-01D-A012-01 83642122-9661-4506-877b-10c0706fae24 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B10_628262.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A07J TCGA-A8-A07J-10A TCGA-A8-A07J-10A-01D-A017-09 b188e9f9-042a-4a2b-9ea6-ec71f710d3f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07J TCGA-A8-A07J-10A TCGA-A8-A07J-10A-01D-A018-08 4b7ddfb4-1704-4ad9-8884-dd11aab6d1f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07J TCGA-A8-A07J-10A TCGA-A8-A07J-10A-01D-A069-02 f502ec3f-fc57-457c-8d9d-6c831fbd07fe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07J TCGA-A8-A07J-10A TCGA-A8-A07J-10A-01W-A021-09 2dae6992-3060-4e22-9383-698c791cd3b1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07J TCGA-A8-A07J-10A TCGA-A8-A07J-10A-01W-A021-09 2dae6992-3060-4e22-9383-698c791cd3b1 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A07J TCGA-A8-A07J-10A TCGA-A8-A07J-10A-01W-A022-08 04cd1643-c110-4bd8-949f-346dd852e276 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07J TCGA-A8-A07J-10A TCGA-A8-A07J-10A-01X-A025-09 fbf4a08b-b19b-4847-ad97-bb750a131c4d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07J TCGA-A8-A07J-10A TCGA-A8-A07J-10A-01X-A026-08 0f4ab874-8eb7-469a-8560-8664662553f5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11D-A00Y-05 b4eebdc4-12b6-499d-ad32-503031391aaa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11D-A00Y-05 b4eebdc4-12b6-499d-ad32-503031391aaa DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A07L-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11D-A00Y-05 b4eebdc4-12b6-499d-ad32-503031391aaa DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A07L-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11D-A00Y-05 b4eebdc4-12b6-499d-ad32-503031391aaa DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A07L-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11D-A011-01 11e4ced1-680d-482e-85fc-0a518c4f3e81 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11D-A011-01 11e4ced1-680d-482e-85fc-0a518c4f3e81 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G02_628366.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11D-A011-01 11e4ced1-680d-482e-85fc-0a518c4f3e81 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G02_628366.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11D-A011-01 11e4ced1-680d-482e-85fc-0a518c4f3e81 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G02_628366.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11D-A011-01 11e4ced1-680d-482e-85fc-0a518c4f3e81 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G02_628366.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11D-A011-01 11e4ced1-680d-482e-85fc-0a518c4f3e81 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G02_628366.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11D-A011-01 11e4ced1-680d-482e-85fc-0a518c4f3e81 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G02_628366.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11D-A011-01 11e4ced1-680d-482e-85fc-0a518c4f3e81 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G02_628366.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11D-A011-01 11e4ced1-680d-482e-85fc-0a518c4f3e81 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G02_628366.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11D-A015-09 98daee86-cd86-473d-b5c2-adb3e237c365 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11D-A016-08 f87dbacc-4b40-48e2-b317-fdc3d900ed1d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11D-A068-02 22b921b9-6858-4d54-bd50-f6efc67413bf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11R-A00Z-07 76cbecbe-22ef-479a-9306-2f09e1d87757 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11R-A00Z-07 76cbecbe-22ef-479a-9306-2f09e1d87757 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_654377.TCGA-A8-A07L-01A-11R-A00Z-07.110304_UNC12-SN629_0065_AB05PGABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11R-A00Z-07 76cbecbe-22ef-479a-9306-2f09e1d87757 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_654418.TCGA-A8-A07L-01A-11R-A00Z-07.110304_UNC12-SN629_0065_AB05PGABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11R-A00Z-07 76cbecbe-22ef-479a-9306-2f09e1d87757 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_654490.TCGA-A8-A07L-01A-11R-A00Z-07.110304_UNC12-SN629_0065_AB05PGABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11R-A010-13 f5527ebc-babf-48f4-ad46-90cedc4351dd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11R-A010-13 f5527ebc-babf-48f4-ad46-90cedc4351dd miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07L-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11R-A010-13 f5527ebc-babf-48f4-ad46-90cedc4351dd miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07L-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11R-A040-07 247d7b46-cf5e-4f5d-9068-7da0c1a44804 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11R-A040-07 247d7b46-cf5e-4f5d-9068-7da0c1a44804 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012151_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11R-A040-07 247d7b46-cf5e-4f5d-9068-7da0c1a44804 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012151_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11R-A040-07 247d7b46-cf5e-4f5d-9068-7da0c1a44804 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012151_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11W-A019-09 4cc86f29-061e-4058-8e8f-4c48191f52aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11W-A019-09 4cc86f29-061e-4058-8e8f-4c48191f52aa Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11W-A020-08 73be1bc2-17d6-4e12-87b1-2c94bc161d2f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11X-A023-09 84616b8d-3ea3-4598-bfcf-7bee2ac1cd97 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07L TCGA-A8-A07L-01A TCGA-A8-A07L-01A-11X-A024-08 a0d51d8e-caa0-4e4e-b098-3691918dcb34 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07L TCGA-A8-A07L-10A TCGA-A8-A07L-10A-01D-A012-01 766b70d6-03ce-4125-bfb8-92b04770673a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07L TCGA-A8-A07L-10A TCGA-A8-A07L-10A-01D-A012-01 766b70d6-03ce-4125-bfb8-92b04770673a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D08_628230.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A07L TCGA-A8-A07L-10A TCGA-A8-A07L-10A-01D-A012-01 766b70d6-03ce-4125-bfb8-92b04770673a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D08_628230.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07L TCGA-A8-A07L-10A TCGA-A8-A07L-10A-01D-A012-01 766b70d6-03ce-4125-bfb8-92b04770673a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D08_628230.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07L TCGA-A8-A07L-10A TCGA-A8-A07L-10A-01D-A012-01 766b70d6-03ce-4125-bfb8-92b04770673a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D08_628230.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07L TCGA-A8-A07L-10A TCGA-A8-A07L-10A-01D-A012-01 766b70d6-03ce-4125-bfb8-92b04770673a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D08_628230.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07L TCGA-A8-A07L-10A TCGA-A8-A07L-10A-01D-A012-01 766b70d6-03ce-4125-bfb8-92b04770673a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D08_628230.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07L TCGA-A8-A07L-10A TCGA-A8-A07L-10A-01D-A012-01 766b70d6-03ce-4125-bfb8-92b04770673a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D08_628230.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07L TCGA-A8-A07L-10A TCGA-A8-A07L-10A-01D-A012-01 766b70d6-03ce-4125-bfb8-92b04770673a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D08_628230.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A07L TCGA-A8-A07L-10A TCGA-A8-A07L-10A-01D-A017-09 9eaf3a3e-3512-43b2-80e8-d704b7d89978 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07L TCGA-A8-A07L-10A TCGA-A8-A07L-10A-01D-A018-08 db28dc7a-6175-41b3-a78a-2f454854b6f1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07L TCGA-A8-A07L-10A TCGA-A8-A07L-10A-01D-A069-02 7d070a20-d130-40a6-9e83-235d47d9eacd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07L TCGA-A8-A07L-10A TCGA-A8-A07L-10A-01W-A021-09 44a4c963-3b68-4537-a0da-e47fe5f1d7ac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07L TCGA-A8-A07L-10A TCGA-A8-A07L-10A-01W-A021-09 44a4c963-3b68-4537-a0da-e47fe5f1d7ac Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A07L TCGA-A8-A07L-10A TCGA-A8-A07L-10A-01W-A022-08 0eb23387-cc99-4bd4-b67d-983ced7871e0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07L TCGA-A8-A07L-10A TCGA-A8-A07L-10A-01X-A025-09 6dd83737-d4f6-4331-acc4-1c2043ba9a53 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07L TCGA-A8-A07L-10A TCGA-A8-A07L-10A-01X-A026-08 9c8e7673-4cb6-4951-aeba-358954f0cac4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11D-A00Y-05 29ebafe7-a09c-40f4-99bf-593c18e2e7a0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11D-A00Y-05 29ebafe7-a09c-40f4-99bf-593c18e2e7a0 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A07O-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11D-A00Y-05 29ebafe7-a09c-40f4-99bf-593c18e2e7a0 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A07O-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11D-A00Y-05 29ebafe7-a09c-40f4-99bf-593c18e2e7a0 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A07O-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11D-A011-01 8ed5d79e-3f1b-497f-b9da-fde3a6798c21 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11D-A011-01 8ed5d79e-3f1b-497f-b9da-fde3a6798c21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H03_628344.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11D-A011-01 8ed5d79e-3f1b-497f-b9da-fde3a6798c21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H03_628344.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11D-A011-01 8ed5d79e-3f1b-497f-b9da-fde3a6798c21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H03_628344.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11D-A011-01 8ed5d79e-3f1b-497f-b9da-fde3a6798c21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H03_628344.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11D-A011-01 8ed5d79e-3f1b-497f-b9da-fde3a6798c21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H03_628344.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11D-A011-01 8ed5d79e-3f1b-497f-b9da-fde3a6798c21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H03_628344.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11D-A011-01 8ed5d79e-3f1b-497f-b9da-fde3a6798c21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H03_628344.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11D-A011-01 8ed5d79e-3f1b-497f-b9da-fde3a6798c21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H03_628344.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11D-A015-09 105cac44-26cc-461b-a367-51a1be99c79e Complete Clinical Set bio 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1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11R-A00Z-07 0b743ba9-a340-46a0-9276-a5ddd3ee69d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11R-A00Z-07 0b743ba9-a340-46a0-9276-a5ddd3ee69d6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011875_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11R-A00Z-07 0b743ba9-a340-46a0-9276-a5ddd3ee69d6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011875_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11R-A00Z-07 0b743ba9-a340-46a0-9276-a5ddd3ee69d6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011875_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11R-A00Z-07 0b743ba9-a340-46a0-9276-a5ddd3ee69d6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_602087.TCGA-A8-A07O-01A-11R-A00Z-07.111011_UNC12-SN629_0149_AB062VABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11R-A00Z-07 0b743ba9-a340-46a0-9276-a5ddd3ee69d6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_602214.TCGA-A8-A07O-01A-11R-A00Z-07.111011_UNC12-SN629_0149_AB062VABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11R-A00Z-07 0b743ba9-a340-46a0-9276-a5ddd3ee69d6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_602326.TCGA-A8-A07O-01A-11R-A00Z-07.111011_UNC12-SN629_0149_AB062VABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11R-A010-13 be9cfc70-9283-4b95-af15-9507da9fff3c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11R-A038-13 ec790bf3-8b1e-4af8-b0dc-0a79da59f707 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11R-A038-13 ec790bf3-8b1e-4af8-b0dc-0a79da59f707 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07O-01A-11R-A038-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11R-A038-13 ec790bf3-8b1e-4af8-b0dc-0a79da59f707 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07O-01A-11R-A038-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11W-A019-09 4574b64d-8848-46e4-913e-5d318c1f6162 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11W-A019-09 4574b64d-8848-46e4-913e-5d318c1f6162 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11W-A020-08 9f1a1ea4-83dd-4bd4-84f2-211c73b29fe3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11X-A023-09 67788f1a-45de-453a-9058-b0e467fda610 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07O TCGA-A8-A07O-01A TCGA-A8-A07O-01A-11X-A024-08 b410220c-9602-46da-b5fe-e8a29dd7150f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07O TCGA-A8-A07O-10A TCGA-A8-A07O-10A-01D-A012-01 d3d69e0c-003d-4c5a-82e0-ef9161b64868 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07O TCGA-A8-A07O-10A TCGA-A8-A07O-10A-01D-A012-01 d3d69e0c-003d-4c5a-82e0-ef9161b64868 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H01_628304.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A07O TCGA-A8-A07O-10A TCGA-A8-A07O-10A-01D-A012-01 d3d69e0c-003d-4c5a-82e0-ef9161b64868 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H01_628304.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07O TCGA-A8-A07O-10A TCGA-A8-A07O-10A-01D-A012-01 d3d69e0c-003d-4c5a-82e0-ef9161b64868 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H01_628304.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07O TCGA-A8-A07O-10A TCGA-A8-A07O-10A-01D-A012-01 d3d69e0c-003d-4c5a-82e0-ef9161b64868 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H01_628304.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07O TCGA-A8-A07O-10A TCGA-A8-A07O-10A-01D-A012-01 d3d69e0c-003d-4c5a-82e0-ef9161b64868 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H01_628304.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07O TCGA-A8-A07O-10A TCGA-A8-A07O-10A-01D-A012-01 d3d69e0c-003d-4c5a-82e0-ef9161b64868 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H01_628304.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07O TCGA-A8-A07O-10A TCGA-A8-A07O-10A-01D-A012-01 d3d69e0c-003d-4c5a-82e0-ef9161b64868 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H01_628304.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07O TCGA-A8-A07O-10A TCGA-A8-A07O-10A-01D-A012-01 d3d69e0c-003d-4c5a-82e0-ef9161b64868 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H01_628304.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A07O TCGA-A8-A07O-10A TCGA-A8-A07O-10A-01D-A017-09 05832357-0d07-4cbe-bea3-ae21574ff256 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07O TCGA-A8-A07O-10A TCGA-A8-A07O-10A-01D-A018-08 0181f0cd-997f-44d7-92a2-7e050f0a041b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07O TCGA-A8-A07O-10A TCGA-A8-A07O-10A-01D-A069-02 31b58a09-3c95-422c-9fad-632adb6721ee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07O TCGA-A8-A07O-10A TCGA-A8-A07O-10A-01W-A021-09 edde47bb-2b18-4fcf-8c3a-10ea98983e62 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07O TCGA-A8-A07O-10A TCGA-A8-A07O-10A-01W-A021-09 edde47bb-2b18-4fcf-8c3a-10ea98983e62 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A07O TCGA-A8-A07O-10A TCGA-A8-A07O-10A-01W-A022-08 13aef4ff-b904-4088-84c6-df765dcaa723 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07O TCGA-A8-A07O-10A TCGA-A8-A07O-10A-01X-A025-09 80feb386-b7c1-44c9-8c5c-60a44a878037 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07O TCGA-A8-A07O-10A TCGA-A8-A07O-10A-01X-A026-08 46d420b9-dec8-48d1-8abd-96722b12bbbd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11D-A00Y-05 86cd835f-e7ed-4c20-96a2-6cc7da8a6e16 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11D-A00Y-05 86cd835f-e7ed-4c20-96a2-6cc7da8a6e16 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A07P-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11D-A00Y-05 86cd835f-e7ed-4c20-96a2-6cc7da8a6e16 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A07P-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11D-A00Y-05 86cd835f-e7ed-4c20-96a2-6cc7da8a6e16 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A07P-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11D-A011-01 5a7e3234-ced9-46cb-ac95-cbf4c9ef1d85 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11D-A011-01 5a7e3234-ced9-46cb-ac95-cbf4c9ef1d85 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F06_628216.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11D-A011-01 5a7e3234-ced9-46cb-ac95-cbf4c9ef1d85 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F06_628216.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11D-A011-01 5a7e3234-ced9-46cb-ac95-cbf4c9ef1d85 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F06_628216.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11D-A011-01 5a7e3234-ced9-46cb-ac95-cbf4c9ef1d85 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F06_628216.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11D-A011-01 5a7e3234-ced9-46cb-ac95-cbf4c9ef1d85 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F06_628216.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11D-A011-01 5a7e3234-ced9-46cb-ac95-cbf4c9ef1d85 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F06_628216.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11D-A011-01 5a7e3234-ced9-46cb-ac95-cbf4c9ef1d85 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F06_628216.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11D-A011-01 5a7e3234-ced9-46cb-ac95-cbf4c9ef1d85 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F06_628216.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11D-A015-09 258f82cb-3707-4b57-ab29-256ba29b84ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11D-A016-08 1142efe5-32a8-48d2-80c2-1e2b7b02bc0b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11D-A068-02 546f0ddb-34c3-4370-a2cf-70bcee4dcacd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11R-A00Z-07 dad4f72e-cb2c-4015-af6a-53ad0ae45f12 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11R-A00Z-07 dad4f72e-cb2c-4015-af6a-53ad0ae45f12 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011887_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11R-A00Z-07 dad4f72e-cb2c-4015-af6a-53ad0ae45f12 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011887_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11R-A00Z-07 dad4f72e-cb2c-4015-af6a-53ad0ae45f12 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011887_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11R-A00Z-07 dad4f72e-cb2c-4015-af6a-53ad0ae45f12 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593332.TCGA-A8-A07P-01A-11R-A00Z-07.110228_UNC10-SN254_0198_BB041RABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11R-A00Z-07 dad4f72e-cb2c-4015-af6a-53ad0ae45f12 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593336.TCGA-A8-A07P-01A-11R-A00Z-07.110228_UNC10-SN254_0198_BB041RABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11R-A00Z-07 dad4f72e-cb2c-4015-af6a-53ad0ae45f12 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593353.TCGA-A8-A07P-01A-11R-A00Z-07.110228_UNC10-SN254_0198_BB041RABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11R-A010-13 7e1da00e-0c65-434a-aea9-c5b65a05314c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11R-A010-13 7e1da00e-0c65-434a-aea9-c5b65a05314c miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07P-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11R-A010-13 7e1da00e-0c65-434a-aea9-c5b65a05314c miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07P-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11W-A019-09 2b88ff64-bf43-43e8-9ea9-0de571520d72 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11W-A019-09 2b88ff64-bf43-43e8-9ea9-0de571520d72 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11W-A020-08 ba533f20-cef5-4365-9b1b-0ecaa268d61d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11X-A023-09 9209013f-d6c9-4534-a9ad-7afff7d91f9f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07P TCGA-A8-A07P-01A TCGA-A8-A07P-01A-11X-A024-08 078dd955-7b08-42d9-b60e-5222903c3b98 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07P TCGA-A8-A07P-10A TCGA-A8-A07P-10A-01D-A012-01 69a7a17a-01f5-4c6c-b4de-b6c5b06158fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07P TCGA-A8-A07P-10A TCGA-A8-A07P-10A-01D-A012-01 69a7a17a-01f5-4c6c-b4de-b6c5b06158fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G07_628266.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A07P TCGA-A8-A07P-10A TCGA-A8-A07P-10A-01D-A012-01 69a7a17a-01f5-4c6c-b4de-b6c5b06158fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G07_628266.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07P TCGA-A8-A07P-10A TCGA-A8-A07P-10A-01D-A012-01 69a7a17a-01f5-4c6c-b4de-b6c5b06158fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G07_628266.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07P TCGA-A8-A07P-10A TCGA-A8-A07P-10A-01D-A012-01 69a7a17a-01f5-4c6c-b4de-b6c5b06158fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G07_628266.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07P TCGA-A8-A07P-10A TCGA-A8-A07P-10A-01D-A012-01 69a7a17a-01f5-4c6c-b4de-b6c5b06158fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G07_628266.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07P TCGA-A8-A07P-10A TCGA-A8-A07P-10A-01D-A012-01 69a7a17a-01f5-4c6c-b4de-b6c5b06158fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G07_628266.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07P TCGA-A8-A07P-10A TCGA-A8-A07P-10A-01D-A012-01 69a7a17a-01f5-4c6c-b4de-b6c5b06158fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G07_628266.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07P TCGA-A8-A07P-10A TCGA-A8-A07P-10A-01D-A012-01 69a7a17a-01f5-4c6c-b4de-b6c5b06158fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G07_628266.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A07P TCGA-A8-A07P-10A TCGA-A8-A07P-10A-01D-A017-09 ffa1ac86-0da6-45fa-91b4-cd19ed7e61b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07P TCGA-A8-A07P-10A TCGA-A8-A07P-10A-01D-A018-08 803ff8a9-f8c8-4c49-be8f-72c9d4714a52 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07P TCGA-A8-A07P-10A TCGA-A8-A07P-10A-01D-A069-02 29df6892-bd5f-46fc-86ee-c9d9cc54f4f2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07P TCGA-A8-A07P-10A TCGA-A8-A07P-10A-01W-A021-09 43c44bf2-cb01-4747-8481-ce0c65be4863 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07P TCGA-A8-A07P-10A TCGA-A8-A07P-10A-01W-A021-09 43c44bf2-cb01-4747-8481-ce0c65be4863 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A07P TCGA-A8-A07P-10A TCGA-A8-A07P-10A-01W-A022-08 cec95fec-2bd4-4cae-a6a5-e077a2fdaf7b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07P TCGA-A8-A07P-10A TCGA-A8-A07P-10A-01X-A025-09 c0b17338-6e2f-4c34-b1bf-f0f7cf442a60 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07P TCGA-A8-A07P-10A TCGA-A8-A07P-10A-01X-A026-08 1dbccd91-7b29-4d7d-9d53-a28d16c2395d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21D-A032-05 8d56a7bf-0f91-4e31-aac1-ae66f1e674c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21D-A032-05 8d56a7bf-0f91-4e31-aac1-ae66f1e674c8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A8-A07R-01A-21D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21D-A032-05 8d56a7bf-0f91-4e31-aac1-ae66f1e674c8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A8-A07R-01A-21D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21D-A032-05 8d56a7bf-0f91-4e31-aac1-ae66f1e674c8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A8-A07R-01A-21D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21D-A033-02 a93b58dc-0004-42bc-9044-295de3a3113f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21D-A036-01 b5e9e344-a813-442e-8bd4-504111e98c0b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21D-A036-01 b5e9e344-a813-442e-8bd4-504111e98c0b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F01_667056.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21D-A036-01 b5e9e344-a813-442e-8bd4-504111e98c0b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F01_667056.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21D-A036-01 b5e9e344-a813-442e-8bd4-504111e98c0b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F01_667056.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21D-A036-01 b5e9e344-a813-442e-8bd4-504111e98c0b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F01_667056.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21D-A036-01 b5e9e344-a813-442e-8bd4-504111e98c0b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F01_667056.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21D-A036-01 b5e9e344-a813-442e-8bd4-504111e98c0b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F01_667056.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21D-A036-01 b5e9e344-a813-442e-8bd4-504111e98c0b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F01_667056.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21D-A036-01 b5e9e344-a813-442e-8bd4-504111e98c0b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F01_667056.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21D-A044-08 d416315f-0064-4438-884f-872bd92a2705 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21D-A045-09 266c16a4-013a-4b93-9e42-040a57eb4a1a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21R-A034-07 ce045098-cbfb-4c73-9bbe-6a1d677ae0b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21R-A034-07 ce045098-cbfb-4c73-9bbe-6a1d677ae0b0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012075_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21R-A034-07 ce045098-cbfb-4c73-9bbe-6a1d677ae0b0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012075_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21R-A034-07 ce045098-cbfb-4c73-9bbe-6a1d677ae0b0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012075_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21R-A034-07 ce045098-cbfb-4c73-9bbe-6a1d677ae0b0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_656993.TCGA-A8-A07R-01A-21R-A034-07.110302_UNC11-SN627_0066_AB047KABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21R-A034-07 ce045098-cbfb-4c73-9bbe-6a1d677ae0b0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_657009.TCGA-A8-A07R-01A-21R-A034-07.110302_UNC11-SN627_0066_AB047KABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21R-A034-07 ce045098-cbfb-4c73-9bbe-6a1d677ae0b0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_657140.TCGA-A8-A07R-01A-21R-A034-07.110302_UNC11-SN627_0066_AB047KABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21R-A035-13 997e1e50-2d3e-4a89-a04c-0053f30418f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21R-A035-13 997e1e50-2d3e-4a89-a04c-0053f30418f4 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07R-01A-21R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21R-A035-13 997e1e50-2d3e-4a89-a04c-0053f30418f4 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07R-01A-21R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21W-A050-09 f377217c-399f-4b3f-9090-fa5189b2bfc6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21W-A050-09 f377217c-399f-4b3f-9090-fa5189b2bfc6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21W-A051-08 4bcbc7ce-be3e-4948-8c5b-10ca73fb1b42 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21X-A048-08 acbcaaf6-490d-4799-876a-27e07484c70a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07R TCGA-A8-A07R-01A TCGA-A8-A07R-01A-21X-A049-09 c62775b9-c4db-4933-a6bf-86eb61ea1811 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07R TCGA-A8-A07R-10B TCGA-A8-A07R-10B-01D-A031-02 c734c812-c640-47c2-b067-fc2dad52e887 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07R TCGA-A8-A07R-10B TCGA-A8-A07R-10B-01D-A037-01 4643d723-7db2-4f87-8731-83c57c0fd2d9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07R TCGA-A8-A07R-10B TCGA-A8-A07R-10B-01D-A037-01 4643d723-7db2-4f87-8731-83c57c0fd2d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B08_667044.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A8-A07R TCGA-A8-A07R-10B TCGA-A8-A07R-10B-01D-A037-01 4643d723-7db2-4f87-8731-83c57c0fd2d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B08_667044.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07R TCGA-A8-A07R-10B TCGA-A8-A07R-10B-01D-A037-01 4643d723-7db2-4f87-8731-83c57c0fd2d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B08_667044.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07R TCGA-A8-A07R-10B TCGA-A8-A07R-10B-01D-A037-01 4643d723-7db2-4f87-8731-83c57c0fd2d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B08_667044.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07R TCGA-A8-A07R-10B TCGA-A8-A07R-10B-01D-A037-01 4643d723-7db2-4f87-8731-83c57c0fd2d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B08_667044.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07R TCGA-A8-A07R-10B TCGA-A8-A07R-10B-01D-A037-01 4643d723-7db2-4f87-8731-83c57c0fd2d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B08_667044.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07R TCGA-A8-A07R-10B TCGA-A8-A07R-10B-01D-A037-01 4643d723-7db2-4f87-8731-83c57c0fd2d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B08_667044.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07R TCGA-A8-A07R-10B TCGA-A8-A07R-10B-01D-A037-01 4643d723-7db2-4f87-8731-83c57c0fd2d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B08_667044.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A8-A07R TCGA-A8-A07R-10B TCGA-A8-A07R-10B-01D-A046-08 56a07de6-30cb-46f0-924e-cd172bda3154 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07R TCGA-A8-A07R-10B TCGA-A8-A07R-10B-01D-A047-09 33e470a6-8474-437d-9161-050d972d3fc8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07R TCGA-A8-A07R-10B TCGA-A8-A07R-10B-01D-A047-09 33e470a6-8474-437d-9161-050d972d3fc8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A07R TCGA-A8-A07R-10B TCGA-A8-A07R-10B-01W-A053-08 36133092-0958-4b70-9947-c16c565da6e9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07R TCGA-A8-A07R-10B TCGA-A8-A07R-10B-01W-A055-09 9b1daf4e-3889-4f90-904d-729200bf84e6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07R TCGA-A8-A07R-10B TCGA-A8-A07R-10B-01X-A052-08 f0d2a60b-8e00-4a1b-91bf-119ae3474a7d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07R TCGA-A8-A07R-10B TCGA-A8-A07R-10B-01X-A054-09 53878328-4662-45c3-a1ae-2ede7ff50a12 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11D-A032-05 7ccff79d-b4ee-4aad-b8eb-07b444917bed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11D-A032-05 7ccff79d-b4ee-4aad-b8eb-07b444917bed DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A8-A07S-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11D-A032-05 7ccff79d-b4ee-4aad-b8eb-07b444917bed DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A8-A07S-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11D-A032-05 7ccff79d-b4ee-4aad-b8eb-07b444917bed DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A8-A07S-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11D-A033-02 d143003f-5787-4e26-b4e7-c2c6bbfdb042 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11D-A036-01 3d19e369-66d9-425c-b692-b82da1c5455a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11D-A036-01 3d19e369-66d9-425c-b692-b82da1c5455a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F02_667030.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11D-A036-01 3d19e369-66d9-425c-b692-b82da1c5455a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F02_667030.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11D-A036-01 3d19e369-66d9-425c-b692-b82da1c5455a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F02_667030.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11D-A036-01 3d19e369-66d9-425c-b692-b82da1c5455a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F02_667030.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11D-A036-01 3d19e369-66d9-425c-b692-b82da1c5455a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F02_667030.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11D-A036-01 3d19e369-66d9-425c-b692-b82da1c5455a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F02_667030.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11D-A036-01 3d19e369-66d9-425c-b692-b82da1c5455a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F02_667030.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11D-A036-01 3d19e369-66d9-425c-b692-b82da1c5455a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F02_667030.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11D-A044-08 97a4b0c4-41f2-4153-a206-488b22385f7d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11D-A045-09 375851a7-f9fd-43ad-9530-85f6ed1871ba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11R-A034-07 15acd388-f958-4f43-bc38-39bab4cb830e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11R-A034-07 15acd388-f958-4f43-bc38-39bab4cb830e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012076_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11R-A034-07 15acd388-f958-4f43-bc38-39bab4cb830e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012076_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11R-A034-07 15acd388-f958-4f43-bc38-39bab4cb830e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012076_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11R-A034-07 15acd388-f958-4f43-bc38-39bab4cb830e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_656958.TCGA-A8-A07S-01A-11R-A034-07.110302_UNC11-SN627_0066_AB047KABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11R-A034-07 15acd388-f958-4f43-bc38-39bab4cb830e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_657106.TCGA-A8-A07S-01A-11R-A034-07.110302_UNC11-SN627_0066_AB047KABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11R-A034-07 15acd388-f958-4f43-bc38-39bab4cb830e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_657131.TCGA-A8-A07S-01A-11R-A034-07.110302_UNC11-SN627_0066_AB047KABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11R-A035-13 529cd1c3-6c2e-4957-8ccf-dc756ad8b7f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11R-A035-13 529cd1c3-6c2e-4957-8ccf-dc756ad8b7f8 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07S-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11R-A035-13 529cd1c3-6c2e-4957-8ccf-dc756ad8b7f8 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07S-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11W-A050-09 b9d27aa5-62a1-4642-ba32-d972f0ff931e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11W-A051-08 d56bd25e-6e60-4c88-88d7-756a13cbfe3f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11X-A048-08 e1ced7dd-82c9-47da-bdb9-1f5ab9a0bc31 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07S TCGA-A8-A07S-01A TCGA-A8-A07S-01A-11X-A049-09 60f0807b-62a2-4c0d-996b-b7b280ba634b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07S TCGA-A8-A07S-10B TCGA-A8-A07S-10B-01D-A031-02 67428422-21ae-4fa7-8aac-808122e19778 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07S TCGA-A8-A07S-10B TCGA-A8-A07S-10B-01D-A037-01 f8a40832-25e9-4849-9ceb-2aceaabf4e73 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C11_666998.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C11_666998.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C11_666998.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C11_666998.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C11_666998.ismpolish.data.txt'. TCGA-A8-A07S TCGA-A8-A07S-10B TCGA-A8-A07S-10B-01D-A037-01 f8a40832-25e9-4849-9ceb-2aceaabf4e73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C11_666998.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C11_666998.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C11_666998.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C11_666998.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C11_666998.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C11_666998.ismpolish.data.txt'. TCGA-A8-A07S TCGA-A8-A07S-10B TCGA-A8-A07S-10B-01D-A037-01 f8a40832-25e9-4849-9ceb-2aceaabf4e73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C11_666998.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C11_666998.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C11_666998.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C11_666998.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C11_666998.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C11_666998.ismpolish.data.txt'. TCGA-A8-A07S TCGA-A8-A07S-10B TCGA-A8-A07S-10B-01D-A046-08 de7cd9e7-006d-4700-a336-4cf228e49e89 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07S TCGA-A8-A07S-10B TCGA-A8-A07S-10B-01D-A047-09 85ba6fbc-cbaf-474a-a05d-9f3b9aaaab07 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07S TCGA-A8-A07S-10B TCGA-A8-A07S-10B-01W-A053-08 6cc5f8d8-7796-4f85-893a-babd789048b7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07S TCGA-A8-A07S-10B TCGA-A8-A07S-10B-01W-A055-09 3e8e7634-4796-4ae3-b175-b746a8af6900 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07S TCGA-A8-A07S-10B TCGA-A8-A07S-10B-01X-A052-08 c86b913d-eb9e-4b7b-a877-8bbca3a193e8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07S TCGA-A8-A07S-10B TCGA-A8-A07S-10B-01X-A054-09 67ec1e86-4804-40ef-b93e-408b97e88d98 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11D-A032-05 b95e3062-41a9-45f3-b494-2aa3121b4fab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11D-A032-05 b95e3062-41a9-45f3-b494-2aa3121b4fab DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A8-A07U-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11D-A032-05 b95e3062-41a9-45f3-b494-2aa3121b4fab DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A8-A07U-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11D-A032-05 b95e3062-41a9-45f3-b494-2aa3121b4fab DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A8-A07U-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11D-A033-02 347493ec-5bea-491f-b5a2-dc585a1ef8f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11D-A036-01 b010bf66-762b-4080-9427-130a56fe2760 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11D-A036-01 b010bf66-762b-4080-9427-130a56fe2760 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G05_666906.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11D-A036-01 b010bf66-762b-4080-9427-130a56fe2760 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G05_666906.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11D-A036-01 b010bf66-762b-4080-9427-130a56fe2760 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G05_666906.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11D-A036-01 b010bf66-762b-4080-9427-130a56fe2760 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G05_666906.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11D-A036-01 b010bf66-762b-4080-9427-130a56fe2760 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G05_666906.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11D-A036-01 b010bf66-762b-4080-9427-130a56fe2760 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G05_666906.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11D-A036-01 b010bf66-762b-4080-9427-130a56fe2760 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G05_666906.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11D-A036-01 b010bf66-762b-4080-9427-130a56fe2760 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G05_666906.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11D-A044-08 3925797c-fc4a-443a-a48c-66b0a7e7b36b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11D-A045-09 27e649f7-fa79-4c1b-91b2-abd22e1052ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11R-A034-07 77daa4a6-93c2-4455-a173-ead372d92010 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11R-A034-07 77daa4a6-93c2-4455-a173-ead372d92010 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012077_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11R-A034-07 77daa4a6-93c2-4455-a173-ead372d92010 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012077_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11R-A034-07 77daa4a6-93c2-4455-a173-ead372d92010 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012077_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11R-A034-07 77daa4a6-93c2-4455-a173-ead372d92010 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_657143.TCGA-A8-A07U-01A-11R-A034-07.110302_UNC11-SN627_0066_AB047KABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11R-A034-07 77daa4a6-93c2-4455-a173-ead372d92010 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_657144.TCGA-A8-A07U-01A-11R-A034-07.110302_UNC11-SN627_0066_AB047KABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11R-A034-07 77daa4a6-93c2-4455-a173-ead372d92010 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_657355.TCGA-A8-A07U-01A-11R-A034-07.110302_UNC11-SN627_0066_AB047KABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11R-A035-13 2b3c440c-73a5-4f3d-bcac-d550f3063d66 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11R-A035-13 2b3c440c-73a5-4f3d-bcac-d550f3063d66 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07U-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11R-A035-13 2b3c440c-73a5-4f3d-bcac-d550f3063d66 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07U-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11W-A050-09 e6409415-8453-489d-a731-49257cade2a3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11W-A050-09 e6409415-8453-489d-a731-49257cade2a3 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11W-A051-08 fd71166b-78e1-4645-8201-ffed955d3e6d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11X-A048-08 fac5ef88-0b5f-4ceb-a7ef-15ea53b04ca5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07U TCGA-A8-A07U-01A TCGA-A8-A07U-01A-11X-A049-09 3ef7d0f1-23d4-406a-8877-1f479a5001fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07U TCGA-A8-A07U-10A TCGA-A8-A07U-10A-01D-A031-02 356a8b4a-0545-47a6-8209-bb173e0ef78d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07U TCGA-A8-A07U-10A TCGA-A8-A07U-10A-01D-A037-01 05afc04d-6684-47b1-b9e7-822a89570f04 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07U TCGA-A8-A07U-10A TCGA-A8-A07U-10A-01D-A037-01 05afc04d-6684-47b1-b9e7-822a89570f04 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C03_666970.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A8-A07U TCGA-A8-A07U-10A TCGA-A8-A07U-10A-01D-A037-01 05afc04d-6684-47b1-b9e7-822a89570f04 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C03_666970.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07U TCGA-A8-A07U-10A TCGA-A8-A07U-10A-01D-A037-01 05afc04d-6684-47b1-b9e7-822a89570f04 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C03_666970.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07U TCGA-A8-A07U-10A TCGA-A8-A07U-10A-01D-A037-01 05afc04d-6684-47b1-b9e7-822a89570f04 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C03_666970.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07U TCGA-A8-A07U-10A TCGA-A8-A07U-10A-01D-A037-01 05afc04d-6684-47b1-b9e7-822a89570f04 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C03_666970.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07U TCGA-A8-A07U-10A TCGA-A8-A07U-10A-01D-A037-01 05afc04d-6684-47b1-b9e7-822a89570f04 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C03_666970.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07U TCGA-A8-A07U-10A TCGA-A8-A07U-10A-01D-A037-01 05afc04d-6684-47b1-b9e7-822a89570f04 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C03_666970.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A07U TCGA-A8-A07U-10A TCGA-A8-A07U-10A-01D-A037-01 05afc04d-6684-47b1-b9e7-822a89570f04 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C03_666970.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A8-A07U TCGA-A8-A07U-10A TCGA-A8-A07U-10A-01D-A046-08 518c3444-b44a-46ed-b52e-60936a9177cc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07U TCGA-A8-A07U-10A TCGA-A8-A07U-10A-01D-A047-09 6b890db7-a60f-4326-b15f-48eca8c07e2f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07U TCGA-A8-A07U-10A TCGA-A8-A07U-10A-01W-A053-08 1e688f34-e8b1-44a4-b70d-4261a6313bc8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07U TCGA-A8-A07U-10A TCGA-A8-A07U-10A-01W-A055-09 bd1d1390-403b-4e65-9ecc-430b52d2f8af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07U TCGA-A8-A07U-10A TCGA-A8-A07U-10A-01W-A055-09 bd1d1390-403b-4e65-9ecc-430b52d2f8af Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A07U TCGA-A8-A07U-10A TCGA-A8-A07U-10A-01X-A052-08 0e74d989-d75d-4423-a2d1-ab3254882aa6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07U TCGA-A8-A07U-10A TCGA-A8-A07U-10A-01X-A054-09 a9ac3051-b0dd-42d3-b9f7-ce6e84d326a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11D-A00Y-05 1c4a4b42-75b1-4215-b07c-61929f72b30a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11D-A00Y-05 1c4a4b42-75b1-4215-b07c-61929f72b30a DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A07W-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11D-A00Y-05 1c4a4b42-75b1-4215-b07c-61929f72b30a DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A07W-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11D-A00Y-05 1c4a4b42-75b1-4215-b07c-61929f72b30a DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A07W-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11D-A011-01 3e06faf7-1e08-4c15-9aee-8891de8cad5c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11D-A011-01 3e06faf7-1e08-4c15-9aee-8891de8cad5c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F08_628214.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11D-A011-01 3e06faf7-1e08-4c15-9aee-8891de8cad5c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F08_628214.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11D-A011-01 3e06faf7-1e08-4c15-9aee-8891de8cad5c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F08_628214.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11D-A011-01 3e06faf7-1e08-4c15-9aee-8891de8cad5c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F08_628214.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11D-A011-01 3e06faf7-1e08-4c15-9aee-8891de8cad5c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F08_628214.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11D-A011-01 3e06faf7-1e08-4c15-9aee-8891de8cad5c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F08_628214.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11D-A011-01 3e06faf7-1e08-4c15-9aee-8891de8cad5c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F08_628214.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11D-A011-01 3e06faf7-1e08-4c15-9aee-8891de8cad5c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F08_628214.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11D-A015-09 c2f2c307-ed30-42bc-b584-6ef0bade63f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11D-A016-08 d76db304-ac5f-455e-aead-c9205db089e3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11D-A068-02 3a7cc025-81ee-47b8-9b73-ad1f94944999 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11R-A00Z-07 03403807-a06f-4d79-ac2d-2d494d4fabee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11R-A00Z-07 03403807-a06f-4d79-ac2d-2d494d4fabee Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012019_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11R-A00Z-07 03403807-a06f-4d79-ac2d-2d494d4fabee Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012019_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11R-A00Z-07 03403807-a06f-4d79-ac2d-2d494d4fabee Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012019_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11R-A00Z-07 03403807-a06f-4d79-ac2d-2d494d4fabee RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_660154.TCGA-A8-A07W-01A-11R-A00Z-07.110308_UNC9-SN296_0158_BB042UABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11R-A00Z-07 03403807-a06f-4d79-ac2d-2d494d4fabee RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_660160.TCGA-A8-A07W-01A-11R-A00Z-07.110308_UNC9-SN296_0158_BB042UABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11R-A00Z-07 03403807-a06f-4d79-ac2d-2d494d4fabee RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_660310.TCGA-A8-A07W-01A-11R-A00Z-07.110308_UNC9-SN296_0158_BB042UABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11R-A010-13 f86cd7ac-6830-4cdd-8c2a-a3616b6b75fe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11R-A010-13 f86cd7ac-6830-4cdd-8c2a-a3616b6b75fe miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07W-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11R-A010-13 f86cd7ac-6830-4cdd-8c2a-a3616b6b75fe miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07W-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11W-A019-09 9bc8dbab-c700-498c-8ff7-ccc62c911349 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11W-A019-09 9bc8dbab-c700-498c-8ff7-ccc62c911349 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11W-A020-08 a22fc319-b545-4916-a9c2-9dd6a17e57b8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11X-A023-09 adcf4ea1-9dd4-45b2-b031-310035b7217e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07W TCGA-A8-A07W-01A TCGA-A8-A07W-01A-11X-A024-08 e3a5bbef-22bf-41cf-a923-c46edf3edf02 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07W TCGA-A8-A07W-10A TCGA-A8-A07W-10A-01D-A012-01 74aa1eaa-8601-44d7-bbb5-8fcbd088dd7c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07W TCGA-A8-A07W-10A TCGA-A8-A07W-10A-01D-A012-01 74aa1eaa-8601-44d7-bbb5-8fcbd088dd7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F12_628358.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A07W TCGA-A8-A07W-10A TCGA-A8-A07W-10A-01D-A012-01 74aa1eaa-8601-44d7-bbb5-8fcbd088dd7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F12_628358.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07W TCGA-A8-A07W-10A TCGA-A8-A07W-10A-01D-A012-01 74aa1eaa-8601-44d7-bbb5-8fcbd088dd7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F12_628358.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07W TCGA-A8-A07W-10A TCGA-A8-A07W-10A-01D-A012-01 74aa1eaa-8601-44d7-bbb5-8fcbd088dd7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F12_628358.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07W TCGA-A8-A07W-10A TCGA-A8-A07W-10A-01D-A012-01 74aa1eaa-8601-44d7-bbb5-8fcbd088dd7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F12_628358.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07W TCGA-A8-A07W-10A TCGA-A8-A07W-10A-01D-A012-01 74aa1eaa-8601-44d7-bbb5-8fcbd088dd7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F12_628358.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07W TCGA-A8-A07W-10A TCGA-A8-A07W-10A-01D-A012-01 74aa1eaa-8601-44d7-bbb5-8fcbd088dd7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F12_628358.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07W TCGA-A8-A07W-10A TCGA-A8-A07W-10A-01D-A012-01 74aa1eaa-8601-44d7-bbb5-8fcbd088dd7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F12_628358.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A07W TCGA-A8-A07W-10A TCGA-A8-A07W-10A-01D-A017-09 98e288e0-b1e1-4dc2-b635-de4b83e26271 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07W TCGA-A8-A07W-10A TCGA-A8-A07W-10A-01D-A018-08 c964a36c-17a7-4105-9259-7b5b375a5093 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07W TCGA-A8-A07W-10A TCGA-A8-A07W-10A-01D-A069-02 1863cb84-0d82-4ae0-96cb-86fc6eb27995 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07W TCGA-A8-A07W-10A TCGA-A8-A07W-10A-01W-A021-09 efeb884c-b13d-46ba-90b0-5b23593b53f3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07W TCGA-A8-A07W-10A TCGA-A8-A07W-10A-01W-A021-09 efeb884c-b13d-46ba-90b0-5b23593b53f3 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A07W TCGA-A8-A07W-10A TCGA-A8-A07W-10A-01W-A022-08 bc114100-ef25-404b-9580-13cbe24a4710 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07W TCGA-A8-A07W-10A TCGA-A8-A07W-10A-01X-A025-09 069c874f-7696-4615-b5aa-fc44768d5f1a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07W TCGA-A8-A07W-10A TCGA-A8-A07W-10A-01X-A026-08 8705a51a-d317-464f-becc-722d9c785462 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11D-A00Y-05 b89ee41f-657e-48cb-b783-f3dd2e67b96b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11D-A00Y-05 b89ee41f-657e-48cb-b783-f3dd2e67b96b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A07Z-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11D-A00Y-05 b89ee41f-657e-48cb-b783-f3dd2e67b96b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A07Z-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11D-A00Y-05 b89ee41f-657e-48cb-b783-f3dd2e67b96b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A07Z-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11D-A011-01 5ea9f45c-2863-4516-a5a2-057ff494b14e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11D-A011-01 5ea9f45c-2863-4516-a5a2-057ff494b14e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D05_628212.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11D-A011-01 5ea9f45c-2863-4516-a5a2-057ff494b14e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D05_628212.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11D-A011-01 5ea9f45c-2863-4516-a5a2-057ff494b14e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D05_628212.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11D-A011-01 5ea9f45c-2863-4516-a5a2-057ff494b14e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D05_628212.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11D-A011-01 5ea9f45c-2863-4516-a5a2-057ff494b14e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D05_628212.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11D-A011-01 5ea9f45c-2863-4516-a5a2-057ff494b14e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D05_628212.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11D-A011-01 5ea9f45c-2863-4516-a5a2-057ff494b14e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D05_628212.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11D-A011-01 5ea9f45c-2863-4516-a5a2-057ff494b14e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D05_628212.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11D-A015-09 f7d6319a-ae1a-46cd-916e-5bfb9fe766d4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11D-A016-08 525917ea-d1e5-495b-831e-a1dfcbe32c20 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11D-A068-02 f88e3b14-dea8-4242-b8fc-9207a6d11ced Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11R-A00Z-07 a88a7f5b-09bc-43ec-ad0c-1a094d022f90 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11R-A00Z-07 a88a7f5b-09bc-43ec-ad0c-1a094d022f90 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011817_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11R-A00Z-07 a88a7f5b-09bc-43ec-ad0c-1a094d022f90 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011817_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11R-A00Z-07 a88a7f5b-09bc-43ec-ad0c-1a094d022f90 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011817_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11R-A010-13 bfc1a4f5-d340-48af-a979-ea8c38759ba5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11R-A010-13 bfc1a4f5-d340-48af-a979-ea8c38759ba5 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07Z-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11R-A010-13 bfc1a4f5-d340-48af-a979-ea8c38759ba5 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A07Z-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11W-A019-09 e4af33f9-f5fe-4e52-8ca0-991bbce2270d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11W-A019-09 e4af33f9-f5fe-4e52-8ca0-991bbce2270d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11W-A020-08 07f5580c-6cc2-48b5-91bb-6ee0de6e1764 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11X-A023-09 72b83673-1d70-4b30-bca6-cbe326d97733 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-01A TCGA-A8-A07Z-01A-11X-A024-08 583919ef-0334-41e6-b680-dd28d7250e2e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-10A TCGA-A8-A07Z-10A-01D-A012-01 e30ba9a2-c10d-47bc-9db1-e0d59b4935fe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-10A TCGA-A8-A07Z-10A-01D-A012-01 e30ba9a2-c10d-47bc-9db1-e0d59b4935fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C09_628372.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A07Z TCGA-A8-A07Z-10A TCGA-A8-A07Z-10A-01D-A012-01 e30ba9a2-c10d-47bc-9db1-e0d59b4935fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C09_628372.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-10A TCGA-A8-A07Z-10A-01D-A012-01 e30ba9a2-c10d-47bc-9db1-e0d59b4935fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C09_628372.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-10A TCGA-A8-A07Z-10A-01D-A012-01 e30ba9a2-c10d-47bc-9db1-e0d59b4935fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C09_628372.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-10A TCGA-A8-A07Z-10A-01D-A012-01 e30ba9a2-c10d-47bc-9db1-e0d59b4935fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C09_628372.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-10A TCGA-A8-A07Z-10A-01D-A012-01 e30ba9a2-c10d-47bc-9db1-e0d59b4935fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C09_628372.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-10A TCGA-A8-A07Z-10A-01D-A012-01 e30ba9a2-c10d-47bc-9db1-e0d59b4935fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C09_628372.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-10A TCGA-A8-A07Z-10A-01D-A012-01 e30ba9a2-c10d-47bc-9db1-e0d59b4935fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C09_628372.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-10A TCGA-A8-A07Z-10A-01D-A017-09 a0527598-4d28-489e-bd64-1c3e1b7aea48 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-10A TCGA-A8-A07Z-10A-01D-A018-08 99f101af-398b-426d-a5c9-dcee486e4525 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-10A TCGA-A8-A07Z-10A-01D-A069-02 ff435c2b-4c9f-4451-96be-27281ab5fd99 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-10A TCGA-A8-A07Z-10A-01W-A021-09 a9ac6ea6-e114-4fac-8372-86cb23c835ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-10A TCGA-A8-A07Z-10A-01W-A021-09 a9ac6ea6-e114-4fac-8372-86cb23c835ec Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-10A TCGA-A8-A07Z-10A-01W-A022-08 63d60f09-8fc6-4c62-9ed9-2afe5211c452 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-10A TCGA-A8-A07Z-10A-01X-A025-09 6e969511-c981-4dc0-99bd-343a8bdd918d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A07Z TCGA-A8-A07Z-10A TCGA-A8-A07Z-10A-01X-A026-08 94162830-7a57-46d1-911b-73ee39ee9668 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A07Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11D-A00Y-05 b2c862bb-4c39-4cfe-bfe2-bf5f25815f10 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A081.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11D-A00Y-05 b2c862bb-4c39-4cfe-bfe2-bf5f25815f10 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A081-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11D-A00Y-05 b2c862bb-4c39-4cfe-bfe2-bf5f25815f10 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A081-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11D-A00Y-05 b2c862bb-4c39-4cfe-bfe2-bf5f25815f10 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A081-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11D-A011-01 fe041229-97be-4bac-9294-04b42df07890 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A081.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11D-A011-01 fe041229-97be-4bac-9294-04b42df07890 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A09_628388.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11D-A011-01 fe041229-97be-4bac-9294-04b42df07890 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A09_628388.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11D-A011-01 fe041229-97be-4bac-9294-04b42df07890 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A09_628388.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11D-A011-01 fe041229-97be-4bac-9294-04b42df07890 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A09_628388.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11D-A011-01 fe041229-97be-4bac-9294-04b42df07890 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A09_628388.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11D-A011-01 fe041229-97be-4bac-9294-04b42df07890 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A09_628388.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11D-A011-01 fe041229-97be-4bac-9294-04b42df07890 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A09_628388.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11D-A011-01 fe041229-97be-4bac-9294-04b42df07890 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A09_628388.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11D-A015-09 d4968a8b-ac08-4a8e-a0cc-87374ae71ab6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A081.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11D-A016-08 9f81e62f-1f16-4a9a-9400-b6e7ac5abe4f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A081.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11D-A068-02 7633e256-4ff0-4414-a40d-cccaa319c9ad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A081.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11R-A00Z-07 c88b614b-811e-42f9-86e3-10909ced98e7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A081.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11R-A00Z-07 c88b614b-811e-42f9-86e3-10909ced98e7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011808_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11R-A00Z-07 c88b614b-811e-42f9-86e3-10909ced98e7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011808_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11R-A00Z-07 c88b614b-811e-42f9-86e3-10909ced98e7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011808_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11R-A00Z-07 c88b614b-811e-42f9-86e3-10909ced98e7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593762.TCGA-A8-A081-01A-11R-A00Z-07.110222_SN627_0062_A81FPKABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11R-A00Z-07 c88b614b-811e-42f9-86e3-10909ced98e7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593791.TCGA-A8-A081-01A-11R-A00Z-07.110222_SN627_0062_A81FPKABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11R-A00Z-07 c88b614b-811e-42f9-86e3-10909ced98e7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593994.TCGA-A8-A081-01A-11R-A00Z-07.110222_SN627_0062_A81FPKABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11R-A010-13 0cdee37e-2c1c-4b3d-ab8d-020ae863ae15 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A081.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11R-A010-13 0cdee37e-2c1c-4b3d-ab8d-020ae863ae15 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A081-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11R-A010-13 0cdee37e-2c1c-4b3d-ab8d-020ae863ae15 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A081-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11W-A019-09 d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A081.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11W-A019-09 d29c3a5b-aab5-4d1b-bdaf-eb6fa405bc80 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11W-A020-08 5f89bedd-eef3-4ad4-9c97-92753047f890 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A081.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11X-A023-09 3acc1b54-19aa-4f4d-a105-9fff4eb55492 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A081.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A081 TCGA-A8-A081-01A TCGA-A8-A081-01A-11X-A024-08 9e972429-ba44-4f71-8c15-0e6bbbd8c383 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A081.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A081 TCGA-A8-A081-10A TCGA-A8-A081-10A-01D-A012-01 6a46737f-88e7-4cbd-b204-88c98f9b7310 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A081.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A081 TCGA-A8-A081-10A TCGA-A8-A081-10A-01D-A012-01 6a46737f-88e7-4cbd-b204-88c98f9b7310 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F05_628300.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A081 TCGA-A8-A081-10A TCGA-A8-A081-10A-01D-A012-01 6a46737f-88e7-4cbd-b204-88c98f9b7310 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F05_628300.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A081 TCGA-A8-A081-10A TCGA-A8-A081-10A-01D-A012-01 6a46737f-88e7-4cbd-b204-88c98f9b7310 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F05_628300.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A081 TCGA-A8-A081-10A TCGA-A8-A081-10A-01D-A012-01 6a46737f-88e7-4cbd-b204-88c98f9b7310 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F05_628300.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A081 TCGA-A8-A081-10A TCGA-A8-A081-10A-01D-A012-01 6a46737f-88e7-4cbd-b204-88c98f9b7310 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F05_628300.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A081 TCGA-A8-A081-10A TCGA-A8-A081-10A-01D-A012-01 6a46737f-88e7-4cbd-b204-88c98f9b7310 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F05_628300.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A081 TCGA-A8-A081-10A TCGA-A8-A081-10A-01D-A012-01 6a46737f-88e7-4cbd-b204-88c98f9b7310 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F05_628300.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A081 TCGA-A8-A081-10A TCGA-A8-A081-10A-01D-A012-01 6a46737f-88e7-4cbd-b204-88c98f9b7310 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F05_628300.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A081 TCGA-A8-A081-10A TCGA-A8-A081-10A-01D-A017-09 0147d2d5-b6ce-4411-8f4d-f91f26d7c157 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A081.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A081 TCGA-A8-A081-10A TCGA-A8-A081-10A-01D-A018-08 4e76ca24-81ed-48f8-84e7-373dad6050ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A081.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A081 TCGA-A8-A081-10A TCGA-A8-A081-10A-01D-A069-02 fea6339e-1e65-489b-ae57-c412ef0ed804 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A081.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A081 TCGA-A8-A081-10A TCGA-A8-A081-10A-01W-A021-09 a28d918c-2d16-49c9-a5f8-0cf66224f940 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A081.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A081 TCGA-A8-A081-10A TCGA-A8-A081-10A-01W-A021-09 a28d918c-2d16-49c9-a5f8-0cf66224f940 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A081 TCGA-A8-A081-10A TCGA-A8-A081-10A-01W-A022-08 f1a132a2-e5a7-469a-93ae-25b400f7a2f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A081.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A081 TCGA-A8-A081-10A TCGA-A8-A081-10A-01X-A025-09 0172e4c7-e2d6-4995-abbf-03f31f54a54b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A081.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A081 TCGA-A8-A081-10A TCGA-A8-A081-10A-01X-A026-08 570f875c-f824-4e2d-adcd-e9f6ed8c3899 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A081.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11D-A00Y-05 0c7c779f-47ee-4c36-a5ee-8b1a0f11f393 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A082.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11D-A00Y-05 0c7c779f-47ee-4c36-a5ee-8b1a0f11f393 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A082-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11D-A00Y-05 0c7c779f-47ee-4c36-a5ee-8b1a0f11f393 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A082-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11D-A00Y-05 0c7c779f-47ee-4c36-a5ee-8b1a0f11f393 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A082-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11D-A011-01 4b289590-8f98-4153-a0e8-1d59e7d3260c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A082.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11D-A011-01 4b289590-8f98-4153-a0e8-1d59e7d3260c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D01_628356.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11D-A011-01 4b289590-8f98-4153-a0e8-1d59e7d3260c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D01_628356.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11D-A011-01 4b289590-8f98-4153-a0e8-1d59e7d3260c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D01_628356.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11D-A011-01 4b289590-8f98-4153-a0e8-1d59e7d3260c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D01_628356.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11D-A011-01 4b289590-8f98-4153-a0e8-1d59e7d3260c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D01_628356.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11D-A011-01 4b289590-8f98-4153-a0e8-1d59e7d3260c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D01_628356.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11D-A011-01 4b289590-8f98-4153-a0e8-1d59e7d3260c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D01_628356.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11D-A011-01 4b289590-8f98-4153-a0e8-1d59e7d3260c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D01_628356.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11D-A015-09 c3311a4c-1402-417a-8df5-9f9383e5ae94 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A082.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11D-A016-08 2f7d438e-a2b5-4395-bb92-bac7a9be53b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A082.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11D-A068-02 53e4f757-bb42-4ce6-a12c-4d63a7c3b415 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A082.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11R-A00Z-07 2fd81438-46a2-42f5-910e-728faea3872a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A082.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11R-A00Z-07 2fd81438-46a2-42f5-910e-728faea3872a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011832_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11R-A00Z-07 2fd81438-46a2-42f5-910e-728faea3872a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011832_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11R-A00Z-07 2fd81438-46a2-42f5-910e-728faea3872a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011832_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11R-A00Z-07 2fd81438-46a2-42f5-910e-728faea3872a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_608529.TCGA-A8-A082-01A-11R-A00Z-07.110225_SN254_0195_A81LH6ABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11R-A00Z-07 2fd81438-46a2-42f5-910e-728faea3872a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_608535.TCGA-A8-A082-01A-11R-A00Z-07.110225_SN254_0195_A81LH6ABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11R-A00Z-07 2fd81438-46a2-42f5-910e-728faea3872a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_608601.TCGA-A8-A082-01A-11R-A00Z-07.110225_SN254_0195_A81LH6ABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11R-A010-13 953b33fe-b95c-4aa2-ad69-606bec60e21f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A082.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11R-A010-13 953b33fe-b95c-4aa2-ad69-606bec60e21f miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A082-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11R-A010-13 953b33fe-b95c-4aa2-ad69-606bec60e21f miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A082-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11W-A019-09 575d25ea-eae7-423a-9464-d3b2806bf9eb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A082.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11W-A019-09 575d25ea-eae7-423a-9464-d3b2806bf9eb Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11W-A020-08 cb9cb59a-8c18-4b63-ac41-b5d580b3d423 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A082.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11X-A023-09 cf520b50-5c66-48d0-9acb-a17b0eb0b36a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A082.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A082 TCGA-A8-A082-01A TCGA-A8-A082-01A-11X-A024-08 e5df4d90-f971-49f6-a60e-421dbff4ab45 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A082.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A082 TCGA-A8-A082-10A TCGA-A8-A082-10A-01D-A012-01 611891b1-8990-47a2-8c96-2f0b6e86a0e8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A082.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A082 TCGA-A8-A082-10A TCGA-A8-A082-10A-01D-A012-01 611891b1-8990-47a2-8c96-2f0b6e86a0e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B06_628276.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A082 TCGA-A8-A082-10A TCGA-A8-A082-10A-01D-A012-01 611891b1-8990-47a2-8c96-2f0b6e86a0e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B06_628276.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A082 TCGA-A8-A082-10A TCGA-A8-A082-10A-01D-A012-01 611891b1-8990-47a2-8c96-2f0b6e86a0e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B06_628276.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A082 TCGA-A8-A082-10A TCGA-A8-A082-10A-01D-A012-01 611891b1-8990-47a2-8c96-2f0b6e86a0e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B06_628276.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A082 TCGA-A8-A082-10A TCGA-A8-A082-10A-01D-A012-01 611891b1-8990-47a2-8c96-2f0b6e86a0e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B06_628276.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A082 TCGA-A8-A082-10A TCGA-A8-A082-10A-01D-A012-01 611891b1-8990-47a2-8c96-2f0b6e86a0e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B06_628276.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A082 TCGA-A8-A082-10A TCGA-A8-A082-10A-01D-A012-01 611891b1-8990-47a2-8c96-2f0b6e86a0e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B06_628276.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A082 TCGA-A8-A082-10A TCGA-A8-A082-10A-01D-A012-01 611891b1-8990-47a2-8c96-2f0b6e86a0e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B06_628276.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A082 TCGA-A8-A082-10A TCGA-A8-A082-10A-01D-A017-09 43a10b8a-de10-449c-b404-455c1f6d7b97 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A082.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A082 TCGA-A8-A082-10A TCGA-A8-A082-10A-01D-A018-08 ed4fa59f-8a94-498e-a8e1-4b9e0eae1554 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A082.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A082 TCGA-A8-A082-10A TCGA-A8-A082-10A-01D-A069-02 21b14798-0480-4404-b9cf-9569f3d465d9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A082.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A082 TCGA-A8-A082-10A TCGA-A8-A082-10A-01W-A021-09 576b6dc6-351b-4a61-b6e4-fbfda702de27 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A082.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A082 TCGA-A8-A082-10A TCGA-A8-A082-10A-01W-A021-09 576b6dc6-351b-4a61-b6e4-fbfda702de27 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A082 TCGA-A8-A082-10A TCGA-A8-A082-10A-01W-A022-08 5370bf61-21ef-41a4-9197-fd97d73a4df0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A082.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A082 TCGA-A8-A082-10A TCGA-A8-A082-10A-01X-A025-09 b71cb593-5e45-455c-af29-a072513b2819 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A082.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A082 TCGA-A8-A082-10A TCGA-A8-A082-10A-01X-A026-08 1809a2c8-cfad-4c59-8d48-d76c755eb62d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A082.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21D-A00Y-05 69fdb807-99a3-4cae-8ad7-6d7b7e2ed96f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A083.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21D-A00Y-05 69fdb807-99a3-4cae-8ad7-6d7b7e2ed96f DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A083-01A-21D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21D-A00Y-05 69fdb807-99a3-4cae-8ad7-6d7b7e2ed96f DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A083-01A-21D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21D-A00Y-05 69fdb807-99a3-4cae-8ad7-6d7b7e2ed96f DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A083-01A-21D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21D-A011-01 0d197013-8a77-4839-a2ad-bc70650613eb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A083.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21D-A011-01 0d197013-8a77-4839-a2ad-bc70650613eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C07_628348.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21D-A011-01 0d197013-8a77-4839-a2ad-bc70650613eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C07_628348.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21D-A011-01 0d197013-8a77-4839-a2ad-bc70650613eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C07_628348.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21D-A011-01 0d197013-8a77-4839-a2ad-bc70650613eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C07_628348.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21D-A011-01 0d197013-8a77-4839-a2ad-bc70650613eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C07_628348.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21D-A011-01 0d197013-8a77-4839-a2ad-bc70650613eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C07_628348.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21D-A011-01 0d197013-8a77-4839-a2ad-bc70650613eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C07_628348.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21D-A011-01 0d197013-8a77-4839-a2ad-bc70650613eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C07_628348.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21D-A015-09 e11fd871-f6a4-4fd5-808f-b58c895ef198 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A083.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21D-A016-08 c9f78377-351f-4349-af10-749cf7e6b0b4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A083.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21D-A068-02 5b6c8685-044e-41ff-afc0-53b01209edef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A083.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21R-A00Z-07 72b7ab0e-81e0-4385-8125-5146243e21ac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A083.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21R-A00Z-07 72b7ab0e-81e0-4385-8125-5146243e21ac Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011850_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21R-A00Z-07 72b7ab0e-81e0-4385-8125-5146243e21ac Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011850_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21R-A00Z-07 72b7ab0e-81e0-4385-8125-5146243e21ac Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011850_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21R-A010-13 8b39cc65-04d6-4735-ae8a-64e89b3c353c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A083.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21R-A010-13 8b39cc65-04d6-4735-ae8a-64e89b3c353c miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A083-01A-21R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21R-A010-13 8b39cc65-04d6-4735-ae8a-64e89b3c353c miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A083-01A-21R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21W-A019-09 1904e458-1a6c-4e91-88cc-10ee154ded5b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A083.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21W-A019-09 1904e458-1a6c-4e91-88cc-10ee154ded5b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21W-A020-08 185d1ec3-afe6-42d5-9ae6-6c8cfeea7e2e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A083.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21X-A023-09 3bba9af9-59f6-4a63-b2f6-14ec6eb24073 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A083.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A083 TCGA-A8-A083-01A TCGA-A8-A083-01A-21X-A024-08 239f50c0-1413-4b03-b057-7c0a461950c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A083.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A083 TCGA-A8-A083-10A TCGA-A8-A083-10A-01D-A012-01 ea2d302c-e330-44ba-b391-a9e8cd829fe0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A083.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A083 TCGA-A8-A083-10A TCGA-A8-A083-10A-01D-A012-01 ea2d302c-e330-44ba-b391-a9e8cd829fe0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E05_628320.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A083 TCGA-A8-A083-10A TCGA-A8-A083-10A-01D-A012-01 ea2d302c-e330-44ba-b391-a9e8cd829fe0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E05_628320.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A083 TCGA-A8-A083-10A TCGA-A8-A083-10A-01D-A012-01 ea2d302c-e330-44ba-b391-a9e8cd829fe0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E05_628320.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A083 TCGA-A8-A083-10A TCGA-A8-A083-10A-01D-A012-01 ea2d302c-e330-44ba-b391-a9e8cd829fe0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E05_628320.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A083 TCGA-A8-A083-10A TCGA-A8-A083-10A-01D-A012-01 ea2d302c-e330-44ba-b391-a9e8cd829fe0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E05_628320.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A083 TCGA-A8-A083-10A TCGA-A8-A083-10A-01D-A012-01 ea2d302c-e330-44ba-b391-a9e8cd829fe0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E05_628320.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A083 TCGA-A8-A083-10A TCGA-A8-A083-10A-01D-A012-01 ea2d302c-e330-44ba-b391-a9e8cd829fe0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E05_628320.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A083 TCGA-A8-A083-10A TCGA-A8-A083-10A-01D-A012-01 ea2d302c-e330-44ba-b391-a9e8cd829fe0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E05_628320.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A083 TCGA-A8-A083-10A TCGA-A8-A083-10A-01D-A017-09 d8eef71b-b3f3-48cb-a465-bef9d16ef34a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A083.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A083 TCGA-A8-A083-10A TCGA-A8-A083-10A-01D-A018-08 83b9ce80-0baa-45c4-963a-1652041ce82a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A083.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A083 TCGA-A8-A083-10A TCGA-A8-A083-10A-01D-A069-02 39b5bd2a-a8be-40e2-8192-bacbcd5fc9c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A083.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A083 TCGA-A8-A083-10A TCGA-A8-A083-10A-01W-A021-09 a3d7f86d-e67c-4588-9a94-f6c98ed06faa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A083.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A083 TCGA-A8-A083-10A TCGA-A8-A083-10A-01W-A021-09 a3d7f86d-e67c-4588-9a94-f6c98ed06faa Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A083 TCGA-A8-A083-10A TCGA-A8-A083-10A-01W-A022-08 fd2a4afa-c4c5-4f45-a144-265aa5e951c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A083.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A083 TCGA-A8-A083-10A TCGA-A8-A083-10A-01X-A025-09 15e97f80-9b54-49e0-9390-d3bd899f54ea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A083.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A083 TCGA-A8-A083-10A TCGA-A8-A083-10A-01X-A026-08 6b44bc14-97cd-4def-90d6-744b18aaabda Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A083.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21D-A00Y-05 08903c0a-f12d-4476-8d63-e8994d140c50 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A084.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21D-A00Y-05 08903c0a-f12d-4476-8d63-e8994d140c50 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A084-01A-21D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21D-A00Y-05 08903c0a-f12d-4476-8d63-e8994d140c50 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A084-01A-21D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21D-A00Y-05 08903c0a-f12d-4476-8d63-e8994d140c50 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A084-01A-21D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21D-A011-01 5b2d8ac0-cdb6-486f-bbad-3555c216ab0a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A084.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21D-A011-01 5b2d8ac0-cdb6-486f-bbad-3555c216ab0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E07_628396.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21D-A011-01 5b2d8ac0-cdb6-486f-bbad-3555c216ab0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E07_628396.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21D-A011-01 5b2d8ac0-cdb6-486f-bbad-3555c216ab0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E07_628396.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21D-A011-01 5b2d8ac0-cdb6-486f-bbad-3555c216ab0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E07_628396.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21D-A011-01 5b2d8ac0-cdb6-486f-bbad-3555c216ab0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E07_628396.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21D-A011-01 5b2d8ac0-cdb6-486f-bbad-3555c216ab0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E07_628396.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21D-A011-01 5b2d8ac0-cdb6-486f-bbad-3555c216ab0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E07_628396.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21D-A011-01 5b2d8ac0-cdb6-486f-bbad-3555c216ab0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E07_628396.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21D-A015-09 d872fd01-e639-4a01-96d2-90d0f7c0db24 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A084.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21D-A016-08 f3cdb473-bdd9-4c3d-81dc-132caef8f3c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A084.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21D-A068-02 2feebbf6-82fc-4c0e-bd51-690e5c194d16 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A084.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21R-A00Z-07 2f2fe990-f8f6-4904-b3d5-083e17a7a29d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A084.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21R-A00Z-07 2f2fe990-f8f6-4904-b3d5-083e17a7a29d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011861_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21R-A00Z-07 2f2fe990-f8f6-4904-b3d5-083e17a7a29d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011861_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21R-A00Z-07 2f2fe990-f8f6-4904-b3d5-083e17a7a29d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011861_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21R-A010-13 c634f531-f588-44a2-8add-5ab0867ef4ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A084.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21R-A010-13 c634f531-f588-44a2-8add-5ab0867ef4ef miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A084-01A-21R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21R-A010-13 c634f531-f588-44a2-8add-5ab0867ef4ef miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A084-01A-21R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21W-A019-09 6f6f7048-5b7a-4827-af2b-cfecc4a60025 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A084.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21W-A019-09 6f6f7048-5b7a-4827-af2b-cfecc4a60025 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21W-A020-08 0db2c3d7-cf0f-48e6-afbc-2c5c7d9974da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A084.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21X-A023-09 c67dce3b-9b4e-4acd-ac27-82050ad3bc93 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A084.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-01A TCGA-A8-A084-01A-21X-A024-08 5b0a53a9-141b-425b-ad52-6c122d1633c5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A084.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-10A TCGA-A8-A084-10A-01D-A012-01 6ce8d742-430f-4da0-8b29-dcd6063754cd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A084.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-10A TCGA-A8-A084-10A-01D-A012-01 6ce8d742-430f-4da0-8b29-dcd6063754cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E09_628296.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-10A TCGA-A8-A084-10A-01D-A012-01 6ce8d742-430f-4da0-8b29-dcd6063754cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E09_628296.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-10A TCGA-A8-A084-10A-01D-A012-01 6ce8d742-430f-4da0-8b29-dcd6063754cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E09_628296.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-10A TCGA-A8-A084-10A-01D-A012-01 6ce8d742-430f-4da0-8b29-dcd6063754cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E09_628296.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-10A TCGA-A8-A084-10A-01D-A012-01 6ce8d742-430f-4da0-8b29-dcd6063754cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E09_628296.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-10A TCGA-A8-A084-10A-01D-A012-01 6ce8d742-430f-4da0-8b29-dcd6063754cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E09_628296.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-10A TCGA-A8-A084-10A-01D-A012-01 6ce8d742-430f-4da0-8b29-dcd6063754cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E09_628296.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-10A TCGA-A8-A084-10A-01D-A012-01 6ce8d742-430f-4da0-8b29-dcd6063754cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E09_628296.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-10A TCGA-A8-A084-10A-01D-A017-09 1bc804a3-96ec-48f6-b3d7-a40023cf5e33 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A084.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-10A TCGA-A8-A084-10A-01D-A018-08 19678177-4921-483f-988c-b72ca38c46f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A084.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-10A TCGA-A8-A084-10A-01D-A069-02 799f5839-e0d5-4ab2-bef5-cee039edb2d7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A084.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-10A TCGA-A8-A084-10A-01W-A021-09 23dc2b83-850f-4ae8-9e10-d7263ef23617 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A084.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-10A TCGA-A8-A084-10A-01W-A021-09 23dc2b83-850f-4ae8-9e10-d7263ef23617 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-10A TCGA-A8-A084-10A-01W-A022-08 a242c0a1-8f93-4102-8e05-6d9fde4ddcb3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A084.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-10A TCGA-A8-A084-10A-01X-A025-09 85b2f6b0-44db-464c-9b29-d21956566160 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A084.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A084 TCGA-A8-A084-10A TCGA-A8-A084-10A-01X-A026-08 2c5eb194-85f3-46fa-b7b4-d86749cbb557 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A084.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11D-A00Y-05 a909e803-4131-431c-b5b0-bc4687ea2142 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A085.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11D-A00Y-05 a909e803-4131-431c-b5b0-bc4687ea2142 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A085-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11D-A00Y-05 a909e803-4131-431c-b5b0-bc4687ea2142 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A085-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11D-A00Y-05 a909e803-4131-431c-b5b0-bc4687ea2142 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A085-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11D-A011-01 03b447b0-d92c-4d78-a496-fcf20be55ce5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A085.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11D-A011-01 03b447b0-d92c-4d78-a496-fcf20be55ce5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H04_628310.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11D-A011-01 03b447b0-d92c-4d78-a496-fcf20be55ce5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H04_628310.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11D-A011-01 03b447b0-d92c-4d78-a496-fcf20be55ce5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H04_628310.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11D-A011-01 03b447b0-d92c-4d78-a496-fcf20be55ce5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H04_628310.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11D-A011-01 03b447b0-d92c-4d78-a496-fcf20be55ce5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H04_628310.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11D-A011-01 03b447b0-d92c-4d78-a496-fcf20be55ce5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H04_628310.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11D-A011-01 03b447b0-d92c-4d78-a496-fcf20be55ce5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H04_628310.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11D-A011-01 03b447b0-d92c-4d78-a496-fcf20be55ce5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H04_628310.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11D-A015-09 3c376042-103f-4a7c-8966-a0711c8ed8b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A085.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11D-A016-08 35622be4-9da3-4970-82ab-905d94d22d7e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A085.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11D-A068-02 4b69e29b-a525-413f-a78c-7b0d4e84bb66 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A085.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11R-A00Z-07 4be8001c-c6a2-420c-8761-93469a6a7904 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A085.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11R-A00Z-07 4be8001c-c6a2-420c-8761-93469a6a7904 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011876_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11R-A00Z-07 4be8001c-c6a2-420c-8761-93469a6a7904 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011876_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11R-A00Z-07 4be8001c-c6a2-420c-8761-93469a6a7904 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011876_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11R-A00Z-07 4be8001c-c6a2-420c-8761-93469a6a7904 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_602089.TCGA-A8-A085-01A-11R-A00Z-07.111011_UNC12-SN629_0149_AB062VABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11R-A00Z-07 4be8001c-c6a2-420c-8761-93469a6a7904 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_602260.TCGA-A8-A085-01A-11R-A00Z-07.111011_UNC12-SN629_0149_AB062VABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11R-A00Z-07 4be8001c-c6a2-420c-8761-93469a6a7904 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_602307.TCGA-A8-A085-01A-11R-A00Z-07.111011_UNC12-SN629_0149_AB062VABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11R-A010-13 b0d33625-d4db-4fe5-81a1-315f50a5f3a5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A085.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11R-A010-13 b0d33625-d4db-4fe5-81a1-315f50a5f3a5 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A085-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11R-A010-13 b0d33625-d4db-4fe5-81a1-315f50a5f3a5 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A085-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11W-A019-09 cbdea951-3dc9-42c2-bfdd-3796c30e928e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A085.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11W-A019-09 cbdea951-3dc9-42c2-bfdd-3796c30e928e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11W-A020-08 96905124-67a3-4e63-b5dd-90c81fd96ae4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A085.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11X-A023-09 52268429-8fee-4d2d-ab41-66779eb69f84 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A085.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A085 TCGA-A8-A085-01A TCGA-A8-A085-01A-11X-A024-08 f3092df8-dfc1-40c2-9607-8f9817d2ef6e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A085.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A085 TCGA-A8-A085-10A TCGA-A8-A085-10A-01D-A012-01 b5c840a2-6e29-4c1f-9289-d08fd0a2e141 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A085.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A085 TCGA-A8-A085-10A TCGA-A8-A085-10A-01D-A012-01 b5c840a2-6e29-4c1f-9289-d08fd0a2e141 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H02_628288.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A085 TCGA-A8-A085-10A TCGA-A8-A085-10A-01D-A012-01 b5c840a2-6e29-4c1f-9289-d08fd0a2e141 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H02_628288.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A085 TCGA-A8-A085-10A TCGA-A8-A085-10A-01D-A012-01 b5c840a2-6e29-4c1f-9289-d08fd0a2e141 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H02_628288.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A085 TCGA-A8-A085-10A TCGA-A8-A085-10A-01D-A012-01 b5c840a2-6e29-4c1f-9289-d08fd0a2e141 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H02_628288.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A085 TCGA-A8-A085-10A TCGA-A8-A085-10A-01D-A012-01 b5c840a2-6e29-4c1f-9289-d08fd0a2e141 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H02_628288.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A085 TCGA-A8-A085-10A TCGA-A8-A085-10A-01D-A012-01 b5c840a2-6e29-4c1f-9289-d08fd0a2e141 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H02_628288.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A085 TCGA-A8-A085-10A TCGA-A8-A085-10A-01D-A012-01 b5c840a2-6e29-4c1f-9289-d08fd0a2e141 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H02_628288.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A085 TCGA-A8-A085-10A TCGA-A8-A085-10A-01D-A012-01 b5c840a2-6e29-4c1f-9289-d08fd0a2e141 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H02_628288.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A085 TCGA-A8-A085-10A TCGA-A8-A085-10A-01D-A017-09 e7826c1e-0155-4c85-bf7a-9aa492035214 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A085.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A085 TCGA-A8-A085-10A TCGA-A8-A085-10A-01D-A018-08 20c49a32-1ba5-4e9e-b2e0-597b781ad795 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A085.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A085 TCGA-A8-A085-10A TCGA-A8-A085-10A-01D-A069-02 1ff11623-8dde-4ddd-9969-2c42cb79f6d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A085.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A085 TCGA-A8-A085-10A TCGA-A8-A085-10A-01W-A021-09 69ab5cb1-eaab-4fc0-a45e-85e9fad03b28 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A085.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A085 TCGA-A8-A085-10A TCGA-A8-A085-10A-01W-A021-09 69ab5cb1-eaab-4fc0-a45e-85e9fad03b28 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A085 TCGA-A8-A085-10A TCGA-A8-A085-10A-01W-A022-08 7bff37b1-c322-4f99-b888-a59ac455ac1e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A085.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A085 TCGA-A8-A085-10A TCGA-A8-A085-10A-01X-A025-09 8aa1bb21-a5ef-4fbe-bdbf-079548ab2067 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A085.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A085 TCGA-A8-A085-10A TCGA-A8-A085-10A-01X-A026-08 590b520d-44d3-4e3d-9211-8b1e8e455736 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A085.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11D-A00Y-05 5e2aadae-5e31-4abe-b8ff-a21ef0a602e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A086.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11D-A00Y-05 5e2aadae-5e31-4abe-b8ff-a21ef0a602e4 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A086-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11D-A00Y-05 5e2aadae-5e31-4abe-b8ff-a21ef0a602e4 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A086-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11D-A00Y-05 5e2aadae-5e31-4abe-b8ff-a21ef0a602e4 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A086-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11D-A011-01 064b8a58-45eb-4abe-8627-5b4a8c69e6c7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A086.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11D-A011-01 064b8a58-45eb-4abe-8627-5b4a8c69e6c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G06_628282.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11D-A011-01 064b8a58-45eb-4abe-8627-5b4a8c69e6c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G06_628282.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11D-A011-01 064b8a58-45eb-4abe-8627-5b4a8c69e6c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G06_628282.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11D-A011-01 064b8a58-45eb-4abe-8627-5b4a8c69e6c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G06_628282.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11D-A011-01 064b8a58-45eb-4abe-8627-5b4a8c69e6c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G06_628282.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11D-A011-01 064b8a58-45eb-4abe-8627-5b4a8c69e6c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G06_628282.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11D-A011-01 064b8a58-45eb-4abe-8627-5b4a8c69e6c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G06_628282.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11D-A011-01 064b8a58-45eb-4abe-8627-5b4a8c69e6c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G06_628282.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11D-A015-09 ff875f17-b7f9-459b-a087-cdc5b618b34d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A086.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11D-A016-08 54a15bd8-57e5-4a32-9e8b-f773b44484b3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A086.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11D-A068-02 b5e2d2e8-a8fc-4489-a606-b197bc5f957d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A086.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11R-A00Z-07 7347a336-6248-47be-817b-88543164d564 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A086.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11R-A00Z-07 7347a336-6248-47be-817b-88543164d564 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011888_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11R-A00Z-07 7347a336-6248-47be-817b-88543164d564 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011888_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11R-A00Z-07 7347a336-6248-47be-817b-88543164d564 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011888_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11R-A00Z-07 7347a336-6248-47be-817b-88543164d564 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_608180.TCGA-A8-A086-01A-11R-A00Z-07.110228_UNC10-SN254_0198_BB041RABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11R-A00Z-07 7347a336-6248-47be-817b-88543164d564 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_608193.TCGA-A8-A086-01A-11R-A00Z-07.110228_UNC10-SN254_0198_BB041RABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11R-A00Z-07 7347a336-6248-47be-817b-88543164d564 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_608355.TCGA-A8-A086-01A-11R-A00Z-07.110228_UNC10-SN254_0198_BB041RABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11R-A010-13 523d3f96-0dc4-4f28-8ead-a77cdd19e05a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A086.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11R-A010-13 523d3f96-0dc4-4f28-8ead-a77cdd19e05a miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A086-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11R-A010-13 523d3f96-0dc4-4f28-8ead-a77cdd19e05a miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A086-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11W-A019-09 13d89926-9e4c-434f-80b4-4fb15e4426f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A086.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11W-A019-09 13d89926-9e4c-434f-80b4-4fb15e4426f6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11W-A020-08 23532393-059f-4602-b58d-1b6c915c37f0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A086.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11X-A023-09 82143a8b-0958-414f-91dc-25093c9e2f46 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A086.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A086 TCGA-A8-A086-01A TCGA-A8-A086-01A-11X-A024-08 7f23cd28-cb10-42b3-87bd-4a87005a9244 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A086.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A086 TCGA-A8-A086-10A TCGA-A8-A086-10A-01D-A012-01 dd455d0e-2512-48d2-8aaa-fdead0a15ee0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A086.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A086 TCGA-A8-A086-10A TCGA-A8-A086-10A-01D-A012-01 dd455d0e-2512-48d2-8aaa-fdead0a15ee0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G08_628354.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A086 TCGA-A8-A086-10A TCGA-A8-A086-10A-01D-A012-01 dd455d0e-2512-48d2-8aaa-fdead0a15ee0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G08_628354.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A086 TCGA-A8-A086-10A TCGA-A8-A086-10A-01D-A012-01 dd455d0e-2512-48d2-8aaa-fdead0a15ee0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G08_628354.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A086 TCGA-A8-A086-10A TCGA-A8-A086-10A-01D-A012-01 dd455d0e-2512-48d2-8aaa-fdead0a15ee0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G08_628354.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A086 TCGA-A8-A086-10A TCGA-A8-A086-10A-01D-A012-01 dd455d0e-2512-48d2-8aaa-fdead0a15ee0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G08_628354.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A086 TCGA-A8-A086-10A TCGA-A8-A086-10A-01D-A012-01 dd455d0e-2512-48d2-8aaa-fdead0a15ee0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G08_628354.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A086 TCGA-A8-A086-10A TCGA-A8-A086-10A-01D-A012-01 dd455d0e-2512-48d2-8aaa-fdead0a15ee0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G08_628354.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A086 TCGA-A8-A086-10A TCGA-A8-A086-10A-01D-A012-01 dd455d0e-2512-48d2-8aaa-fdead0a15ee0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G08_628354.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A086 TCGA-A8-A086-10A TCGA-A8-A086-10A-01D-A017-09 be7b02b0-b650-4530-be53-fe83b65f1adb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A086.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A086 TCGA-A8-A086-10A TCGA-A8-A086-10A-01D-A018-08 b7812e71-1f76-46f2-895c-3ca91e3b68c2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A086.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A086 TCGA-A8-A086-10A TCGA-A8-A086-10A-01D-A069-02 63137dcf-0e2e-42a3-aeca-a551326d28ac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A086.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A086 TCGA-A8-A086-10A TCGA-A8-A086-10A-01W-A021-09 1af700be-a789-4f68-bd75-290aeed2fd7b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A086.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A086 TCGA-A8-A086-10A TCGA-A8-A086-10A-01W-A021-09 1af700be-a789-4f68-bd75-290aeed2fd7b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A086 TCGA-A8-A086-10A TCGA-A8-A086-10A-01W-A022-08 534220b1-cf25-4132-9275-f4fcb70b2bbc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A086.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A086 TCGA-A8-A086-10A TCGA-A8-A086-10A-01X-A025-09 cc6dac26-6a14-4d43-b883-84c8a5924b13 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A086.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A086 TCGA-A8-A086-10A TCGA-A8-A086-10A-01X-A026-08 aab835a4-aabf-4be5-98ec-3f85ba2459a8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A086.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11D-A00Y-05 5170e888-3706-4401-858c-86ce02144d51 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11D-A00Y-05 5170e888-3706-4401-858c-86ce02144d51 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A08A-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11D-A00Y-05 5170e888-3706-4401-858c-86ce02144d51 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A08A-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11D-A00Y-05 5170e888-3706-4401-858c-86ce02144d51 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A08A-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11D-A011-01 46a7082e-19e7-4f1a-806b-31c2db120c34 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11D-A011-01 46a7082e-19e7-4f1a-806b-31c2db120c34 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E03_628254.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11D-A011-01 46a7082e-19e7-4f1a-806b-31c2db120c34 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E03_628254.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11D-A011-01 46a7082e-19e7-4f1a-806b-31c2db120c34 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E03_628254.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11D-A011-01 46a7082e-19e7-4f1a-806b-31c2db120c34 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E03_628254.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11D-A011-01 46a7082e-19e7-4f1a-806b-31c2db120c34 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E03_628254.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11D-A011-01 46a7082e-19e7-4f1a-806b-31c2db120c34 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E03_628254.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11D-A011-01 46a7082e-19e7-4f1a-806b-31c2db120c34 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E03_628254.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11D-A011-01 46a7082e-19e7-4f1a-806b-31c2db120c34 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E03_628254.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11D-A015-09 ad6d7d5b-1712-4847-957e-691877760862 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11D-A016-08 06c320f5-c5b8-4caa-979a-246dbf9fd372 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11D-A068-02 2f1e8911-c603-41b4-b399-bd8b31d91a75 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11R-A00Z-07 8194ebff-3ce1-4531-864d-5260c72ac140 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11R-A00Z-07 8194ebff-3ce1-4531-864d-5260c72ac140 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012020_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11R-A00Z-07 8194ebff-3ce1-4531-864d-5260c72ac140 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012020_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11R-A00Z-07 8194ebff-3ce1-4531-864d-5260c72ac140 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012020_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11R-A010-13 c2e117c3-7795-4ef4-8923-16e0e9b6594d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11R-A010-13 c2e117c3-7795-4ef4-8923-16e0e9b6594d miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A08A-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11R-A010-13 c2e117c3-7795-4ef4-8923-16e0e9b6594d miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A08A-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11W-A019-09 0257d030-6d78-452c-9dcc-79fe50533543 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11W-A019-09 0257d030-6d78-452c-9dcc-79fe50533543 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11W-A020-08 032cc4cf-846a-4b47-9d7d-f9f38edb0f6e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11X-A023-09 3ec03f77-2f50-4389-a688-8889ef043300 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08A TCGA-A8-A08A-01A TCGA-A8-A08A-01A-11X-A024-08 17a9d18e-eb93-471d-adae-0d8dfc98f3cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08A TCGA-A8-A08A-10A TCGA-A8-A08A-10A-01D-A012-01 e8d1f57d-d473-438a-96f9-32e60ab96944 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08A TCGA-A8-A08A-10A TCGA-A8-A08A-10A-01D-A012-01 e8d1f57d-d473-438a-96f9-32e60ab96944 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G10_628232.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A08A TCGA-A8-A08A-10A TCGA-A8-A08A-10A-01D-A012-01 e8d1f57d-d473-438a-96f9-32e60ab96944 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G10_628232.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08A TCGA-A8-A08A-10A TCGA-A8-A08A-10A-01D-A012-01 e8d1f57d-d473-438a-96f9-32e60ab96944 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G10_628232.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08A TCGA-A8-A08A-10A TCGA-A8-A08A-10A-01D-A012-01 e8d1f57d-d473-438a-96f9-32e60ab96944 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G10_628232.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08A TCGA-A8-A08A-10A TCGA-A8-A08A-10A-01D-A012-01 e8d1f57d-d473-438a-96f9-32e60ab96944 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G10_628232.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08A TCGA-A8-A08A-10A TCGA-A8-A08A-10A-01D-A012-01 e8d1f57d-d473-438a-96f9-32e60ab96944 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G10_628232.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08A TCGA-A8-A08A-10A TCGA-A8-A08A-10A-01D-A012-01 e8d1f57d-d473-438a-96f9-32e60ab96944 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G10_628232.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08A TCGA-A8-A08A-10A TCGA-A8-A08A-10A-01D-A012-01 e8d1f57d-d473-438a-96f9-32e60ab96944 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G10_628232.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A08A TCGA-A8-A08A-10A TCGA-A8-A08A-10A-01D-A017-09 98d77443-c50a-40db-9528-be26e0d5a9a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08A TCGA-A8-A08A-10A TCGA-A8-A08A-10A-01D-A018-08 771dd847-7d57-4aee-9298-a3de7c82c0b8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08A TCGA-A8-A08A-10A TCGA-A8-A08A-10A-01D-A069-02 7f76587a-69c3-4fdd-be57-ba989baa9369 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08A TCGA-A8-A08A-10A TCGA-A8-A08A-10A-01W-A021-09 47f8d355-c16e-49ea-919c-9924b1a9c375 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08A TCGA-A8-A08A-10A TCGA-A8-A08A-10A-01W-A021-09 47f8d355-c16e-49ea-919c-9924b1a9c375 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08A TCGA-A8-A08A-10A TCGA-A8-A08A-10A-01W-A022-08 692f23e7-b077-449b-993c-cfed21759cce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08A TCGA-A8-A08A-10A TCGA-A8-A08A-10A-01X-A025-09 0b021257-d536-453c-92a2-af98d3cabd44 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08A TCGA-A8-A08A-10A TCGA-A8-A08A-10A-01X-A026-08 ed636dcb-a3d4-45ee-b43f-34c802b3d061 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11D-A00Y-05 18256112-f01f-4c4a-b7d6-d60a2bfe3c63 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11D-A00Y-05 18256112-f01f-4c4a-b7d6-d60a2bfe3c63 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A08B-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11D-A00Y-05 18256112-f01f-4c4a-b7d6-d60a2bfe3c63 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A08B-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11D-A00Y-05 18256112-f01f-4c4a-b7d6-d60a2bfe3c63 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A08B-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11D-A011-01 95a462db-8ab9-4a3e-8463-0927b77a9a93 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11D-A011-01 95a462db-8ab9-4a3e-8463-0927b77a9a93 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D06_628390.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11D-A011-01 95a462db-8ab9-4a3e-8463-0927b77a9a93 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D06_628390.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11D-A011-01 95a462db-8ab9-4a3e-8463-0927b77a9a93 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D06_628390.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11D-A011-01 95a462db-8ab9-4a3e-8463-0927b77a9a93 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D06_628390.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11D-A011-01 95a462db-8ab9-4a3e-8463-0927b77a9a93 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D06_628390.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11D-A011-01 95a462db-8ab9-4a3e-8463-0927b77a9a93 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D06_628390.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11D-A011-01 95a462db-8ab9-4a3e-8463-0927b77a9a93 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D06_628390.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11D-A011-01 95a462db-8ab9-4a3e-8463-0927b77a9a93 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D06_628390.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11D-A015-09 d003627d-3217-43ad-bad2-5a3023a965bf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11D-A016-08 69ce0f26-2e3c-4831-9c42-62d84eaee06c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11D-A068-02 9444772c-f370-4b0d-a024-f3fde24e97d7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11D-A19H-09 f6114c69-71a1-47d5-9b28-b0227b1872f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11R-A00Z-07 0307bd0b-b59a-4996-b89d-612e72652890 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11R-A00Z-07 0307bd0b-b59a-4996-b89d-612e72652890 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011818_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11R-A00Z-07 0307bd0b-b59a-4996-b89d-612e72652890 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011818_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11R-A00Z-07 0307bd0b-b59a-4996-b89d-612e72652890 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011818_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11R-A00Z-07 0307bd0b-b59a-4996-b89d-612e72652890 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_533724.TCGA-A8-A08B-01A-11R-A00Z-07.110209_SN627_0058_B81DH0ABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11R-A00Z-07 0307bd0b-b59a-4996-b89d-612e72652890 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_533727.TCGA-A8-A08B-01A-11R-A00Z-07.110209_SN627_0058_B81DH0ABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11R-A00Z-07 0307bd0b-b59a-4996-b89d-612e72652890 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_533728.TCGA-A8-A08B-01A-11R-A00Z-07.110209_SN627_0058_B81DH0ABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11R-A010-13 dee0c3e6-537c-426a-a9b8-b90144104eb0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11R-A010-13 dee0c3e6-537c-426a-a9b8-b90144104eb0 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A08B-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11R-A010-13 dee0c3e6-537c-426a-a9b8-b90144104eb0 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A08B-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11W-A019-09 267a951b-29b7-4849-9ea7-d2205838fcc7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11W-A019-09 267a951b-29b7-4849-9ea7-d2205838fcc7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11W-A020-08 664b30e0-0ac7-436d-82b2-dcba5945ae0e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11X-A023-09 5b1e8bea-8ea6-41b7-a4f2-1c8993d56498 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08B TCGA-A8-A08B-01A TCGA-A8-A08B-01A-11X-A024-08 138604fb-f8c4-4564-8ef2-f97c5501eeee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08B TCGA-A8-A08B-10A TCGA-A8-A08B-10A-01D-A012-01 08e55390-064a-49f3-b154-c6d530a14e7f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08B TCGA-A8-A08B-10A TCGA-A8-A08B-10A-01D-A012-01 08e55390-064a-49f3-b154-c6d530a14e7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C10_628234.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A08B TCGA-A8-A08B-10A TCGA-A8-A08B-10A-01D-A012-01 08e55390-064a-49f3-b154-c6d530a14e7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C10_628234.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08B TCGA-A8-A08B-10A TCGA-A8-A08B-10A-01D-A012-01 08e55390-064a-49f3-b154-c6d530a14e7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C10_628234.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08B TCGA-A8-A08B-10A TCGA-A8-A08B-10A-01D-A012-01 08e55390-064a-49f3-b154-c6d530a14e7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C10_628234.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08B TCGA-A8-A08B-10A TCGA-A8-A08B-10A-01D-A012-01 08e55390-064a-49f3-b154-c6d530a14e7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C10_628234.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08B TCGA-A8-A08B-10A TCGA-A8-A08B-10A-01D-A012-01 08e55390-064a-49f3-b154-c6d530a14e7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C10_628234.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08B TCGA-A8-A08B-10A TCGA-A8-A08B-10A-01D-A012-01 08e55390-064a-49f3-b154-c6d530a14e7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C10_628234.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08B TCGA-A8-A08B-10A TCGA-A8-A08B-10A-01D-A012-01 08e55390-064a-49f3-b154-c6d530a14e7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C10_628234.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A08B TCGA-A8-A08B-10A TCGA-A8-A08B-10A-01D-A017-09 5363de37-3d29-40f8-9ff9-44780c92084b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08B TCGA-A8-A08B-10A TCGA-A8-A08B-10A-01D-A018-08 00535de9-f140-4576-bb85-d53911eaac81 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08B TCGA-A8-A08B-10A TCGA-A8-A08B-10A-01D-A069-02 eaa20597-de0f-4718-b43c-1106bf839063 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08B TCGA-A8-A08B-10A TCGA-A8-A08B-10A-01D-A19H-09 8ee200e1-ea79-4af1-87c4-831a4b590ecb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08B TCGA-A8-A08B-10A TCGA-A8-A08B-10A-01W-A021-09 ae64a42d-572d-46be-8392-f04ec3ab5bf9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08B TCGA-A8-A08B-10A TCGA-A8-A08B-10A-01W-A021-09 ae64a42d-572d-46be-8392-f04ec3ab5bf9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08B TCGA-A8-A08B-10A TCGA-A8-A08B-10A-01W-A022-08 6045cb6f-c231-4b30-9dcd-f30c40be609f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08B TCGA-A8-A08B-10A TCGA-A8-A08B-10A-01X-A025-09 5afc38bf-a42c-4684-b721-f717e0cb64d5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08B TCGA-A8-A08B-10A TCGA-A8-A08B-10A-01X-A026-08 9206a7d7-9585-48fa-8e0b-22d0fbf869f5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11D-A00Y-05 530b650e-cdda-484b-afdb-f1cb2c51f1b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11D-A00Y-05 530b650e-cdda-484b-afdb-f1cb2c51f1b0 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A08C-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11D-A00Y-05 530b650e-cdda-484b-afdb-f1cb2c51f1b0 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A08C-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11D-A00Y-05 530b650e-cdda-484b-afdb-f1cb2c51f1b0 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A08C-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11D-A011-01 22c2050e-587d-4dc3-8955-9578bdd050d9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11D-A011-01 22c2050e-587d-4dc3-8955-9578bdd050d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A10_628236.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11D-A011-01 22c2050e-587d-4dc3-8955-9578bdd050d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A10_628236.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11D-A011-01 22c2050e-587d-4dc3-8955-9578bdd050d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A10_628236.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11D-A011-01 22c2050e-587d-4dc3-8955-9578bdd050d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A10_628236.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11D-A011-01 22c2050e-587d-4dc3-8955-9578bdd050d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A10_628236.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11D-A011-01 22c2050e-587d-4dc3-8955-9578bdd050d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A10_628236.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11D-A011-01 22c2050e-587d-4dc3-8955-9578bdd050d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A10_628236.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11D-A011-01 22c2050e-587d-4dc3-8955-9578bdd050d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A10_628236.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11D-A015-09 488df62b-c6d3-42b3-b53e-c6fba122a74e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11D-A016-08 833a9c8a-65b6-4c3a-b12e-042ee01d40ac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11D-A068-02 7c6ee16e-36ac-4d25-983b-1ee6a65180fb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11R-A00Z-07 7c8b9d9a-653a-4dc7-8c53-b196fbd0482a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11R-A00Z-07 7c8b9d9a-653a-4dc7-8c53-b196fbd0482a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011809_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11R-A00Z-07 7c8b9d9a-653a-4dc7-8c53-b196fbd0482a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011809_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11R-A00Z-07 7c8b9d9a-653a-4dc7-8c53-b196fbd0482a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011809_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11R-A00Z-07 7c8b9d9a-653a-4dc7-8c53-b196fbd0482a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593672.TCGA-A8-A08C-01A-11R-A00Z-07.110222_SN627_0062_A81FPKABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11R-A00Z-07 7c8b9d9a-653a-4dc7-8c53-b196fbd0482a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593674.TCGA-A8-A08C-01A-11R-A00Z-07.110222_SN627_0062_A81FPKABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11R-A00Z-07 7c8b9d9a-653a-4dc7-8c53-b196fbd0482a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593880.TCGA-A8-A08C-01A-11R-A00Z-07.110222_SN627_0062_A81FPKABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11R-A010-13 053c10d5-0efb-405b-a323-6d120377b231 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11W-A019-09 54c486e6-9a10-4fcc-877d-f587f772cfd6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11W-A019-09 54c486e6-9a10-4fcc-877d-f587f772cfd6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11W-A020-08 4bc65f65-b998-478a-a6db-168058ebbf96 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11X-A023-09 bd598a78-622e-4933-a965-459d8bc405ad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08C TCGA-A8-A08C-01A TCGA-A8-A08C-01A-11X-A024-08 301f7dbb-a8fe-415a-a0fd-62786b36375e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08C TCGA-A8-A08C-10A TCGA-A8-A08C-10A-01D-A012-01 c325e547-d6f8-4098-af50-fe01707e1d47 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08C TCGA-A8-A08C-10A TCGA-A8-A08C-10A-01D-A012-01 c325e547-d6f8-4098-af50-fe01707e1d47 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G05_628384.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A08C TCGA-A8-A08C-10A TCGA-A8-A08C-10A-01D-A012-01 c325e547-d6f8-4098-af50-fe01707e1d47 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G05_628384.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08C TCGA-A8-A08C-10A TCGA-A8-A08C-10A-01D-A012-01 c325e547-d6f8-4098-af50-fe01707e1d47 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G05_628384.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08C TCGA-A8-A08C-10A TCGA-A8-A08C-10A-01D-A012-01 c325e547-d6f8-4098-af50-fe01707e1d47 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G05_628384.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08C TCGA-A8-A08C-10A TCGA-A8-A08C-10A-01D-A012-01 c325e547-d6f8-4098-af50-fe01707e1d47 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G05_628384.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08C TCGA-A8-A08C-10A TCGA-A8-A08C-10A-01D-A012-01 c325e547-d6f8-4098-af50-fe01707e1d47 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G05_628384.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08C TCGA-A8-A08C-10A TCGA-A8-A08C-10A-01D-A012-01 c325e547-d6f8-4098-af50-fe01707e1d47 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G05_628384.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08C TCGA-A8-A08C-10A TCGA-A8-A08C-10A-01D-A012-01 c325e547-d6f8-4098-af50-fe01707e1d47 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G05_628384.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A08C TCGA-A8-A08C-10A TCGA-A8-A08C-10A-01D-A017-09 06ac2280-9994-4e41-8210-9d52d9277ed7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08C TCGA-A8-A08C-10A TCGA-A8-A08C-10A-01D-A018-08 2f06aacd-84f5-4147-ae3c-e5d5db9ec6c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08C TCGA-A8-A08C-10A TCGA-A8-A08C-10A-01D-A069-02 e90aaedd-5d58-4b40-bf28-22826a438ab3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08C TCGA-A8-A08C-10A TCGA-A8-A08C-10A-01W-A021-09 1e1356c6-9919-47fc-9d6b-ad2ac256249c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08C TCGA-A8-A08C-10A TCGA-A8-A08C-10A-01W-A021-09 1e1356c6-9919-47fc-9d6b-ad2ac256249c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08C TCGA-A8-A08C-10A TCGA-A8-A08C-10A-01W-A022-08 2c62dc46-d4b7-4481-a6d1-12220ee1a1cc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08C TCGA-A8-A08C-10A TCGA-A8-A08C-10A-01X-A025-09 980ce335-ebfa-431f-80d9-0849386e119d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08C TCGA-A8-A08C-10A TCGA-A8-A08C-10A-01X-A026-08 3ed21bd0-1305-432e-9f10-96270d5a9378 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11D-A00Y-05 96d95463-c0d2-4d35-9fb5-2691e10027a7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11D-A00Y-05 96d95463-c0d2-4d35-9fb5-2691e10027a7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A08F-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11D-A00Y-05 96d95463-c0d2-4d35-9fb5-2691e10027a7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A08F-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11D-A00Y-05 96d95463-c0d2-4d35-9fb5-2691e10027a7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A08F-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11D-A011-01 91094862-5aee-4304-b503-12a163a52532 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11D-A011-01 91094862-5aee-4304-b503-12a163a52532 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D02_628264.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11D-A011-01 91094862-5aee-4304-b503-12a163a52532 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D02_628264.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11D-A011-01 91094862-5aee-4304-b503-12a163a52532 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D02_628264.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11D-A011-01 91094862-5aee-4304-b503-12a163a52532 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D02_628264.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11D-A011-01 91094862-5aee-4304-b503-12a163a52532 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D02_628264.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11D-A011-01 91094862-5aee-4304-b503-12a163a52532 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D02_628264.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11D-A011-01 91094862-5aee-4304-b503-12a163a52532 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D02_628264.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11D-A011-01 91094862-5aee-4304-b503-12a163a52532 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_D02_628264.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11D-A015-09 0643f4ee-aa4d-4b77-9d7d-e08de829aae4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11D-A016-08 d22a82ba-526d-4ab7-ade1-79c382eb2e5d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11D-A068-02 808060c9-8430-4316-b65c-d32cff7b157e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11R-A00Z-07 523e45c2-4f98-4010-b48e-bdbda62865cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11R-A00Z-07 523e45c2-4f98-4010-b48e-bdbda62865cf Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011833_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11R-A00Z-07 523e45c2-4f98-4010-b48e-bdbda62865cf Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011833_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11R-A00Z-07 523e45c2-4f98-4010-b48e-bdbda62865cf Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011833_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11R-A00Z-07 523e45c2-4f98-4010-b48e-bdbda62865cf RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593394.TCGA-A8-A08F-01A-11R-A00Z-07.110225_SN254_0195_A81LH6ABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11R-A00Z-07 523e45c2-4f98-4010-b48e-bdbda62865cf RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593398.TCGA-A8-A08F-01A-11R-A00Z-07.110225_SN254_0195_A81LH6ABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11R-A00Z-07 523e45c2-4f98-4010-b48e-bdbda62865cf RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593418.TCGA-A8-A08F-01A-11R-A00Z-07.110225_SN254_0195_A81LH6ABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11R-A010-13 47802eac-eca4-4914-8eb6-3ed69ebb6650 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11W-A019-09 4975eeda-984e-4a7a-8193-43d8b6e0271c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11W-A019-09 4975eeda-984e-4a7a-8193-43d8b6e0271c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11W-A020-08 98504422-a1c9-4c72-a1c2-1a04217aae6b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11X-A023-09 0f993ea4-65c5-479c-8af0-6107c4c1f538 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-01A TCGA-A8-A08F-01A-11X-A024-08 333249c1-9fcf-48b9-a82e-3311920b3dce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-10A TCGA-A8-A08F-10A-01D-A012-01 8bf21eab-3541-42cd-bca0-fd2176e96f13 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-10A TCGA-A8-A08F-10A-01D-A012-01 8bf21eab-3541-42cd-bca0-fd2176e96f13 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C06_628334.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-10A TCGA-A8-A08F-10A-01D-A012-01 8bf21eab-3541-42cd-bca0-fd2176e96f13 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C06_628334.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-10A TCGA-A8-A08F-10A-01D-A012-01 8bf21eab-3541-42cd-bca0-fd2176e96f13 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C06_628334.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-10A TCGA-A8-A08F-10A-01D-A012-01 8bf21eab-3541-42cd-bca0-fd2176e96f13 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C06_628334.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-10A TCGA-A8-A08F-10A-01D-A012-01 8bf21eab-3541-42cd-bca0-fd2176e96f13 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C06_628334.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-10A TCGA-A8-A08F-10A-01D-A012-01 8bf21eab-3541-42cd-bca0-fd2176e96f13 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C06_628334.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-10A TCGA-A8-A08F-10A-01D-A012-01 8bf21eab-3541-42cd-bca0-fd2176e96f13 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C06_628334.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-10A TCGA-A8-A08F-10A-01D-A012-01 8bf21eab-3541-42cd-bca0-fd2176e96f13 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C06_628334.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-10A TCGA-A8-A08F-10A-01D-A017-09 5f895b5a-88c6-4691-b419-b634ecdae9ca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-10A TCGA-A8-A08F-10A-01D-A018-08 a72c8aad-49f2-4dc2-9a0a-ecdfd55415ba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-10A TCGA-A8-A08F-10A-01D-A069-02 2e038e9c-df9d-4020-90f3-ead18a7a9168 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-10A TCGA-A8-A08F-10A-01W-A021-09 f3828bb5-e811-4992-ba01-0fe463d82cab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-10A TCGA-A8-A08F-10A-01W-A021-09 f3828bb5-e811-4992-ba01-0fe463d82cab Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-10A TCGA-A8-A08F-10A-01W-A022-08 94579536-d09d-4c7a-9aa1-7cf66377515b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-10A TCGA-A8-A08F-10A-01X-A025-09 6778906f-3db3-45d9-b6c5-76e076ebe43e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08F TCGA-A8-A08F-10A TCGA-A8-A08F-10A-01X-A026-08 463fa539-7477-4f77-8ce6-96a85963619c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11D-A00Y-05 40a9e3a5-145b-4e93-a9a4-b192a2173a6b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11D-A00Y-05 40a9e3a5-145b-4e93-a9a4-b192a2173a6b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A08G-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11D-A00Y-05 40a9e3a5-145b-4e93-a9a4-b192a2173a6b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A08G-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11D-A00Y-05 40a9e3a5-145b-4e93-a9a4-b192a2173a6b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A08G-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11D-A011-01 d46db8e4-b4f2-4a38-b4f1-57bb62d5c989 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11D-A011-01 d46db8e4-b4f2-4a38-b4f1-57bb62d5c989 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C08_628350.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11D-A011-01 d46db8e4-b4f2-4a38-b4f1-57bb62d5c989 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C08_628350.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11D-A011-01 d46db8e4-b4f2-4a38-b4f1-57bb62d5c989 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C08_628350.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11D-A011-01 d46db8e4-b4f2-4a38-b4f1-57bb62d5c989 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C08_628350.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11D-A011-01 d46db8e4-b4f2-4a38-b4f1-57bb62d5c989 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C08_628350.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11D-A011-01 d46db8e4-b4f2-4a38-b4f1-57bb62d5c989 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C08_628350.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11D-A011-01 d46db8e4-b4f2-4a38-b4f1-57bb62d5c989 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C08_628350.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11D-A011-01 d46db8e4-b4f2-4a38-b4f1-57bb62d5c989 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_C08_628350.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11D-A015-09 2494070f-d2d5-4708-9356-953fd0199a83 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11D-A016-08 7777c49c-7598-41d2-b907-fade76cc0b91 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11D-A068-02 b4a61374-4eac-4608-ad07-1904134c2a40 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11R-A00Z-07 0584b467-a0f7-45fd-9948-9a01318d34bd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11R-A00Z-07 0584b467-a0f7-45fd-9948-9a01318d34bd Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011851_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11R-A00Z-07 0584b467-a0f7-45fd-9948-9a01318d34bd Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011851_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11R-A00Z-07 0584b467-a0f7-45fd-9948-9a01318d34bd Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011851_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11R-A010-13 4d178c3d-4088-40a0-aa2b-c816c6a81750 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11R-A010-13 4d178c3d-4088-40a0-aa2b-c816c6a81750 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A08G-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11R-A010-13 4d178c3d-4088-40a0-aa2b-c816c6a81750 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A08G-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11W-A019-09 8da61928-e935-4a33-8e46-840e637163d7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11W-A019-09 8da61928-e935-4a33-8e46-840e637163d7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11W-A020-08 7574a643-2493-4498-89b1-b419321655d5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11X-A023-09 bfa96dc7-a250-4a72-8235-788c7929e983 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08G TCGA-A8-A08G-01A TCGA-A8-A08G-01A-11X-A024-08 4da75dc2-516c-404f-a86b-21ca4a410866 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08G TCGA-A8-A08G-10A TCGA-A8-A08G-10A-01D-A012-01 54e81f6d-f990-4e06-afee-5f6e69d200d1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08G TCGA-A8-A08G-10A TCGA-A8-A08G-10A-01D-A012-01 54e81f6d-f990-4e06-afee-5f6e69d200d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E06_628340.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A08G TCGA-A8-A08G-10A TCGA-A8-A08G-10A-01D-A012-01 54e81f6d-f990-4e06-afee-5f6e69d200d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E06_628340.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08G TCGA-A8-A08G-10A TCGA-A8-A08G-10A-01D-A012-01 54e81f6d-f990-4e06-afee-5f6e69d200d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E06_628340.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08G TCGA-A8-A08G-10A TCGA-A8-A08G-10A-01D-A012-01 54e81f6d-f990-4e06-afee-5f6e69d200d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E06_628340.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08G TCGA-A8-A08G-10A TCGA-A8-A08G-10A-01D-A012-01 54e81f6d-f990-4e06-afee-5f6e69d200d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E06_628340.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08G TCGA-A8-A08G-10A TCGA-A8-A08G-10A-01D-A012-01 54e81f6d-f990-4e06-afee-5f6e69d200d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E06_628340.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08G TCGA-A8-A08G-10A TCGA-A8-A08G-10A-01D-A012-01 54e81f6d-f990-4e06-afee-5f6e69d200d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E06_628340.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08G TCGA-A8-A08G-10A TCGA-A8-A08G-10A-01D-A012-01 54e81f6d-f990-4e06-afee-5f6e69d200d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E06_628340.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A08G TCGA-A8-A08G-10A TCGA-A8-A08G-10A-01D-A017-09 4d49e7f0-0f33-45a6-900e-170fdaba25b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08G TCGA-A8-A08G-10A TCGA-A8-A08G-10A-01D-A018-08 c9c14ff5-0970-4a6e-bf0b-117d9b230c17 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08G TCGA-A8-A08G-10A TCGA-A8-A08G-10A-01D-A069-02 c05a84fb-bbda-41d3-bef1-4718173b37b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08G TCGA-A8-A08G-10A TCGA-A8-A08G-10A-01W-A021-09 74a3a4af-c93a-4fcd-af11-1f5eeb847c3c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08G TCGA-A8-A08G-10A TCGA-A8-A08G-10A-01W-A021-09 74a3a4af-c93a-4fcd-af11-1f5eeb847c3c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08G TCGA-A8-A08G-10A TCGA-A8-A08G-10A-01W-A022-08 e6da9234-cdce-4958-b286-439ba4193a76 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08G TCGA-A8-A08G-10A TCGA-A8-A08G-10A-01X-A025-09 38ad900c-038a-4c22-ae21-afaced4c77eb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08G TCGA-A8-A08G-10A TCGA-A8-A08G-10A-01X-A026-08 8619a257-2551-490f-ac66-b0cf8e318baf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21D-A00Y-05 6be771e4-0cfc-41e3-bd27-c19729ef9ab5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21D-A00Y-05 6be771e4-0cfc-41e3-bd27-c19729ef9ab5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A08H-01A-21D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21D-A00Y-05 6be771e4-0cfc-41e3-bd27-c19729ef9ab5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A08H-01A-21D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21D-A00Y-05 6be771e4-0cfc-41e3-bd27-c19729ef9ab5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A08H-01A-21D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21D-A011-01 b091515b-e33a-4f0b-bc81-72dad7fb5414 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21D-A011-01 b091515b-e33a-4f0b-bc81-72dad7fb5414 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E08_628272.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21D-A011-01 b091515b-e33a-4f0b-bc81-72dad7fb5414 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E08_628272.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21D-A011-01 b091515b-e33a-4f0b-bc81-72dad7fb5414 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E08_628272.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21D-A011-01 b091515b-e33a-4f0b-bc81-72dad7fb5414 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E08_628272.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21D-A011-01 b091515b-e33a-4f0b-bc81-72dad7fb5414 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E08_628272.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21D-A011-01 b091515b-e33a-4f0b-bc81-72dad7fb5414 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E08_628272.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21D-A011-01 b091515b-e33a-4f0b-bc81-72dad7fb5414 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E08_628272.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21D-A011-01 b091515b-e33a-4f0b-bc81-72dad7fb5414 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E08_628272.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21D-A015-09 9917f48d-c11a-469b-b9a5-068e27f1b019 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21D-A016-08 5b5f0a12-3071-4500-b14b-50b13a5a473d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21D-A068-02 4d6d39a2-e19f-4171-955b-29adadf8ed38 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21R-A00Z-07 9c5eb452-caec-4a9a-9ced-215be92c91d2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21R-A00Z-07 9c5eb452-caec-4a9a-9ced-215be92c91d2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011862_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21R-A00Z-07 9c5eb452-caec-4a9a-9ced-215be92c91d2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011862_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21R-A00Z-07 9c5eb452-caec-4a9a-9ced-215be92c91d2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011862_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21R-A00Z-07 9c5eb452-caec-4a9a-9ced-215be92c91d2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445681.TCGA-A8-A08H-01A-21R-A00Z-07.110304_UNC12-SN629_0066_BC0086ABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21R-A00Z-07 9c5eb452-caec-4a9a-9ced-215be92c91d2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445763.TCGA-A8-A08H-01A-21R-A00Z-07.110304_UNC12-SN629_0066_BC0086ABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21R-A00Z-07 9c5eb452-caec-4a9a-9ced-215be92c91d2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445795.TCGA-A8-A08H-01A-21R-A00Z-07.110304_UNC12-SN629_0066_BC0086ABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21R-A010-13 6ea7e071-109b-4457-86d0-1123ab26e908 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21R-A010-13 6ea7e071-109b-4457-86d0-1123ab26e908 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A08H-01A-21R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21R-A010-13 6ea7e071-109b-4457-86d0-1123ab26e908 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A08H-01A-21R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21W-A019-09 26161c06-f816-489a-8800-e0a68a4ce78a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21W-A019-09 26161c06-f816-489a-8800-e0a68a4ce78a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21W-A020-08 c86eb296-0c98-4eae-b6b6-7598fbfaa26b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21X-A023-09 cccd5215-83ce-4c5a-83a6-55b1adece8c5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08H TCGA-A8-A08H-01A TCGA-A8-A08H-01A-21X-A024-08 5cc1aba9-a30d-4724-bf7a-aecf3699c85a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08H TCGA-A8-A08H-10A TCGA-A8-A08H-10A-01D-A012-01 561374d0-b040-47bc-a413-d9f4d20caa01 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08H TCGA-A8-A08H-10A TCGA-A8-A08H-10A-01D-A012-01 561374d0-b040-47bc-a413-d9f4d20caa01 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E10_628248.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A08H TCGA-A8-A08H-10A TCGA-A8-A08H-10A-01D-A012-01 561374d0-b040-47bc-a413-d9f4d20caa01 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E10_628248.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08H TCGA-A8-A08H-10A TCGA-A8-A08H-10A-01D-A012-01 561374d0-b040-47bc-a413-d9f4d20caa01 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E10_628248.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08H TCGA-A8-A08H-10A TCGA-A8-A08H-10A-01D-A012-01 561374d0-b040-47bc-a413-d9f4d20caa01 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E10_628248.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08H TCGA-A8-A08H-10A TCGA-A8-A08H-10A-01D-A012-01 561374d0-b040-47bc-a413-d9f4d20caa01 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E10_628248.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08H TCGA-A8-A08H-10A TCGA-A8-A08H-10A-01D-A012-01 561374d0-b040-47bc-a413-d9f4d20caa01 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E10_628248.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08H TCGA-A8-A08H-10A TCGA-A8-A08H-10A-01D-A012-01 561374d0-b040-47bc-a413-d9f4d20caa01 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E10_628248.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08H TCGA-A8-A08H-10A TCGA-A8-A08H-10A-01D-A012-01 561374d0-b040-47bc-a413-d9f4d20caa01 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E10_628248.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A08H TCGA-A8-A08H-10A TCGA-A8-A08H-10A-01D-A017-09 b9e77fe7-1a47-4099-ae87-da6146a46dee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08H TCGA-A8-A08H-10A TCGA-A8-A08H-10A-01D-A018-08 c95fb9c4-164b-45e3-a4c9-94c0677509f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08H TCGA-A8-A08H-10A TCGA-A8-A08H-10A-01D-A069-02 2a7e259c-72d9-45d7-8bb1-2a562a83bd61 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08H TCGA-A8-A08H-10A TCGA-A8-A08H-10A-01W-A021-09 c384d5d9-b1d6-4553-8f3f-7602dbaca681 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08H TCGA-A8-A08H-10A TCGA-A8-A08H-10A-01W-A021-09 c384d5d9-b1d6-4553-8f3f-7602dbaca681 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08H TCGA-A8-A08H-10A TCGA-A8-A08H-10A-01W-A022-08 1688a620-e176-40ec-8a9d-7ba1c75cfeaa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08H TCGA-A8-A08H-10A TCGA-A8-A08H-10A-01X-A025-09 adab4fd2-f6a2-4d2f-b082-63a63c2c11c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08H TCGA-A8-A08H-10A TCGA-A8-A08H-10A-01X-A026-08 c620c80c-437e-4d1f-877b-23ae44de11fa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11D-A00Y-05 8c4c5c9f-4d8a-46fe-987c-49f39255b811 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11D-A00Y-05 8c4c5c9f-4d8a-46fe-987c-49f39255b811 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A08I-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11D-A00Y-05 8c4c5c9f-4d8a-46fe-987c-49f39255b811 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A08I-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11D-A00Y-05 8c4c5c9f-4d8a-46fe-987c-49f39255b811 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A08I-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11D-A011-01 6527b4d3-3706-41e5-8106-55ed4981f593 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11D-A011-01 6527b4d3-3706-41e5-8106-55ed4981f593 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H10_628312.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11D-A011-01 6527b4d3-3706-41e5-8106-55ed4981f593 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H10_628312.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11D-A011-01 6527b4d3-3706-41e5-8106-55ed4981f593 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H10_628312.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11D-A011-01 6527b4d3-3706-41e5-8106-55ed4981f593 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H10_628312.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11D-A011-01 6527b4d3-3706-41e5-8106-55ed4981f593 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H10_628312.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11D-A011-01 6527b4d3-3706-41e5-8106-55ed4981f593 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H10_628312.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11D-A011-01 6527b4d3-3706-41e5-8106-55ed4981f593 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H10_628312.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11D-A011-01 6527b4d3-3706-41e5-8106-55ed4981f593 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H10_628312.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11D-A015-09 0b2465c3-bc00-4b2d-a894-af81260ce38e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11D-A016-08 6e4c0590-7ddd-4a27-81d0-c4be6e75eb31 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11D-A068-02 ba0c4caa-769f-48a9-8034-e1908f846eb2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11R-A00Z-07 3e853cb1-4747-4f98-be64-d5de7fba801e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11R-A00Z-07 3e853cb1-4747-4f98-be64-d5de7fba801e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011877_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11R-A00Z-07 3e853cb1-4747-4f98-be64-d5de7fba801e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011877_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11R-A00Z-07 3e853cb1-4747-4f98-be64-d5de7fba801e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011877_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11R-A00Z-07 3e853cb1-4747-4f98-be64-d5de7fba801e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_602317.TCGA-A8-A08I-01A-11R-A00Z-07.111011_UNC12-SN629_0149_AB062VABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11R-A00Z-07 3e853cb1-4747-4f98-be64-d5de7fba801e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_602404.TCGA-A8-A08I-01A-11R-A00Z-07.111011_UNC12-SN629_0149_AB062VABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11R-A00Z-07 3e853cb1-4747-4f98-be64-d5de7fba801e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_602576.TCGA-A8-A08I-01A-11R-A00Z-07.111011_UNC12-SN629_0149_AB062VABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11R-A010-13 01d904f5-ded8-4f60-8e5f-62bb3c2f6ef8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11R-A010-13 01d904f5-ded8-4f60-8e5f-62bb3c2f6ef8 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A08I-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11R-A010-13 01d904f5-ded8-4f60-8e5f-62bb3c2f6ef8 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A08I-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11W-A019-09 4525400d-0a2c-4cc7-9c71-9ad6d9faf93f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11W-A019-09 4525400d-0a2c-4cc7-9c71-9ad6d9faf93f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11W-A020-08 25869075-4bb4-4fa8-8270-ca2a5e6004cd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11X-A023-09 7d9eec66-e464-44f3-bfda-f4c24cf38acb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08I TCGA-A8-A08I-01A TCGA-A8-A08I-01A-11X-A024-08 c1d6843d-97d7-436e-8a3e-98fdd8ed4ac6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08I TCGA-A8-A08I-10A TCGA-A8-A08I-10A-01D-A012-01 39673e39-a84a-4e3d-808f-c0aad189a2d7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08I TCGA-A8-A08I-10A TCGA-A8-A08I-10A-01D-A012-01 39673e39-a84a-4e3d-808f-c0aad189a2d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B11_628298.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A08I TCGA-A8-A08I-10A TCGA-A8-A08I-10A-01D-A012-01 39673e39-a84a-4e3d-808f-c0aad189a2d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B11_628298.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08I TCGA-A8-A08I-10A TCGA-A8-A08I-10A-01D-A012-01 39673e39-a84a-4e3d-808f-c0aad189a2d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B11_628298.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08I TCGA-A8-A08I-10A TCGA-A8-A08I-10A-01D-A012-01 39673e39-a84a-4e3d-808f-c0aad189a2d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B11_628298.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08I TCGA-A8-A08I-10A TCGA-A8-A08I-10A-01D-A012-01 39673e39-a84a-4e3d-808f-c0aad189a2d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B11_628298.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08I TCGA-A8-A08I-10A TCGA-A8-A08I-10A-01D-A012-01 39673e39-a84a-4e3d-808f-c0aad189a2d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B11_628298.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08I TCGA-A8-A08I-10A TCGA-A8-A08I-10A-01D-A012-01 39673e39-a84a-4e3d-808f-c0aad189a2d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B11_628298.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08I TCGA-A8-A08I-10A TCGA-A8-A08I-10A-01D-A012-01 39673e39-a84a-4e3d-808f-c0aad189a2d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_B11_628298.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A08I TCGA-A8-A08I-10A TCGA-A8-A08I-10A-01D-A017-09 91a57e99-5d3d-4e4a-93dd-4a00e833c843 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08I TCGA-A8-A08I-10A TCGA-A8-A08I-10A-01D-A018-08 d3b43f90-b2c8-4eba-bc16-d93eb86144dd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08I TCGA-A8-A08I-10A TCGA-A8-A08I-10A-01D-A069-02 e62d2edb-7f51-46eb-9637-28e13b67b79d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08I TCGA-A8-A08I-10A TCGA-A8-A08I-10A-01W-A021-09 7e92cfa5-68b6-4dd5-a911-b3a0f44a1635 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08I TCGA-A8-A08I-10A TCGA-A8-A08I-10A-01W-A021-09 7e92cfa5-68b6-4dd5-a911-b3a0f44a1635 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08I TCGA-A8-A08I-10A TCGA-A8-A08I-10A-01W-A022-08 4ab77c60-9921-43e2-9909-d7ef71d5f8d8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08I TCGA-A8-A08I-10A TCGA-A8-A08I-10A-01X-A025-09 53a172ca-8c3a-4dba-9dce-f609d876bdaf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08I TCGA-A8-A08I-10A TCGA-A8-A08I-10A-01X-A026-08 8fe3188c-959c-41d4-8b02-d8544ec9a87f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11D-A00Y-05 182d0034-9381-46d3-9889-cefc848dcaa7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11D-A00Y-05 182d0034-9381-46d3-9889-cefc848dcaa7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A08J-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11D-A00Y-05 182d0034-9381-46d3-9889-cefc848dcaa7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A08J-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11D-A00Y-05 182d0034-9381-46d3-9889-cefc848dcaa7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A08J-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11D-A011-01 d3063866-3dfe-4bb7-a0ae-e59b059dc816 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11D-A011-01 d3063866-3dfe-4bb7-a0ae-e59b059dc816 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F10_628382.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11D-A011-01 d3063866-3dfe-4bb7-a0ae-e59b059dc816 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F10_628382.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11D-A011-01 d3063866-3dfe-4bb7-a0ae-e59b059dc816 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F10_628382.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11D-A011-01 d3063866-3dfe-4bb7-a0ae-e59b059dc816 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F10_628382.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11D-A011-01 d3063866-3dfe-4bb7-a0ae-e59b059dc816 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F10_628382.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11D-A011-01 d3063866-3dfe-4bb7-a0ae-e59b059dc816 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F10_628382.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11D-A011-01 d3063866-3dfe-4bb7-a0ae-e59b059dc816 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F10_628382.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11D-A011-01 d3063866-3dfe-4bb7-a0ae-e59b059dc816 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_F10_628382.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11D-A015-09 9e3c11c1-2960-4dca-946e-ad73e3eabcc8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11D-A016-08 7fadfa1c-e7db-430c-87f0-e5d4accab1aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11D-A068-02 5a139e83-118b-4f43-bdbc-cc80c9d750dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11R-A00Z-07 67e019fc-65c4-4274-a0f7-5a92f0f87bba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11R-A00Z-07 67e019fc-65c4-4274-a0f7-5a92f0f87bba Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011889_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11R-A00Z-07 67e019fc-65c4-4274-a0f7-5a92f0f87bba Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011889_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11R-A00Z-07 67e019fc-65c4-4274-a0f7-5a92f0f87bba Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011889_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11R-A00Z-07 67e019fc-65c4-4274-a0f7-5a92f0f87bba RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_608119.TCGA-A8-A08J-01A-11R-A00Z-07.110228_UNC10-SN254_0198_BB041RABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11R-A00Z-07 67e019fc-65c4-4274-a0f7-5a92f0f87bba RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_608166.TCGA-A8-A08J-01A-11R-A00Z-07.110228_UNC10-SN254_0198_BB041RABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11R-A00Z-07 67e019fc-65c4-4274-a0f7-5a92f0f87bba RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_608327.TCGA-A8-A08J-01A-11R-A00Z-07.110228_UNC10-SN254_0198_BB041RABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11R-A010-13 32c01db4-d95d-4339-a3e0-30c2a6ccb9aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11R-A010-13 32c01db4-d95d-4339-a3e0-30c2a6ccb9aa miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A08J-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11R-A010-13 32c01db4-d95d-4339-a3e0-30c2a6ccb9aa miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A08J-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11W-A019-09 ae458901-e900-4aaa-bde6-3eda8912fbd5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11W-A019-09 ae458901-e900-4aaa-bde6-3eda8912fbd5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11W-A020-08 a463146f-2428-46ff-9901-e0f418bec8a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11X-A023-09 c710262a-5f29-4ba7-a589-a8ea40d56f13 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08J TCGA-A8-A08J-01A TCGA-A8-A08J-01A-11X-A024-08 f041300f-b6f9-4557-9fd3-8bbbbd131576 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08J TCGA-A8-A08J-10A TCGA-A8-A08J-10A-01D-A012-01 12248703-397a-428e-88ce-460edb6897d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08J TCGA-A8-A08J-10A TCGA-A8-A08J-10A-01D-A012-01 12248703-397a-428e-88ce-460edb6897d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H05_628338.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A08J TCGA-A8-A08J-10A TCGA-A8-A08J-10A-01D-A012-01 12248703-397a-428e-88ce-460edb6897d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H05_628338.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08J TCGA-A8-A08J-10A TCGA-A8-A08J-10A-01D-A012-01 12248703-397a-428e-88ce-460edb6897d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H05_628338.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08J TCGA-A8-A08J-10A TCGA-A8-A08J-10A-01D-A012-01 12248703-397a-428e-88ce-460edb6897d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H05_628338.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08J TCGA-A8-A08J-10A TCGA-A8-A08J-10A-01D-A012-01 12248703-397a-428e-88ce-460edb6897d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H05_628338.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08J TCGA-A8-A08J-10A TCGA-A8-A08J-10A-01D-A012-01 12248703-397a-428e-88ce-460edb6897d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H05_628338.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08J TCGA-A8-A08J-10A TCGA-A8-A08J-10A-01D-A012-01 12248703-397a-428e-88ce-460edb6897d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H05_628338.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08J TCGA-A8-A08J-10A TCGA-A8-A08J-10A-01D-A012-01 12248703-397a-428e-88ce-460edb6897d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_H05_628338.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A08J TCGA-A8-A08J-10A TCGA-A8-A08J-10A-01D-A017-09 3aa9a856-5c47-486b-aa48-8107a345cef0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08J TCGA-A8-A08J-10A TCGA-A8-A08J-10A-01D-A018-08 aecf3dc8-e6be-4bb9-92f7-e188ae42a9a5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08J TCGA-A8-A08J-10A TCGA-A8-A08J-10A-01D-A069-02 7bb19543-0044-4fc4-b104-b25ef71803b4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08J TCGA-A8-A08J-10A TCGA-A8-A08J-10A-01W-A021-09 b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08J TCGA-A8-A08J-10A TCGA-A8-A08J-10A-01W-A021-09 b73ab3e7-fd15-4cc6-8cfd-aa3595bdac2b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08J TCGA-A8-A08J-10A TCGA-A8-A08J-10A-01W-A022-08 40861d33-2a2c-4fb4-a6bf-ff5b1483a84f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08J TCGA-A8-A08J-10A TCGA-A8-A08J-10A-01X-A025-09 569f3be4-5944-48a6-b4f6-421428312d52 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08J TCGA-A8-A08J-10A TCGA-A8-A08J-10A-01X-A026-08 2f6c2cc8-fc14-4b40-a166-a58ddd9c1844 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11D-A00Y-05 7e8f0806-a051-4025-bd83-d35d57633d3c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11D-A00Y-05 7e8f0806-a051-4025-bd83-d35d57633d3c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A08L-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11D-A00Y-05 7e8f0806-a051-4025-bd83-d35d57633d3c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A08L-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11D-A00Y-05 7e8f0806-a051-4025-bd83-d35d57633d3c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A08L-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11D-A011-01 35d16368-1462-4c9b-952a-b81b4e08d33c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11D-A011-01 35d16368-1462-4c9b-952a-b81b4e08d33c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E04_628332.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11D-A011-01 35d16368-1462-4c9b-952a-b81b4e08d33c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E04_628332.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11D-A011-01 35d16368-1462-4c9b-952a-b81b4e08d33c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E04_628332.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11D-A011-01 35d16368-1462-4c9b-952a-b81b4e08d33c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E04_628332.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11D-A011-01 35d16368-1462-4c9b-952a-b81b4e08d33c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E04_628332.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11D-A011-01 35d16368-1462-4c9b-952a-b81b4e08d33c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E04_628332.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11D-A011-01 35d16368-1462-4c9b-952a-b81b4e08d33c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E04_628332.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11D-A011-01 35d16368-1462-4c9b-952a-b81b4e08d33c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_E04_628332.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11D-A015-09 6cc72c2b-7ac1-4ff3-8366-653627d2f530 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11D-A016-08 374c639e-42d8-45ba-9a7a-340cd9222025 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11D-A068-02 697e7363-2e9e-4142-ac3e-8142084f4caf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11D-A19H-09 fe04d042-a4cc-4a14-8197-415ea40951aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11R-A00Z-07 0b3c65ed-ff55-45c9-b6a3-dd3a596a0271 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11R-A00Z-07 0b3c65ed-ff55-45c9-b6a3-dd3a596a0271 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012021_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11R-A00Z-07 0b3c65ed-ff55-45c9-b6a3-dd3a596a0271 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012021_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11R-A00Z-07 0b3c65ed-ff55-45c9-b6a3-dd3a596a0271 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012021_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11R-A00Z-07 0b3c65ed-ff55-45c9-b6a3-dd3a596a0271 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445392.TCGA-A8-A08L-01A-11R-A00Z-07.110310_UNC12-SN629_0069_AB05L5ABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11R-A00Z-07 0b3c65ed-ff55-45c9-b6a3-dd3a596a0271 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445396.TCGA-A8-A08L-01A-11R-A00Z-07.110310_UNC12-SN629_0069_AB05L5ABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11R-A00Z-07 0b3c65ed-ff55-45c9-b6a3-dd3a596a0271 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445546.TCGA-A8-A08L-01A-11R-A00Z-07.110310_UNC12-SN629_0069_AB05L5ABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11R-A010-13 dfe0a194-8f82-42ae-b2ef-7169d6060847 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11R-A010-13 dfe0a194-8f82-42ae-b2ef-7169d6060847 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A08L-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11R-A010-13 dfe0a194-8f82-42ae-b2ef-7169d6060847 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A08L-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11W-A019-09 8b819a59-f0c1-456a-9e81-64b5bed025c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11W-A019-09 8b819a59-f0c1-456a-9e81-64b5bed025c1 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11W-A020-08 8ae7937d-cbad-49af-a575-656a87728445 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11X-A023-09 3a3abd48-3038-4a39-899a-73fb194ec0dd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08L TCGA-A8-A08L-01A TCGA-A8-A08L-01A-11X-A024-08 27bddbf6-0b50-4a01-a083-72166b9d637d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08L TCGA-A8-A08L-10A TCGA-A8-A08L-10A-01D-A012-01 c687d339-d285-4ed0-9038-69cb48303076 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08L TCGA-A8-A08L-10A TCGA-A8-A08L-10A-01D-A012-01 c687d339-d285-4ed0-9038-69cb48303076 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G11_628224.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A08L TCGA-A8-A08L-10A TCGA-A8-A08L-10A-01D-A012-01 c687d339-d285-4ed0-9038-69cb48303076 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G11_628224.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08L TCGA-A8-A08L-10A TCGA-A8-A08L-10A-01D-A012-01 c687d339-d285-4ed0-9038-69cb48303076 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G11_628224.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08L TCGA-A8-A08L-10A TCGA-A8-A08L-10A-01D-A012-01 c687d339-d285-4ed0-9038-69cb48303076 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G11_628224.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08L TCGA-A8-A08L-10A TCGA-A8-A08L-10A-01D-A012-01 c687d339-d285-4ed0-9038-69cb48303076 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G11_628224.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08L TCGA-A8-A08L-10A TCGA-A8-A08L-10A-01D-A012-01 c687d339-d285-4ed0-9038-69cb48303076 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G11_628224.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08L TCGA-A8-A08L-10A TCGA-A8-A08L-10A-01D-A012-01 c687d339-d285-4ed0-9038-69cb48303076 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G11_628224.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08L TCGA-A8-A08L-10A TCGA-A8-A08L-10A-01D-A012-01 c687d339-d285-4ed0-9038-69cb48303076 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G11_628224.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A08L TCGA-A8-A08L-10A TCGA-A8-A08L-10A-01D-A017-09 7ee02fdf-e1be-481c-8bd2-8cd3fb04cf9c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08L TCGA-A8-A08L-10A TCGA-A8-A08L-10A-01D-A018-08 545584ed-3804-452b-ac62-a70d9230d111 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08L TCGA-A8-A08L-10A TCGA-A8-A08L-10A-01D-A069-02 9edfbfea-5f07-4916-bdeb-713aba784ef7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08L TCGA-A8-A08L-10A TCGA-A8-A08L-10A-01D-A19H-09 98051587-e722-4fbb-aaf6-2b310f555ed0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08L TCGA-A8-A08L-10A TCGA-A8-A08L-10A-01W-A021-09 3f7a64f1-bed9-4e3f-9109-09c320e2fc96 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08L TCGA-A8-A08L-10A TCGA-A8-A08L-10A-01W-A021-09 3f7a64f1-bed9-4e3f-9109-09c320e2fc96 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08L TCGA-A8-A08L-10A TCGA-A8-A08L-10A-01W-A022-08 aa7fffed-76a7-40ca-9a9d-2173390567b1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08L TCGA-A8-A08L-10A TCGA-A8-A08L-10A-01X-A025-09 4505236b-5863-4d5e-ae60-fe3ecc267b90 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08L TCGA-A8-A08L-10A TCGA-A8-A08L-10A-01X-A026-08 eb1ed743-94d9-4d81-9fe4-09d922bb66b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08O TCGA-A8-A08O-01A TCGA-A8-A08O-01A-21D-A058-05 ef172e84-5818-455d-8b5b-2ced5d6b5cea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A08O TCGA-A8-A08O-01A TCGA-A8-A08O-01A-21D-A059-01 84e50324-d98b-4fa7-b6df-27714ed34a48 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A08O TCGA-A8-A08O-01A TCGA-A8-A08O-01A-21D-A059-01 84e50324-d98b-4fa7-b6df-27714ed34a48 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G10_697078.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-A8-A08O TCGA-A8-A08O-01A TCGA-A8-A08O-01A-21D-A059-01 84e50324-d98b-4fa7-b6df-27714ed34a48 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G10_697078.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A8-A08O TCGA-A8-A08O-01A TCGA-A8-A08O-01A-21D-A059-01 84e50324-d98b-4fa7-b6df-27714ed34a48 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G10_697078.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A8-A08O TCGA-A8-A08O-01A TCGA-A8-A08O-01A-21D-A059-01 84e50324-d98b-4fa7-b6df-27714ed34a48 SNP Genome_Wide_SNP_6 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1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A08O TCGA-A8-A08O-01A TCGA-A8-A08O-01A-21D-A10P-05 50032da5-6947-4f05-969d-c172d6fa34ca DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486023_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-A8-A08O TCGA-A8-A08O-01A TCGA-A8-A08O-01A-21D-A10P-05 50032da5-6947-4f05-969d-c172d6fa34ca DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486023_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-A8-A08O TCGA-A8-A08O-01A TCGA-A8-A08O-01A-21D-A10P-05 50032da5-6947-4f05-969d-c172d6fa34ca DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-A8-A08O-01A-21D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-A8-A08O TCGA-A8-A08O-01A TCGA-A8-A08O-01A-21D-A10P-05 50032da5-6947-4f05-969d-c172d6fa34ca DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-A8-A08O-01A-21D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-A8-A08O TCGA-A8-A08O-01A TCGA-A8-A08O-01A-21R-A056-07 f71db767-ac59-49c8-b6a9-50bf20767ddc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A08O TCGA-A8-A08O-01A TCGA-A8-A08O-01A-21R-A056-07 f71db767-ac59-49c8-b6a9-50bf20767ddc Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012265_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-A8-A08O TCGA-A8-A08O-01A TCGA-A8-A08O-01A-21R-A056-07 f71db767-ac59-49c8-b6a9-50bf20767ddc Expression-Genes AgilentG4502A_07_3 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A08O TCGA-A8-A08O-10A TCGA-A8-A08O-10A-01D-A059-01 8a1ae20f-88a3-45d2-97e8-89f102733d50 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A08O TCGA-A8-A08O-10A TCGA-A8-A08O-10A-01D-A059-01 8a1ae20f-88a3-45d2-97e8-89f102733d50 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F03_697102.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-A8-A08O TCGA-A8-A08O-10A TCGA-A8-A08O-10A-01D-A059-01 8a1ae20f-88a3-45d2-97e8-89f102733d50 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F03_697102.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A8-A08O TCGA-A8-A08O-10A TCGA-A8-A08O-10A-01D-A059-01 8a1ae20f-88a3-45d2-97e8-89f102733d50 SNP Genome_Wide_SNP_6 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1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A08O TCGA-A8-A08O-10A TCGA-A8-A08O-10A-01W-A070-08 efd97d5d-da3e-4ca0-946c-a5cdccb81a5b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A08O TCGA-A8-A08O-10A TCGA-A8-A08O-10A-01W-A071-09 ed048af2-2fc2-4c5c-9f8d-086a864a8b77 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A08O TCGA-A8-A08O-10A TCGA-A8-A08O-10A-01W-A071-09 ed048af2-2fc2-4c5c-9f8d-086a864a8b77 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08O TCGA-A8-A08O-10A TCGA-A8-A08O-10A-01X-A072-08 042a6ec7-0aaa-499e-93ff-e9033177fee0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A08O TCGA-A8-A08O-10A TCGA-A8-A08O-10A-01X-A073-09 56fc3e3b-86d0-401c-8d7f-9762f1de0ee5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11D-A00Y-05 ea94e1a5-3f4b-4e32-9025-83545d14907d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11D-A00Y-05 ea94e1a5-3f4b-4e32-9025-83545d14907d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A08P-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11D-A00Y-05 ea94e1a5-3f4b-4e32-9025-83545d14907d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A08P-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11D-A00Y-05 ea94e1a5-3f4b-4e32-9025-83545d14907d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A08P-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11D-A011-01 0a972399-22e7-41f5-af02-e2cbc04c72f3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11D-A011-01 0a972399-22e7-41f5-af02-e2cbc04c72f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A06_628346.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11D-A011-01 0a972399-22e7-41f5-af02-e2cbc04c72f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A06_628346.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11D-A011-01 0a972399-22e7-41f5-af02-e2cbc04c72f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A06_628346.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11D-A011-01 0a972399-22e7-41f5-af02-e2cbc04c72f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A06_628346.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11D-A011-01 0a972399-22e7-41f5-af02-e2cbc04c72f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A06_628346.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11D-A011-01 0a972399-22e7-41f5-af02-e2cbc04c72f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A06_628346.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11D-A011-01 0a972399-22e7-41f5-af02-e2cbc04c72f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A06_628346.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11D-A011-01 0a972399-22e7-41f5-af02-e2cbc04c72f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A06_628346.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11D-A015-09 c41a6c26-c70f-49e4-8ff8-aaf8256fe127 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11D-A016-08 7d18263e-a797-458d-8244-1bc2f432dfb1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11D-A068-02 b3726c7c-3cd3-4f79-9545-3cd1288d3bb1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11R-A00Z-07 f8dbf3ce-7c30-4e62-a25f-d98843794672 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11R-A00Z-07 f8dbf3ce-7c30-4e62-a25f-d98843794672 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011819_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11R-A00Z-07 f8dbf3ce-7c30-4e62-a25f-d98843794672 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011819_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11R-A00Z-07 f8dbf3ce-7c30-4e62-a25f-d98843794672 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011819_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11R-A00Z-07 f8dbf3ce-7c30-4e62-a25f-d98843794672 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_533952.TCGA-A8-A08P-01A-11R-A00Z-07.110209_SN627_0058_B81DH0ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11R-A00Z-07 f8dbf3ce-7c30-4e62-a25f-d98843794672 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_533954.TCGA-A8-A08P-01A-11R-A00Z-07.110209_SN627_0058_B81DH0ABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11R-A00Z-07 f8dbf3ce-7c30-4e62-a25f-d98843794672 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_533959.TCGA-A8-A08P-01A-11R-A00Z-07.110209_SN627_0058_B81DH0ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11R-A010-13 04a3ec16-1f59-4acd-a0b3-5899083b5898 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11W-A019-09 2fbe3da3-ce62-4edf-933b-367f983e221a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11W-A019-09 2fbe3da3-ce62-4edf-933b-367f983e221a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11W-A020-08 cca8f3ba-eab3-4f9f-a604-2ec8fa279f3a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11X-A023-09 fcf3437a-58f8-415c-b141-038e321d5ba6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08P TCGA-A8-A08P-01A TCGA-A8-A08P-01A-11X-A024-08 6b0b2d23-d026-4e37-8727-e7a4357326cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08P TCGA-A8-A08P-10A TCGA-A8-A08P-10A-01D-A012-01 1207ae3f-0eba-46d9-b1ad-e7147a50aa52 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08P TCGA-A8-A08P-10A TCGA-A8-A08P-10A-01D-A012-01 1207ae3f-0eba-46d9-b1ad-e7147a50aa52 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A11_628370.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A08P TCGA-A8-A08P-10A TCGA-A8-A08P-10A-01D-A012-01 1207ae3f-0eba-46d9-b1ad-e7147a50aa52 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A11_628370.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08P TCGA-A8-A08P-10A TCGA-A8-A08P-10A-01D-A012-01 1207ae3f-0eba-46d9-b1ad-e7147a50aa52 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A11_628370.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08P TCGA-A8-A08P-10A TCGA-A8-A08P-10A-01D-A012-01 1207ae3f-0eba-46d9-b1ad-e7147a50aa52 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A11_628370.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08P TCGA-A8-A08P-10A TCGA-A8-A08P-10A-01D-A012-01 1207ae3f-0eba-46d9-b1ad-e7147a50aa52 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A11_628370.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08P TCGA-A8-A08P-10A TCGA-A8-A08P-10A-01D-A012-01 1207ae3f-0eba-46d9-b1ad-e7147a50aa52 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A11_628370.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08P TCGA-A8-A08P-10A TCGA-A8-A08P-10A-01D-A012-01 1207ae3f-0eba-46d9-b1ad-e7147a50aa52 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A11_628370.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08P TCGA-A8-A08P-10A TCGA-A8-A08P-10A-01D-A012-01 1207ae3f-0eba-46d9-b1ad-e7147a50aa52 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A11_628370.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A08P TCGA-A8-A08P-10A TCGA-A8-A08P-10A-01D-A017-09 14a7499e-5e99-4336-8012-0c7674f2a880 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08P TCGA-A8-A08P-10A TCGA-A8-A08P-10A-01D-A018-08 0147a2e5-c5bb-458e-a14e-df0acf2aff29 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08P TCGA-A8-A08P-10A TCGA-A8-A08P-10A-01D-A069-02 58cbbae2-ceb7-4517-a537-b852c3ac3c65 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08P TCGA-A8-A08P-10A TCGA-A8-A08P-10A-01W-A021-09 fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08P TCGA-A8-A08P-10A TCGA-A8-A08P-10A-01W-A021-09 fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08P TCGA-A8-A08P-10A TCGA-A8-A08P-10A-01W-A022-08 f79df46e-c383-4c56-9c04-84068194c3c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08P TCGA-A8-A08P-10A TCGA-A8-A08P-10A-01X-A025-09 1a745edf-6d53-43e2-b0ec-40d84269cd6e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08P TCGA-A8-A08P-10A TCGA-A8-A08P-10A-01X-A026-08 3cf90bca-3977-434a-b85d-30b52862e770 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11D-A032-05 f717a392-c5f1-42b8-85aa-1512ffcfc4e1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11D-A032-05 f717a392-c5f1-42b8-85aa-1512ffcfc4e1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A8-A08R-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11D-A032-05 f717a392-c5f1-42b8-85aa-1512ffcfc4e1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A8-A08R-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11D-A032-05 f717a392-c5f1-42b8-85aa-1512ffcfc4e1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A8-A08R-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11D-A033-02 23e5197f-48c7-4be1-98e4-93f6c542551b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11D-A036-01 a60f9ab6-65cb-4ef0-89ae-33db4d5546c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11D-A036-01 a60f9ab6-65cb-4ef0-89ae-33db4d5546c4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G06_666974.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11D-A036-01 a60f9ab6-65cb-4ef0-89ae-33db4d5546c4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G06_666974.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11D-A036-01 a60f9ab6-65cb-4ef0-89ae-33db4d5546c4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G06_666974.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11D-A036-01 a60f9ab6-65cb-4ef0-89ae-33db4d5546c4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G06_666974.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11D-A036-01 a60f9ab6-65cb-4ef0-89ae-33db4d5546c4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G06_666974.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11D-A036-01 a60f9ab6-65cb-4ef0-89ae-33db4d5546c4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G06_666974.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11D-A036-01 a60f9ab6-65cb-4ef0-89ae-33db4d5546c4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G06_666974.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11D-A036-01 a60f9ab6-65cb-4ef0-89ae-33db4d5546c4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G06_666974.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11D-A044-08 9c54256b-2507-406a-8b0b-e997d7b07499 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11D-A045-09 c4316f1a-0f3e-49eb-8074-1b7ee09876cc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11R-A034-07 3a1d8959-f829-4b8a-a65f-70a51845f118 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11R-A034-07 3a1d8959-f829-4b8a-a65f-70a51845f118 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012078_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11R-A034-07 3a1d8959-f829-4b8a-a65f-70a51845f118 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012078_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11R-A034-07 3a1d8959-f829-4b8a-a65f-70a51845f118 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012078_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11R-A034-07 3a1d8959-f829-4b8a-a65f-70a51845f118 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_657614.TCGA-A8-A08R-01A-11R-A034-07.110302_UNC11-SN627_0066_AB047KABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11R-A034-07 3a1d8959-f829-4b8a-a65f-70a51845f118 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_657616.TCGA-A8-A08R-01A-11R-A034-07.110302_UNC11-SN627_0066_AB047KABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11R-A034-07 3a1d8959-f829-4b8a-a65f-70a51845f118 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_657739.TCGA-A8-A08R-01A-11R-A034-07.110302_UNC11-SN627_0066_AB047KABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11R-A035-13 cb67459a-a8bf-4a9c-8608-68374c0464ab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11R-A035-13 cb67459a-a8bf-4a9c-8608-68374c0464ab miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A08R-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11R-A035-13 cb67459a-a8bf-4a9c-8608-68374c0464ab miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A08R-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11W-A050-09 05362091-8e04-46e2-81e7-1efddc0d8c63 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11W-A050-09 05362091-8e04-46e2-81e7-1efddc0d8c63 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11W-A051-08 dd966b87-f859-46dc-82a3-70cf9809f096 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11X-A048-08 e64d8101-9ac8-4c6c-be2e-17fd9264a7f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A08R TCGA-A8-A08R-01A TCGA-A8-A08R-01A-11X-A049-09 43e48206-2b8d-4834-a113-63b531716c5c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A08R TCGA-A8-A08R-10A TCGA-A8-A08R-10A-01D-A031-02 b356ad72-d49c-410c-b53d-8d358c6e128a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A08R TCGA-A8-A08R-10A TCGA-A8-A08R-10A-01D-A037-01 dd14c2ad-d07b-47b7-ac1f-6817f972e15f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A08R TCGA-A8-A08R-10A TCGA-A8-A08R-10A-01D-A037-01 dd14c2ad-d07b-47b7-ac1f-6817f972e15f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D05_666940.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A8-A08R TCGA-A8-A08R-10A TCGA-A8-A08R-10A-01D-A037-01 dd14c2ad-d07b-47b7-ac1f-6817f972e15f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D05_666940.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A08R TCGA-A8-A08R-10A TCGA-A8-A08R-10A-01D-A037-01 dd14c2ad-d07b-47b7-ac1f-6817f972e15f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D05_666940.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A08R TCGA-A8-A08R-10A TCGA-A8-A08R-10A-01D-A037-01 dd14c2ad-d07b-47b7-ac1f-6817f972e15f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D05_666940.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A08R TCGA-A8-A08R-10A TCGA-A8-A08R-10A-01D-A037-01 dd14c2ad-d07b-47b7-ac1f-6817f972e15f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D05_666940.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A08R TCGA-A8-A08R-10A TCGA-A8-A08R-10A-01D-A037-01 dd14c2ad-d07b-47b7-ac1f-6817f972e15f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D05_666940.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A08R TCGA-A8-A08R-10A TCGA-A8-A08R-10A-01D-A037-01 dd14c2ad-d07b-47b7-ac1f-6817f972e15f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D05_666940.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A08R TCGA-A8-A08R-10A TCGA-A8-A08R-10A-01D-A037-01 dd14c2ad-d07b-47b7-ac1f-6817f972e15f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D05_666940.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A8-A08R TCGA-A8-A08R-10A TCGA-A8-A08R-10A-01D-A046-08 a6da4000-d86a-45a4-88cf-2471a6068ec2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A08R TCGA-A8-A08R-10A TCGA-A8-A08R-10A-01D-A047-09 2d5f214b-1f23-423c-8fec-dd34b484de91 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A08R TCGA-A8-A08R-10A TCGA-A8-A08R-10A-01W-A053-08 46d05754-d9f2-4483-8826-bd808e19f184 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A08R TCGA-A8-A08R-10A TCGA-A8-A08R-10A-01W-A055-09 f1681b14-25e1-4bc6-a97d-18928662d45b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A08R TCGA-A8-A08R-10A TCGA-A8-A08R-10A-01W-A055-09 f1681b14-25e1-4bc6-a97d-18928662d45b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08R TCGA-A8-A08R-10A TCGA-A8-A08R-10A-01X-A052-08 699b1ad4-94dc-4f09-a5b3-223a1378d2b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A08R TCGA-A8-A08R-10A TCGA-A8-A08R-10A-01X-A054-09 f380be2d-3638-4e57-8fd7-ad3b02ad55fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11D-A032-05 de6e39f3-6cec-45ed-b70e-e13a59ca02ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11D-A032-05 de6e39f3-6cec-45ed-b70e-e13a59ca02ef DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A8-A08S-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11D-A032-05 de6e39f3-6cec-45ed-b70e-e13a59ca02ef DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A8-A08S-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11D-A032-05 de6e39f3-6cec-45ed-b70e-e13a59ca02ef DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A8-A08S-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11D-A033-02 d2181bc7-d3df-4042-b28d-ca7e2b016f75 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11D-A036-01 3ab709a7-87e2-44e5-bce1-ca2a0fc0286e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11D-A036-01 3ab709a7-87e2-44e5-bce1-ca2a0fc0286e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F09_666968.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11D-A036-01 3ab709a7-87e2-44e5-bce1-ca2a0fc0286e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F09_666968.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11D-A036-01 3ab709a7-87e2-44e5-bce1-ca2a0fc0286e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F09_666968.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11D-A036-01 3ab709a7-87e2-44e5-bce1-ca2a0fc0286e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F09_666968.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11D-A036-01 3ab709a7-87e2-44e5-bce1-ca2a0fc0286e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F09_666968.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11D-A036-01 3ab709a7-87e2-44e5-bce1-ca2a0fc0286e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F09_666968.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11D-A036-01 3ab709a7-87e2-44e5-bce1-ca2a0fc0286e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F09_666968.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11D-A036-01 3ab709a7-87e2-44e5-bce1-ca2a0fc0286e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F09_666968.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11D-A044-08 a52f171c-ee25-4b8a-8cb5-187314d623ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11D-A045-09 d7a89ce1-7ec1-4d1e-bc25-738697e7f7cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11D-A19H-09 2c6f1862-bb82-4e7e-9cb3-338bdf022ff4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11R-A034-07 667c209e-9b4a-474d-8f69-102cfaffddf2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11R-A034-07 667c209e-9b4a-474d-8f69-102cfaffddf2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012025_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11R-A034-07 667c209e-9b4a-474d-8f69-102cfaffddf2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012025_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11R-A034-07 667c209e-9b4a-474d-8f69-102cfaffddf2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012025_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11R-A034-07 667c209e-9b4a-474d-8f69-102cfaffddf2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_694666.TCGA-A8-A08S-01A-11R-A034-07.110302_UNC11-SN627_0066_AB047KABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11R-A034-07 667c209e-9b4a-474d-8f69-102cfaffddf2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_694693.TCGA-A8-A08S-01A-11R-A034-07.110302_UNC11-SN627_0066_AB047KABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11R-A034-07 667c209e-9b4a-474d-8f69-102cfaffddf2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_694852.TCGA-A8-A08S-01A-11R-A034-07.110302_UNC11-SN627_0066_AB047KABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11R-A035-13 5f73b0c9-1fca-4c01-bd25-81b6ca122dbc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11R-A035-13 5f73b0c9-1fca-4c01-bd25-81b6ca122dbc miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A08S-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11R-A035-13 5f73b0c9-1fca-4c01-bd25-81b6ca122dbc miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A08S-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11W-A050-09 9c981525-80af-4f79-b94a-be00131ab872 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11W-A051-08 ae0ead02-b126-415b-b493-8cc197cb6a88 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11X-A048-08 efdb73f2-513c-4ec6-a0b2-6d86f6d0ff47 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-01A TCGA-A8-A08S-01A-11X-A049-09 975cebd6-cc02-4c60-8429-8cf6e090b9d8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-10A TCGA-A8-A08S-10A-01D-A031-02 d82cd4d7-0777-4b01-a14b-c9e9b18f5262 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-10A TCGA-A8-A08S-10A-01D-A037-01 a2027c6e-05e0-4415-9c64-2dcaaf213593 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-10A TCGA-A8-A08S-10A-01D-A037-01 a2027c6e-05e0-4415-9c64-2dcaaf213593 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E06_666884.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-10A TCGA-A8-A08S-10A-01D-A037-01 a2027c6e-05e0-4415-9c64-2dcaaf213593 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E06_666884.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-10A TCGA-A8-A08S-10A-01D-A037-01 a2027c6e-05e0-4415-9c64-2dcaaf213593 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E06_666884.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-10A TCGA-A8-A08S-10A-01D-A037-01 a2027c6e-05e0-4415-9c64-2dcaaf213593 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E06_666884.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-10A TCGA-A8-A08S-10A-01D-A037-01 a2027c6e-05e0-4415-9c64-2dcaaf213593 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E06_666884.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-10A TCGA-A8-A08S-10A-01D-A037-01 a2027c6e-05e0-4415-9c64-2dcaaf213593 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E06_666884.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-10A TCGA-A8-A08S-10A-01D-A037-01 a2027c6e-05e0-4415-9c64-2dcaaf213593 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E06_666884.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-10A TCGA-A8-A08S-10A-01D-A037-01 a2027c6e-05e0-4415-9c64-2dcaaf213593 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E06_666884.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-10A TCGA-A8-A08S-10A-01D-A046-08 471d03e1-2041-45e2-b3ea-b0d498e15bc9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-10A TCGA-A8-A08S-10A-01D-A047-09 0e025eb8-52db-4a25-ad9a-2040077e4703 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-10A TCGA-A8-A08S-10A-01D-A19H-09 a2c71708-a460-4cee-af93-d070be1e6d2c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-10A TCGA-A8-A08S-10A-01W-A053-08 180edd93-3588-48de-9021-cdf0263fab58 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-10A TCGA-A8-A08S-10A-01W-A055-09 91135c15-292f-49d0-9eb0-ca16ac6a6a32 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-10A TCGA-A8-A08S-10A-01X-A052-08 885bf20f-48f4-4de5-933b-37af4660b8c2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08S TCGA-A8-A08S-10A TCGA-A8-A08S-10A-01X-A054-09 acaa3c58-c5ff-4140-9585-42c19c5b10ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21D-A00Y-05 9754f84a-2775-47ca-84c0-0d435f82bef1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21D-A00Y-05 9754f84a-2775-47ca-84c0-0d435f82bef1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A08T-01A-21D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21D-A00Y-05 9754f84a-2775-47ca-84c0-0d435f82bef1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A08T-01A-21D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21D-A00Y-05 9754f84a-2775-47ca-84c0-0d435f82bef1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A08T-01A-21D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21D-A011-01 dfe66ee6-0535-42b6-b6b1-b961604d8a27 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21D-A011-01 dfe66ee6-0535-42b6-b6b1-b961604d8a27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G09_628306.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21D-A011-01 dfe66ee6-0535-42b6-b6b1-b961604d8a27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G09_628306.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21D-A011-01 dfe66ee6-0535-42b6-b6b1-b961604d8a27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G09_628306.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21D-A011-01 dfe66ee6-0535-42b6-b6b1-b961604d8a27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G09_628306.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21D-A011-01 dfe66ee6-0535-42b6-b6b1-b961604d8a27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G09_628306.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21D-A011-01 dfe66ee6-0535-42b6-b6b1-b961604d8a27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G09_628306.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21D-A011-01 dfe66ee6-0535-42b6-b6b1-b961604d8a27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G09_628306.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21D-A011-01 dfe66ee6-0535-42b6-b6b1-b961604d8a27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_G09_628306.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21D-A015-09 e2707fa1-a085-4fa3-a907-17d66e7fb1a5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21D-A016-08 48864f7e-e4f0-477d-9f88-0b92cea6a099 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21D-A068-02 137e8842-019c-41e9-82f8-437e8b3b5c24 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21R-A00Z-07 ed6ebb15-1401-49e0-be9a-e1391e84b374 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21R-A00Z-07 ed6ebb15-1401-49e0-be9a-e1391e84b374 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011810_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21R-A00Z-07 ed6ebb15-1401-49e0-be9a-e1391e84b374 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011810_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21R-A00Z-07 ed6ebb15-1401-49e0-be9a-e1391e84b374 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011810_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21R-A00Z-07 ed6ebb15-1401-49e0-be9a-e1391e84b374 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593603.TCGA-A8-A08T-01A-21R-A00Z-07.110222_SN627_0062_A81FPKABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21R-A00Z-07 ed6ebb15-1401-49e0-be9a-e1391e84b374 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593605.TCGA-A8-A08T-01A-21R-A00Z-07.110222_SN627_0062_A81FPKABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21R-A00Z-07 ed6ebb15-1401-49e0-be9a-e1391e84b374 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593703.TCGA-A8-A08T-01A-21R-A00Z-07.110222_SN627_0062_A81FPKABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21R-A010-13 ce6b5387-41be-4f4b-bd0e-ef6bed4d3021 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21R-A010-13 ce6b5387-41be-4f4b-bd0e-ef6bed4d3021 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A08T-01A-21R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21R-A010-13 ce6b5387-41be-4f4b-bd0e-ef6bed4d3021 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A08T-01A-21R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21W-A019-09 af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21W-A019-09 af5f43d9-5ff3-4fd8-9c1c-30a88d2bab8e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21W-A020-08 7a206b60-bfd0-464a-a867-6b85bf1326e3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21X-A023-09 44f7bbc3-0113-4d1a-8e5d-4d5081653554 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08T TCGA-A8-A08T-01A TCGA-A8-A08T-01A-21X-A024-08 6c921229-d7d3-4c8a-805c-00b83aa77aad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08T TCGA-A8-A08T-10A TCGA-A8-A08T-10A-01D-A012-01 89371644-25cd-43f3-afb3-d8f350422bdd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08T TCGA-A8-A08T-10A TCGA-A8-A08T-10A-01D-A012-01 89371644-25cd-43f3-afb3-d8f350422bdd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A05_628252.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A08T TCGA-A8-A08T-10A TCGA-A8-A08T-10A-01D-A012-01 89371644-25cd-43f3-afb3-d8f350422bdd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A05_628252.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08T TCGA-A8-A08T-10A TCGA-A8-A08T-10A-01D-A012-01 89371644-25cd-43f3-afb3-d8f350422bdd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A05_628252.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08T TCGA-A8-A08T-10A TCGA-A8-A08T-10A-01D-A012-01 89371644-25cd-43f3-afb3-d8f350422bdd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A05_628252.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08T TCGA-A8-A08T-10A TCGA-A8-A08T-10A-01D-A012-01 89371644-25cd-43f3-afb3-d8f350422bdd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A05_628252.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08T TCGA-A8-A08T-10A TCGA-A8-A08T-10A-01D-A012-01 89371644-25cd-43f3-afb3-d8f350422bdd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A05_628252.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08T TCGA-A8-A08T-10A TCGA-A8-A08T-10A-01D-A012-01 89371644-25cd-43f3-afb3-d8f350422bdd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A05_628252.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08T TCGA-A8-A08T-10A TCGA-A8-A08T-10A-01D-A012-01 89371644-25cd-43f3-afb3-d8f350422bdd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/CUSKS_p_TCGAb47_SNP_1N_GenomeWideSNP_6_A05_628252.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A08T TCGA-A8-A08T-10A TCGA-A8-A08T-10A-01D-A017-09 6e7f3cce-e204-4d1c-a095-b23f99b27e8a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08T TCGA-A8-A08T-10A TCGA-A8-A08T-10A-01D-A018-08 22e72f8d-7c6c-4e1b-bbc2-3f24bc100050 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08T TCGA-A8-A08T-10A TCGA-A8-A08T-10A-01D-A069-02 5190cf7f-5c0e-468e-a760-3dd4f24bf183 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08T TCGA-A8-A08T-10A TCGA-A8-A08T-10A-01W-A021-09 84831f09-08af-4e3c-93a5-49b058ab40d5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08T TCGA-A8-A08T-10A TCGA-A8-A08T-10A-01W-A021-09 84831f09-08af-4e3c-93a5-49b058ab40d5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08T TCGA-A8-A08T-10A TCGA-A8-A08T-10A-01W-A022-08 e3346091-be60-431e-98bb-bb2bd370d21e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08T TCGA-A8-A08T-10A TCGA-A8-A08T-10A-01X-A025-09 a2677d75-e983-4ad3-b76e-29efaf0f819b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08T TCGA-A8-A08T-10A TCGA-A8-A08T-10A-01X-A026-08 9305b76e-31fe-4f42-aede-711cac4089fb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21D-A00Y-05 92ff60a1-1183-46ec-97b4-14654a2ee606 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21D-A00Y-05 92ff60a1-1183-46ec-97b4-14654a2ee606 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A08X-01A-21D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21D-A00Y-05 92ff60a1-1183-46ec-97b4-14654a2ee606 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A08X-01A-21D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21D-A00Y-05 92ff60a1-1183-46ec-97b4-14654a2ee606 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A08X-01A-21D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21D-A011-01 04174e2d-2241-4ac5-a0b1-653b8fd41db9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21D-A011-01 04174e2d-2241-4ac5-a0b1-653b8fd41db9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B04_628584.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21D-A011-01 04174e2d-2241-4ac5-a0b1-653b8fd41db9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B04_628584.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21D-A011-01 04174e2d-2241-4ac5-a0b1-653b8fd41db9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B04_628584.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21D-A011-01 04174e2d-2241-4ac5-a0b1-653b8fd41db9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B04_628584.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21D-A011-01 04174e2d-2241-4ac5-a0b1-653b8fd41db9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B04_628584.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21D-A011-01 04174e2d-2241-4ac5-a0b1-653b8fd41db9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B04_628584.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21D-A011-01 04174e2d-2241-4ac5-a0b1-653b8fd41db9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B04_628584.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21D-A011-01 04174e2d-2241-4ac5-a0b1-653b8fd41db9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B04_628584.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21D-A015-09 db806a55-d144-4c86-ae95-ffd32bc61f14 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21D-A016-08 a62d0fc3-fbd9-4697-9c09-681935069543 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21D-A068-02 01334fdd-64d4-4f83-b66a-e5e973ce0c24 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21R-A00Z-07 354adce5-6ca4-4d6d-a519-4eabc01c6b36 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21R-A00Z-07 354adce5-6ca4-4d6d-a519-4eabc01c6b36 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011834_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21R-A00Z-07 354adce5-6ca4-4d6d-a519-4eabc01c6b36 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011834_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21R-A00Z-07 354adce5-6ca4-4d6d-a519-4eabc01c6b36 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011834_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21R-A00Z-07 354adce5-6ca4-4d6d-a519-4eabc01c6b36 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_608531.TCGA-A8-A08X-01A-21R-A00Z-07.110225_SN254_0195_A81LH6ABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21R-A00Z-07 354adce5-6ca4-4d6d-a519-4eabc01c6b36 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_608537.TCGA-A8-A08X-01A-21R-A00Z-07.110225_SN254_0195_A81LH6ABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21R-A00Z-07 354adce5-6ca4-4d6d-a519-4eabc01c6b36 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_608662.TCGA-A8-A08X-01A-21R-A00Z-07.110225_SN254_0195_A81LH6ABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21R-A010-13 99119fef-cdc2-4ae8-835f-d9495a0bd8b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21R-A010-13 99119fef-cdc2-4ae8-835f-d9495a0bd8b9 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A08X-01A-21R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21R-A010-13 99119fef-cdc2-4ae8-835f-d9495a0bd8b9 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A08X-01A-21R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21W-A019-09 67c7d350-5c82-49b0-a7eb-6ca829ffcbc9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21W-A019-09 67c7d350-5c82-49b0-a7eb-6ca829ffcbc9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21W-A020-08 61dce450-a8d9-4d81-aefc-7b060cbd3187 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21X-A023-09 054ef898-9e53-421b-ac32-12071007578d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08X TCGA-A8-A08X-01A TCGA-A8-A08X-01A-21X-A024-08 1a97f897-4051-4b4f-a224-4a34a445f05b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08X TCGA-A8-A08X-10A TCGA-A8-A08X-10A-01D-A012-01 1009fe4c-6a98-4dfb-8b4d-eca775de4e03 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08X TCGA-A8-A08X-10A TCGA-A8-A08X-10A-01D-A012-01 1009fe4c-6a98-4dfb-8b4d-eca775de4e03 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C06_628550.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A08X TCGA-A8-A08X-10A TCGA-A8-A08X-10A-01D-A012-01 1009fe4c-6a98-4dfb-8b4d-eca775de4e03 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C06_628550.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08X TCGA-A8-A08X-10A TCGA-A8-A08X-10A-01D-A012-01 1009fe4c-6a98-4dfb-8b4d-eca775de4e03 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C06_628550.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08X TCGA-A8-A08X-10A TCGA-A8-A08X-10A-01D-A012-01 1009fe4c-6a98-4dfb-8b4d-eca775de4e03 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C06_628550.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08X TCGA-A8-A08X-10A TCGA-A8-A08X-10A-01D-A012-01 1009fe4c-6a98-4dfb-8b4d-eca775de4e03 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C06_628550.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08X TCGA-A8-A08X-10A TCGA-A8-A08X-10A-01D-A012-01 1009fe4c-6a98-4dfb-8b4d-eca775de4e03 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C06_628550.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08X TCGA-A8-A08X-10A TCGA-A8-A08X-10A-01D-A012-01 1009fe4c-6a98-4dfb-8b4d-eca775de4e03 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C06_628550.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08X TCGA-A8-A08X-10A TCGA-A8-A08X-10A-01D-A012-01 1009fe4c-6a98-4dfb-8b4d-eca775de4e03 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C06_628550.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A08X TCGA-A8-A08X-10A TCGA-A8-A08X-10A-01D-A017-09 8f0a7012-cc3e-4cda-803c-6755de1077e1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08X TCGA-A8-A08X-10A TCGA-A8-A08X-10A-01D-A018-08 523a53ea-8069-439b-b5a4-ef63adda2325 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08X TCGA-A8-A08X-10A TCGA-A8-A08X-10A-01D-A069-02 c5cee038-148c-4258-ab42-9d30a60f1718 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08X TCGA-A8-A08X-10A TCGA-A8-A08X-10A-01W-A021-09 263fb74b-c2f8-4ad7-8b3e-0e02749d167e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08X TCGA-A8-A08X-10A TCGA-A8-A08X-10A-01W-A021-09 263fb74b-c2f8-4ad7-8b3e-0e02749d167e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08X TCGA-A8-A08X-10A TCGA-A8-A08X-10A-01W-A022-08 146d05b7-590d-45dc-b13e-b5f240ec2ba5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08X TCGA-A8-A08X-10A TCGA-A8-A08X-10A-01X-A025-09 7b8d250f-f9d8-46b3-92d9-04ebf6e66a0d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08X TCGA-A8-A08X-10A TCGA-A8-A08X-10A-01X-A026-08 91cbc1c4-826c-4d7f-b18c-7d33d33a4d18 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21D-A00Y-05 61fed873-fdce-4da5-bf58-070527dec83e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21D-A00Y-05 61fed873-fdce-4da5-bf58-070527dec83e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A08Z-01A-21D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21D-A00Y-05 61fed873-fdce-4da5-bf58-070527dec83e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A08Z-01A-21D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21D-A00Y-05 61fed873-fdce-4da5-bf58-070527dec83e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A08Z-01A-21D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21D-A011-01 2b58ea3d-2a6b-4acb-9db2-526ad07551bb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21D-A011-01 2b58ea3d-2a6b-4acb-9db2-526ad07551bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F01_628486.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21D-A011-01 2b58ea3d-2a6b-4acb-9db2-526ad07551bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F01_628486.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21D-A011-01 2b58ea3d-2a6b-4acb-9db2-526ad07551bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F01_628486.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21D-A011-01 2b58ea3d-2a6b-4acb-9db2-526ad07551bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F01_628486.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21D-A011-01 2b58ea3d-2a6b-4acb-9db2-526ad07551bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F01_628486.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21D-A011-01 2b58ea3d-2a6b-4acb-9db2-526ad07551bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F01_628486.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21D-A011-01 2b58ea3d-2a6b-4acb-9db2-526ad07551bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F01_628486.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21D-A011-01 2b58ea3d-2a6b-4acb-9db2-526ad07551bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F01_628486.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21D-A015-09 4e40cb2a-b551-456b-9a93-d11ee7fb0ebb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21D-A016-08 02957ae5-22ed-48d1-8585-476f6f25b10f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21D-A068-02 243478e2-3feb-49e4-89d3-8adb1ba9dc28 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21R-A00Z-07 1462b0a9-6467-4977-aea7-006ea3f5109e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21R-A00Z-07 1462b0a9-6467-4977-aea7-006ea3f5109e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011852_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21R-A00Z-07 1462b0a9-6467-4977-aea7-006ea3f5109e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011852_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21R-A00Z-07 1462b0a9-6467-4977-aea7-006ea3f5109e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011852_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21R-A010-13 4916b0a5-8a7f-48bf-8d00-1ed9f91e58a3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21R-A010-13 4916b0a5-8a7f-48bf-8d00-1ed9f91e58a3 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A08Z-01A-21R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21R-A010-13 4916b0a5-8a7f-48bf-8d00-1ed9f91e58a3 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A08Z-01A-21R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21W-A019-09 96afb6d0-29ea-4bd5-8a9d-130e42954707 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21W-A019-09 96afb6d0-29ea-4bd5-8a9d-130e42954707 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21W-A020-08 01337e66-6c96-483b-8ae6-53cc90510f0c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21X-A023-09 7d854ae1-8d65-496c-8516-e3a4e6087458 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-01A TCGA-A8-A08Z-01A-21X-A024-08 36616785-618c-4702-be6e-36be4f131994 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-10A TCGA-A8-A08Z-10A-01D-A012-01 981a1c59-3601-4354-a2e3-6d21f89ed0aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-10A TCGA-A8-A08Z-10A-01D-A012-01 981a1c59-3601-4354-a2e3-6d21f89ed0aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D03_628488.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A08Z TCGA-A8-A08Z-10A TCGA-A8-A08Z-10A-01D-A012-01 981a1c59-3601-4354-a2e3-6d21f89ed0aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D03_628488.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-10A TCGA-A8-A08Z-10A-01D-A012-01 981a1c59-3601-4354-a2e3-6d21f89ed0aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D03_628488.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-10A TCGA-A8-A08Z-10A-01D-A012-01 981a1c59-3601-4354-a2e3-6d21f89ed0aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D03_628488.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-10A TCGA-A8-A08Z-10A-01D-A012-01 981a1c59-3601-4354-a2e3-6d21f89ed0aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D03_628488.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-10A TCGA-A8-A08Z-10A-01D-A012-01 981a1c59-3601-4354-a2e3-6d21f89ed0aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D03_628488.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-10A TCGA-A8-A08Z-10A-01D-A012-01 981a1c59-3601-4354-a2e3-6d21f89ed0aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D03_628488.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-10A TCGA-A8-A08Z-10A-01D-A012-01 981a1c59-3601-4354-a2e3-6d21f89ed0aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D03_628488.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-10A TCGA-A8-A08Z-10A-01D-A017-09 bceb21f0-abe4-4d5e-bc56-50bd67af9cc6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-10A TCGA-A8-A08Z-10A-01D-A018-08 41f4402c-30d8-40df-9862-0e0c8b710578 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-10A TCGA-A8-A08Z-10A-01D-A069-02 cff1bf8d-8ac9-4cbb-9393-ba4880987258 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-10A TCGA-A8-A08Z-10A-01W-A021-09 35c8c6d8-68b5-4175-9d5b-2859dc94a67a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-10A TCGA-A8-A08Z-10A-01W-A021-09 35c8c6d8-68b5-4175-9d5b-2859dc94a67a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-10A TCGA-A8-A08Z-10A-01W-A022-08 18e6c347-cf52-4e54-bfa4-1db6af1b993a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-10A TCGA-A8-A08Z-10A-01X-A025-09 b90eb862-537e-4029-b3f6-40b6c26ef210 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A08Z TCGA-A8-A08Z-10A TCGA-A8-A08Z-10A-01X-A026-08 afcd9cc3-7025-403e-a64b-208ab71021ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A08Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11D-A00Y-05 db692503-609f-47ea-993b-b576a352dd97 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A090.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11D-A00Y-05 db692503-609f-47ea-993b-b576a352dd97 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A090-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11D-A00Y-05 db692503-609f-47ea-993b-b576a352dd97 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A090-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11D-A00Y-05 db692503-609f-47ea-993b-b576a352dd97 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A090-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11D-A011-01 145a4a31-347b-418f-a5ad-4e77ca35e3ca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A090.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11D-A011-01 145a4a31-347b-418f-a5ad-4e77ca35e3ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C03_628546.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11D-A011-01 145a4a31-347b-418f-a5ad-4e77ca35e3ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C03_628546.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11D-A011-01 145a4a31-347b-418f-a5ad-4e77ca35e3ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C03_628546.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11D-A011-01 145a4a31-347b-418f-a5ad-4e77ca35e3ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C03_628546.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11D-A011-01 145a4a31-347b-418f-a5ad-4e77ca35e3ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C03_628546.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11D-A011-01 145a4a31-347b-418f-a5ad-4e77ca35e3ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C03_628546.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11D-A011-01 145a4a31-347b-418f-a5ad-4e77ca35e3ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C03_628546.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11D-A011-01 145a4a31-347b-418f-a5ad-4e77ca35e3ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C03_628546.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11D-A015-09 dd54cb03-413e-43ba-a598-a8c565854efa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A090.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11D-A016-08 b8d8ed68-7884-4264-a524-f2f603ae8b9f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A090.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11D-A068-02 cf2bbd2f-1783-4123-911e-cf9428d0315f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A090.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11R-A00Z-07 752efa27-8d87-4007-9dc5-baef53b37a87 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A090.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11R-A00Z-07 752efa27-8d87-4007-9dc5-baef53b37a87 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011864_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11R-A00Z-07 752efa27-8d87-4007-9dc5-baef53b37a87 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011864_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11R-A00Z-07 752efa27-8d87-4007-9dc5-baef53b37a87 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011864_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11R-A00Z-07 752efa27-8d87-4007-9dc5-baef53b37a87 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445771.TCGA-A8-A090-01A-11R-A00Z-07.110304_UNC12-SN629_0066_BC0086ABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11R-A00Z-07 752efa27-8d87-4007-9dc5-baef53b37a87 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445779.TCGA-A8-A090-01A-11R-A00Z-07.110304_UNC12-SN629_0066_BC0086ABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11R-A00Z-07 752efa27-8d87-4007-9dc5-baef53b37a87 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445796.TCGA-A8-A090-01A-11R-A00Z-07.110304_UNC12-SN629_0066_BC0086ABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11R-A010-13 38ead8de-76e5-48cb-9e57-e2eae15dc319 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A090.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11R-A010-13 38ead8de-76e5-48cb-9e57-e2eae15dc319 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A090-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11R-A010-13 38ead8de-76e5-48cb-9e57-e2eae15dc319 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A090-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11W-A019-09 783e4c13-8fa5-4591-9453-1e59ca167e10 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A090.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11W-A019-09 783e4c13-8fa5-4591-9453-1e59ca167e10 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11W-A020-08 84d433ed-2793-4af7-9649-c76704657604 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A090.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11X-A023-09 cbb1eb5b-1ab1-4994-9b30-e7f36e7d3f47 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A090.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A090 TCGA-A8-A090-01A TCGA-A8-A090-01A-11X-A024-08 1fb0e078-6870-4da0-bf52-e4b76a17b6a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A090.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A090 TCGA-A8-A090-10A TCGA-A8-A090-10A-01D-A012-01 8fd6b06b-e4f8-47cb-be17-5e635cf2d730 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A090.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A090 TCGA-A8-A090-10A TCGA-A8-A090-10A-01D-A012-01 8fd6b06b-e4f8-47cb-be17-5e635cf2d730 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C02_628518.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A090 TCGA-A8-A090-10A TCGA-A8-A090-10A-01D-A012-01 8fd6b06b-e4f8-47cb-be17-5e635cf2d730 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C02_628518.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A090 TCGA-A8-A090-10A TCGA-A8-A090-10A-01D-A012-01 8fd6b06b-e4f8-47cb-be17-5e635cf2d730 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C02_628518.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A090 TCGA-A8-A090-10A TCGA-A8-A090-10A-01D-A012-01 8fd6b06b-e4f8-47cb-be17-5e635cf2d730 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C02_628518.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A090 TCGA-A8-A090-10A TCGA-A8-A090-10A-01D-A012-01 8fd6b06b-e4f8-47cb-be17-5e635cf2d730 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C02_628518.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A090 TCGA-A8-A090-10A TCGA-A8-A090-10A-01D-A012-01 8fd6b06b-e4f8-47cb-be17-5e635cf2d730 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C02_628518.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A090 TCGA-A8-A090-10A TCGA-A8-A090-10A-01D-A012-01 8fd6b06b-e4f8-47cb-be17-5e635cf2d730 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C02_628518.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A090 TCGA-A8-A090-10A TCGA-A8-A090-10A-01D-A012-01 8fd6b06b-e4f8-47cb-be17-5e635cf2d730 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C02_628518.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A090 TCGA-A8-A090-10A TCGA-A8-A090-10A-01D-A017-09 aa262c57-def5-4f6c-aafc-6a1331e482a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A090.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A090 TCGA-A8-A090-10A TCGA-A8-A090-10A-01D-A018-08 00b6f358-1b1f-4bdf-a41c-a692425c407c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A090.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A090 TCGA-A8-A090-10A TCGA-A8-A090-10A-01D-A069-02 893e5a98-01a4-4fed-8b6e-f12dfbc22bba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A090.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A090 TCGA-A8-A090-10A TCGA-A8-A090-10A-01W-A021-09 26d576f7-f43a-4477-be3b-efd4337b48d7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A090.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A090 TCGA-A8-A090-10A TCGA-A8-A090-10A-01W-A021-09 26d576f7-f43a-4477-be3b-efd4337b48d7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A090 TCGA-A8-A090-10A TCGA-A8-A090-10A-01W-A022-08 6278950d-a65e-4c04-aabc-1a38bb2cbd60 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A090.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A090 TCGA-A8-A090-10A TCGA-A8-A090-10A-01X-A025-09 4c2fb643-8d71-4ebe-bee8-f9b7d4954278 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A090.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A090 TCGA-A8-A090-10A TCGA-A8-A090-10A-01X-A026-08 e9a5692a-2cf9-4581-a30d-f9e2a45554f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A090.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11D-A00Y-05 cf7994e6-36cb-4e69-9fe4-fd021e3c99c3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A091.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11D-A00Y-05 cf7994e6-36cb-4e69-9fe4-fd021e3c99c3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A091-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11D-A00Y-05 cf7994e6-36cb-4e69-9fe4-fd021e3c99c3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A091-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11D-A00Y-05 cf7994e6-36cb-4e69-9fe4-fd021e3c99c3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A091-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11D-A011-01 7cd3f9f8-20a8-468e-aaca-9a49a32d250f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A091.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11D-A011-01 7cd3f9f8-20a8-468e-aaca-9a49a32d250f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A06_628440.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11D-A011-01 7cd3f9f8-20a8-468e-aaca-9a49a32d250f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A06_628440.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11D-A011-01 7cd3f9f8-20a8-468e-aaca-9a49a32d250f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A06_628440.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11D-A011-01 7cd3f9f8-20a8-468e-aaca-9a49a32d250f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A06_628440.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11D-A011-01 7cd3f9f8-20a8-468e-aaca-9a49a32d250f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A06_628440.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11D-A011-01 7cd3f9f8-20a8-468e-aaca-9a49a32d250f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A06_628440.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11D-A011-01 7cd3f9f8-20a8-468e-aaca-9a49a32d250f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A06_628440.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11D-A011-01 7cd3f9f8-20a8-468e-aaca-9a49a32d250f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A06_628440.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11D-A015-09 9e402ebe-eee4-4804-adaf-f0a81d4fcdea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A091.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11D-A016-08 b56268d5-db45-4e87-afde-6c0a5e110254 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A091.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11D-A068-02 a9e1a791-a6e9-4e36-accb-45b5c1ac1584 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A091.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11R-A00Z-07 e43cb8f2-6541-4d55-b11c-8288dcf3b78f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A091.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11R-A00Z-07 e43cb8f2-6541-4d55-b11c-8288dcf3b78f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011878_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11R-A00Z-07 e43cb8f2-6541-4d55-b11c-8288dcf3b78f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011878_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11R-A00Z-07 e43cb8f2-6541-4d55-b11c-8288dcf3b78f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011878_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11R-A00Z-07 e43cb8f2-6541-4d55-b11c-8288dcf3b78f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_602428.TCGA-A8-A091-01A-11R-A00Z-07.111011_UNC12-SN629_0149_AB062VABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11R-A00Z-07 e43cb8f2-6541-4d55-b11c-8288dcf3b78f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_602432.TCGA-A8-A091-01A-11R-A00Z-07.111011_UNC12-SN629_0149_AB062VABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11R-A00Z-07 e43cb8f2-6541-4d55-b11c-8288dcf3b78f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_602561.TCGA-A8-A091-01A-11R-A00Z-07.111011_UNC12-SN629_0149_AB062VABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11R-A010-13 2bc67af7-61f7-47f6-a3fe-8950584303b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A091.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11R-A010-13 2bc67af7-61f7-47f6-a3fe-8950584303b0 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A091-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11R-A010-13 2bc67af7-61f7-47f6-a3fe-8950584303b0 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A091-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11W-A019-09 6618f367-c782-43a0-b5c8-a53d9bda6722 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A091.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11W-A019-09 6618f367-c782-43a0-b5c8-a53d9bda6722 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11W-A020-08 7de83997-b367-47c9-96b6-56a2596ad924 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A091.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11X-A023-09 e9ffdd62-3ecc-451d-805f-24882e9c7a48 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A091.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-01A TCGA-A8-A091-01A-11X-A024-08 2a964e02-9690-4130-b6a8-67d2a6be9d63 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A091.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-10A TCGA-A8-A091-10A-01D-A012-01 a282dc6f-e6b3-4b2a-9f18-e9f3d6da4c1d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A091.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-10A TCGA-A8-A091-10A-01D-A012-01 a282dc6f-e6b3-4b2a-9f18-e9f3d6da4c1d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G01_628418.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-10A TCGA-A8-A091-10A-01D-A012-01 a282dc6f-e6b3-4b2a-9f18-e9f3d6da4c1d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G01_628418.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-10A TCGA-A8-A091-10A-01D-A012-01 a282dc6f-e6b3-4b2a-9f18-e9f3d6da4c1d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G01_628418.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-10A TCGA-A8-A091-10A-01D-A012-01 a282dc6f-e6b3-4b2a-9f18-e9f3d6da4c1d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G01_628418.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-10A TCGA-A8-A091-10A-01D-A012-01 a282dc6f-e6b3-4b2a-9f18-e9f3d6da4c1d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G01_628418.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-10A TCGA-A8-A091-10A-01D-A012-01 a282dc6f-e6b3-4b2a-9f18-e9f3d6da4c1d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G01_628418.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-10A TCGA-A8-A091-10A-01D-A012-01 a282dc6f-e6b3-4b2a-9f18-e9f3d6da4c1d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G01_628418.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-10A TCGA-A8-A091-10A-01D-A012-01 a282dc6f-e6b3-4b2a-9f18-e9f3d6da4c1d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G01_628418.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-10A TCGA-A8-A091-10A-01D-A017-09 07e7c83a-9b18-492c-89ce-9f39b1ecb65d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A091.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-10A TCGA-A8-A091-10A-01D-A018-08 410e11cb-6f54-4f13-9b52-f5f33d8b7c66 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A091.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-10A TCGA-A8-A091-10A-01D-A069-02 f058da15-c4f6-4a20-a1f9-5a7879b18fa9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A091.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-10A TCGA-A8-A091-10A-01W-A021-09 9732d7d3-7a55-4eba-9a18-76e59ca082a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A091.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-10A TCGA-A8-A091-10A-01W-A021-09 9732d7d3-7a55-4eba-9a18-76e59ca082a6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-10A TCGA-A8-A091-10A-01W-A022-08 56d52c47-b395-424b-88ec-a135ef4f2ca6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A091.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-10A TCGA-A8-A091-10A-01X-A025-09 a4fb06d1-6880-4282-bfba-7dee738169e6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A091.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A091 TCGA-A8-A091-10A TCGA-A8-A091-10A-01X-A026-08 8a716312-da6f-45f0-8a29-670fb86ba890 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A091.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11D-A00Y-05 d0b97010-5354-4959-9089-510386b1ba12 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A092.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11D-A00Y-05 d0b97010-5354-4959-9089-510386b1ba12 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A092-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11D-A00Y-05 d0b97010-5354-4959-9089-510386b1ba12 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A092-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11D-A00Y-05 d0b97010-5354-4959-9089-510386b1ba12 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A092-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11D-A011-01 d03b22fa-5bae-4247-a7fa-e8f77e38d8fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A092.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11D-A011-01 d03b22fa-5bae-4247-a7fa-e8f77e38d8fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E11_628412.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11D-A011-01 d03b22fa-5bae-4247-a7fa-e8f77e38d8fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E11_628412.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11D-A011-01 d03b22fa-5bae-4247-a7fa-e8f77e38d8fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E11_628412.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11D-A011-01 d03b22fa-5bae-4247-a7fa-e8f77e38d8fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E11_628412.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11D-A011-01 d03b22fa-5bae-4247-a7fa-e8f77e38d8fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E11_628412.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11D-A011-01 d03b22fa-5bae-4247-a7fa-e8f77e38d8fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E11_628412.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11D-A011-01 d03b22fa-5bae-4247-a7fa-e8f77e38d8fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E11_628412.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11D-A011-01 d03b22fa-5bae-4247-a7fa-e8f77e38d8fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E11_628412.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11D-A015-09 d45b4bac-ae26-4cb9-aad1-e5fcfc942adc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A092.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11D-A016-08 1b34a50f-62c4-43c2-95fa-18a83aca59ea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A092.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11D-A068-02 3a149caf-a585-4d2c-b8f2-62f8af33f04f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A092.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11D-A19H-09 cc4f9175-a8c8-424a-99d7-8bd11cae0e52 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A092.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11R-A00Z-07 98b2b18a-004d-459c-8aba-499d06897910 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A092.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11R-A00Z-07 98b2b18a-004d-459c-8aba-499d06897910 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011890_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11R-A00Z-07 98b2b18a-004d-459c-8aba-499d06897910 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011890_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11R-A00Z-07 98b2b18a-004d-459c-8aba-499d06897910 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011890_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11R-A00Z-07 98b2b18a-004d-459c-8aba-499d06897910 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446447.TCGA-A8-A092-01A-11R-A00Z-07.110225_UNC12-SN629_0063_AB041JABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11R-A00Z-07 98b2b18a-004d-459c-8aba-499d06897910 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446450.TCGA-A8-A092-01A-11R-A00Z-07.110225_UNC12-SN629_0063_AB041JABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11R-A00Z-07 98b2b18a-004d-459c-8aba-499d06897910 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446461.TCGA-A8-A092-01A-11R-A00Z-07.110225_UNC12-SN629_0063_AB041JABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11R-A010-13 32dcdde8-d30c-4004-92e1-3f422ed9246c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A092.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11R-A010-13 32dcdde8-d30c-4004-92e1-3f422ed9246c miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A092-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11R-A010-13 32dcdde8-d30c-4004-92e1-3f422ed9246c miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A092-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11W-A019-09 732dd0ab-c869-4d35-973f-9db064680fb1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A092.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11W-A019-09 732dd0ab-c869-4d35-973f-9db064680fb1 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11W-A020-08 7ca04e9e-9eed-4f53-822e-8d2ec3d9895d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A092.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11X-A023-09 944bdffb-ee14-41d5-85ad-e788f4998f1a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A092.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A092 TCGA-A8-A092-01A TCGA-A8-A092-01A-11X-A024-08 a0e9762b-3a1b-49e1-a52f-5c115c83ab2e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A092.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A092 TCGA-A8-A092-10A TCGA-A8-A092-10A-01D-A012-01 c91844c6-c9bb-4c2f-a066-c1a1a64c67f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A092.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A092 TCGA-A8-A092-10A TCGA-A8-A092-10A-01D-A012-01 c91844c6-c9bb-4c2f-a066-c1a1a64c67f4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D01_628578.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A092 TCGA-A8-A092-10A TCGA-A8-A092-10A-01D-A012-01 c91844c6-c9bb-4c2f-a066-c1a1a64c67f4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D01_628578.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A092 TCGA-A8-A092-10A TCGA-A8-A092-10A-01D-A012-01 c91844c6-c9bb-4c2f-a066-c1a1a64c67f4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D01_628578.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A092 TCGA-A8-A092-10A TCGA-A8-A092-10A-01D-A012-01 c91844c6-c9bb-4c2f-a066-c1a1a64c67f4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D01_628578.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A092 TCGA-A8-A092-10A TCGA-A8-A092-10A-01D-A012-01 c91844c6-c9bb-4c2f-a066-c1a1a64c67f4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D01_628578.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A092 TCGA-A8-A092-10A TCGA-A8-A092-10A-01D-A012-01 c91844c6-c9bb-4c2f-a066-c1a1a64c67f4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D01_628578.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A092 TCGA-A8-A092-10A TCGA-A8-A092-10A-01D-A012-01 c91844c6-c9bb-4c2f-a066-c1a1a64c67f4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D01_628578.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A092 TCGA-A8-A092-10A TCGA-A8-A092-10A-01D-A012-01 c91844c6-c9bb-4c2f-a066-c1a1a64c67f4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D01_628578.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A092 TCGA-A8-A092-10A TCGA-A8-A092-10A-01D-A017-09 f1111f8c-ccf0-49ab-be58-2c663b374601 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A092.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A092 TCGA-A8-A092-10A TCGA-A8-A092-10A-01D-A018-08 760f8f20-53c3-452e-bdeb-ab35df227dd1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A092.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A092 TCGA-A8-A092-10A TCGA-A8-A092-10A-01D-A069-02 57870e51-a6c5-43d0-ab6b-088941b9dde1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A092.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A092 TCGA-A8-A092-10A TCGA-A8-A092-10A-01D-A19H-09 c9fe2d18-b298-46ea-ba31-a87e42e790cd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A092.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A092 TCGA-A8-A092-10A TCGA-A8-A092-10A-01W-A021-09 40550f2e-0413-4ddf-85e3-edce4f47f62e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A092.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A092 TCGA-A8-A092-10A TCGA-A8-A092-10A-01W-A021-09 40550f2e-0413-4ddf-85e3-edce4f47f62e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A092 TCGA-A8-A092-10A TCGA-A8-A092-10A-01W-A022-08 531fd084-8815-4190-8b6a-a0143ab4db04 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A092.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A092 TCGA-A8-A092-10A TCGA-A8-A092-10A-01X-A025-09 068a88d2-e564-4488-9b16-9c4a1c321e12 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A092.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A092 TCGA-A8-A092-10A TCGA-A8-A092-10A-01X-A026-08 06dc64af-8f8d-4d1a-a04c-c52b9ee096c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A092.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11D-A00Y-05 835e0565-f366-4c50-b888-bc24bf304eeb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A093.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11D-A00Y-05 835e0565-f366-4c50-b888-bc24bf304eeb DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A093-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11D-A00Y-05 835e0565-f366-4c50-b888-bc24bf304eeb DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A093-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11D-A00Y-05 835e0565-f366-4c50-b888-bc24bf304eeb DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A093-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11D-A011-01 66c6efd3-406c-4b96-ac62-b570d161c825 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A093.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11D-A011-01 66c6efd3-406c-4b96-ac62-b570d161c825 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E02_628526.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11D-A011-01 66c6efd3-406c-4b96-ac62-b570d161c825 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E02_628526.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11D-A011-01 66c6efd3-406c-4b96-ac62-b570d161c825 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E02_628526.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11D-A011-01 66c6efd3-406c-4b96-ac62-b570d161c825 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E02_628526.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11D-A011-01 66c6efd3-406c-4b96-ac62-b570d161c825 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E02_628526.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11D-A011-01 66c6efd3-406c-4b96-ac62-b570d161c825 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E02_628526.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11D-A011-01 66c6efd3-406c-4b96-ac62-b570d161c825 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E02_628526.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11D-A011-01 66c6efd3-406c-4b96-ac62-b570d161c825 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E02_628526.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11D-A015-09 c4f4ef14-a735-475f-b42a-b528b2e5eeb8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A093.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11D-A016-08 ff12f05f-980d-40eb-b7d6-f16cda4823c0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A093.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11D-A068-02 5ace1493-1d52-419a-8e71-66c4854b177a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A093.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11R-A00Z-07 54d372bf-07c8-4525-a081-ff26c28aff39 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A093.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11R-A00Z-07 54d372bf-07c8-4525-a081-ff26c28aff39 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012022_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11R-A00Z-07 54d372bf-07c8-4525-a081-ff26c28aff39 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012022_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11R-A00Z-07 54d372bf-07c8-4525-a081-ff26c28aff39 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012022_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11R-A00Z-07 54d372bf-07c8-4525-a081-ff26c28aff39 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445509.TCGA-A8-A093-01A-11R-A00Z-07.110310_UNC12-SN629_0069_AB05L5ABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11R-A00Z-07 54d372bf-07c8-4525-a081-ff26c28aff39 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445513.TCGA-A8-A093-01A-11R-A00Z-07.110310_UNC12-SN629_0069_AB05L5ABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11R-A00Z-07 54d372bf-07c8-4525-a081-ff26c28aff39 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445556.TCGA-A8-A093-01A-11R-A00Z-07.110310_UNC12-SN629_0069_AB05L5ABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11R-A010-13 2c2971e2-f0df-4a41-a507-3c8d76633e0c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A093.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11R-A010-13 2c2971e2-f0df-4a41-a507-3c8d76633e0c miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A093-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11R-A010-13 2c2971e2-f0df-4a41-a507-3c8d76633e0c miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A093-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11W-A019-09 8f64ba22-0958-4fdb-8161-f83cfe57c95d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A093.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11W-A019-09 8f64ba22-0958-4fdb-8161-f83cfe57c95d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11W-A020-08 f8d1842e-40f2-4254-9bed-f921006bcd5b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A093.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11X-A023-09 bdeabd46-da9d-408e-8533-25b48458b1db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A093.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-01A TCGA-A8-A093-01A-11X-A024-08 00be7a5c-ffe3-447f-a060-81bb49954791 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A093.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-10A TCGA-A8-A093-10A-01D-A012-01 5503cca6-1192-46d6-a8c9-e391f053757b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A093.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-10A TCGA-A8-A093-10A-01D-A012-01 5503cca6-1192-46d6-a8c9-e391f053757b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H02_628426.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-10A TCGA-A8-A093-10A-01D-A012-01 5503cca6-1192-46d6-a8c9-e391f053757b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H02_628426.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-10A TCGA-A8-A093-10A-01D-A012-01 5503cca6-1192-46d6-a8c9-e391f053757b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H02_628426.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-10A TCGA-A8-A093-10A-01D-A012-01 5503cca6-1192-46d6-a8c9-e391f053757b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H02_628426.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-10A TCGA-A8-A093-10A-01D-A012-01 5503cca6-1192-46d6-a8c9-e391f053757b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H02_628426.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-10A TCGA-A8-A093-10A-01D-A012-01 5503cca6-1192-46d6-a8c9-e391f053757b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H02_628426.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-10A TCGA-A8-A093-10A-01D-A012-01 5503cca6-1192-46d6-a8c9-e391f053757b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H02_628426.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-10A TCGA-A8-A093-10A-01D-A012-01 5503cca6-1192-46d6-a8c9-e391f053757b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H02_628426.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-10A TCGA-A8-A093-10A-01D-A017-09 37e35e6f-0854-440c-8919-bf72fce1af35 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A093.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-10A TCGA-A8-A093-10A-01D-A018-08 a58bcf33-ae1f-44a0-95f6-5f3c05a4876d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A093.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-10A TCGA-A8-A093-10A-01D-A069-02 c106acf0-acf0-4283-b869-b49fa4651c39 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A093.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-10A TCGA-A8-A093-10A-01W-A021-09 4f97de65-e2ea-444d-b824-70905e5059c2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A093.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-10A TCGA-A8-A093-10A-01W-A021-09 4f97de65-e2ea-444d-b824-70905e5059c2 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-10A TCGA-A8-A093-10A-01W-A022-08 4f080f0f-dec3-40b4-b234-03f2c5c89e73 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A093.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-10A TCGA-A8-A093-10A-01X-A025-09 f4d91126-882e-4f42-a960-fa8c278437d8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A093.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A093 TCGA-A8-A093-10A TCGA-A8-A093-10A-01X-A026-08 cfe841da-d04f-484b-a0ff-8fb361b3474e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A093.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11D-A00Y-05 6ef5b957-f13a-4e4a-85ec-122608498515 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A094.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11D-A00Y-05 6ef5b957-f13a-4e4a-85ec-122608498515 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A094-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11D-A00Y-05 6ef5b957-f13a-4e4a-85ec-122608498515 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A094-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11D-A00Y-05 6ef5b957-f13a-4e4a-85ec-122608498515 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A094-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11D-A011-01 deedcd96-88fd-445e-bc6c-085c79a431ab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A094.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11D-A011-01 deedcd96-88fd-445e-bc6c-085c79a431ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H03_628502.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11D-A011-01 deedcd96-88fd-445e-bc6c-085c79a431ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H03_628502.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11D-A011-01 deedcd96-88fd-445e-bc6c-085c79a431ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H03_628502.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11D-A011-01 deedcd96-88fd-445e-bc6c-085c79a431ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H03_628502.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11D-A011-01 deedcd96-88fd-445e-bc6c-085c79a431ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H03_628502.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11D-A011-01 deedcd96-88fd-445e-bc6c-085c79a431ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H03_628502.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11D-A011-01 deedcd96-88fd-445e-bc6c-085c79a431ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H03_628502.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11D-A011-01 deedcd96-88fd-445e-bc6c-085c79a431ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H03_628502.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11D-A015-09 bb70728e-8b5b-4bc2-81fd-d7014eaf1ec6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A094.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11D-A016-08 c2a2ff57-a69e-4e4c-8f58-ec35b8b3bbeb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A094.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11D-A068-02 5e06a5de-cf9b-4efd-8c99-716d252575db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A094.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11D-A19H-09 db45d81f-695c-4f99-beea-6dbec1ff47fc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A094.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11R-A00Z-07 877adc79-0651-4140-bb6a-876162733bf3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A094.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11R-A00Z-07 877adc79-0651-4140-bb6a-876162733bf3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011820_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11R-A00Z-07 877adc79-0651-4140-bb6a-876162733bf3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011820_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11R-A00Z-07 877adc79-0651-4140-bb6a-876162733bf3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011820_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11R-A00Z-07 877adc79-0651-4140-bb6a-876162733bf3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_533795.TCGA-A8-A094-01A-11R-A00Z-07.110209_SN627_0058_B81DH0ABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11R-A00Z-07 877adc79-0651-4140-bb6a-876162733bf3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_533797.TCGA-A8-A094-01A-11R-A00Z-07.110209_SN627_0058_B81DH0ABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11R-A00Z-07 877adc79-0651-4140-bb6a-876162733bf3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_533802.TCGA-A8-A094-01A-11R-A00Z-07.110209_SN627_0058_B81DH0ABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11R-A010-13 2730173a-85f7-4170-aea2-b40f30253e53 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A094.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11R-A038-13 e9c93245-a5d4-4a4c-ac9a-c2002313b4a5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A094.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11R-A038-13 e9c93245-a5d4-4a4c-ac9a-c2002313b4a5 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A094-01A-11R-A038-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11R-A038-13 e9c93245-a5d4-4a4c-ac9a-c2002313b4a5 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A094-01A-11R-A038-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11W-A019-09 ab9bf7a6-688e-4388-9682-6b1616723fde Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A094.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11W-A019-09 ab9bf7a6-688e-4388-9682-6b1616723fde Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 47 22-JUL-11 04.53.19.115000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11W-A019-09 ab9bf7a6-688e-4388-9682-6b1616723fde Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11W-A020-08 4d75b87c-2167-45fa-9399-608ea85cc452 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A094.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11X-A023-09 00f0dea2-9444-4308-8748-efc385d66e62 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A094.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A094 TCGA-A8-A094-01A TCGA-A8-A094-01A-11X-A024-08 b4fe0482-b67f-4e82-bd0b-4c1904f9a24d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A094.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A094 TCGA-A8-A094-10A TCGA-A8-A094-10A-01D-A012-01 5758ecfd-f6f0-47c5-a90a-bdf6feffcd0a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A094.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A094 TCGA-A8-A094-10A TCGA-A8-A094-10A-01D-A012-01 5758ecfd-f6f0-47c5-a90a-bdf6feffcd0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A07_628480.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A094 TCGA-A8-A094-10A TCGA-A8-A094-10A-01D-A012-01 5758ecfd-f6f0-47c5-a90a-bdf6feffcd0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A07_628480.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A094 TCGA-A8-A094-10A TCGA-A8-A094-10A-01D-A012-01 5758ecfd-f6f0-47c5-a90a-bdf6feffcd0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A07_628480.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A094 TCGA-A8-A094-10A TCGA-A8-A094-10A-01D-A012-01 5758ecfd-f6f0-47c5-a90a-bdf6feffcd0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A07_628480.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A094 TCGA-A8-A094-10A TCGA-A8-A094-10A-01D-A012-01 5758ecfd-f6f0-47c5-a90a-bdf6feffcd0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A07_628480.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A094 TCGA-A8-A094-10A TCGA-A8-A094-10A-01D-A012-01 5758ecfd-f6f0-47c5-a90a-bdf6feffcd0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A07_628480.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A094 TCGA-A8-A094-10A TCGA-A8-A094-10A-01D-A012-01 5758ecfd-f6f0-47c5-a90a-bdf6feffcd0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A07_628480.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A094 TCGA-A8-A094-10A TCGA-A8-A094-10A-01D-A012-01 5758ecfd-f6f0-47c5-a90a-bdf6feffcd0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A07_628480.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A094 TCGA-A8-A094-10A TCGA-A8-A094-10A-01D-A017-09 f489fada-2882-477d-87eb-d59321579367 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A094.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A094 TCGA-A8-A094-10A TCGA-A8-A094-10A-01D-A018-08 c34d987d-3892-489e-b63b-499724bad595 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A094.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A094 TCGA-A8-A094-10A TCGA-A8-A094-10A-01D-A069-02 8c277479-af8e-4cb6-a602-07ca85c105e5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A094.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A094 TCGA-A8-A094-10A TCGA-A8-A094-10A-01D-A19H-09 e45c007a-e0e6-454c-9804-9d72ff7378fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A094.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A094 TCGA-A8-A094-10A TCGA-A8-A094-10A-01W-A021-09 81550760-c58d-4ae7-90eb-9a436d664442 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A094.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A094 TCGA-A8-A094-10A TCGA-A8-A094-10A-01W-A021-09 81550760-c58d-4ae7-90eb-9a436d664442 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 47 22-JUL-11 04.53.19.115000000 PM TCGA-A8-A094 TCGA-A8-A094-10A TCGA-A8-A094-10A-01W-A021-09 81550760-c58d-4ae7-90eb-9a436d664442 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A094 TCGA-A8-A094-10A TCGA-A8-A094-10A-01W-A022-08 df78e14c-8b96-40a6-a705-d8b2e89f889d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A094.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A094 TCGA-A8-A094-10A TCGA-A8-A094-10A-01X-A025-09 7c4e5ece-7e3a-45d2-ba95-43ffe84deaca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A094.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A094 TCGA-A8-A094-10A TCGA-A8-A094-10A-01X-A026-08 1bee0917-abfb-420f-8ecb-1ecf044a5f21 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A094.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11D-A00Y-05 6c8c1725-2650-4b3d-a881-4d8480d2aa7e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A095.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11D-A00Y-05 6c8c1725-2650-4b3d-a881-4d8480d2aa7e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A095-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11D-A00Y-05 6c8c1725-2650-4b3d-a881-4d8480d2aa7e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A095-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11D-A00Y-05 6c8c1725-2650-4b3d-a881-4d8480d2aa7e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A095-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11D-A011-01 8bb0471f-9d25-4c27-9a4c-ecc00090a7da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A095.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11D-A011-01 8bb0471f-9d25-4c27-9a4c-ecc00090a7da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H05_628424.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11D-A011-01 8bb0471f-9d25-4c27-9a4c-ecc00090a7da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H05_628424.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11D-A011-01 8bb0471f-9d25-4c27-9a4c-ecc00090a7da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H05_628424.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11D-A011-01 8bb0471f-9d25-4c27-9a4c-ecc00090a7da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H05_628424.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11D-A011-01 8bb0471f-9d25-4c27-9a4c-ecc00090a7da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H05_628424.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11D-A011-01 8bb0471f-9d25-4c27-9a4c-ecc00090a7da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H05_628424.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11D-A011-01 8bb0471f-9d25-4c27-9a4c-ecc00090a7da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H05_628424.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11D-A011-01 8bb0471f-9d25-4c27-9a4c-ecc00090a7da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H05_628424.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11D-A015-09 107c3ae3-93ac-4078-8d91-caacb7ff4bd1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A095.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11D-A016-08 4ffb3ce5-f930-412c-9289-d13894c2ef98 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A095.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11D-A068-02 080333aa-d08d-4490-b2d1-90c5998289e3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A095.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11R-A00Z-07 c943873c-e153-42bc-a8de-e1080b252e81 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A095.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11R-A00Z-07 c943873c-e153-42bc-a8de-e1080b252e81 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011811_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11R-A00Z-07 c943873c-e153-42bc-a8de-e1080b252e81 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011811_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11R-A00Z-07 c943873c-e153-42bc-a8de-e1080b252e81 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011811_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11R-A00Z-07 c943873c-e153-42bc-a8de-e1080b252e81 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_674841.TCGA-A8-A095-01A-11R-A00Z-07.111111_UNC14-SN744_0187_BC0565ABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11R-A00Z-07 c943873c-e153-42bc-a8de-e1080b252e81 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_674875.TCGA-A8-A095-01A-11R-A00Z-07.111111_UNC14-SN744_0187_BC0565ABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11R-A00Z-07 c943873c-e153-42bc-a8de-e1080b252e81 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_674972.TCGA-A8-A095-01A-11R-A00Z-07.111111_UNC14-SN744_0187_BC0565ABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11R-A010-13 35c83967-3afd-4a07-a0d7-8aecff6f0f50 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A095.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11R-A010-13 35c83967-3afd-4a07-a0d7-8aecff6f0f50 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A095-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11R-A010-13 35c83967-3afd-4a07-a0d7-8aecff6f0f50 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A095-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11W-A019-09 d16f025a-4187-4632-b833-02a3ffa54210 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A095.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11W-A019-09 d16f025a-4187-4632-b833-02a3ffa54210 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 47 22-JUL-11 04.53.19.115000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11W-A019-09 d16f025a-4187-4632-b833-02a3ffa54210 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11W-A020-08 94d77a00-5648-4440-b655-db3d5441de85 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A095.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11X-A023-09 ba13e935-0ab7-4e86-94e8-933b7bdeac4c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A095.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A095 TCGA-A8-A095-01A TCGA-A8-A095-01A-11X-A024-08 77a2177a-4f3b-42e7-9ac1-f48890ee6e59 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A095.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A095 TCGA-A8-A095-10A TCGA-A8-A095-10A-01D-A012-01 5b354ba0-d2f1-4ada-b203-fb4175afeacd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A095.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A095 TCGA-A8-A095-10A TCGA-A8-A095-10A-01D-A012-01 5b354ba0-d2f1-4ada-b203-fb4175afeacd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B03_628532.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A095 TCGA-A8-A095-10A TCGA-A8-A095-10A-01D-A012-01 5b354ba0-d2f1-4ada-b203-fb4175afeacd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B03_628532.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A095 TCGA-A8-A095-10A TCGA-A8-A095-10A-01D-A012-01 5b354ba0-d2f1-4ada-b203-fb4175afeacd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B03_628532.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A095 TCGA-A8-A095-10A TCGA-A8-A095-10A-01D-A012-01 5b354ba0-d2f1-4ada-b203-fb4175afeacd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B03_628532.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A095 TCGA-A8-A095-10A TCGA-A8-A095-10A-01D-A012-01 5b354ba0-d2f1-4ada-b203-fb4175afeacd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B03_628532.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A095 TCGA-A8-A095-10A TCGA-A8-A095-10A-01D-A012-01 5b354ba0-d2f1-4ada-b203-fb4175afeacd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B03_628532.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A095 TCGA-A8-A095-10A TCGA-A8-A095-10A-01D-A012-01 5b354ba0-d2f1-4ada-b203-fb4175afeacd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B03_628532.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A095 TCGA-A8-A095-10A TCGA-A8-A095-10A-01D-A012-01 5b354ba0-d2f1-4ada-b203-fb4175afeacd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B03_628532.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A095 TCGA-A8-A095-10A TCGA-A8-A095-10A-01D-A017-09 50f118ff-cee3-4c51-942a-fc61b161c985 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A095.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A095 TCGA-A8-A095-10A TCGA-A8-A095-10A-01D-A018-08 19007942-ef2c-44cd-85db-6c176ee90109 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A095.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A095 TCGA-A8-A095-10A TCGA-A8-A095-10A-01D-A069-02 8d843f7a-a26a-4a43-929b-9f11582cf204 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A095.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A095 TCGA-A8-A095-10A TCGA-A8-A095-10A-01W-A021-09 9dafa22c-39df-467b-920b-a1e42c820671 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A095.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A095 TCGA-A8-A095-10A TCGA-A8-A095-10A-01W-A021-09 9dafa22c-39df-467b-920b-a1e42c820671 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 47 22-JUL-11 04.53.19.115000000 PM TCGA-A8-A095 TCGA-A8-A095-10A TCGA-A8-A095-10A-01W-A021-09 9dafa22c-39df-467b-920b-a1e42c820671 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A095 TCGA-A8-A095-10A TCGA-A8-A095-10A-01W-A022-08 d30c802b-19a9-45a7-acf4-0eb74b5f8dd2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A095.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A095 TCGA-A8-A095-10A TCGA-A8-A095-10A-01X-A025-09 5cdf91dc-78f4-4a08-8352-b114d5c31916 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A095.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A095 TCGA-A8-A095-10A TCGA-A8-A095-10A-01X-A026-08 6ef8e64b-829e-49b8-845d-50840400b23a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A095.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11D-A00Y-05 9a54fd35-b28f-449a-b53d-3827797cba38 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A096.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11D-A00Y-05 9a54fd35-b28f-449a-b53d-3827797cba38 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A096-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11D-A00Y-05 9a54fd35-b28f-449a-b53d-3827797cba38 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A096-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11D-A00Y-05 9a54fd35-b28f-449a-b53d-3827797cba38 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A096-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11D-A011-01 b9f519b1-a3ef-48a2-8a66-fe83096ef611 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A096.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11D-A011-01 b9f519b1-a3ef-48a2-8a66-fe83096ef611 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F07_628408.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11D-A011-01 b9f519b1-a3ef-48a2-8a66-fe83096ef611 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F07_628408.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11D-A011-01 b9f519b1-a3ef-48a2-8a66-fe83096ef611 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F07_628408.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11D-A011-01 b9f519b1-a3ef-48a2-8a66-fe83096ef611 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F07_628408.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11D-A011-01 b9f519b1-a3ef-48a2-8a66-fe83096ef611 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F07_628408.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11D-A011-01 b9f519b1-a3ef-48a2-8a66-fe83096ef611 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F07_628408.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11D-A011-01 b9f519b1-a3ef-48a2-8a66-fe83096ef611 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F07_628408.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11D-A011-01 b9f519b1-a3ef-48a2-8a66-fe83096ef611 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F07_628408.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11D-A015-09 b7843e7c-12f7-4212-bd82-229f86695d94 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A096.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11D-A016-08 541a4129-fd28-4441-9feb-ec4b1cdd1ef7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A096.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11D-A068-02 9b681ad7-7b24-4d5d-8d1e-92699ebc0b1b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A096.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11R-A00Z-07 7bf79330-52fa-4111-88fe-b3ea62bcc63a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A096.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11R-A00Z-07 7bf79330-52fa-4111-88fe-b3ea62bcc63a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011835_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11R-A00Z-07 7bf79330-52fa-4111-88fe-b3ea62bcc63a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011835_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11R-A00Z-07 7bf79330-52fa-4111-88fe-b3ea62bcc63a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011835_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11R-A010-13 59146e10-54ee-4bf8-93ea-80961317c42c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A096.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11R-A038-13 34fbdc01-d318-4fd5-abc6-27cd097220d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A096.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11R-A038-13 34fbdc01-d318-4fd5-abc6-27cd097220d6 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A096-01A-11R-A038-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11R-A038-13 34fbdc01-d318-4fd5-abc6-27cd097220d6 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A096-01A-11R-A038-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11W-A019-09 8a411a0a-ec66-4d9f-b0e4-f1c1f969d605 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A096.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11W-A019-09 8a411a0a-ec66-4d9f-b0e4-f1c1f969d605 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 47 22-JUL-11 04.53.19.115000000 PM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11W-A019-09 8a411a0a-ec66-4d9f-b0e4-f1c1f969d605 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11W-A020-08 5d2f6c19-f116-406f-bb36-f936a9c1675b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A096.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11X-A023-09 5c15d137-7b42-4d7f-9d2a-6009df49a668 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A096.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A096 TCGA-A8-A096-01A TCGA-A8-A096-01A-11X-A024-08 0e31138e-af94-40ba-b2dd-a1faead1df63 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A096.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A096 TCGA-A8-A096-10A TCGA-A8-A096-10A-01D-A012-01 14fcb503-6e74-444b-b410-75b2b3dac175 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A096.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A096 TCGA-A8-A096-10A TCGA-A8-A096-10A-01D-A012-01 14fcb503-6e74-444b-b410-75b2b3dac175 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C07_628576.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A096 TCGA-A8-A096-10A TCGA-A8-A096-10A-01D-A012-01 14fcb503-6e74-444b-b410-75b2b3dac175 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C07_628576.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A096 TCGA-A8-A096-10A TCGA-A8-A096-10A-01D-A012-01 14fcb503-6e74-444b-b410-75b2b3dac175 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C07_628576.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A096 TCGA-A8-A096-10A TCGA-A8-A096-10A-01D-A012-01 14fcb503-6e74-444b-b410-75b2b3dac175 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C07_628576.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A096 TCGA-A8-A096-10A TCGA-A8-A096-10A-01D-A012-01 14fcb503-6e74-444b-b410-75b2b3dac175 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C07_628576.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A096 TCGA-A8-A096-10A TCGA-A8-A096-10A-01D-A012-01 14fcb503-6e74-444b-b410-75b2b3dac175 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C07_628576.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A096 TCGA-A8-A096-10A TCGA-A8-A096-10A-01D-A012-01 14fcb503-6e74-444b-b410-75b2b3dac175 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C07_628576.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A096 TCGA-A8-A096-10A TCGA-A8-A096-10A-01D-A012-01 14fcb503-6e74-444b-b410-75b2b3dac175 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C07_628576.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A096 TCGA-A8-A096-10A TCGA-A8-A096-10A-01D-A017-09 15a874bc-efcd-47b7-af3f-4a529a29aa70 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A096.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A096 TCGA-A8-A096-10A TCGA-A8-A096-10A-01D-A018-08 7f96bef0-1648-486e-ab0f-bf9d6e255872 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A096.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A096 TCGA-A8-A096-10A TCGA-A8-A096-10A-01D-A069-02 310924fb-4d59-4e5b-89cc-fb353061781e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A096.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A096 TCGA-A8-A096-10A TCGA-A8-A096-10A-01W-A021-09 6fc71cee-3a74-4d03-ac3c-da56af94dab7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A096.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A096 TCGA-A8-A096-10A TCGA-A8-A096-10A-01W-A021-09 6fc71cee-3a74-4d03-ac3c-da56af94dab7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 47 22-JUL-11 04.53.19.115000000 PM TCGA-A8-A096 TCGA-A8-A096-10A TCGA-A8-A096-10A-01W-A021-09 6fc71cee-3a74-4d03-ac3c-da56af94dab7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A096 TCGA-A8-A096-10A TCGA-A8-A096-10A-01W-A022-08 b2f4906f-b979-4dcc-9c33-37fdd6691f14 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A096.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A096 TCGA-A8-A096-10A TCGA-A8-A096-10A-01X-A025-09 63735f82-9ab0-45f8-b444-51467017538e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A096.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A096 TCGA-A8-A096-10A TCGA-A8-A096-10A-01X-A026-08 c53b9460-cdb4-4f21-99ac-8ce2dd8813ee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A096.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11D-A032-05 e7b903f5-060e-4366-a349-673b6016bb33 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A097.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11D-A032-05 e7b903f5-060e-4366-a349-673b6016bb33 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A8-A097-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11D-A032-05 e7b903f5-060e-4366-a349-673b6016bb33 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A8-A097-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11D-A032-05 e7b903f5-060e-4366-a349-673b6016bb33 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A8-A097-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11D-A033-02 7b016aa1-1489-4297-81b0-1b83855f8ce0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A097.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11D-A036-01 efbe880f-55bf-4c85-b30c-902c44578821 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A097.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11D-A036-01 efbe880f-55bf-4c85-b30c-902c44578821 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F10_666994.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11D-A036-01 efbe880f-55bf-4c85-b30c-902c44578821 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F10_666994.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11D-A036-01 efbe880f-55bf-4c85-b30c-902c44578821 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F10_666994.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11D-A036-01 efbe880f-55bf-4c85-b30c-902c44578821 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F10_666994.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11D-A036-01 efbe880f-55bf-4c85-b30c-902c44578821 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F10_666994.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11D-A036-01 efbe880f-55bf-4c85-b30c-902c44578821 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F10_666994.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11D-A036-01 efbe880f-55bf-4c85-b30c-902c44578821 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F10_666994.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11D-A036-01 efbe880f-55bf-4c85-b30c-902c44578821 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F10_666994.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11D-A044-08 b66d311a-4591-4d5a-ab3b-6b6bc9d456b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A097.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11D-A045-09 d94c7b6c-a5e6-4c9b-b3f5-6fa9f8dc3466 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A097.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11R-A034-07 1873a785-0f15-40ef-a7c9-1799ab482338 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A097.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11R-A034-07 1873a785-0f15-40ef-a7c9-1799ab482338 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012026_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11R-A034-07 1873a785-0f15-40ef-a7c9-1799ab482338 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012026_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11R-A034-07 1873a785-0f15-40ef-a7c9-1799ab482338 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012026_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11R-A034-07 1873a785-0f15-40ef-a7c9-1799ab482338 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_657199.TCGA-A8-A097-01A-11R-A034-07.110302_UNC11-SN627_0066_AB047KABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11R-A034-07 1873a785-0f15-40ef-a7c9-1799ab482338 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_657200.TCGA-A8-A097-01A-11R-A034-07.110302_UNC11-SN627_0066_AB047KABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11R-A034-07 1873a785-0f15-40ef-a7c9-1799ab482338 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_657398.TCGA-A8-A097-01A-11R-A034-07.110302_UNC11-SN627_0066_AB047KABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11R-A035-13 1fc148be-a05d-4ba7-b842-1502fbac7c4e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A097.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11R-A035-13 1fc148be-a05d-4ba7-b842-1502fbac7c4e miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A097-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11R-A035-13 1fc148be-a05d-4ba7-b842-1502fbac7c4e miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A097-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11W-A050-09 15ca7c47-131a-4dd7-b0a7-584577b4b02c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A097.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11W-A050-09 15ca7c47-131a-4dd7-b0a7-584577b4b02c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11W-A051-08 4e4f89b1-01fc-4ac3-a929-ee2e0dbee184 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A097.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11X-A048-08 7f975be4-cedb-46c5-9cc4-b93a466d3d5c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A097.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A097 TCGA-A8-A097-01A TCGA-A8-A097-01A-11X-A049-09 cea09569-0346-4439-aa2e-828bd706c0a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A097.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A097 TCGA-A8-A097-10A TCGA-A8-A097-10A-01D-A031-02 95b54f95-041a-4be6-bf7c-e7131eb6cc1f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A097.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A097 TCGA-A8-A097-10A TCGA-A8-A097-10A-01D-A037-01 e4e1ef55-2c89-4cab-b0c6-2ab2a7dbf6d7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A097.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A097 TCGA-A8-A097-10A TCGA-A8-A097-10A-01D-A037-01 e4e1ef55-2c89-4cab-b0c6-2ab2a7dbf6d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F08_666890.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A8-A097 TCGA-A8-A097-10A TCGA-A8-A097-10A-01D-A037-01 e4e1ef55-2c89-4cab-b0c6-2ab2a7dbf6d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F08_666890.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A097 TCGA-A8-A097-10A TCGA-A8-A097-10A-01D-A037-01 e4e1ef55-2c89-4cab-b0c6-2ab2a7dbf6d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F08_666890.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A097 TCGA-A8-A097-10A TCGA-A8-A097-10A-01D-A037-01 e4e1ef55-2c89-4cab-b0c6-2ab2a7dbf6d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F08_666890.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A097 TCGA-A8-A097-10A TCGA-A8-A097-10A-01D-A037-01 e4e1ef55-2c89-4cab-b0c6-2ab2a7dbf6d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F08_666890.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A097 TCGA-A8-A097-10A TCGA-A8-A097-10A-01D-A037-01 e4e1ef55-2c89-4cab-b0c6-2ab2a7dbf6d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F08_666890.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A097 TCGA-A8-A097-10A TCGA-A8-A097-10A-01D-A037-01 e4e1ef55-2c89-4cab-b0c6-2ab2a7dbf6d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F08_666890.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A097 TCGA-A8-A097-10A TCGA-A8-A097-10A-01D-A037-01 e4e1ef55-2c89-4cab-b0c6-2ab2a7dbf6d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F08_666890.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A8-A097 TCGA-A8-A097-10A TCGA-A8-A097-10A-01D-A046-08 b7305d73-9384-4f13-b32a-74cea142ae5d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A097.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A097 TCGA-A8-A097-10A TCGA-A8-A097-10A-01D-A047-09 c83a2793-64cb-4b8a-a9ab-8b086e307aeb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A097.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A097 TCGA-A8-A097-10A TCGA-A8-A097-10A-01D-A047-09 c83a2793-64cb-4b8a-a9ab-8b086e307aeb Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A097 TCGA-A8-A097-10A TCGA-A8-A097-10A-01W-A053-08 df517079-60a3-4986-b1e8-ee2ba0b07bbe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A097.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A097 TCGA-A8-A097-10A TCGA-A8-A097-10A-01W-A055-09 77a79305-a66a-4555-b122-981e845d54d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A097.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A097 TCGA-A8-A097-10A TCGA-A8-A097-10A-01X-A052-08 5dbbf045-8403-412b-a040-135a7f9c6164 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A097.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A097 TCGA-A8-A097-10A TCGA-A8-A097-10A-01X-A054-09 2fd2e6ae-cef2-44b2-af7b-ef3b11eabfbf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A097.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11D-A00Y-05 8037eac3-7e1c-4ba8-b1a8-f252e3c03454 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A099.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11D-A00Y-05 8037eac3-7e1c-4ba8-b1a8-f252e3c03454 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A099-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11D-A00Y-05 8037eac3-7e1c-4ba8-b1a8-f252e3c03454 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A099-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11D-A00Y-05 8037eac3-7e1c-4ba8-b1a8-f252e3c03454 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A099-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11D-A011-01 e7d3f302-d068-487a-b1cf-89cf4d9f6f60 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A099.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11D-A011-01 e7d3f302-d068-487a-b1cf-89cf4d9f6f60 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G02_628468.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11D-A011-01 e7d3f302-d068-487a-b1cf-89cf4d9f6f60 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G02_628468.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11D-A011-01 e7d3f302-d068-487a-b1cf-89cf4d9f6f60 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G02_628468.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11D-A011-01 e7d3f302-d068-487a-b1cf-89cf4d9f6f60 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G02_628468.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11D-A011-01 e7d3f302-d068-487a-b1cf-89cf4d9f6f60 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G02_628468.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11D-A011-01 e7d3f302-d068-487a-b1cf-89cf4d9f6f60 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G02_628468.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11D-A011-01 e7d3f302-d068-487a-b1cf-89cf4d9f6f60 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G02_628468.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11D-A011-01 e7d3f302-d068-487a-b1cf-89cf4d9f6f60 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G02_628468.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11D-A015-09 8ba81413-6bfd-4884-addc-4dc1adb83300 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A099.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11D-A016-08 752941d4-4255-4e32-ab39-045269865446 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A099.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11D-A068-02 2c62e989-7f38-49ef-b829-db6e4930d364 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A099.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11R-A00Z-07 09d1b9e5-a828-4e12-8a66-2a90c18d2f3e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A099.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11R-A00Z-07 09d1b9e5-a828-4e12-8a66-2a90c18d2f3e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011853_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11R-A00Z-07 09d1b9e5-a828-4e12-8a66-2a90c18d2f3e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011853_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11R-A00Z-07 09d1b9e5-a828-4e12-8a66-2a90c18d2f3e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011853_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11R-A010-13 9d3da8f6-449f-4faf-8aae-fe88eff8252d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A099.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11R-A010-13 9d3da8f6-449f-4faf-8aae-fe88eff8252d miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A099-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11R-A010-13 9d3da8f6-449f-4faf-8aae-fe88eff8252d miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A099-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11W-A019-09 1066cb38-e051-42fa-a8bc-20b659c17a13 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A099.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11W-A019-09 1066cb38-e051-42fa-a8bc-20b659c17a13 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11W-A020-08 e940de4c-c4a0-493a-90b0-d4917bca74f0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A099.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11X-A023-09 7742d502-f04f-4e5d-997f-6029fa03e9d5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A099.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A099 TCGA-A8-A099-01A TCGA-A8-A099-01A-11X-A024-08 ddc4823b-45f6-4237-a2c8-6ad01c269d79 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A099.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A099 TCGA-A8-A099-10A TCGA-A8-A099-10A-01D-A012-01 9d1655c1-308c-4c6a-af81-f64956e06671 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A099.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A099 TCGA-A8-A099-10A TCGA-A8-A099-10A-01D-A012-01 9d1655c1-308c-4c6a-af81-f64956e06671 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D07_628432.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A099 TCGA-A8-A099-10A TCGA-A8-A099-10A-01D-A012-01 9d1655c1-308c-4c6a-af81-f64956e06671 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D07_628432.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A099 TCGA-A8-A099-10A TCGA-A8-A099-10A-01D-A012-01 9d1655c1-308c-4c6a-af81-f64956e06671 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D07_628432.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A099 TCGA-A8-A099-10A TCGA-A8-A099-10A-01D-A012-01 9d1655c1-308c-4c6a-af81-f64956e06671 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D07_628432.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A099 TCGA-A8-A099-10A TCGA-A8-A099-10A-01D-A012-01 9d1655c1-308c-4c6a-af81-f64956e06671 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D07_628432.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A099 TCGA-A8-A099-10A TCGA-A8-A099-10A-01D-A012-01 9d1655c1-308c-4c6a-af81-f64956e06671 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D07_628432.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A099 TCGA-A8-A099-10A TCGA-A8-A099-10A-01D-A012-01 9d1655c1-308c-4c6a-af81-f64956e06671 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D07_628432.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A099 TCGA-A8-A099-10A TCGA-A8-A099-10A-01D-A012-01 9d1655c1-308c-4c6a-af81-f64956e06671 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D07_628432.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A099 TCGA-A8-A099-10A TCGA-A8-A099-10A-01D-A017-09 3a843edc-015e-40a0-81ee-b0e69130178b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A099.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A099 TCGA-A8-A099-10A TCGA-A8-A099-10A-01D-A018-08 f5c6054a-09d0-4efc-a720-51d71004a931 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A099.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A099 TCGA-A8-A099-10A TCGA-A8-A099-10A-01D-A069-02 fd1871be-c633-4254-8e60-7d1698519efa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A099.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A099 TCGA-A8-A099-10A TCGA-A8-A099-10A-01W-A021-09 f683d650-e338-4347-a0a3-b7e28cb096f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A099.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A099 TCGA-A8-A099-10A TCGA-A8-A099-10A-01W-A021-09 f683d650-e338-4347-a0a3-b7e28cb096f8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A099 TCGA-A8-A099-10A TCGA-A8-A099-10A-01W-A022-08 0c6e9c97-b94c-44a9-9ec0-3aafd80f91ad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A099.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A099 TCGA-A8-A099-10A TCGA-A8-A099-10A-01X-A025-09 1820840e-a70e-4990-890e-35e10333dcfa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A099.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A099 TCGA-A8-A099-10A TCGA-A8-A099-10A-01X-A026-08 03d6d429-9145-4a7e-b092-163f1bb27603 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A099.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11D-A00Y-05 2e1a5a20-53e2-4d85-8ff5-7fbc953afca3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11D-A00Y-05 2e1a5a20-53e2-4d85-8ff5-7fbc953afca3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A09A-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11D-A00Y-05 2e1a5a20-53e2-4d85-8ff5-7fbc953afca3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A09A-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11D-A00Y-05 2e1a5a20-53e2-4d85-8ff5-7fbc953afca3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A09A-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11D-A011-01 14c07825-f4cc-4d62-ad12-6a0bcc00e4b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11D-A011-01 14c07825-f4cc-4d62-ad12-6a0bcc00e4b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F03_628484.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11D-A011-01 14c07825-f4cc-4d62-ad12-6a0bcc00e4b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F03_628484.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11D-A011-01 14c07825-f4cc-4d62-ad12-6a0bcc00e4b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F03_628484.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11D-A011-01 14c07825-f4cc-4d62-ad12-6a0bcc00e4b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F03_628484.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11D-A011-01 14c07825-f4cc-4d62-ad12-6a0bcc00e4b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F03_628484.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11D-A011-01 14c07825-f4cc-4d62-ad12-6a0bcc00e4b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F03_628484.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11D-A011-01 14c07825-f4cc-4d62-ad12-6a0bcc00e4b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F03_628484.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11D-A011-01 14c07825-f4cc-4d62-ad12-6a0bcc00e4b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F03_628484.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11D-A015-09 5b1c86f2-142d-4d48-9a99-d02d1df24ee4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11D-A016-08 111a1caf-8884-4316-bb7d-0bd4fcdb0d00 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11D-A068-02 5f3b2d83-b69e-49db-8555-a86eb3007999 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11R-A00Z-07 7b1992b8-781d-49cc-a600-4bee56bcf1b5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11R-A00Z-07 7b1992b8-781d-49cc-a600-4bee56bcf1b5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011865_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11R-A00Z-07 7b1992b8-781d-49cc-a600-4bee56bcf1b5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011865_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11R-A00Z-07 7b1992b8-781d-49cc-a600-4bee56bcf1b5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011865_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11R-A00Z-07 7b1992b8-781d-49cc-a600-4bee56bcf1b5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445660.TCGA-A8-A09A-01A-11R-A00Z-07.110304_UNC12-SN629_0066_BC0086ABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11R-A00Z-07 7b1992b8-781d-49cc-a600-4bee56bcf1b5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445754.TCGA-A8-A09A-01A-11R-A00Z-07.110304_UNC12-SN629_0066_BC0086ABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11R-A00Z-07 7b1992b8-781d-49cc-a600-4bee56bcf1b5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445764.TCGA-A8-A09A-01A-11R-A00Z-07.110304_UNC12-SN629_0066_BC0086ABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11R-A010-13 b77e9803-49f4-4dea-87d4-7ab1712a4ae0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11R-A038-13 6a8ab713-eac0-4439-a7c7-3408b44a71af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11R-A038-13 6a8ab713-eac0-4439-a7c7-3408b44a71af miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09A-01A-11R-A038-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11R-A038-13 6a8ab713-eac0-4439-a7c7-3408b44a71af miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09A-01A-11R-A038-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11W-A019-09 ecfedc29-5c31-4d3d-b599-fc0a1c0beafa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11W-A019-09 ecfedc29-5c31-4d3d-b599-fc0a1c0beafa Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11W-A020-08 adef0e3b-2b4c-43ae-b441-01bf22adecbe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11X-A023-09 726eeb58-452f-47c3-96c4-4a8f4697a2f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09A TCGA-A8-A09A-01A TCGA-A8-A09A-01A-11X-A024-08 8df1b01a-0ca0-4499-b5f2-a17414bf107d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09A TCGA-A8-A09A-10A TCGA-A8-A09A-10A-01D-A012-01 ddb719ba-edd3-46be-b2f0-742e6aabcb84 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09A TCGA-A8-A09A-10A TCGA-A8-A09A-10A-01D-A012-01 ddb719ba-edd3-46be-b2f0-742e6aabcb84 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E07_628428.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A09A TCGA-A8-A09A-10A TCGA-A8-A09A-10A-01D-A012-01 ddb719ba-edd3-46be-b2f0-742e6aabcb84 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E07_628428.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09A TCGA-A8-A09A-10A TCGA-A8-A09A-10A-01D-A012-01 ddb719ba-edd3-46be-b2f0-742e6aabcb84 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E07_628428.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09A TCGA-A8-A09A-10A TCGA-A8-A09A-10A-01D-A012-01 ddb719ba-edd3-46be-b2f0-742e6aabcb84 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E07_628428.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09A TCGA-A8-A09A-10A TCGA-A8-A09A-10A-01D-A012-01 ddb719ba-edd3-46be-b2f0-742e6aabcb84 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E07_628428.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09A TCGA-A8-A09A-10A TCGA-A8-A09A-10A-01D-A012-01 ddb719ba-edd3-46be-b2f0-742e6aabcb84 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E07_628428.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09A TCGA-A8-A09A-10A TCGA-A8-A09A-10A-01D-A012-01 ddb719ba-edd3-46be-b2f0-742e6aabcb84 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E07_628428.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09A TCGA-A8-A09A-10A TCGA-A8-A09A-10A-01D-A012-01 ddb719ba-edd3-46be-b2f0-742e6aabcb84 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E07_628428.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A09A TCGA-A8-A09A-10A TCGA-A8-A09A-10A-01D-A017-09 3fdcd5d4-8c25-41c4-90af-a9d9444efefe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09A TCGA-A8-A09A-10A TCGA-A8-A09A-10A-01D-A018-08 02009466-1916-40a2-974d-72b2a781018c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09A TCGA-A8-A09A-10A TCGA-A8-A09A-10A-01D-A069-02 28b08339-098e-48c9-ab7f-c97e682276d2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09A TCGA-A8-A09A-10A TCGA-A8-A09A-10A-01W-A061-08 fdc2ee4d-5c16-408f-9330-7be49883276e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09A TCGA-A8-A09A-10A TCGA-A8-A09A-10A-01W-A062-09 c3017ca7-a84a-4cc3-9eb0-0336f130be31 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09A TCGA-A8-A09A-10A TCGA-A8-A09A-10A-01W-A062-09 c3017ca7-a84a-4cc3-9eb0-0336f130be31 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A09A TCGA-A8-A09A-10A TCGA-A8-A09A-10A-01X-A025-09 bb0911e4-7349-409a-8609-99c19f90b021 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09A TCGA-A8-A09A-10A TCGA-A8-A09A-10A-01X-A026-08 e2ef030b-02b1-4ec4-8fbe-285a6551fcb3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11D-A00Y-05 1802e09e-3dee-4776-83fe-3d262fcd50ff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11D-A00Y-05 1802e09e-3dee-4776-83fe-3d262fcd50ff DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A09B-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11D-A00Y-05 1802e09e-3dee-4776-83fe-3d262fcd50ff DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A09B-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11D-A00Y-05 1802e09e-3dee-4776-83fe-3d262fcd50ff DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A09B-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11D-A011-01 f7d6ee92-7add-46f0-9de5-17f1bea1842d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11D-A011-01 f7d6ee92-7add-46f0-9de5-17f1bea1842d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C10_628454.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11D-A011-01 f7d6ee92-7add-46f0-9de5-17f1bea1842d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C10_628454.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11D-A011-01 f7d6ee92-7add-46f0-9de5-17f1bea1842d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C10_628454.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11D-A011-01 f7d6ee92-7add-46f0-9de5-17f1bea1842d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C10_628454.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11D-A011-01 f7d6ee92-7add-46f0-9de5-17f1bea1842d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C10_628454.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11D-A011-01 f7d6ee92-7add-46f0-9de5-17f1bea1842d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C10_628454.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11D-A011-01 f7d6ee92-7add-46f0-9de5-17f1bea1842d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C10_628454.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11D-A011-01 f7d6ee92-7add-46f0-9de5-17f1bea1842d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C10_628454.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11D-A015-09 c37eb7c9-dd20-484d-9f20-499e77ef4c65 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11D-A016-08 e200eabd-4ed9-45ed-87a5-343409775414 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11D-A068-02 f2614668-2878-473e-98c0-148bad6575e2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11R-A00Z-07 df95b9f5-437f-438d-89b4-7c556e79b616 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11R-A00Z-07 df95b9f5-437f-438d-89b4-7c556e79b616 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011879_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11R-A00Z-07 df95b9f5-437f-438d-89b4-7c556e79b616 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011879_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11R-A00Z-07 df95b9f5-437f-438d-89b4-7c556e79b616 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011879_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11R-A00Z-07 df95b9f5-437f-438d-89b4-7c556e79b616 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_655496.TCGA-A8-A09B-01A-11R-A00Z-07.110304_UNC12-SN629_0065_AB05PGABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11R-A00Z-07 df95b9f5-437f-438d-89b4-7c556e79b616 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_655506.TCGA-A8-A09B-01A-11R-A00Z-07.110304_UNC12-SN629_0065_AB05PGABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11R-A00Z-07 df95b9f5-437f-438d-89b4-7c556e79b616 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_655556.TCGA-A8-A09B-01A-11R-A00Z-07.110304_UNC12-SN629_0065_AB05PGABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11R-A010-13 203a70d5-a138-4240-bf27-d993b52dba78 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11R-A010-13 203a70d5-a138-4240-bf27-d993b52dba78 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09B-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11R-A010-13 203a70d5-a138-4240-bf27-d993b52dba78 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09B-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11W-A019-09 a8be37d2-2743-4fde-9aae-2623b5a03b60 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11W-A019-09 a8be37d2-2743-4fde-9aae-2623b5a03b60 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11W-A020-08 8de9993e-96ca-4f88-9c4d-f3f4664a7b1f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11X-A023-09 5c58f132-7295-43d8-97d6-add3b26c0ab7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09B TCGA-A8-A09B-01A TCGA-A8-A09B-01A-11X-A024-08 e1da901c-d25b-4c61-97c2-bd04a37cece6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09B TCGA-A8-A09B-10A TCGA-A8-A09B-10A-01D-A012-01 80f2b71a-c101-4699-a186-1999a53ab18f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09B TCGA-A8-A09B-10A TCGA-A8-A09B-10A-01D-A012-01 80f2b71a-c101-4699-a186-1999a53ab18f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E03_628452.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A09B TCGA-A8-A09B-10A TCGA-A8-A09B-10A-01D-A012-01 80f2b71a-c101-4699-a186-1999a53ab18f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E03_628452.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09B TCGA-A8-A09B-10A TCGA-A8-A09B-10A-01D-A012-01 80f2b71a-c101-4699-a186-1999a53ab18f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E03_628452.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09B TCGA-A8-A09B-10A TCGA-A8-A09B-10A-01D-A012-01 80f2b71a-c101-4699-a186-1999a53ab18f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E03_628452.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09B TCGA-A8-A09B-10A TCGA-A8-A09B-10A-01D-A012-01 80f2b71a-c101-4699-a186-1999a53ab18f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E03_628452.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09B TCGA-A8-A09B-10A TCGA-A8-A09B-10A-01D-A012-01 80f2b71a-c101-4699-a186-1999a53ab18f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E03_628452.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09B TCGA-A8-A09B-10A TCGA-A8-A09B-10A-01D-A012-01 80f2b71a-c101-4699-a186-1999a53ab18f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E03_628452.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09B TCGA-A8-A09B-10A TCGA-A8-A09B-10A-01D-A012-01 80f2b71a-c101-4699-a186-1999a53ab18f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E03_628452.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A09B TCGA-A8-A09B-10A TCGA-A8-A09B-10A-01D-A017-09 95cdab68-f923-47f3-bf81-9c927b34b9da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09B TCGA-A8-A09B-10A TCGA-A8-A09B-10A-01D-A018-08 e811d61a-09bc-4b41-a712-a5d4d83be78a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09B TCGA-A8-A09B-10A TCGA-A8-A09B-10A-01D-A069-02 9127d08a-658a-4ff0-b689-8412da1fbde8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09B TCGA-A8-A09B-10A TCGA-A8-A09B-10A-01W-A021-09 6acddb6d-f866-498b-9b57-f46cbca2cdf9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09B TCGA-A8-A09B-10A TCGA-A8-A09B-10A-01W-A021-09 6acddb6d-f866-498b-9b57-f46cbca2cdf9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A09B TCGA-A8-A09B-10A TCGA-A8-A09B-10A-01W-A022-08 f87a3edb-d704-47f0-9188-9983e689ef3b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09B TCGA-A8-A09B-10A TCGA-A8-A09B-10A-01X-A025-09 0f9ebd52-2206-4428-a7d8-db00fd745054 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09B TCGA-A8-A09B-10A TCGA-A8-A09B-10A-01X-A026-08 1900242b-2512-4009-8e6b-19780551ad03 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11D-A00Y-05 3716824c-8f95-41ef-8f2b-55aa3110a93b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11D-A00Y-05 3716824c-8f95-41ef-8f2b-55aa3110a93b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A09C-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11D-A00Y-05 3716824c-8f95-41ef-8f2b-55aa3110a93b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A09C-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11D-A00Y-05 3716824c-8f95-41ef-8f2b-55aa3110a93b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A09C-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11D-A011-01 967323eb-3ae6-4b35-bab3-35abf8b80299 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11D-A011-01 967323eb-3ae6-4b35-bab3-35abf8b80299 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A09_628530.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11D-A011-01 967323eb-3ae6-4b35-bab3-35abf8b80299 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A09_628530.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11D-A011-01 967323eb-3ae6-4b35-bab3-35abf8b80299 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A09_628530.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11D-A011-01 967323eb-3ae6-4b35-bab3-35abf8b80299 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A09_628530.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11D-A011-01 967323eb-3ae6-4b35-bab3-35abf8b80299 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A09_628530.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11D-A011-01 967323eb-3ae6-4b35-bab3-35abf8b80299 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A09_628530.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11D-A011-01 967323eb-3ae6-4b35-bab3-35abf8b80299 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A09_628530.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11D-A011-01 967323eb-3ae6-4b35-bab3-35abf8b80299 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A09_628530.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11D-A015-09 297dbf5e-d087-46f4-905c-d93ded961591 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11D-A016-08 122a6987-532c-4af9-b5dd-9cec25c79ec3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11D-A068-02 6347435d-845e-4aec-9467-9c7b2529b4a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11R-A00Z-07 95bcf18b-40bf-4a20-82bf-727c7bb2a8c2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11R-A00Z-07 95bcf18b-40bf-4a20-82bf-727c7bb2a8c2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011891_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11R-A00Z-07 95bcf18b-40bf-4a20-82bf-727c7bb2a8c2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011891_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11R-A00Z-07 95bcf18b-40bf-4a20-82bf-727c7bb2a8c2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011891_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11R-A00Z-07 95bcf18b-40bf-4a20-82bf-727c7bb2a8c2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446388.TCGA-A8-A09C-01A-11R-A00Z-07.110225_UNC12-SN629_0063_AB041JABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11R-A00Z-07 95bcf18b-40bf-4a20-82bf-727c7bb2a8c2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446390.TCGA-A8-A09C-01A-11R-A00Z-07.110225_UNC12-SN629_0063_AB041JABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11R-A00Z-07 95bcf18b-40bf-4a20-82bf-727c7bb2a8c2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446436.TCGA-A8-A09C-01A-11R-A00Z-07.110225_UNC12-SN629_0063_AB041JABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11R-A010-13 68e0ddbd-9bba-472b-834b-0c9310202a22 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11R-A010-13 68e0ddbd-9bba-472b-834b-0c9310202a22 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09C-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11R-A010-13 68e0ddbd-9bba-472b-834b-0c9310202a22 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09C-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11W-A019-09 b56cf2cb-bb2a-46b6-b3b4-84dd8b364984 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11W-A019-09 b56cf2cb-bb2a-46b6-b3b4-84dd8b364984 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11W-A020-08 65b591f2-09fb-439d-9c00-3a12780b3ad4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11X-A023-09 f88ae10d-6c00-43a9-93ec-6fc02778d960 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-01A TCGA-A8-A09C-01A-11X-A024-08 635b6707-64d7-475e-9ad5-5f8cab55b982 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-10A TCGA-A8-A09C-10A-01D-A012-01 e69620b7-c659-4b4b-8b7d-c999f86d37e8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-10A TCGA-A8-A09C-10A-01D-A012-01 e69620b7-c659-4b4b-8b7d-c999f86d37e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E06_628564.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-10A TCGA-A8-A09C-10A-01D-A012-01 e69620b7-c659-4b4b-8b7d-c999f86d37e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E06_628564.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-10A TCGA-A8-A09C-10A-01D-A012-01 e69620b7-c659-4b4b-8b7d-c999f86d37e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E06_628564.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-10A TCGA-A8-A09C-10A-01D-A012-01 e69620b7-c659-4b4b-8b7d-c999f86d37e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E06_628564.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-10A TCGA-A8-A09C-10A-01D-A012-01 e69620b7-c659-4b4b-8b7d-c999f86d37e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E06_628564.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-10A TCGA-A8-A09C-10A-01D-A012-01 e69620b7-c659-4b4b-8b7d-c999f86d37e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E06_628564.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-10A TCGA-A8-A09C-10A-01D-A012-01 e69620b7-c659-4b4b-8b7d-c999f86d37e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E06_628564.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-10A TCGA-A8-A09C-10A-01D-A012-01 e69620b7-c659-4b4b-8b7d-c999f86d37e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E06_628564.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-10A TCGA-A8-A09C-10A-01D-A017-09 0c2a3007-4269-441a-aae3-ab467d544d87 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-10A TCGA-A8-A09C-10A-01D-A018-08 8689f8cb-885d-4f75-adbc-1804639b5bf9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-10A TCGA-A8-A09C-10A-01D-A069-02 53363737-3d9c-467d-8888-795e27ea54a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-10A TCGA-A8-A09C-10A-01W-A021-09 ca018838-491c-495f-bdd9-098feb0f24f3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-10A TCGA-A8-A09C-10A-01W-A021-09 ca018838-491c-495f-bdd9-098feb0f24f3 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-10A TCGA-A8-A09C-10A-01W-A022-08 035a1412-416f-410f-9650-e780363cf43f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-10A TCGA-A8-A09C-10A-01X-A025-09 5bb954c3-2860-4833-b5d3-21cc40c553e1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09C TCGA-A8-A09C-10A TCGA-A8-A09C-10A-01X-A026-08 537ebda7-ef7f-4659-b619-66e5950f8b30 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11D-A00Y-05 8997e986-b175-4484-b812-07af33bf759e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11D-A00Y-05 8997e986-b175-4484-b812-07af33bf759e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A09D-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11D-A00Y-05 8997e986-b175-4484-b812-07af33bf759e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A09D-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11D-A00Y-05 8997e986-b175-4484-b812-07af33bf759e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A09D-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11D-A011-01 ccbe901d-210e-402f-92b3-875c51074ef3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11D-A011-01 ccbe901d-210e-402f-92b3-875c51074ef3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E10_628544.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11D-A011-01 ccbe901d-210e-402f-92b3-875c51074ef3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E10_628544.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11D-A011-01 ccbe901d-210e-402f-92b3-875c51074ef3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E10_628544.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11D-A011-01 ccbe901d-210e-402f-92b3-875c51074ef3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E10_628544.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11D-A011-01 ccbe901d-210e-402f-92b3-875c51074ef3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E10_628544.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11D-A011-01 ccbe901d-210e-402f-92b3-875c51074ef3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E10_628544.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11D-A011-01 ccbe901d-210e-402f-92b3-875c51074ef3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E10_628544.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11D-A011-01 ccbe901d-210e-402f-92b3-875c51074ef3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E10_628544.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11D-A015-09 b7f7c79d-b99d-43bf-b0f1-69e901528f72 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11D-A016-08 7faaee16-fb7b-40ad-bc86-a6fe5d4631bd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11R-A00Z-07 f2563687-e055-41a8-8436-614fbad762d4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11R-A00Z-07 f2563687-e055-41a8-8436-614fbad762d4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012011_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11R-A00Z-07 f2563687-e055-41a8-8436-614fbad762d4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012011_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11R-A00Z-07 f2563687-e055-41a8-8436-614fbad762d4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012011_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11R-A00Z-07 f2563687-e055-41a8-8436-614fbad762d4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445351.TCGA-A8-A09D-01A-11R-A00Z-07.110310_UNC12-SN629_0069_AB05L5ABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11R-A00Z-07 f2563687-e055-41a8-8436-614fbad762d4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445368.TCGA-A8-A09D-01A-11R-A00Z-07.110310_UNC12-SN629_0069_AB05L5ABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11R-A00Z-07 f2563687-e055-41a8-8436-614fbad762d4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445479.TCGA-A8-A09D-01A-11R-A00Z-07.110310_UNC12-SN629_0069_AB05L5ABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11R-A010-13 a7314609-bc85-4eb9-94ed-b0cdf6aad849 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11R-A010-13 a7314609-bc85-4eb9-94ed-b0cdf6aad849 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09D-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11R-A010-13 a7314609-bc85-4eb9-94ed-b0cdf6aad849 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09D-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11W-A019-09 d0ef396f-4e9f-40ba-a09c-0a96832cabf9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11W-A019-09 d0ef396f-4e9f-40ba-a09c-0a96832cabf9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11W-A020-08 4bd5fddd-269b-421f-b3b4-4109b1bf9ee8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11X-A023-09 16eff5a2-5829-435c-99c8-f451f1e91e64 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09D TCGA-A8-A09D-01A TCGA-A8-A09D-01A-11X-A024-08 2388f09e-7818-4cda-ac91-9af24d1b0961 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09D TCGA-A8-A09D-10A TCGA-A8-A09D-10A-01D-A012-01 598040d4-143b-420a-ae43-980952bdb89b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09D TCGA-A8-A09D-10A TCGA-A8-A09D-10A-01D-A012-01 598040d4-143b-420a-ae43-980952bdb89b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H06_628534.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A09D TCGA-A8-A09D-10A TCGA-A8-A09D-10A-01D-A012-01 598040d4-143b-420a-ae43-980952bdb89b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H06_628534.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09D TCGA-A8-A09D-10A TCGA-A8-A09D-10A-01D-A012-01 598040d4-143b-420a-ae43-980952bdb89b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H06_628534.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09D TCGA-A8-A09D-10A TCGA-A8-A09D-10A-01D-A012-01 598040d4-143b-420a-ae43-980952bdb89b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H06_628534.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09D TCGA-A8-A09D-10A TCGA-A8-A09D-10A-01D-A012-01 598040d4-143b-420a-ae43-980952bdb89b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H06_628534.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09D TCGA-A8-A09D-10A TCGA-A8-A09D-10A-01D-A012-01 598040d4-143b-420a-ae43-980952bdb89b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H06_628534.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09D TCGA-A8-A09D-10A TCGA-A8-A09D-10A-01D-A012-01 598040d4-143b-420a-ae43-980952bdb89b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H06_628534.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09D TCGA-A8-A09D-10A TCGA-A8-A09D-10A-01D-A012-01 598040d4-143b-420a-ae43-980952bdb89b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H06_628534.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A09D TCGA-A8-A09D-10A TCGA-A8-A09D-10A-01D-A017-09 50bd903d-8068-41ee-84d8-87a9a9070564 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09D TCGA-A8-A09D-10A TCGA-A8-A09D-10A-01D-A018-08 b5d39ef2-36d0-4090-8426-6e3f6108483a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09D TCGA-A8-A09D-10A TCGA-A8-A09D-10A-01W-A021-09 4cc17aa7-57b9-4618-bd04-42378c11d27b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09D TCGA-A8-A09D-10A TCGA-A8-A09D-10A-01W-A021-09 4cc17aa7-57b9-4618-bd04-42378c11d27b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A09D TCGA-A8-A09D-10A TCGA-A8-A09D-10A-01W-A022-08 66bb19b5-db72-4155-a048-0092b845142b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09D TCGA-A8-A09D-10A TCGA-A8-A09D-10A-01X-A025-09 8d21f314-6134-4e93-8cfd-a850f58baa8f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09D TCGA-A8-A09D-10A TCGA-A8-A09D-10A-01X-A026-08 9a87564e-860b-4b39-a01a-662e79e47d1f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11D-A00Y-05 e7236078-755a-4a0f-8505-671a5ecc52ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11D-A00Y-05 e7236078-755a-4a0f-8505-671a5ecc52ed DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A09E-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11D-A00Y-05 e7236078-755a-4a0f-8505-671a5ecc52ed DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A09E-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11D-A00Y-05 e7236078-755a-4a0f-8505-671a5ecc52ed DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A09E-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11D-A011-01 70b9ece6-dedc-44c7-8f35-b78d9bac626e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11D-A011-01 70b9ece6-dedc-44c7-8f35-b78d9bac626e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G09_628500.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11D-A011-01 70b9ece6-dedc-44c7-8f35-b78d9bac626e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G09_628500.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11D-A011-01 70b9ece6-dedc-44c7-8f35-b78d9bac626e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G09_628500.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11D-A011-01 70b9ece6-dedc-44c7-8f35-b78d9bac626e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G09_628500.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11D-A011-01 70b9ece6-dedc-44c7-8f35-b78d9bac626e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G09_628500.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11D-A011-01 70b9ece6-dedc-44c7-8f35-b78d9bac626e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G09_628500.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11D-A011-01 70b9ece6-dedc-44c7-8f35-b78d9bac626e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G09_628500.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11D-A011-01 70b9ece6-dedc-44c7-8f35-b78d9bac626e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G09_628500.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11D-A015-09 af66c0b0-cb88-4e97-bfbf-236719a57360 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11D-A016-08 7675345b-7118-4beb-82b3-a61b8d4b2f24 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11D-A068-02 c79f5c92-af66-4d17-87c5-1a380cfb8c0e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11R-A00Z-07 1bbb85e8-8f55-44e3-8bd8-58c0a46c43bd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11R-A00Z-07 1bbb85e8-8f55-44e3-8bd8-58c0a46c43bd Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011821_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11R-A00Z-07 1bbb85e8-8f55-44e3-8bd8-58c0a46c43bd Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011821_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11R-A00Z-07 1bbb85e8-8f55-44e3-8bd8-58c0a46c43bd Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011821_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11R-A010-13 b5c968f0-74f6-45d9-8919-7486df967f2e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11R-A010-13 b5c968f0-74f6-45d9-8919-7486df967f2e miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09E-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11R-A010-13 b5c968f0-74f6-45d9-8919-7486df967f2e miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09E-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11W-A019-09 d6465963-5ea6-44a5-96b0-dff0b0fae4c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11W-A020-08 a31d3ba1-6c2c-4d3e-9ced-2a5894811ba9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11X-A023-09 b2bf9cfc-9ec2-4a00-834a-7f0daddff927 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-01A TCGA-A8-A09E-01A-11X-A024-08 be61cb76-e7da-45cc-a351-475fddcc1dc4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-10A TCGA-A8-A09E-10A-01D-A012-01 f5cd5c50-09e9-4e8b-ba00-f233a10cc9eb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-10A TCGA-A8-A09E-10A-01D-A012-01 f5cd5c50-09e9-4e8b-ba00-f233a10cc9eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A08_628448.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-10A TCGA-A8-A09E-10A-01D-A012-01 f5cd5c50-09e9-4e8b-ba00-f233a10cc9eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A08_628448.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-10A TCGA-A8-A09E-10A-01D-A012-01 f5cd5c50-09e9-4e8b-ba00-f233a10cc9eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A08_628448.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-10A TCGA-A8-A09E-10A-01D-A012-01 f5cd5c50-09e9-4e8b-ba00-f233a10cc9eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A08_628448.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-10A TCGA-A8-A09E-10A-01D-A012-01 f5cd5c50-09e9-4e8b-ba00-f233a10cc9eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A08_628448.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-10A TCGA-A8-A09E-10A-01D-A012-01 f5cd5c50-09e9-4e8b-ba00-f233a10cc9eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A08_628448.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-10A TCGA-A8-A09E-10A-01D-A012-01 f5cd5c50-09e9-4e8b-ba00-f233a10cc9eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A08_628448.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-10A TCGA-A8-A09E-10A-01D-A012-01 f5cd5c50-09e9-4e8b-ba00-f233a10cc9eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A08_628448.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-10A TCGA-A8-A09E-10A-01D-A017-09 8ebe1249-1cd8-406d-a908-1438a374abd3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-10A TCGA-A8-A09E-10A-01D-A018-08 ef961bce-621c-4a78-842f-e00f01256e98 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-10A TCGA-A8-A09E-10A-01D-A069-02 76afc1ea-eeb8-48a2-a48b-99150c9abeba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-10A TCGA-A8-A09E-10A-01W-A021-09 950408ef-e597-4d7c-852d-865fbc66f75d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-10A TCGA-A8-A09E-10A-01W-A022-08 ef475438-64c5-49ed-b8ad-5d441dd1a87d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-10A TCGA-A8-A09E-10A-01X-A025-09 9a71ca28-e066-435c-a40a-b04e0cfb7fe2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09E TCGA-A8-A09E-10A TCGA-A8-A09E-10A-01X-A026-08 2094d7b3-7c77-4e64-a4d3-945d77a7a1da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21D-A00Y-05 f590ce90-625b-46f0-b659-c3b0584651dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21D-A00Y-05 f590ce90-625b-46f0-b659-c3b0584651dc DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A09G-01A-21D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21D-A00Y-05 f590ce90-625b-46f0-b659-c3b0584651dc DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A09G-01A-21D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21D-A00Y-05 f590ce90-625b-46f0-b659-c3b0584651dc DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A09G-01A-21D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21D-A011-01 3cd925e9-93f6-4810-87c6-f3c7ecaf6e77 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21D-A011-01 3cd925e9-93f6-4810-87c6-f3c7ecaf6e77 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F09_628472.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21D-A011-01 3cd925e9-93f6-4810-87c6-f3c7ecaf6e77 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F09_628472.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21D-A011-01 3cd925e9-93f6-4810-87c6-f3c7ecaf6e77 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F09_628472.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21D-A011-01 3cd925e9-93f6-4810-87c6-f3c7ecaf6e77 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F09_628472.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21D-A011-01 3cd925e9-93f6-4810-87c6-f3c7ecaf6e77 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F09_628472.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21D-A011-01 3cd925e9-93f6-4810-87c6-f3c7ecaf6e77 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F09_628472.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21D-A011-01 3cd925e9-93f6-4810-87c6-f3c7ecaf6e77 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F09_628472.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21D-A011-01 3cd925e9-93f6-4810-87c6-f3c7ecaf6e77 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F09_628472.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21D-A015-09 a54fccdf-b092-4a11-a1dc-654cb89dceb9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21D-A016-08 8f671143-b54a-4f33-9c2d-98871704f84a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21D-A068-02 dd6b68a7-d5bd-4523-b78b-2f51c36500e9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21R-A00Z-07 31757dda-12d6-4f35-87f1-d00464f2815b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21R-A00Z-07 31757dda-12d6-4f35-87f1-d00464f2815b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011812_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21R-A00Z-07 31757dda-12d6-4f35-87f1-d00464f2815b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011812_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21R-A00Z-07 31757dda-12d6-4f35-87f1-d00464f2815b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011812_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21R-A00Z-07 31757dda-12d6-4f35-87f1-d00464f2815b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_675394.TCGA-A8-A09G-01A-21R-A00Z-07.111111_UNC14-SN744_0187_BC0565ABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21R-A00Z-07 31757dda-12d6-4f35-87f1-d00464f2815b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_675457.TCGA-A8-A09G-01A-21R-A00Z-07.111111_UNC14-SN744_0187_BC0565ABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21R-A00Z-07 31757dda-12d6-4f35-87f1-d00464f2815b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_675603.TCGA-A8-A09G-01A-21R-A00Z-07.111111_UNC14-SN744_0187_BC0565ABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21R-A010-13 1687d4e8-7c2c-4b42-a26a-2e1323ab6a2b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21R-A010-13 1687d4e8-7c2c-4b42-a26a-2e1323ab6a2b miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09G-01A-21R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21R-A010-13 1687d4e8-7c2c-4b42-a26a-2e1323ab6a2b miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09G-01A-21R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21W-A019-09 3bd68e94-d902-4079-8fdb-16edcc90de1c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21W-A019-09 3bd68e94-d902-4079-8fdb-16edcc90de1c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21W-A020-08 9b9cbece-d925-4e45-95b8-e4e6a9d92ddc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21X-A023-09 ab0f969e-c34f-43c8-811d-70382837aa6c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09G TCGA-A8-A09G-01A TCGA-A8-A09G-01A-21X-A024-08 e6ef040b-f488-43eb-808a-67a9843ecd59 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09G TCGA-A8-A09G-10A TCGA-A8-A09G-10A-01D-A012-01 393d55f3-5abd-4c2a-adfb-596b0a0ea1fa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09G TCGA-A8-A09G-10A TCGA-A8-A09G-10A-01D-A012-01 393d55f3-5abd-4c2a-adfb-596b0a0ea1fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G11_628588.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A09G TCGA-A8-A09G-10A TCGA-A8-A09G-10A-01D-A012-01 393d55f3-5abd-4c2a-adfb-596b0a0ea1fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G11_628588.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09G TCGA-A8-A09G-10A TCGA-A8-A09G-10A-01D-A012-01 393d55f3-5abd-4c2a-adfb-596b0a0ea1fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G11_628588.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09G TCGA-A8-A09G-10A TCGA-A8-A09G-10A-01D-A012-01 393d55f3-5abd-4c2a-adfb-596b0a0ea1fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G11_628588.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09G TCGA-A8-A09G-10A TCGA-A8-A09G-10A-01D-A012-01 393d55f3-5abd-4c2a-adfb-596b0a0ea1fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G11_628588.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09G TCGA-A8-A09G-10A TCGA-A8-A09G-10A-01D-A012-01 393d55f3-5abd-4c2a-adfb-596b0a0ea1fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G11_628588.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09G TCGA-A8-A09G-10A TCGA-A8-A09G-10A-01D-A012-01 393d55f3-5abd-4c2a-adfb-596b0a0ea1fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G11_628588.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09G TCGA-A8-A09G-10A TCGA-A8-A09G-10A-01D-A012-01 393d55f3-5abd-4c2a-adfb-596b0a0ea1fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G11_628588.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A09G TCGA-A8-A09G-10A TCGA-A8-A09G-10A-01D-A017-09 11748e6b-f1e4-4cc3-8b03-d58f9eaed110 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09G TCGA-A8-A09G-10A TCGA-A8-A09G-10A-01D-A018-08 0f61075b-8d26-41ae-bd0c-191f912d0f19 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09G TCGA-A8-A09G-10A TCGA-A8-A09G-10A-01D-A069-02 c2a9d039-a3ca-4398-9051-c02d5da344f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09G TCGA-A8-A09G-10A TCGA-A8-A09G-10A-01W-A021-09 f53ea676-2475-408e-9b54-29324a255a2e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09G TCGA-A8-A09G-10A TCGA-A8-A09G-10A-01W-A021-09 f53ea676-2475-408e-9b54-29324a255a2e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A09G TCGA-A8-A09G-10A TCGA-A8-A09G-10A-01W-A022-08 c1c5d8f2-7437-4179-bf4a-f4ecee76dc3f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09G TCGA-A8-A09G-10A TCGA-A8-A09G-10A-01X-A025-09 0f80247e-0ae8-4698-b1c8-ab6f5aea97ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09G TCGA-A8-A09G-10A TCGA-A8-A09G-10A-01X-A026-08 49ea1b86-33b4-4feb-87bb-48af30478e45 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22D-A032-05 3315363a-a4a7-4034-b616-991b528779a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22D-A032-05 3315363a-a4a7-4034-b616-991b528779a2 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A8-A09I-01A-22D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22D-A032-05 3315363a-a4a7-4034-b616-991b528779a2 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A8-A09I-01A-22D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22D-A032-05 3315363a-a4a7-4034-b616-991b528779a2 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A8-A09I-01A-22D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22D-A033-02 2ffeb439-cdcd-416d-bf7d-b18e8b8225ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22D-A036-01 bd4d930e-0848-48c1-8b03-c04a986f22d8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22D-A036-01 bd4d930e-0848-48c1-8b03-c04a986f22d8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D11_666934.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22D-A036-01 bd4d930e-0848-48c1-8b03-c04a986f22d8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D11_666934.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22D-A036-01 bd4d930e-0848-48c1-8b03-c04a986f22d8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D11_666934.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22D-A036-01 bd4d930e-0848-48c1-8b03-c04a986f22d8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D11_666934.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22D-A036-01 bd4d930e-0848-48c1-8b03-c04a986f22d8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D11_666934.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22D-A036-01 bd4d930e-0848-48c1-8b03-c04a986f22d8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D11_666934.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22D-A036-01 bd4d930e-0848-48c1-8b03-c04a986f22d8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D11_666934.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22D-A036-01 bd4d930e-0848-48c1-8b03-c04a986f22d8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D11_666934.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22D-A044-08 3a094344-2813-4298-8eaa-b859861caeb9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22D-A045-09 b545ff39-9ad0-483b-bbe1-abcd438c4f93 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22D-A19H-09 987d41ee-6bab-490c-b0f2-bf28c0089de9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22R-A034-07 433b49ba-949b-4914-985a-be19b3b32502 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22R-A034-07 433b49ba-949b-4914-985a-be19b3b32502 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011896_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22R-A034-07 433b49ba-949b-4914-985a-be19b3b32502 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011896_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22R-A034-07 433b49ba-949b-4914-985a-be19b3b32502 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011896_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22R-A034-07 433b49ba-949b-4914-985a-be19b3b32502 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406786.TCGA-A8-A09I-01A-22R-A034-07.110725_UNC9-SN296_0208_AC0477ABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22R-A034-07 433b49ba-949b-4914-985a-be19b3b32502 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406808.TCGA-A8-A09I-01A-22R-A034-07.110725_UNC9-SN296_0208_AC0477ABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22R-A034-07 433b49ba-949b-4914-985a-be19b3b32502 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406890.TCGA-A8-A09I-01A-22R-A034-07.110725_UNC9-SN296_0208_AC0477ABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22R-A035-13 3e58ba3c-e09a-42f7-9865-b9e88e66c316 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22R-A035-13 3e58ba3c-e09a-42f7-9865-b9e88e66c316 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09I-01A-22R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22R-A035-13 3e58ba3c-e09a-42f7-9865-b9e88e66c316 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09I-01A-22R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22W-A050-09 96d5070d-1fa9-4fa5-b2c9-472240dfd3b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22W-A050-09 96d5070d-1fa9-4fa5-b2c9-472240dfd3b9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22W-A050-09 96d5070d-1fa9-4fa5-b2c9-472240dfd3b9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22W-A051-08 370f586d-ab33-4704-bbd9-e75dca6e9a6c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22X-A048-08 0d9ac7b3-62a5-4782-a5dd-87485a253d22 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-01A TCGA-A8-A09I-01A-22X-A049-09 22500f81-7ab0-4713-b0dc-81d9afda589a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-10A TCGA-A8-A09I-10A-01D-A031-02 2af1729b-7507-42c1-8d24-56e6b74c4e31 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-10A TCGA-A8-A09I-10A-01D-A037-01 815e64f0-821d-4556-b3de-438412c5b356 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-10A TCGA-A8-A09I-10A-01D-A037-01 815e64f0-821d-4556-b3de-438412c5b356 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G04_666952.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-10A TCGA-A8-A09I-10A-01D-A037-01 815e64f0-821d-4556-b3de-438412c5b356 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G04_666952.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-10A TCGA-A8-A09I-10A-01D-A037-01 815e64f0-821d-4556-b3de-438412c5b356 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G04_666952.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-10A TCGA-A8-A09I-10A-01D-A037-01 815e64f0-821d-4556-b3de-438412c5b356 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G04_666952.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-10A TCGA-A8-A09I-10A-01D-A037-01 815e64f0-821d-4556-b3de-438412c5b356 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G04_666952.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-10A TCGA-A8-A09I-10A-01D-A037-01 815e64f0-821d-4556-b3de-438412c5b356 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G04_666952.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-10A TCGA-A8-A09I-10A-01D-A037-01 815e64f0-821d-4556-b3de-438412c5b356 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G04_666952.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-10A TCGA-A8-A09I-10A-01D-A037-01 815e64f0-821d-4556-b3de-438412c5b356 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G04_666952.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-10A TCGA-A8-A09I-10A-01D-A046-08 3919af95-3665-4808-979c-29e7ebd2de46 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-10A TCGA-A8-A09I-10A-01D-A047-09 54cca86c-ce79-405a-bd0e-2909a5e15770 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-10A TCGA-A8-A09I-10A-01D-A19H-09 1ea3bcbf-242f-40fd-840b-fddb4f65a63f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-10A TCGA-A8-A09I-10A-01W-A053-08 8053bd51-fa97-466d-9477-c0a132c37a09 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-10A TCGA-A8-A09I-10A-01W-A055-09 ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-10A TCGA-A8-A09I-10A-01W-A055-09 ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-10A TCGA-A8-A09I-10A-01W-A055-09 ac8bb292-dad8-4f5b-b9d1-8c7aeb24bbac Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-10A TCGA-A8-A09I-10A-01X-A052-08 b6438448-80b4-45b7-bae6-696121701777 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09I TCGA-A8-A09I-10A TCGA-A8-A09I-10A-01X-A054-09 8618d1c6-3f28-47d0-b68c-f4c773dea037 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11D-A00Y-05 7acd4633-b0c6-4613-93ea-930a36573e6f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11D-A00Y-05 7acd4633-b0c6-4613-93ea-930a36573e6f DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A09K-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11D-A00Y-05 7acd4633-b0c6-4613-93ea-930a36573e6f DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A09K-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11D-A00Y-05 7acd4633-b0c6-4613-93ea-930a36573e6f DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A09K-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11D-A011-01 b412fc52-5776-4ff9-b9c4-829efabfb377 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification / CenterNotification Prior malignancy / Item flagged DNU No Note Specified / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11D-A011-01 b412fc52-5776-4ff9-b9c4-829efabfb377 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Notification / CenterNotification Prior malignancy / Item flagged DNU No Note Specified / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11D-A011-01 b412fc52-5776-4ff9-b9c4-829efabfb377 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification / CenterNotification Prior malignancy / Item flagged DNU No Note Specified / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11D-A011-01 b412fc52-5776-4ff9-b9c4-829efabfb377 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification / CenterNotification Prior malignancy / Item flagged DNU No Note Specified / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11D-A011-01 b412fc52-5776-4ff9-b9c4-829efabfb377 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification / CenterNotification Prior malignancy / Item flagged DNU No Note Specified / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11D-A011-01 b412fc52-5776-4ff9-b9c4-829efabfb377 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification / CenterNotification Prior malignancy / Item flagged DNU No Note Specified / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11D-A011-01 b412fc52-5776-4ff9-b9c4-829efabfb377 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification / CenterNotification Prior malignancy / Item flagged DNU No Note Specified / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11D-A011-01 b412fc52-5776-4ff9-b9c4-829efabfb377 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification / CenterNotification Prior malignancy / Item flagged DNU No Note Specified / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H09_628554.seg.data.txt'. TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11D-A015-09 2160a1fd-f9f0-43bf-ad29-4d3b84badb5c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11D-A016-08 e236f002-3921-46c9-84cd-5fb43b488a12 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11D-A068-02 767e4dd0-f01a-4b84-a373-35f647f5801c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11R-A00Z-07 9b54f75f-80eb-441d-83ca-5ae1d00bdfa9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11R-A00Z-07 9b54f75f-80eb-441d-83ca-5ae1d00bdfa9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011841_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11R-A00Z-07 9b54f75f-80eb-441d-83ca-5ae1d00bdfa9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011841_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11R-A00Z-07 9b54f75f-80eb-441d-83ca-5ae1d00bdfa9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011841_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11R-A00Z-07 9b54f75f-80eb-441d-83ca-5ae1d00bdfa9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593392.TCGA-A8-A09K-01A-11R-A00Z-07.110225_SN254_0195_A81LH6ABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11R-A00Z-07 9b54f75f-80eb-441d-83ca-5ae1d00bdfa9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593396.TCGA-A8-A09K-01A-11R-A00Z-07.110225_SN254_0195_A81LH6ABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11R-A00Z-07 9b54f75f-80eb-441d-83ca-5ae1d00bdfa9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593416.TCGA-A8-A09K-01A-11R-A00Z-07.110225_SN254_0195_A81LH6ABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11R-A010-13 5cffbc5c-24e9-4bd1-b0ac-2a84bfb8c14f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11R-A010-13 5cffbc5c-24e9-4bd1-b0ac-2a84bfb8c14f miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09K-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11R-A010-13 5cffbc5c-24e9-4bd1-b0ac-2a84bfb8c14f miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09K-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11W-A019-09 d8cd75f2-5ee5-4296-a781-a6a16ee94506 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11W-A020-08 4e8be54e-01df-414f-ba5d-cae22c2f0427 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11X-A023-09 ef362445-83bf-464d-be1c-5582d0b0eead Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-01A TCGA-A8-A09K-01A-11X-A024-08 21af8600-206c-4c64-8a46-3d79f3232e2f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-10A TCGA-A8-A09K-10A-01D-A012-01 4f5a7b50-a957-4765-b3b6-6bc0662b38fc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-10A TCGA-A8-A09K-10A-01D-A012-01 4f5a7b50-a957-4765-b3b6-6bc0662b38fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G03_628460.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-10A TCGA-A8-A09K-10A-01D-A012-01 4f5a7b50-a957-4765-b3b6-6bc0662b38fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G03_628460.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-10A TCGA-A8-A09K-10A-01D-A012-01 4f5a7b50-a957-4765-b3b6-6bc0662b38fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G03_628460.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-10A TCGA-A8-A09K-10A-01D-A012-01 4f5a7b50-a957-4765-b3b6-6bc0662b38fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G03_628460.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-10A TCGA-A8-A09K-10A-01D-A012-01 4f5a7b50-a957-4765-b3b6-6bc0662b38fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G03_628460.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-10A TCGA-A8-A09K-10A-01D-A012-01 4f5a7b50-a957-4765-b3b6-6bc0662b38fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G03_628460.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-10A TCGA-A8-A09K-10A-01D-A012-01 4f5a7b50-a957-4765-b3b6-6bc0662b38fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G03_628460.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-10A TCGA-A8-A09K-10A-01D-A012-01 4f5a7b50-a957-4765-b3b6-6bc0662b38fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G03_628460.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-10A TCGA-A8-A09K-10A-01D-A017-09 ec23a685-769a-4957-bef2-e4b2bc11b710 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-10A TCGA-A8-A09K-10A-01D-A018-08 57c46fbe-1f5c-41ae-8c4d-581dfcd28538 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-10A TCGA-A8-A09K-10A-01D-A069-02 f38b66ef-1f04-49ce-b612-fa093501e9a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-10A TCGA-A8-A09K-10A-01W-A021-09 065ce36f-67f9-44fe-b58e-a37d74eb2a35 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-10A TCGA-A8-A09K-10A-01W-A022-08 1d4bdb70-e928-4233-8174-7ac9ff9ac29e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-10A TCGA-A8-A09K-10A-01X-A025-09 bfe789b5-c2fb-4f48-a809-2f25a825228f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09K TCGA-A8-A09K-10A TCGA-A8-A09K-10A-01X-A026-08 9831c8b0-fb0e-4a48-837a-ee8b6a371632 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Notification Prior malignancy No Note Specified TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11D-A00Y-05 3aac59e5-d9ed-4cab-83a8-708c3a655566 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11D-A00Y-05 3aac59e5-d9ed-4cab-83a8-708c3a655566 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A09M-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11D-A00Y-05 3aac59e5-d9ed-4cab-83a8-708c3a655566 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A09M-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11D-A00Y-05 3aac59e5-d9ed-4cab-83a8-708c3a655566 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A09M-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11D-A011-01 9240c87f-41fc-4576-aedb-2c8010079920 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11D-A011-01 9240c87f-41fc-4576-aedb-2c8010079920 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F08_628494.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11D-A011-01 9240c87f-41fc-4576-aedb-2c8010079920 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F08_628494.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11D-A011-01 9240c87f-41fc-4576-aedb-2c8010079920 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F08_628494.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11D-A011-01 9240c87f-41fc-4576-aedb-2c8010079920 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F08_628494.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11D-A011-01 9240c87f-41fc-4576-aedb-2c8010079920 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F08_628494.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11D-A011-01 9240c87f-41fc-4576-aedb-2c8010079920 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F08_628494.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11D-A011-01 9240c87f-41fc-4576-aedb-2c8010079920 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F08_628494.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11D-A011-01 9240c87f-41fc-4576-aedb-2c8010079920 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F08_628494.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11D-A015-09 4716b403-9190-417e-8ce9-9959c56958ae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11D-A016-08 6a78c528-5a54-4b10-bbfb-29f7a16ca2b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11D-A068-02 2bd88faf-8bd5-4a0c-9985-6fdd9e208f41 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11R-A00Z-07 3e08280c-f748-43c7-928b-007b322917b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11R-A00Z-07 3e08280c-f748-43c7-928b-007b322917b2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011854_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11R-A00Z-07 3e08280c-f748-43c7-928b-007b322917b2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011854_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11R-A00Z-07 3e08280c-f748-43c7-928b-007b322917b2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011854_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11R-A010-13 37206b98-a17f-4726-96cf-0ec0b46c33f5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11R-A010-13 37206b98-a17f-4726-96cf-0ec0b46c33f5 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09M-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11R-A010-13 37206b98-a17f-4726-96cf-0ec0b46c33f5 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09M-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11W-A019-09 8e92515a-8049-4ebb-9117-a137c06e5d04 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11W-A019-09 8e92515a-8049-4ebb-9117-a137c06e5d04 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11W-A020-08 1fd00abe-92d7-43af-9508-4b6571dd8e30 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11X-A023-09 2e117b72-0fe5-4212-b67e-2a0fdd01204e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09M TCGA-A8-A09M-01A TCGA-A8-A09M-01A-11X-A024-08 2184e3d5-823b-4a5c-92e2-d2cf82df4c56 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09M TCGA-A8-A09M-10A TCGA-A8-A09M-10A-01D-A012-01 5aefe2e1-c811-4a96-8440-cb04641f57b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09M TCGA-A8-A09M-10A TCGA-A8-A09M-10A-01D-A012-01 5aefe2e1-c811-4a96-8440-cb04641f57b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G12_628522.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A09M TCGA-A8-A09M-10A TCGA-A8-A09M-10A-01D-A012-01 5aefe2e1-c811-4a96-8440-cb04641f57b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G12_628522.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09M TCGA-A8-A09M-10A TCGA-A8-A09M-10A-01D-A012-01 5aefe2e1-c811-4a96-8440-cb04641f57b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G12_628522.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09M TCGA-A8-A09M-10A TCGA-A8-A09M-10A-01D-A012-01 5aefe2e1-c811-4a96-8440-cb04641f57b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G12_628522.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09M TCGA-A8-A09M-10A TCGA-A8-A09M-10A-01D-A012-01 5aefe2e1-c811-4a96-8440-cb04641f57b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G12_628522.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09M TCGA-A8-A09M-10A TCGA-A8-A09M-10A-01D-A012-01 5aefe2e1-c811-4a96-8440-cb04641f57b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G12_628522.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09M TCGA-A8-A09M-10A TCGA-A8-A09M-10A-01D-A012-01 5aefe2e1-c811-4a96-8440-cb04641f57b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G12_628522.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09M TCGA-A8-A09M-10A TCGA-A8-A09M-10A-01D-A012-01 5aefe2e1-c811-4a96-8440-cb04641f57b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G12_628522.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A09M TCGA-A8-A09M-10A TCGA-A8-A09M-10A-01D-A017-09 9b9498fd-2d40-4e4a-bbee-3ebc30bd671f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09M TCGA-A8-A09M-10A TCGA-A8-A09M-10A-01D-A018-08 6f73b438-cc1a-4ac0-9c8d-4767d92af7e0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09M TCGA-A8-A09M-10A TCGA-A8-A09M-10A-01D-A069-02 ce55a10b-7fd6-4b50-9b5f-3a322bebae7b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09M TCGA-A8-A09M-10A TCGA-A8-A09M-10A-01W-A021-09 e689f01f-e944-408f-9dbe-894b816b09ce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09M TCGA-A8-A09M-10A TCGA-A8-A09M-10A-01W-A021-09 e689f01f-e944-408f-9dbe-894b816b09ce Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A09M TCGA-A8-A09M-10A TCGA-A8-A09M-10A-01W-A022-08 e4cfb2a1-ce38-4dea-8543-5b0596d1bfdc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09M TCGA-A8-A09M-10A TCGA-A8-A09M-10A-01X-A025-09 a50085cd-ee13-4b2b-bd8e-4399c0f1e5c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09M TCGA-A8-A09M-10A TCGA-A8-A09M-10A-01X-A026-08 51ea8d3c-0dcc-4082-bad8-3a9f6c1d8f18 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11D-A00Y-05 58c77238-7a8d-4085-96eb-10c9098dedd1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11D-A00Y-05 58c77238-7a8d-4085-96eb-10c9098dedd1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A09N-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11D-A00Y-05 58c77238-7a8d-4085-96eb-10c9098dedd1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A09N-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11D-A00Y-05 58c77238-7a8d-4085-96eb-10c9098dedd1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A09N-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11D-A011-01 bdf230f7-71c7-4ee8-b1ed-b29015b40f57 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11D-A011-01 bdf230f7-71c7-4ee8-b1ed-b29015b40f57 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E12_628474.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11D-A011-01 bdf230f7-71c7-4ee8-b1ed-b29015b40f57 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E12_628474.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11D-A011-01 bdf230f7-71c7-4ee8-b1ed-b29015b40f57 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E12_628474.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11D-A011-01 bdf230f7-71c7-4ee8-b1ed-b29015b40f57 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E12_628474.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11D-A011-01 bdf230f7-71c7-4ee8-b1ed-b29015b40f57 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E12_628474.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11D-A011-01 bdf230f7-71c7-4ee8-b1ed-b29015b40f57 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E12_628474.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11D-A011-01 bdf230f7-71c7-4ee8-b1ed-b29015b40f57 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E12_628474.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11D-A011-01 bdf230f7-71c7-4ee8-b1ed-b29015b40f57 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E12_628474.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11D-A015-09 4b18494d-33ef-419d-b86c-fe201caa0d70 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11D-A016-08 5d3f2d6c-b2fd-4b2a-847b-b50da264b6d5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11D-A068-02 afe11155-7f91-4632-9916-2e05f7af04db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11R-A00Z-07 653e3eb4-ebdb-42d2-9479-a1ea8a43bdc5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11R-A00Z-07 653e3eb4-ebdb-42d2-9479-a1ea8a43bdc5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011866_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11R-A00Z-07 653e3eb4-ebdb-42d2-9479-a1ea8a43bdc5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011866_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11R-A00Z-07 653e3eb4-ebdb-42d2-9479-a1ea8a43bdc5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011866_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11R-A00Z-07 653e3eb4-ebdb-42d2-9479-a1ea8a43bdc5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445617.TCGA-A8-A09N-01A-11R-A00Z-07.110304_UNC12-SN629_0066_BC0086ABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11R-A00Z-07 653e3eb4-ebdb-42d2-9479-a1ea8a43bdc5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445761.TCGA-A8-A09N-01A-11R-A00Z-07.110304_UNC12-SN629_0066_BC0086ABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11R-A00Z-07 653e3eb4-ebdb-42d2-9479-a1ea8a43bdc5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445791.TCGA-A8-A09N-01A-11R-A00Z-07.110304_UNC12-SN629_0066_BC0086ABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11R-A010-13 04a55569-6dc5-4af0-b62d-da70b09eb2c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11R-A010-13 04a55569-6dc5-4af0-b62d-da70b09eb2c9 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09N-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11R-A010-13 04a55569-6dc5-4af0-b62d-da70b09eb2c9 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09N-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11W-A019-09 304a2945-f134-45c7-9eaa-c6c9c2435552 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11W-A019-09 304a2945-f134-45c7-9eaa-c6c9c2435552 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11W-A020-08 2f568b4c-4b40-42f2-b11f-294138df7f6b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11X-A023-09 6c202f2d-a2e6-4302-aa02-5f77323ead95 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09N TCGA-A8-A09N-01A TCGA-A8-A09N-01A-11X-A024-08 5b9c82ec-744b-47ff-92be-29551ed6f7e7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09N TCGA-A8-A09N-10A TCGA-A8-A09N-10A-01D-A012-01 5bc79278-10c5-4949-804e-5cb30fd548db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09N TCGA-A8-A09N-10A TCGA-A8-A09N-10A-01D-A012-01 5bc79278-10c5-4949-804e-5cb30fd548db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E08_628562.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A09N TCGA-A8-A09N-10A TCGA-A8-A09N-10A-01D-A012-01 5bc79278-10c5-4949-804e-5cb30fd548db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E08_628562.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09N TCGA-A8-A09N-10A TCGA-A8-A09N-10A-01D-A012-01 5bc79278-10c5-4949-804e-5cb30fd548db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E08_628562.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09N TCGA-A8-A09N-10A TCGA-A8-A09N-10A-01D-A012-01 5bc79278-10c5-4949-804e-5cb30fd548db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E08_628562.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09N TCGA-A8-A09N-10A TCGA-A8-A09N-10A-01D-A012-01 5bc79278-10c5-4949-804e-5cb30fd548db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E08_628562.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09N TCGA-A8-A09N-10A TCGA-A8-A09N-10A-01D-A012-01 5bc79278-10c5-4949-804e-5cb30fd548db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E08_628562.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09N TCGA-A8-A09N-10A TCGA-A8-A09N-10A-01D-A012-01 5bc79278-10c5-4949-804e-5cb30fd548db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E08_628562.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09N TCGA-A8-A09N-10A TCGA-A8-A09N-10A-01D-A012-01 5bc79278-10c5-4949-804e-5cb30fd548db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E08_628562.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A09N TCGA-A8-A09N-10A TCGA-A8-A09N-10A-01D-A017-09 acb6a8aa-ce15-45e4-bebe-2099cd4ccd34 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09N TCGA-A8-A09N-10A TCGA-A8-A09N-10A-01D-A018-08 7eab7d57-009f-4748-9e6c-079fbfc9fade Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09N TCGA-A8-A09N-10A TCGA-A8-A09N-10A-01D-A069-02 ce705088-4631-4ff8-83e2-d1894707680b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09N TCGA-A8-A09N-10A TCGA-A8-A09N-10A-01W-A021-09 03c46c7b-9609-47ca-8ae5-714ce4a77860 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09N TCGA-A8-A09N-10A TCGA-A8-A09N-10A-01W-A021-09 03c46c7b-9609-47ca-8ae5-714ce4a77860 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A09N TCGA-A8-A09N-10A TCGA-A8-A09N-10A-01W-A022-08 31cefe30-7610-4ead-bf4b-236273d972b4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09N TCGA-A8-A09N-10A TCGA-A8-A09N-10A-01X-A025-09 fdb7b558-4d08-473d-bd52-685c82eee52a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09N TCGA-A8-A09N-10A TCGA-A8-A09N-10A-01X-A026-08 8c541a0b-ccd3-4623-9b5f-fffad79e294d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11D-A00Y-05 99293f82-ddc6-49a8-9323-67eb1d9a491c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11D-A00Y-05 99293f82-ddc6-49a8-9323-67eb1d9a491c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A09Q-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11D-A00Y-05 99293f82-ddc6-49a8-9323-67eb1d9a491c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A09Q-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11D-A00Y-05 99293f82-ddc6-49a8-9323-67eb1d9a491c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A09Q-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11D-A011-01 f2824bc4-e4fd-4416-83ce-f9ab555cd208 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11D-A011-01 f2824bc4-e4fd-4416-83ce-f9ab555cd208 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B09_628542.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11D-A011-01 f2824bc4-e4fd-4416-83ce-f9ab555cd208 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B09_628542.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11D-A011-01 f2824bc4-e4fd-4416-83ce-f9ab555cd208 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B09_628542.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11D-A011-01 f2824bc4-e4fd-4416-83ce-f9ab555cd208 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B09_628542.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11D-A011-01 f2824bc4-e4fd-4416-83ce-f9ab555cd208 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B09_628542.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11D-A011-01 f2824bc4-e4fd-4416-83ce-f9ab555cd208 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B09_628542.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11D-A011-01 f2824bc4-e4fd-4416-83ce-f9ab555cd208 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B09_628542.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11D-A011-01 f2824bc4-e4fd-4416-83ce-f9ab555cd208 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B09_628542.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11D-A015-09 3db93d4a-4a8b-432d-9d14-8e7c8a40516a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11D-A016-08 41961bb2-031d-4ebf-9669-edf5b51b373d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11D-A068-02 7872e078-5050-467c-a80f-c300e2ddf644 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11R-A00Z-07 9560e482-cb14-4456-b9a6-d2ac12f96a4f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11R-A00Z-07 9560e482-cb14-4456-b9a6-d2ac12f96a4f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011892_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11R-A00Z-07 9560e482-cb14-4456-b9a6-d2ac12f96a4f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011892_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11R-A00Z-07 9560e482-cb14-4456-b9a6-d2ac12f96a4f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011892_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11R-A00Z-07 9560e482-cb14-4456-b9a6-d2ac12f96a4f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446462.TCGA-A8-A09Q-01A-11R-A00Z-07.110225_UNC12-SN629_0063_AB041JABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11R-A00Z-07 9560e482-cb14-4456-b9a6-d2ac12f96a4f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446474.TCGA-A8-A09Q-01A-11R-A00Z-07.110225_UNC12-SN629_0063_AB041JABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11R-A00Z-07 9560e482-cb14-4456-b9a6-d2ac12f96a4f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446482.TCGA-A8-A09Q-01A-11R-A00Z-07.110225_UNC12-SN629_0063_AB041JABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11R-A010-13 7b14e49b-773d-4e0e-a6ee-33642dea4376 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11R-A010-13 7b14e49b-773d-4e0e-a6ee-33642dea4376 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09Q-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11R-A010-13 7b14e49b-773d-4e0e-a6ee-33642dea4376 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09Q-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11W-A019-09 51a8ac83-bafa-4df7-a52d-a1e1fb45799d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11W-A019-09 51a8ac83-bafa-4df7-a52d-a1e1fb45799d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11W-A020-08 0939dae6-4b64-4d7f-a5f0-3f124ad69879 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11X-A023-09 3fb563cd-a134-4fd8-ac00-66dfbcb84116 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-01A TCGA-A8-A09Q-01A-11X-A024-08 dc78d561-c8a7-49a1-8a1b-121136472e6c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-10A TCGA-A8-A09Q-10A-01D-A012-01 7bf1b0b4-51ad-4c9b-91aa-76342afe2b16 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-10A TCGA-A8-A09Q-10A-01D-A012-01 7bf1b0b4-51ad-4c9b-91aa-76342afe2b16 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G08_628514.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A09Q TCGA-A8-A09Q-10A TCGA-A8-A09Q-10A-01D-A012-01 7bf1b0b4-51ad-4c9b-91aa-76342afe2b16 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G08_628514.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-10A TCGA-A8-A09Q-10A-01D-A012-01 7bf1b0b4-51ad-4c9b-91aa-76342afe2b16 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G08_628514.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-10A TCGA-A8-A09Q-10A-01D-A012-01 7bf1b0b4-51ad-4c9b-91aa-76342afe2b16 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G08_628514.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-10A TCGA-A8-A09Q-10A-01D-A012-01 7bf1b0b4-51ad-4c9b-91aa-76342afe2b16 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G08_628514.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-10A TCGA-A8-A09Q-10A-01D-A012-01 7bf1b0b4-51ad-4c9b-91aa-76342afe2b16 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G08_628514.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-10A TCGA-A8-A09Q-10A-01D-A012-01 7bf1b0b4-51ad-4c9b-91aa-76342afe2b16 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G08_628514.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-10A TCGA-A8-A09Q-10A-01D-A012-01 7bf1b0b4-51ad-4c9b-91aa-76342afe2b16 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G08_628514.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-10A TCGA-A8-A09Q-10A-01D-A017-09 036a525a-56d3-4329-83ba-681514c8892e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-10A TCGA-A8-A09Q-10A-01D-A018-08 451f4aea-3cac-453f-bd7b-1b352b04ed94 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-10A TCGA-A8-A09Q-10A-01D-A069-02 a202ffa5-88e5-4bcc-b818-f986ff3f1b81 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-10A TCGA-A8-A09Q-10A-01W-A021-09 c8f39b5b-9f03-44d5-99c4-23d0090e45d2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-10A TCGA-A8-A09Q-10A-01W-A021-09 c8f39b5b-9f03-44d5-99c4-23d0090e45d2 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-10A TCGA-A8-A09Q-10A-01W-A022-08 7fec58e6-cf22-4714-917b-80e0cba46b51 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-10A TCGA-A8-A09Q-10A-01X-A025-09 32ae075d-5c02-4260-a354-b1477cb63605 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Q TCGA-A8-A09Q-10A TCGA-A8-A09Q-10A-01X-A026-08 d7b82a7e-f085-4e90-b90a-11ce60918f02 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11D-A00Y-05 de780a22-cced-45f0-8302-f2b0045adedd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11D-A00Y-05 de780a22-cced-45f0-8302-f2b0045adedd DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A09R-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11D-A00Y-05 de780a22-cced-45f0-8302-f2b0045adedd DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A09R-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11D-A00Y-05 de780a22-cced-45f0-8302-f2b0045adedd DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A09R-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11D-A011-01 c7064fcd-f96a-4977-8782-9131dfdf843e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11D-A011-01 c7064fcd-f96a-4977-8782-9131dfdf843e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C05_628498.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11D-A011-01 c7064fcd-f96a-4977-8782-9131dfdf843e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C05_628498.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11D-A011-01 c7064fcd-f96a-4977-8782-9131dfdf843e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C05_628498.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11D-A011-01 c7064fcd-f96a-4977-8782-9131dfdf843e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C05_628498.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11D-A011-01 c7064fcd-f96a-4977-8782-9131dfdf843e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C05_628498.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11D-A011-01 c7064fcd-f96a-4977-8782-9131dfdf843e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C05_628498.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11D-A011-01 c7064fcd-f96a-4977-8782-9131dfdf843e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C05_628498.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11D-A011-01 c7064fcd-f96a-4977-8782-9131dfdf843e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C05_628498.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11D-A015-09 e26adc23-62d3-421f-a3f7-7c12ae027237 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11D-A016-08 5502d1ed-0f18-4e82-8137-0f430fdd2a2c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11D-A068-02 f3968305-531b-4a67-90b1-d4f6bc17b80e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11R-A00Z-07 f4fcb7e1-20b8-4b66-86a2-1be81b06785e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11R-A00Z-07 f4fcb7e1-20b8-4b66-86a2-1be81b06785e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012012_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11R-A00Z-07 f4fcb7e1-20b8-4b66-86a2-1be81b06785e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012012_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11R-A00Z-07 f4fcb7e1-20b8-4b66-86a2-1be81b06785e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012012_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11R-A00Z-07 f4fcb7e1-20b8-4b66-86a2-1be81b06785e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445510.TCGA-A8-A09R-01A-11R-A00Z-07.110310_UNC12-SN629_0069_AB05L5ABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11R-A00Z-07 f4fcb7e1-20b8-4b66-86a2-1be81b06785e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445533.TCGA-A8-A09R-01A-11R-A00Z-07.110310_UNC12-SN629_0069_AB05L5ABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11R-A00Z-07 f4fcb7e1-20b8-4b66-86a2-1be81b06785e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445568.TCGA-A8-A09R-01A-11R-A00Z-07.110310_UNC12-SN629_0069_AB05L5ABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11R-A010-13 6f0fcf5c-2dbe-4e1a-a52b-0dba3c9ed8fc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11R-A010-13 6f0fcf5c-2dbe-4e1a-a52b-0dba3c9ed8fc miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09R-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11R-A010-13 6f0fcf5c-2dbe-4e1a-a52b-0dba3c9ed8fc miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09R-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11W-A019-09 35ebf91d-6fec-4d28-9b21-493d0e14f8db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11W-A019-09 35ebf91d-6fec-4d28-9b21-493d0e14f8db Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11W-A020-08 c2b5e902-df5d-49bd-90bd-bb70eb4445e5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11X-A023-09 703d0a20-7085-4ef6-938f-e2242c692423 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09R TCGA-A8-A09R-01A TCGA-A8-A09R-01A-11X-A024-08 207190f0-b66b-479f-aeba-f9d14daf4d1e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09R TCGA-A8-A09R-10A TCGA-A8-A09R-10A-01D-A012-01 82a19b67-e396-49f6-bb7b-418e58089356 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09R TCGA-A8-A09R-10A TCGA-A8-A09R-10A-01D-A012-01 82a19b67-e396-49f6-bb7b-418e58089356 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H07_628464.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A09R TCGA-A8-A09R-10A TCGA-A8-A09R-10A-01D-A012-01 82a19b67-e396-49f6-bb7b-418e58089356 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H07_628464.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09R TCGA-A8-A09R-10A TCGA-A8-A09R-10A-01D-A012-01 82a19b67-e396-49f6-bb7b-418e58089356 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H07_628464.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09R TCGA-A8-A09R-10A TCGA-A8-A09R-10A-01D-A012-01 82a19b67-e396-49f6-bb7b-418e58089356 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H07_628464.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09R TCGA-A8-A09R-10A TCGA-A8-A09R-10A-01D-A012-01 82a19b67-e396-49f6-bb7b-418e58089356 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H07_628464.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09R TCGA-A8-A09R-10A TCGA-A8-A09R-10A-01D-A012-01 82a19b67-e396-49f6-bb7b-418e58089356 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H07_628464.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09R TCGA-A8-A09R-10A TCGA-A8-A09R-10A-01D-A012-01 82a19b67-e396-49f6-bb7b-418e58089356 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H07_628464.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09R TCGA-A8-A09R-10A TCGA-A8-A09R-10A-01D-A012-01 82a19b67-e396-49f6-bb7b-418e58089356 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H07_628464.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A09R TCGA-A8-A09R-10A TCGA-A8-A09R-10A-01D-A017-09 1a038f15-d372-4886-a4d2-2bcccaaf92e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09R TCGA-A8-A09R-10A TCGA-A8-A09R-10A-01D-A018-08 5903ddd2-923d-422d-a155-3e3ae21ccdd4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09R TCGA-A8-A09R-10A TCGA-A8-A09R-10A-01D-A069-02 85219503-beed-41ca-a332-118b87afb253 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09R TCGA-A8-A09R-10A TCGA-A8-A09R-10A-01W-A021-09 1a2fb095-5cbc-40e1-92fd-60946a164d04 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09R TCGA-A8-A09R-10A TCGA-A8-A09R-10A-01W-A021-09 1a2fb095-5cbc-40e1-92fd-60946a164d04 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A09R TCGA-A8-A09R-10A TCGA-A8-A09R-10A-01W-A022-08 300d05ba-26ba-423c-aeae-8360cebc7438 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09R TCGA-A8-A09R-10A TCGA-A8-A09R-10A-01X-A025-09 68536eb6-26a6-45bd-893b-613a006d866d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09R TCGA-A8-A09R-10A TCGA-A8-A09R-10A-01X-A026-08 38cb1a76-b1e0-428b-9195-f6b93f164182 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11D-A00Y-05 39fb8866-ea8b-4d02-adec-504ffb834b97 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11D-A00Y-05 39fb8866-ea8b-4d02-adec-504ffb834b97 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A09T-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11D-A00Y-05 39fb8866-ea8b-4d02-adec-504ffb834b97 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A09T-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11D-A00Y-05 39fb8866-ea8b-4d02-adec-504ffb834b97 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A09T-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11D-A011-01 63eeed5c-ee46-43e0-8886-3ad9b50634e3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11D-A011-01 63eeed5c-ee46-43e0-8886-3ad9b50634e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H12_628496.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11D-A011-01 63eeed5c-ee46-43e0-8886-3ad9b50634e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H12_628496.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11D-A011-01 63eeed5c-ee46-43e0-8886-3ad9b50634e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H12_628496.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11D-A011-01 63eeed5c-ee46-43e0-8886-3ad9b50634e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H12_628496.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11D-A011-01 63eeed5c-ee46-43e0-8886-3ad9b50634e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H12_628496.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11D-A011-01 63eeed5c-ee46-43e0-8886-3ad9b50634e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H12_628496.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11D-A011-01 63eeed5c-ee46-43e0-8886-3ad9b50634e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H12_628496.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11D-A011-01 63eeed5c-ee46-43e0-8886-3ad9b50634e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H12_628496.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11D-A015-09 49b55cd0-5a4f-4cb0-b98d-4460b2f17aac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11D-A016-08 58772bf9-c817-43b8-821a-1e900ec2da10 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11D-A068-02 0a2d600d-ffe0-46f7-a460-48ab5ef4cc2a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11R-A00Z-07 c14f7362-25c3-4e1a-acd7-871bb22ea8a3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11R-A00Z-07 c14f7362-25c3-4e1a-acd7-871bb22ea8a3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011822_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11R-A00Z-07 c14f7362-25c3-4e1a-acd7-871bb22ea8a3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011822_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11R-A00Z-07 c14f7362-25c3-4e1a-acd7-871bb22ea8a3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011822_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11R-A010-13 18cc2ee4-fc31-4500-a62b-2d20d74ceedb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11R-A010-13 18cc2ee4-fc31-4500-a62b-2d20d74ceedb miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09T-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11R-A010-13 18cc2ee4-fc31-4500-a62b-2d20d74ceedb miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09T-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11W-A019-09 e565da2b-4a3f-4be1-9cf7-2845145d1dbc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11W-A019-09 e565da2b-4a3f-4be1-9cf7-2845145d1dbc Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11W-A020-08 2d41c715-e03a-49db-a602-fb0516e979f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11X-A023-09 31d9e4ec-181e-473d-8c97-d6ff45693bf9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09T TCGA-A8-A09T-01A TCGA-A8-A09T-01A-11X-A024-08 d4eaec25-70c6-4923-9d15-27968117f4cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09T TCGA-A8-A09T-10A TCGA-A8-A09T-10A-01D-A012-01 090ba620-007d-4fbf-a980-3eda4ef312e9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09T TCGA-A8-A09T-10A TCGA-A8-A09T-10A-01D-A012-01 090ba620-007d-4fbf-a980-3eda4ef312e9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A05_628560.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A09T TCGA-A8-A09T-10A TCGA-A8-A09T-10A-01D-A012-01 090ba620-007d-4fbf-a980-3eda4ef312e9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A05_628560.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09T TCGA-A8-A09T-10A TCGA-A8-A09T-10A-01D-A012-01 090ba620-007d-4fbf-a980-3eda4ef312e9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A05_628560.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09T TCGA-A8-A09T-10A TCGA-A8-A09T-10A-01D-A012-01 090ba620-007d-4fbf-a980-3eda4ef312e9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A05_628560.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09T TCGA-A8-A09T-10A TCGA-A8-A09T-10A-01D-A012-01 090ba620-007d-4fbf-a980-3eda4ef312e9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A05_628560.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09T TCGA-A8-A09T-10A TCGA-A8-A09T-10A-01D-A012-01 090ba620-007d-4fbf-a980-3eda4ef312e9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A05_628560.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09T TCGA-A8-A09T-10A TCGA-A8-A09T-10A-01D-A012-01 090ba620-007d-4fbf-a980-3eda4ef312e9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A05_628560.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09T TCGA-A8-A09T-10A TCGA-A8-A09T-10A-01D-A012-01 090ba620-007d-4fbf-a980-3eda4ef312e9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A05_628560.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A09T TCGA-A8-A09T-10A TCGA-A8-A09T-10A-01D-A017-09 c7df5fdb-d40c-40b1-9072-c9b35001e00b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09T TCGA-A8-A09T-10A TCGA-A8-A09T-10A-01D-A018-08 34dd3f18-6641-4f0f-a661-ce7761bae93d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09T TCGA-A8-A09T-10A TCGA-A8-A09T-10A-01D-A069-02 e63fd50d-3023-4d97-bbec-c84a217d972c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09T TCGA-A8-A09T-10A TCGA-A8-A09T-10A-01W-A021-09 8c267083-4672-4f9e-b5ec-19a13e897f78 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09T TCGA-A8-A09T-10A TCGA-A8-A09T-10A-01W-A021-09 8c267083-4672-4f9e-b5ec-19a13e897f78 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A09T TCGA-A8-A09T-10A TCGA-A8-A09T-10A-01W-A022-08 d8cedf45-7286-4c70-a1f3-07444099faa8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09T TCGA-A8-A09T-10A TCGA-A8-A09T-10A-01X-A025-09 82d013c6-29a0-4ddd-b8f1-14263d257db9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09T TCGA-A8-A09T-10A TCGA-A8-A09T-10A-01X-A026-08 df1fcfc1-bbc8-4982-8cf0-c5bd56a26ac4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09V TCGA-A8-A09V-01A TCGA-A8-A09V-01A-11D-A032-05 e54c9869-15de-4939-83cd-275c5ce3da56 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A09V TCGA-A8-A09V-01A TCGA-A8-A09V-01A-11D-A032-05 e54c9869-15de-4939-83cd-275c5ce3da56 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A8-A09V-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A8-A09V TCGA-A8-A09V-01A TCGA-A8-A09V-01A-11D-A032-05 e54c9869-15de-4939-83cd-275c5ce3da56 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A8-A09V-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A8-A09V TCGA-A8-A09V-01A TCGA-A8-A09V-01A-11D-A032-05 e54c9869-15de-4939-83cd-275c5ce3da56 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A8-A09V-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A8-A09V TCGA-A8-A09V-01A TCGA-A8-A09V-01A-11D-A033-02 6db30518-2330-416a-91d5-6101a10260a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A09V TCGA-A8-A09V-01A TCGA-A8-A09V-01A-11D-A036-01 72d21cce-e233-49e4-8277-aa1b0be0a160 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A09V TCGA-A8-A09V-01A TCGA-A8-A09V-01A-11D-A036-01 72d21cce-e233-49e4-8277-aa1b0be0a160 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C12_666880.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A8-A09V TCGA-A8-A09V-01A TCGA-A8-A09V-01A-11D-A036-01 72d21cce-e233-49e4-8277-aa1b0be0a160 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C12_666880.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A09V TCGA-A8-A09V-01A TCGA-A8-A09V-01A-11D-A036-01 72d21cce-e233-49e4-8277-aa1b0be0a160 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C12_666880.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A09V TCGA-A8-A09V-01A TCGA-A8-A09V-01A-11D-A036-01 72d21cce-e233-49e4-8277-aa1b0be0a160 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C12_666880.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A09V TCGA-A8-A09V-01A TCGA-A8-A09V-01A-11D-A036-01 72d21cce-e233-49e4-8277-aa1b0be0a160 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C12_666880.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A09V TCGA-A8-A09V-01A TCGA-A8-A09V-01A-11D-A036-01 72d21cce-e233-49e4-8277-aa1b0be0a160 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C12_666880.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A8-A09V TCGA-A8-A09V-01A TCGA-A8-A09V-01A-11D-A044-08 29eef4f6-dd39-480a-9899-e18eeb9dc733 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A09V TCGA-A8-A09V-01A TCGA-A8-A09V-01A-11D-A045-09 818f1a34-17c5-409a-b5f5-4a8576db0d44 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A09V TCGA-A8-A09V-01A TCGA-A8-A09V-01A-11D-A045-09 818f1a34-17c5-409a-b5f5-4a8576db0d44 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A09V TCGA-A8-A09V-01A TCGA-A8-A09V-01A-11R-A034-07 416041ff-f179-4c72-a281-f39d32c595c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A09V TCGA-A8-A09V-01A TCGA-A8-A09V-01A-11R-A034-07 416041ff-f179-4c72-a281-f39d32c595c1 Expression-Genes AgilentG4502A_07_3 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011897_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A09V TCGA-A8-A09V-01A TCGA-A8-A09V-01A-11R-A034-07 416041ff-f179-4c72-a281-f39d32c595c1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_656025.TCGA-A8-A09V-01A-11R-A034-07.110302_UNC11-SN627_0067_BB04EPABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09V TCGA-A8-A09V-01A TCGA-A8-A09V-01A-11R-A034-07 416041ff-f179-4c72-a281-f39d32c595c1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_656323.TCGA-A8-A09V-01A-11R-A034-07.110302_UNC11-SN627_0067_BB04EPABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09V TCGA-A8-A09V-01A TCGA-A8-A09V-01A-11R-A034-07 416041ff-f179-4c72-a281-f39d32c595c1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_656852.TCGA-A8-A09V-01A-11R-A034-07.110302_UNC11-SN627_0067_BB04EPABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09V TCGA-A8-A09V-01A TCGA-A8-A09V-01A-11R-A035-13 c0dce921-2636-43ae-8ade-29d39a5b39cb Complete Clinical Set bio 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1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A09V TCGA-A8-A09V-01A TCGA-A8-A09V-01A-11X-A048-08 a718726e-ec7e-4cdf-bf5d-2be6ff772947 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A09V TCGA-A8-A09V-01A TCGA-A8-A09V-01A-11X-A049-09 abdcb152-bf39-4be9-a9d1-e15bd8edba5e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A09V TCGA-A8-A09V-10A TCGA-A8-A09V-10A-01D-A031-02 91603178-6060-4dde-964e-a9af9d2a81ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A09V TCGA-A8-A09V-10A TCGA-A8-A09V-10A-01D-A037-01 4b09d6e9-cb23-4744-8b0b-e7a8358ee059 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A09V TCGA-A8-A09V-10A TCGA-A8-A09V-10A-01D-A037-01 4b09d6e9-cb23-4744-8b0b-e7a8358ee059 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H06_666958.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A8-A09V TCGA-A8-A09V-10A TCGA-A8-A09V-10A-01D-A037-01 4b09d6e9-cb23-4744-8b0b-e7a8358ee059 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H06_666958.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A09V TCGA-A8-A09V-10A TCGA-A8-A09V-10A-01D-A037-01 4b09d6e9-cb23-4744-8b0b-e7a8358ee059 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H06_666958.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A09V TCGA-A8-A09V-10A TCGA-A8-A09V-10A-01D-A037-01 4b09d6e9-cb23-4744-8b0b-e7a8358ee059 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H06_666958.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A09V TCGA-A8-A09V-10A TCGA-A8-A09V-10A-01D-A037-01 4b09d6e9-cb23-4744-8b0b-e7a8358ee059 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H06_666958.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A09V TCGA-A8-A09V-10A TCGA-A8-A09V-10A-01D-A037-01 4b09d6e9-cb23-4744-8b0b-e7a8358ee059 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H06_666958.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A09V TCGA-A8-A09V-10A TCGA-A8-A09V-10A-01D-A037-01 4b09d6e9-cb23-4744-8b0b-e7a8358ee059 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H06_666958.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A09V TCGA-A8-A09V-10A TCGA-A8-A09V-10A-01D-A037-01 4b09d6e9-cb23-4744-8b0b-e7a8358ee059 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H06_666958.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A8-A09V TCGA-A8-A09V-10A TCGA-A8-A09V-10A-01D-A046-08 d89a2a9b-89d6-4c57-a300-885e45d5717a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A09V TCGA-A8-A09V-10A TCGA-A8-A09V-10A-01D-A047-09 4e903a59-9bb0-4714-8da6-326061433a24 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A09V TCGA-A8-A09V-10A TCGA-A8-A09V-10A-01W-A053-08 218592c6-4b46-45a8-b546-87066b246921 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A09V TCGA-A8-A09V-10A TCGA-A8-A09V-10A-01W-A055-09 410ed951-300a-4227-bc61-52a1649301f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A09V TCGA-A8-A09V-10A TCGA-A8-A09V-10A-01W-A055-09 410ed951-300a-4227-bc61-52a1649301f6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A09V TCGA-A8-A09V-10A TCGA-A8-A09V-10A-01X-A052-08 6330d209-23b3-445c-abd3-6cc45bd74f89 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A09V TCGA-A8-A09V-10A TCGA-A8-A09V-10A-01X-A054-09 ff7e3b09-f8fd-4ba6-8fe9-d66428447a3e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A09W TCGA-A8-A09W-01A TCGA-A8-A09W-01A-11D-A00Y-05 29f4854c-86af-415d-b549-badc65dca117 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09W TCGA-A8-A09W-01A TCGA-A8-A09W-01A-11D-A00Y-05 29f4854c-86af-415d-b549-badc65dca117 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A09W-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A09W TCGA-A8-A09W-01A TCGA-A8-A09W-01A-11D-A00Y-05 29f4854c-86af-415d-b549-badc65dca117 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A09W-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A09W TCGA-A8-A09W-01A TCGA-A8-A09W-01A-11D-A00Y-05 29f4854c-86af-415d-b549-badc65dca117 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A09W-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A09W TCGA-A8-A09W-01A TCGA-A8-A09W-01A-11D-A011-01 51f01aa5-6fd7-4f74-ba41-603e338b3ed1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09W TCGA-A8-A09W-01A TCGA-A8-A09W-01A-11D-A011-01 51f01aa5-6fd7-4f74-ba41-603e338b3ed1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F10_628470.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A09W TCGA-A8-A09W-01A TCGA-A8-A09W-01A-11D-A011-01 51f01aa5-6fd7-4f74-ba41-603e338b3ed1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F10_628470.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09W TCGA-A8-A09W-01A TCGA-A8-A09W-01A-11D-A011-01 51f01aa5-6fd7-4f74-ba41-603e338b3ed1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F10_628470.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09W TCGA-A8-A09W-01A TCGA-A8-A09W-01A-11D-A011-01 51f01aa5-6fd7-4f74-ba41-603e338b3ed1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F10_628470.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09W TCGA-A8-A09W-01A TCGA-A8-A09W-01A-11D-A011-01 51f01aa5-6fd7-4f74-ba41-603e338b3ed1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F10_628470.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09W TCGA-A8-A09W-01A TCGA-A8-A09W-01A-11D-A011-01 51f01aa5-6fd7-4f74-ba41-603e338b3ed1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F10_628470.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09W TCGA-A8-A09W-01A TCGA-A8-A09W-01A-11D-A011-01 51f01aa5-6fd7-4f74-ba41-603e338b3ed1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F10_628470.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09W TCGA-A8-A09W-01A TCGA-A8-A09W-01A-11D-A011-01 51f01aa5-6fd7-4f74-ba41-603e338b3ed1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F10_628470.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A09W TCGA-A8-A09W-01A TCGA-A8-A09W-01A-11D-A015-09 a9575e33-6092-42f5-8a87-3fc8bab348df Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09W TCGA-A8-A09W-01A TCGA-A8-A09W-01A-11D-A016-08 228ca6a3-8e89-4a54-9a28-d3885e1ec70d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09W TCGA-A8-A09W-01A TCGA-A8-A09W-01A-11D-A068-02 14a93a19-3232-4a1c-9359-293b759b43a7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09W TCGA-A8-A09W-01A TCGA-A8-A09W-01A-11R-A00Z-07 aaec0cbc-a493-48f4-9cc7-32629880ee24 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09W TCGA-A8-A09W-01A TCGA-A8-A09W-01A-11R-A00Z-07 aaec0cbc-a493-48f4-9cc7-32629880ee24 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011813_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A09W TCGA-A8-A09W-01A TCGA-A8-A09W-01A-11R-A00Z-07 aaec0cbc-a493-48f4-9cc7-32629880ee24 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011813_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A09W TCGA-A8-A09W-01A TCGA-A8-A09W-01A-11R-A00Z-07 aaec0cbc-a493-48f4-9cc7-32629880ee24 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011813_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A09W TCGA-A8-A09W-01A TCGA-A8-A09W-01A-11R-A010-13 a45f608b-60b7-45da-8de0-f360e9f425ac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09W TCGA-A8-A09W-01A TCGA-A8-A09W-01A-11W-A019-09 9a2690ce-485f-4d4f-9673-d86f91be27a4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09W TCGA-A8-A09W-01A TCGA-A8-A09W-01A-11W-A019-09 9a2690ce-485f-4d4f-9673-d86f91be27a4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A09W TCGA-A8-A09W-01A TCGA-A8-A09W-01A-11W-A020-08 fa5478cf-ed24-4ea8-9143-1eca8c40776e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09W TCGA-A8-A09W-01A TCGA-A8-A09W-01A-11X-A023-09 a82e2e2b-1b9f-424c-b445-1fb57b0506dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09W TCGA-A8-A09W-01A TCGA-A8-A09W-01A-11X-A024-08 ec593778-f10c-4cfe-9bdc-82779d177b79 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09W TCGA-A8-A09W-10A TCGA-A8-A09W-10A-01D-A012-01 022439b2-d8e6-4ee4-9be8-23c08de629ea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09W TCGA-A8-A09W-10A TCGA-A8-A09W-10A-01D-A012-01 022439b2-d8e6-4ee4-9be8-23c08de629ea SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G04_628506.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A09W TCGA-A8-A09W-10A TCGA-A8-A09W-10A-01D-A012-01 022439b2-d8e6-4ee4-9be8-23c08de629ea SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G04_628506.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09W TCGA-A8-A09W-10A TCGA-A8-A09W-10A-01D-A012-01 022439b2-d8e6-4ee4-9be8-23c08de629ea SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G04_628506.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09W TCGA-A8-A09W-10A TCGA-A8-A09W-10A-01D-A012-01 022439b2-d8e6-4ee4-9be8-23c08de629ea SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G04_628506.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09W TCGA-A8-A09W-10A TCGA-A8-A09W-10A-01D-A012-01 022439b2-d8e6-4ee4-9be8-23c08de629ea SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G04_628506.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09W TCGA-A8-A09W-10A TCGA-A8-A09W-10A-01D-A012-01 022439b2-d8e6-4ee4-9be8-23c08de629ea SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G04_628506.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09W TCGA-A8-A09W-10A TCGA-A8-A09W-10A-01D-A012-01 022439b2-d8e6-4ee4-9be8-23c08de629ea SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G04_628506.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09W TCGA-A8-A09W-10A TCGA-A8-A09W-10A-01D-A012-01 022439b2-d8e6-4ee4-9be8-23c08de629ea SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G04_628506.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A09W TCGA-A8-A09W-10A TCGA-A8-A09W-10A-01D-A017-09 93a23829-1d56-4b1b-aa99-920f31b85995 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09W TCGA-A8-A09W-10A TCGA-A8-A09W-10A-01D-A018-08 b1e04fa8-fcd5-46e3-8f25-2bfe40df26c6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09W TCGA-A8-A09W-10A TCGA-A8-A09W-10A-01D-A069-02 14d00e61-efe9-44ce-8c5a-e5083e636303 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09W TCGA-A8-A09W-10A TCGA-A8-A09W-10A-01W-A021-09 e6862e84-130f-487b-8d60-43c783d2a8bf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09W TCGA-A8-A09W-10A TCGA-A8-A09W-10A-01W-A021-09 e6862e84-130f-487b-8d60-43c783d2a8bf Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A09W TCGA-A8-A09W-10A TCGA-A8-A09W-10A-01W-A022-08 4e3e8dbc-5dcc-4b75-9f23-db85d85b3601 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09W TCGA-A8-A09W-10A TCGA-A8-A09W-10A-01X-A025-09 5efecc58-4a00-46d5-bd03-c374e1fb6db4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09W TCGA-A8-A09W-10A TCGA-A8-A09W-10A-01X-A026-08 bd327e78-4c31-419c-b952-bef5b482d095 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11D-A00Y-05 e0fda5ec-56e0-4f9b-970a-6fba9ab45056 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11D-A00Y-05 e0fda5ec-56e0-4f9b-970a-6fba9ab45056 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A09X-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11D-A00Y-05 e0fda5ec-56e0-4f9b-970a-6fba9ab45056 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A09X-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11D-A00Y-05 e0fda5ec-56e0-4f9b-970a-6fba9ab45056 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A09X-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11D-A011-01 aff06258-5ee9-4f2b-8947-f296ca0b34f3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11D-A011-01 aff06258-5ee9-4f2b-8947-f296ca0b34f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H10_628490.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11D-A011-01 aff06258-5ee9-4f2b-8947-f296ca0b34f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H10_628490.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11D-A011-01 aff06258-5ee9-4f2b-8947-f296ca0b34f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H10_628490.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11D-A011-01 aff06258-5ee9-4f2b-8947-f296ca0b34f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H10_628490.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11D-A011-01 aff06258-5ee9-4f2b-8947-f296ca0b34f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H10_628490.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11D-A011-01 aff06258-5ee9-4f2b-8947-f296ca0b34f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H10_628490.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11D-A011-01 aff06258-5ee9-4f2b-8947-f296ca0b34f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H10_628490.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11D-A011-01 aff06258-5ee9-4f2b-8947-f296ca0b34f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H10_628490.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11D-A015-09 5362adb5-ab1b-4795-9e2c-c8cc427db049 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11D-A016-08 2ba331ad-97f0-4428-89bd-3054a046aea1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11D-A068-02 cda87131-afc3-44be-af75-cdb676c26d43 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11D-A19H-09 6dbc5c31-043b-40e9-bf1a-e7b4ec351b4d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11R-A00Z-07 f97f68be-6838-455c-91bf-7549543a82c3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11R-A00Z-07 f97f68be-6838-455c-91bf-7549543a82c3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011842_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11R-A00Z-07 f97f68be-6838-455c-91bf-7549543a82c3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011842_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11R-A00Z-07 f97f68be-6838-455c-91bf-7549543a82c3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011842_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11R-A00Z-07 f97f68be-6838-455c-91bf-7549543a82c3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593403.TCGA-A8-A09X-01A-11R-A00Z-07.110225_SN254_0195_A81LH6ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11R-A00Z-07 f97f68be-6838-455c-91bf-7549543a82c3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593409.TCGA-A8-A09X-01A-11R-A00Z-07.110225_SN254_0195_A81LH6ABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11R-A00Z-07 f97f68be-6838-455c-91bf-7549543a82c3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593419.TCGA-A8-A09X-01A-11R-A00Z-07.110225_SN254_0195_A81LH6ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11R-A010-13 866bd35c-86be-4d13-8edf-be02ff3a22d8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11R-A010-13 866bd35c-86be-4d13-8edf-be02ff3a22d8 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09X-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11R-A010-13 866bd35c-86be-4d13-8edf-be02ff3a22d8 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09X-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11W-A019-09 48e532ea-2af5-427a-a784-781e208cced6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11W-A019-09 48e532ea-2af5-427a-a784-781e208cced6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11W-A020-08 0862b7c3-4b79-4831-811c-75fab9504a76 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11X-A023-09 1d1b9769-3749-4a6f-8801-e568aaf7cfec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09X TCGA-A8-A09X-01A TCGA-A8-A09X-01A-11X-A024-08 74bdb9d8-9595-4096-a299-12959c7e0a9c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09X TCGA-A8-A09X-10A TCGA-A8-A09X-10A-01D-A012-01 f5da7273-4f0f-466d-8d18-540be8d355a3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09X TCGA-A8-A09X-10A TCGA-A8-A09X-10A-01D-A012-01 f5da7273-4f0f-466d-8d18-540be8d355a3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C09_628510.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A09X TCGA-A8-A09X-10A TCGA-A8-A09X-10A-01D-A012-01 f5da7273-4f0f-466d-8d18-540be8d355a3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C09_628510.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09X TCGA-A8-A09X-10A TCGA-A8-A09X-10A-01D-A012-01 f5da7273-4f0f-466d-8d18-540be8d355a3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C09_628510.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09X TCGA-A8-A09X-10A TCGA-A8-A09X-10A-01D-A012-01 f5da7273-4f0f-466d-8d18-540be8d355a3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C09_628510.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09X TCGA-A8-A09X-10A TCGA-A8-A09X-10A-01D-A012-01 f5da7273-4f0f-466d-8d18-540be8d355a3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C09_628510.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09X TCGA-A8-A09X-10A TCGA-A8-A09X-10A-01D-A012-01 f5da7273-4f0f-466d-8d18-540be8d355a3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C09_628510.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09X TCGA-A8-A09X-10A TCGA-A8-A09X-10A-01D-A012-01 f5da7273-4f0f-466d-8d18-540be8d355a3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C09_628510.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09X TCGA-A8-A09X-10A TCGA-A8-A09X-10A-01D-A012-01 f5da7273-4f0f-466d-8d18-540be8d355a3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C09_628510.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A09X TCGA-A8-A09X-10A TCGA-A8-A09X-10A-01D-A017-09 c168b6c0-c2a3-4b61-b7b3-8c3e00d00071 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09X TCGA-A8-A09X-10A TCGA-A8-A09X-10A-01D-A018-08 4e7c80db-bb46-4b0a-ae31-39d26c4a98b3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09X TCGA-A8-A09X-10A TCGA-A8-A09X-10A-01D-A069-02 8fe6cbe8-e9e9-44b5-8859-5d12a7128c84 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09X TCGA-A8-A09X-10A TCGA-A8-A09X-10A-01D-A19H-09 c89cde14-d56d-4ad6-9cbb-c809dbb7d77c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09X TCGA-A8-A09X-10A TCGA-A8-A09X-10A-01W-A021-09 a0a00bdd-dfc0-4707-9491-d509f218d623 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09X TCGA-A8-A09X-10A TCGA-A8-A09X-10A-01W-A021-09 a0a00bdd-dfc0-4707-9491-d509f218d623 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A09X TCGA-A8-A09X-10A TCGA-A8-A09X-10A-01W-A022-08 4fe96520-5941-4b91-92a3-bfe3e7aa34f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09X TCGA-A8-A09X-10A TCGA-A8-A09X-10A-01X-A025-09 62378fb2-5d79-407d-afa9-212404f1a0f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09X TCGA-A8-A09X-10A TCGA-A8-A09X-10A-01X-A026-08 0a06f9f5-1f5e-4a5f-8d00-4f5cecf79367 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11D-A00Y-05 4d8bf51e-53f7-4741-a125-11bf61138fff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11D-A00Y-05 4d8bf51e-53f7-4741-a125-11bf61138fff DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A09Z-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11D-A00Y-05 4d8bf51e-53f7-4741-a125-11bf61138fff DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A09Z-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11D-A00Y-05 4d8bf51e-53f7-4741-a125-11bf61138fff DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A09Z-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11D-A011-01 6696111b-ca51-4c58-806d-2d5faa3a9456 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11D-A011-01 6696111b-ca51-4c58-806d-2d5faa3a9456 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F06_628482.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11D-A011-01 6696111b-ca51-4c58-806d-2d5faa3a9456 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F06_628482.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11D-A011-01 6696111b-ca51-4c58-806d-2d5faa3a9456 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F06_628482.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11D-A011-01 6696111b-ca51-4c58-806d-2d5faa3a9456 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F06_628482.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11D-A011-01 6696111b-ca51-4c58-806d-2d5faa3a9456 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F06_628482.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11D-A011-01 6696111b-ca51-4c58-806d-2d5faa3a9456 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F06_628482.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11D-A011-01 6696111b-ca51-4c58-806d-2d5faa3a9456 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F06_628482.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11D-A011-01 6696111b-ca51-4c58-806d-2d5faa3a9456 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F06_628482.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11D-A015-09 c682a41c-bc69-420d-91ef-cd0f6d4ef266 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11D-A016-08 7fbae9a6-17e1-475a-a40f-2931cccc2300 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11D-A068-02 335c047c-5e3d-425f-abda-a27c02a3e861 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11R-A00Z-07 2c3ad15f-0d26-441e-8139-85194b3389f2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11R-A00Z-07 2c3ad15f-0d26-441e-8139-85194b3389f2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011855_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11R-A00Z-07 2c3ad15f-0d26-441e-8139-85194b3389f2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011855_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11R-A00Z-07 2c3ad15f-0d26-441e-8139-85194b3389f2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011855_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11R-A010-13 4a2e45f4-ed7f-4c3c-b75e-f9dc23746294 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11R-A010-13 4a2e45f4-ed7f-4c3c-b75e-f9dc23746294 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09Z-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11R-A010-13 4a2e45f4-ed7f-4c3c-b75e-f9dc23746294 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A09Z-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11W-A019-09 8a59b247-da3f-4334-ad5c-f43f86164d5b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11W-A020-08 1e7b87f9-6099-4231-8e05-454801af47d1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11X-A023-09 4427d3ae-8763-4f0d-9bad-bf7fab675de0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-01A TCGA-A8-A09Z-01A-11X-A024-08 ad83cc06-0e4b-4d8b-831a-1eb1bf22e8e8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-10A TCGA-A8-A09Z-10A-01D-A012-01 1be64525-963e-4a96-bd02-7d4373f83281 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-10A TCGA-A8-A09Z-10A-01D-A012-01 1be64525-963e-4a96-bd02-7d4373f83281 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D09_628436.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A09Z TCGA-A8-A09Z-10A TCGA-A8-A09Z-10A-01D-A012-01 1be64525-963e-4a96-bd02-7d4373f83281 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D09_628436.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-10A TCGA-A8-A09Z-10A-01D-A012-01 1be64525-963e-4a96-bd02-7d4373f83281 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D09_628436.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-10A TCGA-A8-A09Z-10A-01D-A012-01 1be64525-963e-4a96-bd02-7d4373f83281 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D09_628436.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-10A TCGA-A8-A09Z-10A-01D-A012-01 1be64525-963e-4a96-bd02-7d4373f83281 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D09_628436.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-10A TCGA-A8-A09Z-10A-01D-A012-01 1be64525-963e-4a96-bd02-7d4373f83281 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D09_628436.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-10A TCGA-A8-A09Z-10A-01D-A012-01 1be64525-963e-4a96-bd02-7d4373f83281 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D09_628436.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-10A TCGA-A8-A09Z-10A-01D-A012-01 1be64525-963e-4a96-bd02-7d4373f83281 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D09_628436.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-10A TCGA-A8-A09Z-10A-01D-A017-09 6169e5b9-9850-4631-9b1e-b98b6c444a43 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-10A TCGA-A8-A09Z-10A-01D-A018-08 9e8893dc-665b-4225-964c-e863fc123299 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-10A TCGA-A8-A09Z-10A-01D-A069-02 e1479cb8-9ddc-484b-8ccb-ad522c319196 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-10A TCGA-A8-A09Z-10A-01W-A021-09 9e2abf15-6ef5-43a4-a4cb-60813371b770 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-10A TCGA-A8-A09Z-10A-01W-A022-08 cc816755-7503-47bf-933c-1fd975f2c9ce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-10A TCGA-A8-A09Z-10A-01X-A025-09 6773c8bb-4026-479e-9c82-a633cca39519 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A09Z TCGA-A8-A09Z-10A TCGA-A8-A09Z-10A-01X-A026-08 e3113372-4c40-49d5-a8e4-31bb506c9b98 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A09Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11D-A00Y-05 e661c00d-adce-4d0f-8877-e7b1b320f5a7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11D-A00Y-05 e661c00d-adce-4d0f-8877-e7b1b320f5a7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A0A1-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11D-A00Y-05 e661c00d-adce-4d0f-8877-e7b1b320f5a7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A0A1-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11D-A00Y-05 e661c00d-adce-4d0f-8877-e7b1b320f5a7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A0A1-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11D-A011-01 ebcb8722-05fc-441d-a13a-1fb5c8f1228f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11D-A011-01 ebcb8722-05fc-441d-a13a-1fb5c8f1228f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D10_628478.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11D-A011-01 ebcb8722-05fc-441d-a13a-1fb5c8f1228f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D10_628478.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11D-A011-01 ebcb8722-05fc-441d-a13a-1fb5c8f1228f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D10_628478.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11D-A011-01 ebcb8722-05fc-441d-a13a-1fb5c8f1228f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D10_628478.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11D-A011-01 ebcb8722-05fc-441d-a13a-1fb5c8f1228f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D10_628478.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11D-A011-01 ebcb8722-05fc-441d-a13a-1fb5c8f1228f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D10_628478.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11D-A011-01 ebcb8722-05fc-441d-a13a-1fb5c8f1228f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D10_628478.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11D-A011-01 ebcb8722-05fc-441d-a13a-1fb5c8f1228f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D10_628478.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11D-A015-09 fe90615d-59df-4bfc-b63b-6ba631b2ccbd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11D-A016-08 11257f49-c025-44f8-b09c-62db15f363ee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11D-A068-02 46b5c41f-796c-4b20-87bf-f0498b40369d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11R-A00Z-07 8522865b-457c-4199-a870-bf8353f2b0a5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11R-A00Z-07 8522865b-457c-4199-a870-bf8353f2b0a5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011867_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11R-A00Z-07 8522865b-457c-4199-a870-bf8353f2b0a5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011867_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11R-A00Z-07 8522865b-457c-4199-a870-bf8353f2b0a5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011867_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11R-A00Z-07 8522865b-457c-4199-a870-bf8353f2b0a5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445544.TCGA-A8-A0A1-01A-11R-A00Z-07.110304_UNC12-SN629_0066_BC0086ABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11R-A00Z-07 8522865b-457c-4199-a870-bf8353f2b0a5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445555.TCGA-A8-A0A1-01A-11R-A00Z-07.110304_UNC12-SN629_0066_BC0086ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11R-A00Z-07 8522865b-457c-4199-a870-bf8353f2b0a5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445567.TCGA-A8-A0A1-01A-11R-A00Z-07.110304_UNC12-SN629_0066_BC0086ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11R-A010-13 336c780b-1612-4b32-be53-8d2121fcb873 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11R-A010-13 336c780b-1612-4b32-be53-8d2121fcb873 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A0A1-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11R-A010-13 336c780b-1612-4b32-be53-8d2121fcb873 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A0A1-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11W-A019-09 73aa20fe-b74b-41ae-88d3-2d5a66908c25 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11W-A019-09 73aa20fe-b74b-41ae-88d3-2d5a66908c25 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11W-A020-08 a52f58f7-790d-4383-b013-dcb8b41ece34 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11X-A023-09 b6b334a5-a8c7-40ca-8bf9-e520b1f91240 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-01A TCGA-A8-A0A1-01A-11X-A024-08 8ab15a9a-b828-47a2-9372-c5675d9450c7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-10A TCGA-A8-A0A1-10A-01D-A012-01 b1eaed7c-0d3a-4ccb-bc4c-0e6d81d16d56 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-10A TCGA-A8-A0A1-10A-01D-A012-01 b1eaed7c-0d3a-4ccb-bc4c-0e6d81d16d56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E09_628592.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A0A1 TCGA-A8-A0A1-10A TCGA-A8-A0A1-10A-01D-A012-01 b1eaed7c-0d3a-4ccb-bc4c-0e6d81d16d56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E09_628592.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-10A TCGA-A8-A0A1-10A-01D-A012-01 b1eaed7c-0d3a-4ccb-bc4c-0e6d81d16d56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E09_628592.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-10A TCGA-A8-A0A1-10A-01D-A012-01 b1eaed7c-0d3a-4ccb-bc4c-0e6d81d16d56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E09_628592.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-10A TCGA-A8-A0A1-10A-01D-A012-01 b1eaed7c-0d3a-4ccb-bc4c-0e6d81d16d56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E09_628592.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-10A TCGA-A8-A0A1-10A-01D-A012-01 b1eaed7c-0d3a-4ccb-bc4c-0e6d81d16d56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E09_628592.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-10A TCGA-A8-A0A1-10A-01D-A012-01 b1eaed7c-0d3a-4ccb-bc4c-0e6d81d16d56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E09_628592.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-10A TCGA-A8-A0A1-10A-01D-A012-01 b1eaed7c-0d3a-4ccb-bc4c-0e6d81d16d56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E09_628592.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-10A TCGA-A8-A0A1-10A-01D-A017-09 a07a800b-3e09-4177-8bf6-7bbb8675e6c7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-10A TCGA-A8-A0A1-10A-01D-A018-08 1551a075-a14e-4f47-bd6a-661456048dd5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-10A TCGA-A8-A0A1-10A-01D-A069-02 b4a54875-26d4-4c2d-b953-50e7b81608cc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-10A TCGA-A8-A0A1-10A-01W-A021-09 c356aae0-c3f1-4c70-962d-e0d592174bbc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-10A TCGA-A8-A0A1-10A-01W-A021-09 c356aae0-c3f1-4c70-962d-e0d592174bbc Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-10A TCGA-A8-A0A1-10A-01W-A022-08 47145be4-7ab0-4f3a-adf6-a629b0b4a100 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-10A TCGA-A8-A0A1-10A-01X-A025-09 dff6e9a6-ebc9-4bdd-bd0f-10698a1f0860 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A1 TCGA-A8-A0A1-10A TCGA-A8-A0A1-10A-01X-A026-08 52d3613f-bc44-471a-b9c5-a96c98f77e09 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11D-A032-05 063a6638-dda5-4c98-a19a-07e381cf9dd5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11D-A032-05 063a6638-dda5-4c98-a19a-07e381cf9dd5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A8-A0A2-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11D-A032-05 063a6638-dda5-4c98-a19a-07e381cf9dd5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A8-A0A2-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11D-A032-05 063a6638-dda5-4c98-a19a-07e381cf9dd5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A8-A0A2-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11D-A033-02 761b5fbb-8aa4-4259-b5da-067b3a964e6f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11D-A036-01 2c01b1ef-d826-4183-b79d-903d4fe5ef5e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11D-A036-01 2c01b1ef-d826-4183-b79d-903d4fe5ef5e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A05_666878.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11D-A036-01 2c01b1ef-d826-4183-b79d-903d4fe5ef5e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A05_666878.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11D-A036-01 2c01b1ef-d826-4183-b79d-903d4fe5ef5e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A05_666878.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11D-A036-01 2c01b1ef-d826-4183-b79d-903d4fe5ef5e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A05_666878.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11D-A036-01 2c01b1ef-d826-4183-b79d-903d4fe5ef5e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A05_666878.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11D-A036-01 2c01b1ef-d826-4183-b79d-903d4fe5ef5e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A05_666878.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11D-A036-01 2c01b1ef-d826-4183-b79d-903d4fe5ef5e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A05_666878.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11D-A036-01 2c01b1ef-d826-4183-b79d-903d4fe5ef5e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A05_666878.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11D-A044-08 b532f095-e71f-4ccd-8abe-4c8ff659aabd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11D-A045-09 99cdaaae-3751-44e1-9a59-2946b4058221 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11R-A034-07 6330ab59-db9d-4b22-a96b-1024c9b4908d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11R-A034-07 6330ab59-db9d-4b22-a96b-1024c9b4908d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011898_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11R-A034-07 6330ab59-db9d-4b22-a96b-1024c9b4908d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011898_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11R-A034-07 6330ab59-db9d-4b22-a96b-1024c9b4908d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011898_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11R-A034-07 6330ab59-db9d-4b22-a96b-1024c9b4908d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_696244.TCGA-A8-A0A2-01A-11R-A034-07.110302_UNC11-SN627_0067_BB04EPABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11R-A034-07 6330ab59-db9d-4b22-a96b-1024c9b4908d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_696250.TCGA-A8-A0A2-01A-11R-A034-07.110302_UNC11-SN627_0067_BB04EPABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11R-A034-07 6330ab59-db9d-4b22-a96b-1024c9b4908d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_696358.TCGA-A8-A0A2-01A-11R-A034-07.110302_UNC11-SN627_0067_BB04EPABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11R-A035-13 17dd2c2c-1fa8-4d7b-8de7-cd2d3d49afe1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11R-A035-13 17dd2c2c-1fa8-4d7b-8de7-cd2d3d49afe1 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A0A2-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11R-A035-13 17dd2c2c-1fa8-4d7b-8de7-cd2d3d49afe1 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A0A2-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11W-A050-09 b681dba3-a608-47c2-9ae8-5d761d1e800e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11W-A050-09 b681dba3-a608-47c2-9ae8-5d761d1e800e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11W-A051-08 3259a948-4a61-4834-bb6a-a7637f5b08fe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11X-A048-08 2e7baeb7-9f15-40f1-a1d1-a80fc9d27a35 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-01A TCGA-A8-A0A2-01A-11X-A049-09 fc31a23a-c8f0-45bf-973c-197eb54fdfb1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-10A TCGA-A8-A0A2-10A-01D-A031-02 462c31c1-aadf-42cc-b87c-e9851839c51c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-10A TCGA-A8-A0A2-10A-01D-A037-01 d553eb15-c8d7-48b2-9835-2bd842097b3e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-10A TCGA-A8-A0A2-10A-01D-A037-01 d553eb15-c8d7-48b2-9835-2bd842097b3e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A04_666910.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A8-A0A2 TCGA-A8-A0A2-10A TCGA-A8-A0A2-10A-01D-A037-01 d553eb15-c8d7-48b2-9835-2bd842097b3e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A04_666910.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-10A TCGA-A8-A0A2-10A-01D-A037-01 d553eb15-c8d7-48b2-9835-2bd842097b3e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A04_666910.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-10A TCGA-A8-A0A2-10A-01D-A037-01 d553eb15-c8d7-48b2-9835-2bd842097b3e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A04_666910.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-10A TCGA-A8-A0A2-10A-01D-A037-01 d553eb15-c8d7-48b2-9835-2bd842097b3e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A04_666910.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-10A TCGA-A8-A0A2-10A-01D-A037-01 d553eb15-c8d7-48b2-9835-2bd842097b3e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A04_666910.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-10A TCGA-A8-A0A2-10A-01D-A037-01 d553eb15-c8d7-48b2-9835-2bd842097b3e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A04_666910.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-10A TCGA-A8-A0A2-10A-01D-A037-01 d553eb15-c8d7-48b2-9835-2bd842097b3e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A04_666910.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-10A TCGA-A8-A0A2-10A-01D-A046-08 22f2929f-8239-4cff-901f-6d5a24efffea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-10A TCGA-A8-A0A2-10A-01D-A047-09 94d09609-eb02-4414-ab8a-22927f6fcaeb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-10A TCGA-A8-A0A2-10A-01W-A053-08 d345096a-9abb-4464-9e66-2f5fbb770e07 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-10A TCGA-A8-A0A2-10A-01W-A055-09 74e986b0-8284-4f30-8bbd-6132f40ed403 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-10A TCGA-A8-A0A2-10A-01W-A055-09 74e986b0-8284-4f30-8bbd-6132f40ed403 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-10A TCGA-A8-A0A2-10A-01X-A052-08 573d339c-d9d1-4dd2-acf6-29bf088fa720 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0A2 TCGA-A8-A0A2-10A TCGA-A8-A0A2-10A-01X-A054-09 6d3027e0-bf30-4424-a72a-cd916e3a2b1f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11D-A00Y-05 5d948305-592b-4a07-88b5-fe855e90770d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11D-A00Y-05 5d948305-592b-4a07-88b5-fe855e90770d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A0A4-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11D-A00Y-05 5d948305-592b-4a07-88b5-fe855e90770d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A0A4-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11D-A00Y-05 5d948305-592b-4a07-88b5-fe855e90770d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A0A4-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11D-A011-01 a4acb159-6b4b-431f-9ae3-1352299bc461 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11D-A011-01 a4acb159-6b4b-431f-9ae3-1352299bc461 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D08_628516.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11D-A011-01 a4acb159-6b4b-431f-9ae3-1352299bc461 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D08_628516.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11D-A011-01 a4acb159-6b4b-431f-9ae3-1352299bc461 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D08_628516.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11D-A011-01 a4acb159-6b4b-431f-9ae3-1352299bc461 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D08_628516.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11D-A011-01 a4acb159-6b4b-431f-9ae3-1352299bc461 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D08_628516.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11D-A011-01 a4acb159-6b4b-431f-9ae3-1352299bc461 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D08_628516.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11D-A011-01 a4acb159-6b4b-431f-9ae3-1352299bc461 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D08_628516.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11D-A011-01 a4acb159-6b4b-431f-9ae3-1352299bc461 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D08_628516.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11D-A015-09 d9bf15e7-387b-4667-809b-c0a4eb55f7b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11D-A016-08 9c541409-d166-4949-97ce-04b4a089db78 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11D-A068-02 886816c4-75f3-44db-ba11-c5115aa2deb3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11R-A00Z-07 d9d0e575-bca2-45e6-9df3-fb6fee59ccd9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11R-A00Z-07 d9d0e575-bca2-45e6-9df3-fb6fee59ccd9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011881_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11R-A00Z-07 d9d0e575-bca2-45e6-9df3-fb6fee59ccd9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011881_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11R-A00Z-07 d9d0e575-bca2-45e6-9df3-fb6fee59ccd9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011881_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11R-A00Z-07 d9d0e575-bca2-45e6-9df3-fb6fee59ccd9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_653952.TCGA-A8-A0A4-01A-11R-A00Z-07.110304_UNC12-SN629_0065_AB05PGABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11R-A00Z-07 d9d0e575-bca2-45e6-9df3-fb6fee59ccd9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_654102.TCGA-A8-A0A4-01A-11R-A00Z-07.110304_UNC12-SN629_0065_AB05PGABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11R-A00Z-07 d9d0e575-bca2-45e6-9df3-fb6fee59ccd9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_654239.TCGA-A8-A0A4-01A-11R-A00Z-07.110304_UNC12-SN629_0065_AB05PGABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11R-A010-13 a40db9a7-30cf-4825-b832-3ad24076b2da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11R-A010-13 a40db9a7-30cf-4825-b832-3ad24076b2da miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A0A4-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11R-A010-13 a40db9a7-30cf-4825-b832-3ad24076b2da miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A0A4-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11W-A019-09 1fc4d542-86ac-42bc-9fbb-272c23e6aa72 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11W-A019-09 1fc4d542-86ac-42bc-9fbb-272c23e6aa72 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11W-A020-08 da6039c0-02b0-431a-b0d2-865d9ab1241f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11X-A023-09 520d7fa7-d076-448d-b04e-227fbe08cc54 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-01A TCGA-A8-A0A4-01A-11X-A024-08 286c97f9-036e-4dfa-aa1e-35eb3947487d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-10A TCGA-A8-A0A4-10A-01D-A012-01 3058d8d0-22d5-4707-974d-a5f2ff7af261 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-10A TCGA-A8-A0A4-10A-01D-A012-01 3058d8d0-22d5-4707-974d-a5f2ff7af261 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A04_628540.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A0A4 TCGA-A8-A0A4-10A TCGA-A8-A0A4-10A-01D-A012-01 3058d8d0-22d5-4707-974d-a5f2ff7af261 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A04_628540.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-10A TCGA-A8-A0A4-10A-01D-A012-01 3058d8d0-22d5-4707-974d-a5f2ff7af261 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A04_628540.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-10A TCGA-A8-A0A4-10A-01D-A012-01 3058d8d0-22d5-4707-974d-a5f2ff7af261 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A04_628540.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-10A TCGA-A8-A0A4-10A-01D-A012-01 3058d8d0-22d5-4707-974d-a5f2ff7af261 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A04_628540.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-10A TCGA-A8-A0A4-10A-01D-A012-01 3058d8d0-22d5-4707-974d-a5f2ff7af261 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A04_628540.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-10A TCGA-A8-A0A4-10A-01D-A012-01 3058d8d0-22d5-4707-974d-a5f2ff7af261 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A04_628540.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-10A TCGA-A8-A0A4-10A-01D-A012-01 3058d8d0-22d5-4707-974d-a5f2ff7af261 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A04_628540.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-10A TCGA-A8-A0A4-10A-01D-A017-09 cab268ee-9273-43ac-8180-ae9feeecb985 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-10A TCGA-A8-A0A4-10A-01D-A018-08 cc289787-ff5d-46d5-a5e7-3ffaff6c49d3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-10A TCGA-A8-A0A4-10A-01D-A069-02 86a535f8-ab7d-444b-9baa-c6730a149d8d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-10A TCGA-A8-A0A4-10A-01W-A021-09 db493df5-6038-4dc3-8bc7-eab44d4d9dcb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-10A TCGA-A8-A0A4-10A-01W-A021-09 db493df5-6038-4dc3-8bc7-eab44d4d9dcb Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-10A TCGA-A8-A0A4-10A-01W-A022-08 07f6aa12-442a-4c47-93df-3fa013ef4c77 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-10A TCGA-A8-A0A4-10A-01X-A025-09 3fe8f1ab-1901-4dfd-a2ec-3f9fe3ead423 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A4 TCGA-A8-A0A4-10A TCGA-A8-A0A4-10A-01X-A026-08 eb8b2ef9-ef8e-4102-b49e-6d15175e215d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12D-A058-05 5d5ee32f-a168-420c-a306-504a3731aa8f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12D-A059-01 0f68f8f1-514a-41b6-bf5a-87792ef5a50f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12D-A059-01 0f68f8f1-514a-41b6-bf5a-87792ef5a50f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B05_697036.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12D-A059-01 0f68f8f1-514a-41b6-bf5a-87792ef5a50f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B05_697036.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12D-A059-01 0f68f8f1-514a-41b6-bf5a-87792ef5a50f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B05_697036.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12D-A059-01 0f68f8f1-514a-41b6-bf5a-87792ef5a50f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B05_697036.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12D-A059-01 0f68f8f1-514a-41b6-bf5a-87792ef5a50f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B05_697036.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12D-A059-01 0f68f8f1-514a-41b6-bf5a-87792ef5a50f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B05_697036.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12D-A059-01 0f68f8f1-514a-41b6-bf5a-87792ef5a50f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B05_697036.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12D-A059-01 0f68f8f1-514a-41b6-bf5a-87792ef5a50f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B05_697036.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12D-A060-02 3d19933d-07f9-48d5-81d3-794e5ff1834e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12D-A074-08 84b360d0-f40c-48df-a522-e18b35fb0eb2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12D-A075-09 529061d4-da50-445f-a088-fa3f01d6931b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12D-A10P-05 0c812071-f63a-498f-861b-da646eeddbf2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12D-A10P-05 0c812071-f63a-498f-861b-da646eeddbf2 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486023_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12D-A10P-05 0c812071-f63a-498f-861b-da646eeddbf2 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486023_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12D-A10P-05 0c812071-f63a-498f-861b-da646eeddbf2 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-A8-A0A6-01A-12D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12D-A10P-05 0c812071-f63a-498f-861b-da646eeddbf2 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-A8-A0A6-01A-12D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12R-A056-07 6ba764ba-f6ae-4977-8b7f-4e9528009eb0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12R-A056-07 6ba764ba-f6ae-4977-8b7f-4e9528009eb0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012205_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12R-A056-07 6ba764ba-f6ae-4977-8b7f-4e9528009eb0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012205_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12R-A056-07 6ba764ba-f6ae-4977-8b7f-4e9528009eb0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012205_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12R-A056-07 6ba764ba-f6ae-4977-8b7f-4e9528009eb0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480238.TCGA-A8-A0A6-01A-12R-A056-07.110318_SN749_0046_AB039FABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12R-A056-07 6ba764ba-f6ae-4977-8b7f-4e9528009eb0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480248.TCGA-A8-A0A6-01A-12R-A056-07.110318_SN749_0046_AB039FABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12R-A056-07 6ba764ba-f6ae-4977-8b7f-4e9528009eb0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480299.TCGA-A8-A0A6-01A-12R-A056-07.110318_SN749_0046_AB039FABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12R-A057-13 63b35e38-ffea-463c-8320-5f6122dae011 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12R-A057-13 63b35e38-ffea-463c-8320-5f6122dae011 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A0A6-01A-12R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12R-A057-13 63b35e38-ffea-463c-8320-5f6122dae011 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A0A6-01A-12R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12W-A070-08 be1235be-f6c3-420b-8773-964a3e9c940b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12W-A071-09 799fe8eb-ef90-40d9-850b-aea8c529a4da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12X-A072-08 093aca83-7af4-413c-9e29-a1fe6dfe5c59 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-01A TCGA-A8-A0A6-01A-12X-A073-09 289445e4-1dd2-4faa-8e1e-712d4244e443 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-10A TCGA-A8-A0A6-10A-01D-A059-01 ff1fc3f5-8404-49e3-82d4-97b349fe3199 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-10A TCGA-A8-A0A6-10A-01D-A059-01 ff1fc3f5-8404-49e3-82d4-97b349fe3199 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C12_697122.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-A8-A0A6 TCGA-A8-A0A6-10A TCGA-A8-A0A6-10A-01D-A059-01 ff1fc3f5-8404-49e3-82d4-97b349fe3199 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C12_697122.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-10A TCGA-A8-A0A6-10A-01D-A059-01 ff1fc3f5-8404-49e3-82d4-97b349fe3199 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C12_697122.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-10A TCGA-A8-A0A6-10A-01D-A059-01 ff1fc3f5-8404-49e3-82d4-97b349fe3199 SNP Genome_Wide_SNP_6 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1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-10A TCGA-A8-A0A6-10A-01W-A071-09 53ce4246-678f-45a1-be5b-7f6863bbd049 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-10A TCGA-A8-A0A6-10A-01X-A072-08 dc95c752-2334-4fcc-9e69-e12da50178ce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0A6 TCGA-A8-A0A6-10A TCGA-A8-A0A6-10A-01X-A073-09 b3f88515-0aff-4950-b12c-a4c4fdf5a925 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11D-A00Y-05 c6d75158-bd48-44dc-9900-480d55c9e72b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11D-A00Y-05 c6d75158-bd48-44dc-9900-480d55c9e72b DNA Methylation HumanMethylation27 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A0A7-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11D-A011-01 ea568589-43f0-4539-acdf-c626aeb20446 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11D-A011-01 ea568589-43f0-4539-acdf-c626aeb20446 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D02_628476.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11D-A011-01 ea568589-43f0-4539-acdf-c626aeb20446 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D02_628476.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11D-A011-01 ea568589-43f0-4539-acdf-c626aeb20446 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D02_628476.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11D-A011-01 ea568589-43f0-4539-acdf-c626aeb20446 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D02_628476.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11D-A011-01 ea568589-43f0-4539-acdf-c626aeb20446 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D02_628476.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11D-A011-01 ea568589-43f0-4539-acdf-c626aeb20446 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D02_628476.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11D-A015-09 3371d06d-4fe8-4970-86c4-ce6c209bc0ce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11D-A016-08 332bafb8-1505-47a7-900f-05d8ec8ae4e7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11D-A068-02 5a4c47d4-ea19-4f88-a80c-dba9a9454820 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11R-A00Z-07 bae23acf-5981-4071-a7e1-6363ab128561 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11R-A00Z-07 bae23acf-5981-4071-a7e1-6363ab128561 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446511.TCGA-A8-A0A7-01A-11R-A00Z-07.110225_UNC12-SN629_0063_AB041JABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11R-A00Z-07 bae23acf-5981-4071-a7e1-6363ab128561 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446513.TCGA-A8-A0A7-01A-11R-A00Z-07.110225_UNC12-SN629_0063_AB041JABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11R-A00Z-07 bae23acf-5981-4071-a7e1-6363ab128561 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446519.TCGA-A8-A0A7-01A-11R-A00Z-07.110225_UNC12-SN629_0063_AB041JABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11R-A010-13 637729b8-88c1-4679-8b70-372390927ce0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11R-A010-13 637729b8-88c1-4679-8b70-372390927ce0 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A0A7-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11R-A010-13 637729b8-88c1-4679-8b70-372390927ce0 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A0A7-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11R-A040-07 649df2e7-fb70-424c-b20d-304f378818f1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11R-A040-07 649df2e7-fb70-424c-b20d-304f378818f1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012150_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11R-A040-07 649df2e7-fb70-424c-b20d-304f378818f1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012150_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11R-A040-07 649df2e7-fb70-424c-b20d-304f378818f1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012150_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11W-A019-09 28be7b14-730d-44f7-bf93-a7590b4a08f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11W-A019-09 28be7b14-730d-44f7-bf93-a7590b4a08f8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11W-A020-08 a7ad019e-9de3-4d22-a93a-d8567cd4301d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11X-A023-09 795c627f-9af2-4866-8dbc-325672179461 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-01A TCGA-A8-A0A7-01A-11X-A024-08 0dcb1f28-4545-448d-95bf-371663351378 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-10A TCGA-A8-A0A7-10A-01D-A012-01 80ef56ec-3ab2-4952-9228-a90b4475a378 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-10A TCGA-A8-A0A7-10A-01D-A012-01 80ef56ec-3ab2-4952-9228-a90b4475a378 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C11_628504.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A0A7 TCGA-A8-A0A7-10A TCGA-A8-A0A7-10A-01D-A012-01 80ef56ec-3ab2-4952-9228-a90b4475a378 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C11_628504.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-10A TCGA-A8-A0A7-10A-01D-A012-01 80ef56ec-3ab2-4952-9228-a90b4475a378 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C11_628504.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-10A TCGA-A8-A0A7-10A-01D-A012-01 80ef56ec-3ab2-4952-9228-a90b4475a378 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C11_628504.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-10A TCGA-A8-A0A7-10A-01D-A012-01 80ef56ec-3ab2-4952-9228-a90b4475a378 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C11_628504.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-10A TCGA-A8-A0A7-10A-01D-A012-01 80ef56ec-3ab2-4952-9228-a90b4475a378 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C11_628504.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-10A TCGA-A8-A0A7-10A-01D-A012-01 80ef56ec-3ab2-4952-9228-a90b4475a378 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C11_628504.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-10A TCGA-A8-A0A7-10A-01D-A012-01 80ef56ec-3ab2-4952-9228-a90b4475a378 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C11_628504.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-10A TCGA-A8-A0A7-10A-01D-A017-09 a37a4000-6af8-44d7-862e-3d3c33dd3244 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-10A TCGA-A8-A0A7-10A-01D-A018-08 5bad4ab0-68d4-4ec9-b9cb-c222a282f38d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-10A TCGA-A8-A0A7-10A-01D-A069-02 0c9e1748-32ee-4655-b078-db199b3e1a82 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-10A TCGA-A8-A0A7-10A-01W-A021-09 42c2f167-31c5-4e16-8957-a01fd498e05d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-10A TCGA-A8-A0A7-10A-01W-A021-09 42c2f167-31c5-4e16-8957-a01fd498e05d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-10A TCGA-A8-A0A7-10A-01W-A022-08 7b876529-41cb-4de1-b955-63763f3bc58a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-10A TCGA-A8-A0A7-10A-01X-A025-09 f0a9a783-5590-40a9-bff0-780b1dfea4fe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A7 TCGA-A8-A0A7-10A TCGA-A8-A0A7-10A-01X-A026-08 98a8cf9e-4731-4430-a36e-59ba4f31279d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11D-A00Y-05 5fe1f965-1392-4fe2-8729-21b1f6668226 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11D-A00Y-05 5fe1f965-1392-4fe2-8729-21b1f6668226 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-A8-A0A9-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11D-A00Y-05 5fe1f965-1392-4fe2-8729-21b1f6668226 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-A8-A0A9-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11D-A00Y-05 5fe1f965-1392-4fe2-8729-21b1f6668226 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-A8-A0A9-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11D-A011-01 e58bcf4e-94ae-47b3-9148-43a76567841d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11D-A011-01 e58bcf4e-94ae-47b3-9148-43a76567841d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D06_628458.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11D-A011-01 e58bcf4e-94ae-47b3-9148-43a76567841d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D06_628458.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11D-A011-01 e58bcf4e-94ae-47b3-9148-43a76567841d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D06_628458.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11D-A011-01 e58bcf4e-94ae-47b3-9148-43a76567841d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D06_628458.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11D-A011-01 e58bcf4e-94ae-47b3-9148-43a76567841d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D06_628458.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11D-A011-01 e58bcf4e-94ae-47b3-9148-43a76567841d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D06_628458.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11D-A011-01 e58bcf4e-94ae-47b3-9148-43a76567841d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D06_628458.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11D-A011-01 e58bcf4e-94ae-47b3-9148-43a76567841d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D06_628458.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11D-A015-09 2f1e8a73-7966-4e8f-829e-eeff432b3574 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11D-A016-08 4720cc2f-4a00-453c-97a2-22c577a9ddbc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11D-A068-02 beef834a-1b88-49d5-99fd-d672e5cb77a9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11R-A00Z-07 1766e42e-f8cf-447d-a694-3999a1fec43a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11R-A00Z-07 1766e42e-f8cf-447d-a694-3999a1fec43a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012013_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11R-A00Z-07 1766e42e-f8cf-447d-a694-3999a1fec43a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012013_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11R-A00Z-07 1766e42e-f8cf-447d-a694-3999a1fec43a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012013_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11R-A00Z-07 1766e42e-f8cf-447d-a694-3999a1fec43a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445494.TCGA-A8-A0A9-01A-11R-A00Z-07.110310_UNC12-SN629_0069_AB05L5ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11R-A00Z-07 1766e42e-f8cf-447d-a694-3999a1fec43a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445530.TCGA-A8-A0A9-01A-11R-A00Z-07.110310_UNC12-SN629_0069_AB05L5ABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11R-A00Z-07 1766e42e-f8cf-447d-a694-3999a1fec43a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445557.TCGA-A8-A0A9-01A-11R-A00Z-07.110310_UNC12-SN629_0069_AB05L5ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11R-A010-13 b921c0b1-bbce-49cf-b972-3a6cf80044c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11R-A010-13 b921c0b1-bbce-49cf-b972-3a6cf80044c8 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A0A9-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11R-A010-13 b921c0b1-bbce-49cf-b972-3a6cf80044c8 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A0A9-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11W-A019-09 228e66eb-1dc6-4c01-8252-c557a8f53916 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11W-A019-09 228e66eb-1dc6-4c01-8252-c557a8f53916 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11W-A020-08 8627cfc6-5f9f-42b3-a755-29f02a71939f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11X-A023-09 85c81c0c-e5c3-4f90-b486-e76a4b82490d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-01A TCGA-A8-A0A9-01A-11X-A024-08 52f04bee-7f86-400f-925d-b0e6911ea91b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-10A TCGA-A8-A0A9-10A-01D-A012-01 21687ac4-cd2a-4b20-83c4-543826209a37 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-10A TCGA-A8-A0A9-10A-01D-A012-01 21687ac4-cd2a-4b20-83c4-543826209a37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H08_628434.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-A8-A0A9 TCGA-A8-A0A9-10A TCGA-A8-A0A9-10A-01D-A012-01 21687ac4-cd2a-4b20-83c4-543826209a37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H08_628434.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-10A TCGA-A8-A0A9-10A-01D-A012-01 21687ac4-cd2a-4b20-83c4-543826209a37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H08_628434.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-10A TCGA-A8-A0A9-10A-01D-A012-01 21687ac4-cd2a-4b20-83c4-543826209a37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H08_628434.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-10A TCGA-A8-A0A9-10A-01D-A012-01 21687ac4-cd2a-4b20-83c4-543826209a37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H08_628434.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-10A TCGA-A8-A0A9-10A-01D-A012-01 21687ac4-cd2a-4b20-83c4-543826209a37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H08_628434.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-10A TCGA-A8-A0A9-10A-01D-A012-01 21687ac4-cd2a-4b20-83c4-543826209a37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H08_628434.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-10A TCGA-A8-A0A9-10A-01D-A012-01 21687ac4-cd2a-4b20-83c4-543826209a37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H08_628434.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-10A TCGA-A8-A0A9-10A-01D-A017-09 1d2e5d84-8e2b-47f2-8a6a-73d92a90c86f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-10A TCGA-A8-A0A9-10A-01D-A018-08 7b5fe75e-0650-4420-93ae-bd20e6d3afac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-10A TCGA-A8-A0A9-10A-01D-A069-02 eb44ee91-3ec7-4125-b8fc-4e06e33a2cf8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-10A TCGA-A8-A0A9-10A-01W-A021-09 80968de5-1de3-4be8-8697-1764f28db89f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-10A TCGA-A8-A0A9-10A-01W-A021-09 80968de5-1de3-4be8-8697-1764f28db89f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-10A TCGA-A8-A0A9-10A-01W-A022-08 e5b8d2bf-092d-40c3-bf20-745499bca969 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-10A TCGA-A8-A0A9-10A-01X-A025-09 37ab382b-55b5-4154-8801-2599b51e7b45 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0A9 TCGA-A8-A0A9-10A TCGA-A8-A0A9-10A-01X-A026-08 4604a2be-2311-4eb8-a544-b2ccdb7019d1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0A9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11D-A032-05 6aa600ef-164d-4e5b-9774-ea3e69e2ca96 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11D-A032-05 6aa600ef-164d-4e5b-9774-ea3e69e2ca96 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-A8-A0AB-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11D-A032-05 6aa600ef-164d-4e5b-9774-ea3e69e2ca96 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-A8-A0AB-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11D-A032-05 6aa600ef-164d-4e5b-9774-ea3e69e2ca96 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-A8-A0AB-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11D-A033-02 1a1e49be-f454-4bd6-b4ce-b1564fffc282 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11D-A036-01 bffa483f-5c3a-4945-be72-4b868b1c10fb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11D-A036-01 bffa483f-5c3a-4945-be72-4b868b1c10fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A06_666942.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11D-A036-01 bffa483f-5c3a-4945-be72-4b868b1c10fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A06_666942.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11D-A036-01 bffa483f-5c3a-4945-be72-4b868b1c10fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A06_666942.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11D-A036-01 bffa483f-5c3a-4945-be72-4b868b1c10fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A06_666942.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11D-A036-01 bffa483f-5c3a-4945-be72-4b868b1c10fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A06_666942.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11D-A036-01 bffa483f-5c3a-4945-be72-4b868b1c10fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A06_666942.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11D-A036-01 bffa483f-5c3a-4945-be72-4b868b1c10fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A06_666942.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11D-A036-01 bffa483f-5c3a-4945-be72-4b868b1c10fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A06_666942.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11D-A044-08 1aa5cb8d-7119-4c20-9a2a-bb3a253fd235 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11D-A045-09 5f6a4ea0-0c9a-44b0-81e8-5e8bba203a10 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11R-A034-07 83fe3d7b-6905-49ea-bbc8-ea9c468004f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11R-A034-07 83fe3d7b-6905-49ea-bbc8-ea9c468004f6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011899_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11R-A034-07 83fe3d7b-6905-49ea-bbc8-ea9c468004f6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011899_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11R-A034-07 83fe3d7b-6905-49ea-bbc8-ea9c468004f6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011899_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11R-A034-07 83fe3d7b-6905-49ea-bbc8-ea9c468004f6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_655996.TCGA-A8-A0AB-01A-11R-A034-07.110302_UNC11-SN627_0067_BB04EPABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11R-A034-07 83fe3d7b-6905-49ea-bbc8-ea9c468004f6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_656525.TCGA-A8-A0AB-01A-11R-A034-07.110302_UNC11-SN627_0067_BB04EPABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11R-A034-07 83fe3d7b-6905-49ea-bbc8-ea9c468004f6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_656902.TCGA-A8-A0AB-01A-11R-A034-07.110302_UNC11-SN627_0067_BB04EPABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11R-A035-13 917ca992-2ad4-47bb-8f0d-0ae65132bfca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11R-A035-13 917ca992-2ad4-47bb-8f0d-0ae65132bfca miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A0AB-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11R-A035-13 917ca992-2ad4-47bb-8f0d-0ae65132bfca miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A0AB-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11W-A050-09 ad2a2f5d-dad6-4c03-b235-20810d6d34dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11W-A050-09 ad2a2f5d-dad6-4c03-b235-20810d6d34dc Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11W-A051-08 f5dc35e0-87ee-4a92-9004-82f85a5647e5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11X-A048-08 68163089-8b20-4ddd-a40e-50675b54676e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-01A TCGA-A8-A0AB-01A-11X-A049-09 1f39288b-f904-4f3e-a6d3-29dbf191559c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-10A TCGA-A8-A0AB-10A-01D-A031-02 9182df11-231e-4c4c-a0d1-8aba79e0f398 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-10A TCGA-A8-A0AB-10A-01D-A037-01 2b871bde-acbd-47df-a210-4878d3a78247 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-10A TCGA-A8-A0AB-10A-01D-A037-01 2b871bde-acbd-47df-a210-4878d3a78247 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C04_667032.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-A8-A0AB TCGA-A8-A0AB-10A TCGA-A8-A0AB-10A-01D-A037-01 2b871bde-acbd-47df-a210-4878d3a78247 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C04_667032.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-10A TCGA-A8-A0AB-10A-01D-A037-01 2b871bde-acbd-47df-a210-4878d3a78247 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C04_667032.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-10A TCGA-A8-A0AB-10A-01D-A037-01 2b871bde-acbd-47df-a210-4878d3a78247 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C04_667032.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-10A TCGA-A8-A0AB-10A-01D-A037-01 2b871bde-acbd-47df-a210-4878d3a78247 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C04_667032.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-10A TCGA-A8-A0AB-10A-01D-A037-01 2b871bde-acbd-47df-a210-4878d3a78247 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C04_667032.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-10A TCGA-A8-A0AB-10A-01D-A037-01 2b871bde-acbd-47df-a210-4878d3a78247 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C04_667032.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-10A TCGA-A8-A0AB-10A-01D-A037-01 2b871bde-acbd-47df-a210-4878d3a78247 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C04_667032.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-10A TCGA-A8-A0AB-10A-01D-A046-08 b8cbe8f1-12c1-445b-ab7e-eedff3059bcc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-10A TCGA-A8-A0AB-10A-01D-A047-09 3044cbaa-2e1a-4fc4-aeb9-37280a50a59f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-10A TCGA-A8-A0AB-10A-01W-A053-08 e3b13ca6-9f98-4264-8ce3-5e140c47ad0b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-10A TCGA-A8-A0AB-10A-01W-A055-09 5e1600e7-1950-44a9-a2d2-d32a8649d2ea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-10A TCGA-A8-A0AB-10A-01W-A055-09 5e1600e7-1950-44a9-a2d2-d32a8649d2ea Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-10A TCGA-A8-A0AB-10A-01X-A052-08 92f55939-5a7c-48c7-a03a-1fe20e578948 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0AB TCGA-A8-A0AB-10A TCGA-A8-A0AB-10A-01X-A054-09 79ae642e-b4b5-4f84-99c9-7e343cd21201 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11D-A058-05 e5153285-ceac-420c-aa2d-63334660292d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11D-A059-01 f9e62dfe-3037-4306-be92-dfbeae90283e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11D-A059-01 f9e62dfe-3037-4306-be92-dfbeae90283e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H02_697030.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11D-A059-01 f9e62dfe-3037-4306-be92-dfbeae90283e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H02_697030.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11D-A059-01 f9e62dfe-3037-4306-be92-dfbeae90283e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H02_697030.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11D-A059-01 f9e62dfe-3037-4306-be92-dfbeae90283e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H02_697030.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11D-A059-01 f9e62dfe-3037-4306-be92-dfbeae90283e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H02_697030.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11D-A059-01 f9e62dfe-3037-4306-be92-dfbeae90283e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H02_697030.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11D-A059-01 f9e62dfe-3037-4306-be92-dfbeae90283e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H02_697030.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11D-A059-01 f9e62dfe-3037-4306-be92-dfbeae90283e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H02_697030.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11D-A060-02 cc9e1456-3b16-4ce9-b873-95b245cab59d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11D-A074-08 fba7d5fc-eebd-4434-931b-ef75a88bd6fe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11D-A075-09 128764b0-e450-4185-8c23-2633fc01e330 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11D-A10P-05 8562bfbf-b379-47e8-acc7-09ee823db957 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11D-A10P-05 8562bfbf-b379-47e8-acc7-09ee823db957 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486014_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11D-A10P-05 8562bfbf-b379-47e8-acc7-09ee823db957 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486014_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11D-A10P-05 8562bfbf-b379-47e8-acc7-09ee823db957 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-A8-A0AD-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11D-A10P-05 8562bfbf-b379-47e8-acc7-09ee823db957 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-A8-A0AD-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11R-A056-07 b62f3825-9634-4252-b841-4c455a007353 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11R-A056-07 b62f3825-9634-4252-b841-4c455a007353 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012478_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11R-A056-07 b62f3825-9634-4252-b841-4c455a007353 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012478_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11R-A056-07 b62f3825-9634-4252-b841-4c455a007353 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012478_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11R-A056-07 b62f3825-9634-4252-b841-4c455a007353 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480235.TCGA-A8-A0AD-01A-11R-A056-07.110318_SN749_0046_AB039FABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11R-A056-07 b62f3825-9634-4252-b841-4c455a007353 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480240.TCGA-A8-A0AD-01A-11R-A056-07.110318_SN749_0046_AB039FABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11R-A056-07 b62f3825-9634-4252-b841-4c455a007353 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480300.TCGA-A8-A0AD-01A-11R-A056-07.110318_SN749_0046_AB039FABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11R-A057-13 143b6d4a-1240-4552-8b0b-3d48e47b3410 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11R-A057-13 143b6d4a-1240-4552-8b0b-3d48e47b3410 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A0AD-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11R-A057-13 143b6d4a-1240-4552-8b0b-3d48e47b3410 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-A8-A0AD-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11W-A070-08 6a01e142-87f5-4854-a92a-22cea52e36da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11W-A071-09 6e6511fa-4f6e-4184-84b8-9e9e7a863632 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11W-A071-09 6e6511fa-4f6e-4184-84b8-9e9e7a863632 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11X-A072-08 27b1b865-4846-478c-acc5-68803a1bd5eb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-01A TCGA-A8-A0AD-01A-11X-A073-09 5067d624-d568-452e-bcbc-d9c337a8ee6d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-10A TCGA-A8-A0AD-10A-01D-A059-01 243e4e24-546c-4d5a-b365-92868774e4bb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-10A TCGA-A8-A0AD-10A-01D-A059-01 243e4e24-546c-4d5a-b365-92868774e4bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D06_697024.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-A8-A0AD TCGA-A8-A0AD-10A TCGA-A8-A0AD-10A-01D-A059-01 243e4e24-546c-4d5a-b365-92868774e4bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D06_697024.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-10A TCGA-A8-A0AD-10A-01D-A059-01 243e4e24-546c-4d5a-b365-92868774e4bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D06_697024.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-10A TCGA-A8-A0AD-10A-01D-A059-01 243e4e24-546c-4d5a-b365-92868774e4bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D06_697024.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-10A TCGA-A8-A0AD-10A-01D-A059-01 243e4e24-546c-4d5a-b365-92868774e4bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D06_697024.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-10A TCGA-A8-A0AD-10A-01D-A059-01 243e4e24-546c-4d5a-b365-92868774e4bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D06_697024.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-10A TCGA-A8-A0AD-10A-01D-A059-01 243e4e24-546c-4d5a-b365-92868774e4bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D06_697024.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-10A TCGA-A8-A0AD-10A-01D-A059-01 243e4e24-546c-4d5a-b365-92868774e4bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D06_697024.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-10A TCGA-A8-A0AD-10A-01D-A060-02 4b69c8d5-bccc-4f06-b35a-8b9f64479416 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-10A TCGA-A8-A0AD-10A-01D-A074-08 3a18b08d-2bc9-4006-b761-0aeb5be94a48 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-10A TCGA-A8-A0AD-10A-01D-A075-09 eca4662e-c16d-42a3-873d-93dc25491003 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-10A TCGA-A8-A0AD-10A-01W-A070-08 28b23056-c2b4-4e78-afe7-daea214a8c3c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-10A TCGA-A8-A0AD-10A-01W-A071-09 6efc67f6-3999-44ca-859b-c1fb69c7c699 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-10A TCGA-A8-A0AD-10A-01W-A071-09 6efc67f6-3999-44ca-859b-c1fb69c7c699 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-10A TCGA-A8-A0AD-10A-01X-A072-08 f3f9aaea-2409-4976-a6b4-3e17aa7c888d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-A8-A0AD TCGA-A8-A0AD-10A TCGA-A8-A0AD-10A-01X-A073-09 19ce2d9c-67d0-43f3-b3f3-12674847983c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-A8-A0AD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AC-A23C TCGA-AC-A23C-01A TCGA-AC-A23C-01A-12D-A165-02 e9cb4024-c34e-459e-bcfc-02e66eff720b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AC-A23C TCGA-AC-A23C-01A TCGA-AC-A23C-01A-12D-A166-01 2036be70-c64b-4ef4-82c6-822c5afae946 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AC-A23C TCGA-AC-A23C-01A TCGA-AC-A23C-01A-12D-A166-01 2036be70-c64b-4ef4-82c6-822c5afae946 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C03_802322.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-AC-A23C TCGA-AC-A23C-01A TCGA-AC-A23C-01A-12D-A166-01 2036be70-c64b-4ef4-82c6-822c5afae946 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C03_802322.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AC-A23C TCGA-AC-A23C-01A TCGA-AC-A23C-01A-12D-A166-01 2036be70-c64b-4ef4-82c6-822c5afae946 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C03_802322.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AC-A23C TCGA-AC-A23C-01A TCGA-AC-A23C-01A-12D-A166-01 2036be70-c64b-4ef4-82c6-822c5afae946 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C03_802322.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AC-A23C TCGA-AC-A23C-01A TCGA-AC-A23C-01A-12D-A166-01 2036be70-c64b-4ef4-82c6-822c5afae946 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C03_802322.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AC-A23C TCGA-AC-A23C-01A TCGA-AC-A23C-01A-12D-A166-01 2036be70-c64b-4ef4-82c6-822c5afae946 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C03_802322.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AC-A23C TCGA-AC-A23C-01A TCGA-AC-A23C-01A-12D-A166-01 2036be70-c64b-4ef4-82c6-822c5afae946 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C03_802322.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AC-A23C TCGA-AC-A23C-01A TCGA-AC-A23C-01A-12D-A166-01 2036be70-c64b-4ef4-82c6-822c5afae946 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C03_802322.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-AC-A23C TCGA-AC-A23C-01A TCGA-AC-A23C-01A-12D-A167-09 91766158-e175-4270-bc01-8e853fc9f391 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AC-A23C TCGA-AC-A23C-01A TCGA-AC-A23C-01A-12D-A16A-05 1e85acca-aa7b-43df-8ade-115ff0fac86e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AC-A23C TCGA-AC-A23C-01A TCGA-AC-A23C-01A-12D-A16A-05 1e85acca-aa7b-43df-8ade-115ff0fac86e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833142_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-AC-A23C TCGA-AC-A23C-01A TCGA-AC-A23C-01A-12D-A16A-05 1e85acca-aa7b-43df-8ade-115ff0fac86e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833142_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-AC-A23C TCGA-AC-A23C-01A TCGA-AC-A23C-01A-12D-A16A-05 1e85acca-aa7b-43df-8ade-115ff0fac86e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-2.TCGA-AC-A23C-01A-12D-A16A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0 142 07-NOV-11 04.58.21.556000000 PM TCGA-AC-A23C TCGA-AC-A23C-01A TCGA-AC-A23C-01A-12D-A16A-05 1e85acca-aa7b-43df-8ade-115ff0fac86e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-3.TCGA-AC-A23C-01A-12D-A16A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0 142 07-NOV-11 06.37.11.245000000 PM TCGA-AC-A23C TCGA-AC-A23C-01A TCGA-AC-A23C-01A-12R-A168-13 fb06e276-6996-46ea-bfdc-0bb6725c5cd6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AC-A23C TCGA-AC-A23C-01A TCGA-AC-A23C-01A-12R-A168-13 fb06e276-6996-46ea-bfdc-0bb6725c5cd6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AC-A23C-01A-12R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-AC-A23C TCGA-AC-A23C-01A TCGA-AC-A23C-01A-12R-A168-13 fb06e276-6996-46ea-bfdc-0bb6725c5cd6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AC-A23C-01A-12R-A168-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-AC-A23C TCGA-AC-A23C-01A TCGA-AC-A23C-01A-12R-A169-07 052b565f-1955-4c4e-8b1f-dd48743ba944 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AC-A23C TCGA-AC-A23C-01A TCGA-AC-A23C-01A-12R-A169-07 052b565f-1955-4c4e-8b1f-dd48743ba944 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_591266.TCGA-AC-A23C-01A-12R-A169-07.110919_UNC12-SN629_0142_BB00V1ABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-AC-A23C TCGA-AC-A23C-01A TCGA-AC-A23C-01A-12R-A169-07 052b565f-1955-4c4e-8b1f-dd48743ba944 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_591295.TCGA-AC-A23C-01A-12R-A169-07.110919_UNC12-SN629_0142_BB00V1ABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-AC-A23C TCGA-AC-A23C-01A TCGA-AC-A23C-01A-12R-A169-07 052b565f-1955-4c4e-8b1f-dd48743ba944 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_591332.TCGA-AC-A23C-01A-12R-A169-07.110919_UNC12-SN629_0142_BB00V1ABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-AC-A23C TCGA-AC-A23C-01A TCGA-AC-A23C-01A-12W-A184-09 4c86c598-e2f8-422e-9fe0-a8a8a60a2227 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AC-A23C TCGA-AC-A23C-10A TCGA-AC-A23C-10A-01D-A165-02 efc20095-d5b2-42d5-a7d1-d2f5c586f5bd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AC-A23C TCGA-AC-A23C-10A TCGA-AC-A23C-10A-01D-A166-01 bbfe9a5c-3c18-4fd7-9997-1ac9544b2e28 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AC-A23C TCGA-AC-A23C-10A TCGA-AC-A23C-10A-01D-A166-01 bbfe9a5c-3c18-4fd7-9997-1ac9544b2e28 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E05_802360.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-AC-A23C TCGA-AC-A23C-10A TCGA-AC-A23C-10A-01D-A166-01 bbfe9a5c-3c18-4fd7-9997-1ac9544b2e28 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E05_802360.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AC-A23C TCGA-AC-A23C-10A TCGA-AC-A23C-10A-01D-A166-01 bbfe9a5c-3c18-4fd7-9997-1ac9544b2e28 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E05_802360.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AC-A23C TCGA-AC-A23C-10A TCGA-AC-A23C-10A-01D-A166-01 bbfe9a5c-3c18-4fd7-9997-1ac9544b2e28 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E05_802360.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AC-A23C TCGA-AC-A23C-10A TCGA-AC-A23C-10A-01D-A166-01 bbfe9a5c-3c18-4fd7-9997-1ac9544b2e28 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E05_802360.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AC-A23C TCGA-AC-A23C-10A TCGA-AC-A23C-10A-01D-A166-01 bbfe9a5c-3c18-4fd7-9997-1ac9544b2e28 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E05_802360.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AC-A23C TCGA-AC-A23C-10A TCGA-AC-A23C-10A-01D-A166-01 bbfe9a5c-3c18-4fd7-9997-1ac9544b2e28 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E05_802360.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AC-A23C TCGA-AC-A23C-10A TCGA-AC-A23C-10A-01D-A166-01 bbfe9a5c-3c18-4fd7-9997-1ac9544b2e28 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E05_802360.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-AC-A23C TCGA-AC-A23C-10A TCGA-AC-A23C-10A-01D-A167-09 8d3b655a-a7d1-4a2d-90e6-a8b6aef059e2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AC-A23C TCGA-AC-A23C-10A TCGA-AC-A23C-10A-01W-A184-09 6471fd65-3f4e-4375-9f3b-df893668fa75 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AC-A23E TCGA-AC-A23E-01A TCGA-AC-A23E-01A-11D-A158-02 38b7a442-648b-44cb-bcf2-62386c091e40 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-AC-A23E TCGA-AC-A23E-01A TCGA-AC-A23E-01A-11D-A159-09 137cb73f-394a-459a-83e6-0b3c85c955cd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-AC-A23E TCGA-AC-A23E-01A TCGA-AC-A23E-01A-11D-A160-01 f875e50e-fc0f-4421-8ffb-4fec24d3340c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-AC-A23E TCGA-AC-A23E-01A TCGA-AC-A23E-01A-11D-A160-01 f875e50e-fc0f-4421-8ffb-4fec24d3340c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F07_787550.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-AC-A23E TCGA-AC-A23E-01A TCGA-AC-A23E-01A-11D-A160-01 f875e50e-fc0f-4421-8ffb-4fec24d3340c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F07_787550.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-AC-A23E TCGA-AC-A23E-01A TCGA-AC-A23E-01A-11D-A160-01 f875e50e-fc0f-4421-8ffb-4fec24d3340c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F07_787550.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-AC-A23E TCGA-AC-A23E-01A TCGA-AC-A23E-01A-11D-A160-01 f875e50e-fc0f-4421-8ffb-4fec24d3340c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F07_787550.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-AC-A23E TCGA-AC-A23E-01A TCGA-AC-A23E-01A-11D-A160-01 f875e50e-fc0f-4421-8ffb-4fec24d3340c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F07_787550.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-AC-A23E TCGA-AC-A23E-01A TCGA-AC-A23E-01A-11D-A160-01 f875e50e-fc0f-4421-8ffb-4fec24d3340c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F07_787550.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-AC-A23E TCGA-AC-A23E-01A TCGA-AC-A23E-01A-11D-A160-01 f875e50e-fc0f-4421-8ffb-4fec24d3340c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F07_787550.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-AC-A23E TCGA-AC-A23E-01A TCGA-AC-A23E-01A-11D-A160-01 f875e50e-fc0f-4421-8ffb-4fec24d3340c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F07_787550.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0 136 07-DEC-11 01.00.02.682000000 PM TCGA-AC-A23E TCGA-AC-A23E-01A TCGA-AC-A23E-01A-11D-A161-05 7022ddbf-c75e-4a58-a0b4-9be18cfdfbbc Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0/6042324005_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0 136 07-NOV-11 04.13.40.962000000 PM TCGA-AC-A23E TCGA-AC-A23E-01A TCGA-AC-A23E-01A-11D-A161-05 7022ddbf-c75e-4a58-a0b4-9be18cfdfbbc DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-2.TCGA-AC-A23E-01A-11D-A161-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0 136 07-NOV-11 04.57.19.359000000 PM TCGA-AC-A23E TCGA-AC-A23E-01A TCGA-AC-A23E-01A-11D-A161-05 7022ddbf-c75e-4a58-a0b4-9be18cfdfbbc DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-AC-A23E TCGA-AC-A23E-01A TCGA-AC-A23E-01A-11R-A156-13 ea6993ac-e4b9-460d-9364-3adf5b15f42e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AC-A23E-01A-11R-A156-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-AC-A23E TCGA-AC-A23E-01A TCGA-AC-A23E-01A-11R-A156-13 ea6993ac-e4b9-460d-9364-3adf5b15f42e miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_510343.TCGA-AC-A23E-01A-11R-A157-07.110901_UNC12-SN629_0127_BC025UABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-AC-A23E TCGA-AC-A23E-01A TCGA-AC-A23E-01A-11W-A16L-09 75e7fb9c-9583-4d50-b2da-30d6cb3c9534 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-AC-A23E TCGA-AC-A23E-10A TCGA-AC-A23E-10A-01D-A158-02 62fb3152-fadf-4e23-b43d-7611f7f68ff2 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-AC-A23E TCGA-AC-A23E-10A TCGA-AC-A23E-10A-01D-A160-01 b42b116a-d9c7-4ba3-a1b7-772798829d9b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D06_787586.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-AC-A23E TCGA-AC-A23E-10A TCGA-AC-A23E-10A-01D-A160-01 b42b116a-d9c7-4ba3-a1b7-772798829d9b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D06_787586.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-AC-A23E TCGA-AC-A23E-10A TCGA-AC-A23E-10A-01D-A160-01 b42b116a-d9c7-4ba3-a1b7-772798829d9b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D06_787586.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-AC-A23E TCGA-AC-A23E-10A TCGA-AC-A23E-10A-01D-A160-01 b42b116a-d9c7-4ba3-a1b7-772798829d9b SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-AC-A23G TCGA-AC-A23G-11A TCGA-AC-A23G-11A-12D-A20S-09 dd7c759d-25e5-413f-8504-9350c5aaffa2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-AC-A23H TCGA-AC-A23H-01A TCGA-AC-A23H-01A-11D-A158-02 72e831a1-5320-4aaa-bde3-543ee2ca44f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-AC-A23H TCGA-AC-A23H-01A TCGA-AC-A23H-01A-11D-A159-09 cee435b5-c424-4f9d-a834-ec90c1807913 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-AC-A23H TCGA-AC-A23H-01A TCGA-AC-A23H-01A-11D-A160-01 f8597ba1-42d8-4506-a306-3e443b82018d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-AC-A23H TCGA-AC-A23H-01A TCGA-AC-A23H-01A-11D-A160-01 f8597ba1-42d8-4506-a306-3e443b82018d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F03_787580.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-AC-A23H TCGA-AC-A23H-01A TCGA-AC-A23H-01A-11D-A160-01 f8597ba1-42d8-4506-a306-3e443b82018d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F03_787580.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-AC-A23H TCGA-AC-A23H-01A TCGA-AC-A23H-01A-11D-A160-01 f8597ba1-42d8-4506-a306-3e443b82018d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F03_787580.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-AC-A23H TCGA-AC-A23H-01A TCGA-AC-A23H-01A-11D-A160-01 f8597ba1-42d8-4506-a306-3e443b82018d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F03_787580.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-AC-A23H TCGA-AC-A23H-01A TCGA-AC-A23H-01A-11D-A160-01 f8597ba1-42d8-4506-a306-3e443b82018d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F03_787580.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-AC-A23H TCGA-AC-A23H-01A TCGA-AC-A23H-01A-11D-A160-01 f8597ba1-42d8-4506-a306-3e443b82018d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F03_787580.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-AC-A23H TCGA-AC-A23H-01A TCGA-AC-A23H-01A-11D-A160-01 f8597ba1-42d8-4506-a306-3e443b82018d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F03_787580.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-AC-A23H TCGA-AC-A23H-01A TCGA-AC-A23H-01A-11D-A160-01 f8597ba1-42d8-4506-a306-3e443b82018d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F03_787580.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0 136 07-DEC-11 01.00.02.682000000 PM TCGA-AC-A23H TCGA-AC-A23H-01A TCGA-AC-A23H-01A-11D-A161-05 4f9a3198-32fe-4ae7-b03b-4bb40f8a728d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-AC-A23H TCGA-AC-A23H-01A TCGA-AC-A23H-01A-11D-A161-05 4f9a3198-32fe-4ae7-b03b-4bb40f8a728d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0/6042316157_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0 136 07-NOV-11 04.13.40.962000000 PM TCGA-AC-A23H TCGA-AC-A23H-01A TCGA-AC-A23H-01A-11D-A161-05 4f9a3198-32fe-4ae7-b03b-4bb40f8a728d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0/6042316157_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0 136 07-NOV-11 04.13.40.962000000 PM TCGA-AC-A23H TCGA-AC-A23H-01A TCGA-AC-A23H-01A-11D-A161-05 4f9a3198-32fe-4ae7-b03b-4bb40f8a728d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-2.TCGA-AC-A23H-01A-11D-A161-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0 136 07-NOV-11 04.57.19.359000000 PM TCGA-AC-A23H TCGA-AC-A23H-01A TCGA-AC-A23H-01A-11D-A161-05 4f9a3198-32fe-4ae7-b03b-4bb40f8a728d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-3.TCGA-AC-A23H-01A-11D-A161-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0 136 07-NOV-11 05.36.48.633000000 PM TCGA-AC-A23H TCGA-AC-A23H-01A TCGA-AC-A23H-01A-11R-A156-13 0c2220b4-f4c9-43bc-bd07-a6628d17692f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-AC-A23H TCGA-AC-A23H-01A TCGA-AC-A23H-01A-11R-A156-13 0c2220b4-f4c9-43bc-bd07-a6628d17692f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AC-A23H-01A-11R-A156-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-AC-A23H TCGA-AC-A23H-01A TCGA-AC-A23H-01A-11R-A156-13 0c2220b4-f4c9-43bc-bd07-a6628d17692f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AC-A23H-01A-11R-A156-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-AC-A23H TCGA-AC-A23H-01A TCGA-AC-A23H-01A-11R-A157-07 28199d71-9111-4763-a07f-66734769bb98 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-AC-A23H TCGA-AC-A23H-01A TCGA-AC-A23H-01A-11R-A157-07 28199d71-9111-4763-a07f-66734769bb98 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_568745.TCGA-AC-A23H-01A-11R-A157-07.110926_UNC12-SN629_0143_AD0DY7ABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-AC-A23H TCGA-AC-A23H-01A TCGA-AC-A23H-01A-11R-A157-07 28199d71-9111-4763-a07f-66734769bb98 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_568873.TCGA-AC-A23H-01A-11R-A157-07.110926_UNC12-SN629_0143_AD0DY7ABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-AC-A23H TCGA-AC-A23H-01A TCGA-AC-A23H-01A-11R-A157-07 28199d71-9111-4763-a07f-66734769bb98 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_569077.TCGA-AC-A23H-01A-11R-A157-07.110926_UNC12-SN629_0143_AD0DY7ABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-AC-A23H TCGA-AC-A23H-01A TCGA-AC-A23H-01A-11W-A16L-09 a99a0bad-5bcd-4d4b-9417-c2bbfc4740a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-AC-A23H TCGA-AC-A23H-11A TCGA-AC-A23H-11A-12D-A158-02 9ad1c24b-b8c3-4e48-9cf0-a24833285e40 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-AC-A23H TCGA-AC-A23H-11A TCGA-AC-A23H-11A-12D-A159-09 810e6ac3-8323-46ae-a9d7-39e1df623787 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-AC-A23H TCGA-AC-A23H-11A TCGA-AC-A23H-11A-12D-A160-01 a25bc977-c690-4287-83b4-7d38b7549481 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H01_787562.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H01_787562.ismpolish.data.txt'. TCGA-AC-A23H TCGA-AC-A23H-11A TCGA-AC-A23H-11A-12D-A160-01 a25bc977-c690-4287-83b4-7d38b7549481 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H01_787562.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H01_787562.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H01_787562.ismpolish.data.txt'. TCGA-AC-A23H TCGA-AC-A23H-11A TCGA-AC-A23H-11A-12D-A160-01 a25bc977-c690-4287-83b4-7d38b7549481 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H01_787562.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H01_787562.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H01_787562.ismpolish.data.txt'. TCGA-AC-A23H TCGA-AC-A23H-11A TCGA-AC-A23H-11A-12D-A161-05 fd24b8b1-7230-408d-8fe4-57a9b3f60a6b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-AC-A23H TCGA-AC-A23H-11A TCGA-AC-A23H-11A-12D-A161-05 fd24b8b1-7230-408d-8fe4-57a9b3f60a6b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0/6042316157_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0 136 07-NOV-11 04.13.40.962000000 PM TCGA-AC-A23H TCGA-AC-A23H-11A TCGA-AC-A23H-11A-12D-A161-05 fd24b8b1-7230-408d-8fe4-57a9b3f60a6b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0/6042316157_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0 136 07-NOV-11 04.13.40.962000000 PM TCGA-AC-A23H TCGA-AC-A23H-11A TCGA-AC-A23H-11A-12D-A161-05 fd24b8b1-7230-408d-8fe4-57a9b3f60a6b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-2.TCGA-AC-A23H-11A-12D-A161-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0 136 07-NOV-11 04.57.19.359000000 PM TCGA-AC-A23H TCGA-AC-A23H-11A TCGA-AC-A23H-11A-12D-A161-05 fd24b8b1-7230-408d-8fe4-57a9b3f60a6b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-3.TCGA-AC-A23H-11A-12D-A161-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0 136 07-NOV-11 05.36.48.633000000 PM TCGA-AC-A23H TCGA-AC-A23H-11A TCGA-AC-A23H-11A-12D-A17G-09 15408151-7d19-4d24-a9a1-bc9f913d5e36 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-AC-A23H TCGA-AC-A23H-11A TCGA-AC-A23H-11A-12R-A156-13 0f490f28-6450-4da3-9b32-bf510aeab410 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-AC-A23H TCGA-AC-A23H-11A TCGA-AC-A23H-11A-12R-A156-13 0f490f28-6450-4da3-9b32-bf510aeab410 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AC-A23H-11A-12R-A156-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-AC-A23H TCGA-AC-A23H-11A TCGA-AC-A23H-11A-12R-A156-13 0f490f28-6450-4da3-9b32-bf510aeab410 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_568874.TCGA-AC-A23H-11A-12R-A157-07.110926_UNC12-SN629_0143_AD0DY7ABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-AC-A23H TCGA-AC-A23H-11A TCGA-AC-A23H-11A-12W-A16L-09 3e2da7ab-75a1-44aa-ad44-3c15fcadfffe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-AC-A23H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-AC-A2B8 TCGA-AC-A2B8-01A TCGA-AC-A2B8-01A-11D-A17C-01 abfdddc2-b118-4b4e-a283-f8cbc56730b4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-AC-A2B8 TCGA-AC-A2B8-01A TCGA-AC-A2B8-01A-11D-A17C-01 abfdddc2-b118-4b4e-a283-f8cbc56730b4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_G12_808640.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.155.1008.0 155 07-DEC-11 11.22.18.805000000 AM TCGA-AC-A2B8 TCGA-AC-A2B8-01A TCGA-AC-A2B8-01A-11D-A17C-01 abfdddc2-b118-4b4e-a283-f8cbc56730b4 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-AC-A2B8 TCGA-AC-A2B8-01A TCGA-AC-A2B8-01A-11R-A17A-13 40ef6b7b-8a4b-4bdb-a5f3-3742522f60e6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AC-A2B8-01A-11R-A17A-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 155 31-OCT-11 10.17.59.939000000 PM TCGA-AC-A2B8 TCGA-AC-A2B8-01A TCGA-AC-A2B8-01A-11R-A17A-13 40ef6b7b-8a4b-4bdb-a5f3-3742522f60e6 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-AC-A2B8 TCGA-AC-A2B8-10A TCGA-AC-A2B8-10A-01D-A17C-01 3a415d13-5383-4b15-9da4-eef09edba771 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_F09_808632.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.155.1008.0 155 07-DEC-11 11.22.18.805000000 AM TCGA-AC-A2B8 TCGA-AC-A2B8-10A TCGA-AC-A2B8-10A-01D-A17C-01 3a415d13-5383-4b15-9da4-eef09edba771 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_F09_808632.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-AC-A2B8 TCGA-AC-A2B8-10A TCGA-AC-A2B8-10A-01D-A17C-01 3a415d13-5383-4b15-9da4-eef09edba771 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_F09_808632.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-AC-A2B8 TCGA-AC-A2B8-10A TCGA-AC-A2B8-10A-01D-A17C-01 3a415d13-5383-4b15-9da4-eef09edba771 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_F09_808632.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-AC-A2B8 TCGA-AC-A2B8-10A TCGA-AC-A2B8-10A-01D-A17C-01 3a415d13-5383-4b15-9da4-eef09edba771 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_F09_808632.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-AC-A2B8 TCGA-AC-A2B8-10A TCGA-AC-A2B8-10A-01D-A17C-01 3a415d13-5383-4b15-9da4-eef09edba771 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_F09_808632.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-AC-A2B8 TCGA-AC-A2B8-10A TCGA-AC-A2B8-10A-01D-A17C-01 3a415d13-5383-4b15-9da4-eef09edba771 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_F09_808632.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-AC-A2B8 TCGA-AC-A2B8-10A TCGA-AC-A2B8-10A-01D-A17C-01 3a415d13-5383-4b15-9da4-eef09edba771 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_F09_808632.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.155.1008.0 155 07-DEC-11 01.00.05.091000000 PM TCGA-AC-A2B8 TCGA-AC-A2B8-10A TCGA-AC-A2B8-10A-01D-A17D-09 ca7ebf6b-a461-462e-9dbd-323b5aeba931 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-AC-A2B8 TCGA-AC-A2B8-10A TCGA-AC-A2B8-10A-01D-A17E-02 dc8b52c6-cdd5-498b-8c7b-323a49c9fdea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-AC-A2B8 TCGA-AC-A2B8-10A TCGA-AC-A2B8-10A-01W-A186-09 da1e511b-3ee0-4abf-b0a2-c09484718160 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-AC-A2FB TCGA-AC-A2FB-01A TCGA-AC-A2FB-01A-11D-A17C-01 ebef629e-e465-4ef3-84db-81ff8522b7f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-AC-A2FB TCGA-AC-A2FB-01A TCGA-AC-A2FB-01A-11D-A17C-01 ebef629e-e465-4ef3-84db-81ff8522b7f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H12_808602.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.155.1008.0 155 07-DEC-11 11.22.18.805000000 AM TCGA-AC-A2FB TCGA-AC-A2FB-01A TCGA-AC-A2FB-01A-11D-A17C-01 ebef629e-e465-4ef3-84db-81ff8522b7f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H12_808602.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-AC-A2FB TCGA-AC-A2FB-01A TCGA-AC-A2FB-01A-11D-A17C-01 ebef629e-e465-4ef3-84db-81ff8522b7f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H12_808602.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-AC-A2FB TCGA-AC-A2FB-01A TCGA-AC-A2FB-01A-11D-A17C-01 ebef629e-e465-4ef3-84db-81ff8522b7f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H12_808602.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-AC-A2FB TCGA-AC-A2FB-01A TCGA-AC-A2FB-01A-11D-A17C-01 ebef629e-e465-4ef3-84db-81ff8522b7f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H12_808602.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-AC-A2FB TCGA-AC-A2FB-01A TCGA-AC-A2FB-01A-11D-A17C-01 ebef629e-e465-4ef3-84db-81ff8522b7f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H12_808602.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-AC-A2FB TCGA-AC-A2FB-01A TCGA-AC-A2FB-01A-11D-A17C-01 ebef629e-e465-4ef3-84db-81ff8522b7f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H12_808602.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-AC-A2FB TCGA-AC-A2FB-01A TCGA-AC-A2FB-01A-11D-A17C-01 ebef629e-e465-4ef3-84db-81ff8522b7f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H12_808602.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.155.1008.0 155 07-DEC-11 01.00.05.091000000 PM TCGA-AC-A2FB TCGA-AC-A2FB-01A TCGA-AC-A2FB-01A-11D-A17D-09 6e15e39d-f36b-44bf-ae27-2f52d88ef9dd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-AC-A2FB TCGA-AC-A2FB-01A TCGA-AC-A2FB-01A-11D-A17E-02 33216512-6640-4af6-9594-834a263ed04b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-AC-A2FB TCGA-AC-A2FB-01A TCGA-AC-A2FB-01A-11D-A17F-05 ca901df9-a6d5-48be-96e7-d05add83f37b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-AC-A2FB TCGA-AC-A2FB-01A TCGA-AC-A2FB-01A-11D-A17F-05 ca901df9-a6d5-48be-96e7-d05add83f37b DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.16.1.0/jhu-usc.edu_BRCA.HumanMethylation450.16.lvl-2.TCGA-AC-A2FB-01A-11D-A17F-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.16.1.0 155 07-NOV-11 05.12.17.553000000 PM TCGA-AC-A2FB TCGA-AC-A2FB-01A TCGA-AC-A2FB-01A-11D-A17F-05 ca901df9-a6d5-48be-96e7-d05add83f37b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.16.1.0/jhu-usc.edu_BRCA.HumanMethylation450.16.lvl-3.TCGA-AC-A2FB-01A-11D-A17F-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.16.1.0 155 07-NOV-11 05.40.09.858000000 PM TCGA-AC-A2FB TCGA-AC-A2FB-01A TCGA-AC-A2FB-01A-11R-A17A-13 f7b85dcf-3928-452a-84ab-e4778f8b4c96 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-AC-A2FE TCGA-AC-A2FE-01A TCGA-AC-A2FE-01A-11R-A19W-07 22e03b77-aa0f-4348-98c1-9b0914e8af8b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-AC-A2FE TCGA-AC-A2FE-01A TCGA-AC-A2FE-01A-11W-A216-09 f7a5393d-01ba-4bc3-957b-efff8ca2fb24 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-AC-A2FE TCGA-AC-A2FE-11B TCGA-AC-A2FE-11B-22D-A19X-01 6ebb2afe-a403-4440-968b-70375af7c823 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-AC-A2FE TCGA-AC-A2FE-11B TCGA-AC-A2FE-11B-22D-A19Y-09 a2826b46-da0f-4e0d-9f06-bfae025386a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-AC-A2FE TCGA-AC-A2FE-11B TCGA-AC-A2FE-11B-22W-A216-09 0730d83a-a33c-48d6-b240-458fcf0ef685 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-01A TCGA-AC-A2FF-01A-11D-A17C-01 aabd1bd8-a5fc-44fd-8a1c-300fbab3032f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-01A TCGA-AC-A2FF-01A-11D-A17C-01 aabd1bd8-a5fc-44fd-8a1c-300fbab3032f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H02_808638.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.155.1008.0 155 07-DEC-11 11.22.18.805000000 AM TCGA-AC-A2FF TCGA-AC-A2FF-01A TCGA-AC-A2FF-01A-11D-A17C-01 aabd1bd8-a5fc-44fd-8a1c-300fbab3032f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H02_808638.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-01A TCGA-AC-A2FF-01A-11D-A17C-01 aabd1bd8-a5fc-44fd-8a1c-300fbab3032f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H02_808638.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-01A TCGA-AC-A2FF-01A-11D-A17C-01 aabd1bd8-a5fc-44fd-8a1c-300fbab3032f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H02_808638.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-01A TCGA-AC-A2FF-01A-11D-A17C-01 aabd1bd8-a5fc-44fd-8a1c-300fbab3032f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H02_808638.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-01A TCGA-AC-A2FF-01A-11D-A17C-01 aabd1bd8-a5fc-44fd-8a1c-300fbab3032f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H02_808638.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-01A TCGA-AC-A2FF-01A-11D-A17C-01 aabd1bd8-a5fc-44fd-8a1c-300fbab3032f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H02_808638.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-01A TCGA-AC-A2FF-01A-11D-A17C-01 aabd1bd8-a5fc-44fd-8a1c-300fbab3032f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H02_808638.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.155.1008.0 155 07-DEC-11 01.00.05.091000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-01A TCGA-AC-A2FF-01A-11D-A17D-09 81c6c068-2e8f-4130-a49d-099bdcf5f9f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-01A TCGA-AC-A2FF-01A-11D-A17E-02 9426a4eb-6e2e-4738-89a2-da56f1247f79 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-01A TCGA-AC-A2FF-01A-11D-A17F-05 7a94bea0-534f-4ca2-9965-48e04402e656 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-01A TCGA-AC-A2FF-01A-11D-A17F-05 7a94bea0-534f-4ca2-9965-48e04402e656 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.16.1.0/6057833159_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.16.1.0 155 07-NOV-11 04.28.40.688000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-01A TCGA-AC-A2FF-01A-11D-A17F-05 7a94bea0-534f-4ca2-9965-48e04402e656 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.16.1.0/6057833159_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.16.1.0 155 07-NOV-11 04.28.40.688000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-01A TCGA-AC-A2FF-01A-11D-A17F-05 7a94bea0-534f-4ca2-9965-48e04402e656 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.16.1.0/jhu-usc.edu_BRCA.HumanMethylation450.16.lvl-2.TCGA-AC-A2FF-01A-11D-A17F-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.16.1.0 155 07-NOV-11 05.12.17.553000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-01A TCGA-AC-A2FF-01A-11D-A17F-05 7a94bea0-534f-4ca2-9965-48e04402e656 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.16.1.0/jhu-usc.edu_BRCA.HumanMethylation450.16.lvl-3.TCGA-AC-A2FF-01A-11D-A17F-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.16.1.0 155 07-NOV-11 05.40.09.858000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-01A TCGA-AC-A2FF-01A-11R-A17A-13 141d62d1-9d2a-4634-84db-df2b7396ae2b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-01A TCGA-AC-A2FF-01A-11R-A17A-13 141d62d1-9d2a-4634-84db-df2b7396ae2b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AC-A2FF-01A-11R-A17A-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 155 31-OCT-11 10.17.59.939000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-01A TCGA-AC-A2FF-01A-11R-A17A-13 141d62d1-9d2a-4634-84db-df2b7396ae2b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AC-A2FF-01A-11R-A17A-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 155 31-OCT-11 10.17.59.939000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-01A TCGA-AC-A2FF-01A-11R-A17B-07 f99cbdbb-ae9c-4dc2-9b69-eeaa7798c2b8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-01A TCGA-AC-A2FF-01A-11R-A17B-07 f99cbdbb-ae9c-4dc2-9b69-eeaa7798c2b8 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_559162.TCGA-AC-A2FF-01A-11R-A17B-07.111003_UNC13-SN749_0121_AB020YABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 155 09-FEB-12 06.18.17.220000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-01A TCGA-AC-A2FF-01A-11R-A17B-07 f99cbdbb-ae9c-4dc2-9b69-eeaa7798c2b8 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_559168.TCGA-AC-A2FF-01A-11R-A17B-07.111003_UNC13-SN749_0121_AB020YABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 155 09-FEB-12 06.18.17.220000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-01A TCGA-AC-A2FF-01A-11R-A17B-07 f99cbdbb-ae9c-4dc2-9b69-eeaa7798c2b8 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_559309.TCGA-AC-A2FF-01A-11R-A17B-07.111003_UNC13-SN749_0121_AB020YABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 155 09-FEB-12 06.18.17.220000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-01A TCGA-AC-A2FF-01A-11W-A186-09 1f91b5ef-5802-4dbf-a24a-421e645c7f11 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-11A TCGA-AC-A2FF-11A-13D-A17C-01 7f50e7bd-11e1-4dcd-b1bc-75ac13c44bbf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-11A TCGA-AC-A2FF-11A-13D-A17C-01 7f50e7bd-11e1-4dcd-b1bc-75ac13c44bbf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H09_808542.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.155.1008.0 155 07-DEC-11 11.22.18.805000000 AM TCGA-AC-A2FF TCGA-AC-A2FF-11A TCGA-AC-A2FF-11A-13D-A17C-01 7f50e7bd-11e1-4dcd-b1bc-75ac13c44bbf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H09_808542.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-11A TCGA-AC-A2FF-11A-13D-A17C-01 7f50e7bd-11e1-4dcd-b1bc-75ac13c44bbf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H09_808542.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-11A TCGA-AC-A2FF-11A-13D-A17C-01 7f50e7bd-11e1-4dcd-b1bc-75ac13c44bbf SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-11A TCGA-AC-A2FF-11A-13R-A17B-07 3610639e-d947-446f-8483-86be65c80ed3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-AC-A2FF TCGA-AC-A2FF-11A TCGA-AC-A2FF-11A-13R-A17B-07 3610639e-d947-446f-8483-86be65c80ed3 RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-AC-A2FG TCGA-AC-A2FG-01A TCGA-AC-A2FG-01A-11D-A17C-01 709f0022-50be-49df-839c-9e716e3e0869 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H10_808570.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.155.1008.0 155 07-DEC-11 11.22.18.805000000 AM TCGA-AC-A2FG TCGA-AC-A2FG-01A TCGA-AC-A2FG-01A-11D-A17C-01 709f0022-50be-49df-839c-9e716e3e0869 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.16.1.0/jhu-usc.edu_BRCA.HumanMethylation450.16.lvl-2.TCGA-AC-A2FG-01A-11D-A17F-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.16.1.0 155 07-NOV-11 05.12.17.553000000 PM TCGA-AC-A2FG TCGA-AC-A2FG-01A TCGA-AC-A2FG-01A-11D-A17F-05 d2c24658-6afa-4923-87ce-726a2b516ba6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.16.1.0/jhu-usc.edu_BRCA.HumanMethylation450.16.lvl-3.TCGA-AC-A2FG-01A-11D-A17F-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.16.1.0 155 07-NOV-11 05.40.09.858000000 PM TCGA-AC-A2FG TCGA-AC-A2FG-01A TCGA-AC-A2FG-01A-11R-A17A-13 4e1a1c33-066d-48c4-8d2c-e114c03b9f54 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-AC-A2FG TCGA-AC-A2FG-01A TCGA-AC-A2FG-01A-11R-A17A-13 4e1a1c33-066d-48c4-8d2c-e114c03b9f54 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AC-A2FG-01A-11R-A17A-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 155 31-OCT-11 10.17.59.939000000 PM TCGA-AC-A2FG TCGA-AC-A2FG-01A TCGA-AC-A2FG-01A-11R-A17A-13 4e1a1c33-066d-48c4-8d2c-e114c03b9f54 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_559281.TCGA-AC-A2FG-01A-11R-A17B-07.111003_UNC13-SN749_0121_AB020YABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 155 09-FEB-12 06.18.17.220000000 PM TCGA-AC-A2FG TCGA-AC-A2FG-01A TCGA-AC-A2FG-01A-11W-A186-09 b1b90279-a1f1-48f5-bf45-35ce0da40f0c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-AC-A2FG TCGA-AC-A2FG-11A TCGA-AC-A2FG-11A-22D-A17C-01 85e0d61b-08ae-4975-84e0-cf73693c15c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-AC-A2FG TCGA-AC-A2FG-11A TCGA-AC-A2FG-11A-22D-A17C-01 85e0d61b-08ae-4975-84e0-cf73693c15c9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_E03_808682.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.155.1008.0 155 07-DEC-11 11.22.18.805000000 AM TCGA-AC-A2FG TCGA-AC-A2FG-11A TCGA-AC-A2FG-11A-22D-A17C-01 85e0d61b-08ae-4975-84e0-cf73693c15c9 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-AC-A2FG TCGA-AC-A2FG-11A TCGA-AC-A2FG-11A-22D-A17F-05 24d35f5b-2c9c-40c6-b1d2-00df483e438e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-AC-A2FG TCGA-AC-A2FG-11A TCGA-AC-A2FG-11A-22D-A17F-05 24d35f5b-2c9c-40c6-b1d2-00df483e438e DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.167.8.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.167.8.0 167 12-JAN-12 08.42.08.986000000 PM TCGA-AC-A2FK TCGA-AC-A2FK-01A TCGA-AC-A2FK-01A-12D-A17Z-05 07751608-041b-40d8-b9fd-4ebf3145f00b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.167.8.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2FK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.167.8.0 167 12-JAN-12 08.42.08.986000000 PM TCGA-AC-A2FK TCGA-AC-A2FK-01A TCGA-AC-A2FK-01A-12R-A17X-13 ef3dc361-d8cb-48d9-8fb5-72cf9f806548 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2QJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-AC-A2QJ TCGA-AC-A2QJ-11A TCGA-AC-A2QJ-11A-12D-A19X-01 4581d1aa-649a-4938-ab2b-5d32a2fef9ad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2QJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-AC-A2QJ TCGA-AC-A2QJ-11A TCGA-AC-A2QJ-11A-12D-A19Y-09 d32c7909-42f1-4654-aa3e-0bff663b42de Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2QJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-AC-A2QJ TCGA-AC-A2QJ-11A TCGA-AC-A2QJ-11A-12W-A216-09 b69f29b8-f54c-4243-9103-d329da53ee13 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-AC-A2QJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-AC-A3BB TCGA-AC-A3BB-01A TCGA-AC-A3BB-01A-21D-A19X-01 325333bd-a1cc-43d2-bb16-420130c6ebf9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-AC-A3BB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-AC-A3BB TCGA-AC-A3BB-01A TCGA-AC-A3BB-01A-21D-A19Y-09 69990efb-cbdc-4364-b4c0-53a3a921b3ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-AC-A3BB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-AC-A3BB TCGA-AC-A3BB-01A TCGA-AC-A3BB-01A-21D-A19Z-05 fa6e7ae2-4ea8-4db7-8679-3ca109992302 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-AC-A3BB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-AC-A3BB TCGA-AC-A3BB-01A TCGA-AC-A3BB-01A-21R-A19V-13 44be928e-52df-442b-a0e2-10255c60a497 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-AC-A3BB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-AC-A3BB TCGA-AC-A3BB-01A TCGA-AC-A3BB-01A-21R-A19W-07 5b9b0b0c-c751-4b7d-9951-a8f6a13e1afa Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-AC-A3BB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-AC-A3BB TCGA-AC-A3BB-10A TCGA-AC-A3BB-10A-01D-A19Y-09 40c00f60-3ff1-4cb7-a1ed-657bab88f84d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-AC-A3BB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-AC-A3BB TCGA-AC-A3BB-10A TCGA-AC-A3BB-10A-01W-A216-09 c29caf9b-3a6d-4363-aeed-5bd5aa9070ff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-AC-A3BB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-AC-A3HN TCGA-AC-A3HN-01A TCGA-AC-A3HN-01A-11D-A20R-01 a7973daa-ca19-42a9-bf7c-a4dfc2359ba3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-AC-A3HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-AC-A3HN TCGA-AC-A3HN-01A TCGA-AC-A3HN-01A-11D-A20S-09 e68140c8-fe1c-4293-948f-851bf3317ce3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-AC-A3HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-AC-A3HN TCGA-AC-A3HN-01A TCGA-AC-A3HN-01A-11D-A212-05 9a5213cf-8635-40fa-867c-89967df00e73 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-AC-A3HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-AC-A3HN TCGA-AC-A3HN-01A TCGA-AC-A3HN-01A-11R-A213-07 79a14838-69d2-4c73-83a7-b57ff6ecdd79 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-AC-A3HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-AC-A3HN TCGA-AC-A3HN-01A TCGA-AC-A3HN-01A-11R-A214-13 3434cd30-e4d3-42a8-9e66-09bc67c18426 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-AC-A3HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-AC-A3HN TCGA-AC-A3HN-10A TCGA-AC-A3HN-10A-01D-A20R-01 d357b73c-f5c4-4869-afc6-1f90825fc6e6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-AC-A3HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-AC-A3HN TCGA-AC-A3HN-10A TCGA-AC-A3HN-10A-01D-A20S-09 5dc52294-fbb0-4f6a-a15e-5588e8a4751d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-AC-A3HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21D-A00Y-05 c7731cb2-2809-4563-bff1-cebe43a9882e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21D-A00Y-05 c7731cb2-2809-4563-bff1-cebe43a9882e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-AN-A03X-01A-21D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21D-A00Y-05 c7731cb2-2809-4563-bff1-cebe43a9882e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-AN-A03X-01A-21D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21D-A00Y-05 c7731cb2-2809-4563-bff1-cebe43a9882e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-AN-A03X-01A-21D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21D-A011-01 eb8bc681-2b7a-4100-a3cc-b8b90e1f017f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21D-A011-01 eb8bc681-2b7a-4100-a3cc-b8b90e1f017f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H01_628524.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21D-A011-01 eb8bc681-2b7a-4100-a3cc-b8b90e1f017f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H01_628524.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21D-A011-01 eb8bc681-2b7a-4100-a3cc-b8b90e1f017f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H01_628524.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21D-A011-01 eb8bc681-2b7a-4100-a3cc-b8b90e1f017f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H01_628524.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21D-A011-01 eb8bc681-2b7a-4100-a3cc-b8b90e1f017f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H01_628524.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21D-A011-01 eb8bc681-2b7a-4100-a3cc-b8b90e1f017f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H01_628524.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21D-A011-01 eb8bc681-2b7a-4100-a3cc-b8b90e1f017f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H01_628524.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21D-A011-01 eb8bc681-2b7a-4100-a3cc-b8b90e1f017f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H01_628524.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21D-A015-09 f146c763-9a3d-4e89-868d-1e6292e8390d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21D-A016-08 1a41ed5e-6062-4aa7-9af2-93f6ad610a98 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21D-A068-02 5da15621-bbfa-4693-85dc-2538a69d7b0a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21R-A00Z-07 ae97b841-ddef-4bed-81ac-0b91627c4ef3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21R-A00Z-07 ae97b841-ddef-4bed-81ac-0b91627c4ef3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011829_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21R-A00Z-07 ae97b841-ddef-4bed-81ac-0b91627c4ef3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011829_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21R-A00Z-07 ae97b841-ddef-4bed-81ac-0b91627c4ef3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011829_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21R-A010-13 7a668618-de19-4028-b5f6-f7081b24f145 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21R-A010-13 7a668618-de19-4028-b5f6-f7081b24f145 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A03X-01A-21R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21R-A010-13 7a668618-de19-4028-b5f6-f7081b24f145 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A03X-01A-21R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21W-A019-09 f177234e-e0a7-4f85-b73d-48e0080c805d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21W-A019-09 f177234e-e0a7-4f85-b73d-48e0080c805d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21W-A020-08 032f296d-34cf-4c61-b02b-c0a75ac17eeb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21X-A023-09 829c64f9-08ec-4bbc-bac8-ca97c2197b19 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03X TCGA-AN-A03X-01A TCGA-AN-A03X-01A-21X-A024-08 1a894cb3-7ac3-4822-9130-3db8d8eb8427 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03X TCGA-AN-A03X-10A TCGA-AN-A03X-10A-01D-A012-01 0f5dc4a7-a798-442e-bb2a-0acd2670a5ac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03X TCGA-AN-A03X-10A TCGA-AN-A03X-10A-01D-A012-01 0f5dc4a7-a798-442e-bb2a-0acd2670a5ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C04_628568.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-AN-A03X TCGA-AN-A03X-10A TCGA-AN-A03X-10A-01D-A012-01 0f5dc4a7-a798-442e-bb2a-0acd2670a5ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C04_628568.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A03X TCGA-AN-A03X-10A TCGA-AN-A03X-10A-01D-A012-01 0f5dc4a7-a798-442e-bb2a-0acd2670a5ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C04_628568.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A03X TCGA-AN-A03X-10A TCGA-AN-A03X-10A-01D-A012-01 0f5dc4a7-a798-442e-bb2a-0acd2670a5ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C04_628568.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A03X TCGA-AN-A03X-10A TCGA-AN-A03X-10A-01D-A012-01 0f5dc4a7-a798-442e-bb2a-0acd2670a5ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C04_628568.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A03X TCGA-AN-A03X-10A TCGA-AN-A03X-10A-01D-A012-01 0f5dc4a7-a798-442e-bb2a-0acd2670a5ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C04_628568.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A03X TCGA-AN-A03X-10A TCGA-AN-A03X-10A-01D-A012-01 0f5dc4a7-a798-442e-bb2a-0acd2670a5ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C04_628568.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A03X TCGA-AN-A03X-10A TCGA-AN-A03X-10A-01D-A012-01 0f5dc4a7-a798-442e-bb2a-0acd2670a5ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C04_628568.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-AN-A03X TCGA-AN-A03X-10A TCGA-AN-A03X-10A-01D-A017-09 e308cfff-92b8-429a-b520-2e62fc611cae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03X TCGA-AN-A03X-10A TCGA-AN-A03X-10A-01D-A018-08 18db1a0c-c575-428e-b716-35d5d9b3c988 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03X TCGA-AN-A03X-10A TCGA-AN-A03X-10A-01D-A069-02 38bb6dc8-1feb-4b9c-b5a2-45b7bcf851f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03X TCGA-AN-A03X-10A TCGA-AN-A03X-10A-01W-A021-09 222e0fba-5b47-4ee3-b4ff-81e1a15372c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03X TCGA-AN-A03X-10A TCGA-AN-A03X-10A-01W-A021-09 222e0fba-5b47-4ee3-b4ff-81e1a15372c1 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A03X TCGA-AN-A03X-10A TCGA-AN-A03X-10A-01W-A022-08 4691d874-2c77-46b2-adc1-bfba62e16768 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03X TCGA-AN-A03X-10A TCGA-AN-A03X-10A-01X-A025-09 97881942-6152-4211-aa24-69fc78843c24 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03X TCGA-AN-A03X-10A TCGA-AN-A03X-10A-01X-A026-08 4685c848-95b9-4d29-a781-e4eb5639f7f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21D-A00Y-05 2eef9b0e-26ca-49e4-a0b7-22808f059aa7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21D-A00Y-05 2eef9b0e-26ca-49e4-a0b7-22808f059aa7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-AN-A03Y-01A-21D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21D-A00Y-05 2eef9b0e-26ca-49e4-a0b7-22808f059aa7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-AN-A03Y-01A-21D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21D-A00Y-05 2eef9b0e-26ca-49e4-a0b7-22808f059aa7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-AN-A03Y-01A-21D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21D-A011-01 da97f597-b09e-40b2-8517-e98c3e643ce3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21D-A011-01 da97f597-b09e-40b2-8517-e98c3e643ce3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B01_628512.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21D-A011-01 da97f597-b09e-40b2-8517-e98c3e643ce3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B01_628512.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21D-A011-01 da97f597-b09e-40b2-8517-e98c3e643ce3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B01_628512.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21D-A011-01 da97f597-b09e-40b2-8517-e98c3e643ce3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B01_628512.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21D-A011-01 da97f597-b09e-40b2-8517-e98c3e643ce3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B01_628512.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21D-A011-01 da97f597-b09e-40b2-8517-e98c3e643ce3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B01_628512.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21D-A011-01 da97f597-b09e-40b2-8517-e98c3e643ce3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B01_628512.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21D-A011-01 da97f597-b09e-40b2-8517-e98c3e643ce3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B01_628512.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21D-A015-09 2a2ddb94-0c27-4874-9810-14617b4f40a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21D-A016-08 634d028c-5bbe-4557-a6d9-ab9e1c0bfb11 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21D-A068-02 32ae891a-c596-4246-be7f-3a9125805552 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21R-A00Z-07 7509b7dc-18cc-4430-ad93-fa598fc97330 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21R-A00Z-07 7509b7dc-18cc-4430-ad93-fa598fc97330 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011847_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21R-A00Z-07 7509b7dc-18cc-4430-ad93-fa598fc97330 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011847_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21R-A00Z-07 7509b7dc-18cc-4430-ad93-fa598fc97330 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011847_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21R-A010-13 5904ff8e-2582-4da0-a8d1-dc0883b54f40 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21R-A010-13 5904ff8e-2582-4da0-a8d1-dc0883b54f40 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A03Y-01A-21R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21R-A010-13 5904ff8e-2582-4da0-a8d1-dc0883b54f40 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A03Y-01A-21R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21W-A019-09 f4849adc-b6e8-40bd-9de4-dc5bb37d2a79 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21W-A019-09 f4849adc-b6e8-40bd-9de4-dc5bb37d2a79 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21W-A020-08 3a011c91-899a-4754-ba93-ea4e0655a2ad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21X-A023-09 27dbf66d-bd0e-44e5-ae98-b2289d9a2995 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-01A TCGA-AN-A03Y-01A-21X-A024-08 abb237c1-6d8c-49ce-af47-b06c58c00ae3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-10A TCGA-AN-A03Y-10A-01D-A012-01 1a3b2885-a2c4-4aed-a970-8aeeb2051877 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-10A TCGA-AN-A03Y-10A-01D-A012-01 1a3b2885-a2c4-4aed-a970-8aeeb2051877 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B02_628416.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-AN-A03Y TCGA-AN-A03Y-10A TCGA-AN-A03Y-10A-01D-A012-01 1a3b2885-a2c4-4aed-a970-8aeeb2051877 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B02_628416.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-10A TCGA-AN-A03Y-10A-01D-A012-01 1a3b2885-a2c4-4aed-a970-8aeeb2051877 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B02_628416.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-10A TCGA-AN-A03Y-10A-01D-A012-01 1a3b2885-a2c4-4aed-a970-8aeeb2051877 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B02_628416.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-10A TCGA-AN-A03Y-10A-01D-A012-01 1a3b2885-a2c4-4aed-a970-8aeeb2051877 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B02_628416.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-10A TCGA-AN-A03Y-10A-01D-A012-01 1a3b2885-a2c4-4aed-a970-8aeeb2051877 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B02_628416.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-10A TCGA-AN-A03Y-10A-01D-A012-01 1a3b2885-a2c4-4aed-a970-8aeeb2051877 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B02_628416.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-10A TCGA-AN-A03Y-10A-01D-A012-01 1a3b2885-a2c4-4aed-a970-8aeeb2051877 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B02_628416.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-10A TCGA-AN-A03Y-10A-01D-A017-09 cb421a13-1d37-4427-af1f-8e96975a1694 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-10A TCGA-AN-A03Y-10A-01D-A018-08 6998d624-d736-49d0-83c9-e7751804de65 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-10A TCGA-AN-A03Y-10A-01D-A069-02 feb8dd63-2023-454e-b51a-f017e8402eb5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-10A TCGA-AN-A03Y-10A-01W-A021-09 c75fcb7d-04da-4c92-a5cd-9a34a370773c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-10A TCGA-AN-A03Y-10A-01W-A021-09 c75fcb7d-04da-4c92-a5cd-9a34a370773c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-10A TCGA-AN-A03Y-10A-01W-A022-08 40434aa6-95c5-4cdc-996a-1946bc96e160 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-10A TCGA-AN-A03Y-10A-01X-A025-09 e7b79cfc-8290-4fe0-8a58-eb10f555bd5c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A03Y TCGA-AN-A03Y-10A TCGA-AN-A03Y-10A-01X-A026-08 817768d3-a4cd-4d39-8824-43c289cd7ddf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A03Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11D-A032-05 50c60a77-9bb3-44f5-87f5-9cb6bdc9702d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A041.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11D-A032-05 50c60a77-9bb3-44f5-87f5-9cb6bdc9702d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AN-A041-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11D-A032-05 50c60a77-9bb3-44f5-87f5-9cb6bdc9702d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AN-A041-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11D-A032-05 50c60a77-9bb3-44f5-87f5-9cb6bdc9702d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AN-A041-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11D-A033-02 7c2b8e58-833c-493c-b80d-5fdf2659f9a3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A041.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11D-A036-01 e9846666-467e-4ae9-b9c3-c749fb7cc6c3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A041.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11D-A036-01 e9846666-467e-4ae9-b9c3-c749fb7cc6c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A01_667050.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11D-A036-01 e9846666-467e-4ae9-b9c3-c749fb7cc6c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A01_667050.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11D-A036-01 e9846666-467e-4ae9-b9c3-c749fb7cc6c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A01_667050.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11D-A036-01 e9846666-467e-4ae9-b9c3-c749fb7cc6c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A01_667050.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11D-A036-01 e9846666-467e-4ae9-b9c3-c749fb7cc6c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A01_667050.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11D-A036-01 e9846666-467e-4ae9-b9c3-c749fb7cc6c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A01_667050.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11D-A036-01 e9846666-467e-4ae9-b9c3-c749fb7cc6c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A01_667050.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11D-A036-01 e9846666-467e-4ae9-b9c3-c749fb7cc6c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A01_667050.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11D-A044-08 0303bc2a-8c67-46dd-a923-781d8068625d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A041.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11D-A045-09 2a5f69fb-a8ce-4ce2-9203-42fcbc940ebd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A041.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11R-A034-07 dc131436-aa38-4601-a42e-e3ad746d5be3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A041.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11R-A034-07 dc131436-aa38-4601-a42e-e3ad746d5be3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012060_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11R-A034-07 dc131436-aa38-4601-a42e-e3ad746d5be3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012060_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11R-A034-07 dc131436-aa38-4601-a42e-e3ad746d5be3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012060_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11R-A034-07 dc131436-aa38-4601-a42e-e3ad746d5be3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_594096.TCGA-AN-A041-01A-11R-A034-07.110218_UNC12-SN629_0062_B81DEHABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11R-A034-07 dc131436-aa38-4601-a42e-e3ad746d5be3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_594103.TCGA-AN-A041-01A-11R-A034-07.110218_UNC12-SN629_0062_B81DEHABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11R-A034-07 dc131436-aa38-4601-a42e-e3ad746d5be3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_594145.TCGA-AN-A041-01A-11R-A034-07.110218_UNC12-SN629_0062_B81DEHABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11R-A035-13 60e62da7-5a04-407a-9bfe-00b4be284482 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A041.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11R-A035-13 60e62da7-5a04-407a-9bfe-00b4be284482 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A041-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11R-A035-13 60e62da7-5a04-407a-9bfe-00b4be284482 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A041-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11W-A050-09 f18c7389-6c8d-485f-a7f7-a450a42e3719 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A041.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11W-A050-09 f18c7389-6c8d-485f-a7f7-a450a42e3719 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11W-A050-09 f18c7389-6c8d-485f-a7f7-a450a42e3719 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11W-A051-08 63b8d49a-87c4-4c69-a00f-0b7eca43d832 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A041.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11X-A048-08 36af7d2f-a880-4877-8496-5e2bf0953ec7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A041.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A041 TCGA-AN-A041-01A TCGA-AN-A041-01A-11X-A049-09 baef756b-d708-4630-ab3a-73b75cdb0e60 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A041.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A041 TCGA-AN-A041-10A TCGA-AN-A041-10A-01D-A031-02 ae87fb14-b383-411b-ba43-e28e841c471e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A041.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A041 TCGA-AN-A041-10A TCGA-AN-A041-10A-01D-A037-01 3c71dba4-ec13-465b-8765-19b5e1ddc6cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A041.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A041 TCGA-AN-A041-10A TCGA-AN-A041-10A-01D-A037-01 3c71dba4-ec13-465b-8765-19b5e1ddc6cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E02_667000.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A041 TCGA-AN-A041-10A TCGA-AN-A041-10A-01D-A037-01 3c71dba4-ec13-465b-8765-19b5e1ddc6cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E02_667000.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A041 TCGA-AN-A041-10A TCGA-AN-A041-10A-01D-A037-01 3c71dba4-ec13-465b-8765-19b5e1ddc6cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E02_667000.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A041 TCGA-AN-A041-10A TCGA-AN-A041-10A-01D-A037-01 3c71dba4-ec13-465b-8765-19b5e1ddc6cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E02_667000.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A041 TCGA-AN-A041-10A TCGA-AN-A041-10A-01D-A037-01 3c71dba4-ec13-465b-8765-19b5e1ddc6cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E02_667000.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A041 TCGA-AN-A041-10A TCGA-AN-A041-10A-01D-A037-01 3c71dba4-ec13-465b-8765-19b5e1ddc6cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E02_667000.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A041 TCGA-AN-A041-10A TCGA-AN-A041-10A-01D-A037-01 3c71dba4-ec13-465b-8765-19b5e1ddc6cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E02_667000.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A041 TCGA-AN-A041-10A TCGA-AN-A041-10A-01D-A037-01 3c71dba4-ec13-465b-8765-19b5e1ddc6cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E02_667000.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A041 TCGA-AN-A041-10A TCGA-AN-A041-10A-01D-A046-08 b9843bbf-edb3-40d8-a990-db7e2fbb25f2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A041.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A041 TCGA-AN-A041-10A TCGA-AN-A041-10A-01D-A047-09 55fbaee6-eb8f-46c7-aead-fadde6be6573 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A041.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A041 TCGA-AN-A041-10A TCGA-AN-A041-10A-01W-A053-08 3fff8c91-0e89-4e00-8d32-fcdb649e9f7c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A041.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A041 TCGA-AN-A041-10A TCGA-AN-A041-10A-01W-A055-09 69c06be5-4545-42b9-85ea-dbb7e260ae00 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A041.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A041 TCGA-AN-A041-10A TCGA-AN-A041-10A-01W-A055-09 69c06be5-4545-42b9-85ea-dbb7e260ae00 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-AN-A041 TCGA-AN-A041-10A TCGA-AN-A041-10A-01W-A055-09 69c06be5-4545-42b9-85ea-dbb7e260ae00 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A041 TCGA-AN-A041-10A TCGA-AN-A041-10A-01X-A052-08 6f0ac9cf-7e9f-43c0-ab28-150f31f29083 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A041.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A041 TCGA-AN-A041-10A TCGA-AN-A041-10A-01X-A054-09 9c87959a-7f33-4141-ac4b-0b153b0c5d61 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A041.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21D-A032-05 ebba0fc0-8380-45ba-a4dc-632a8543bf41 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A046.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21D-A032-05 ebba0fc0-8380-45ba-a4dc-632a8543bf41 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AN-A046-01A-21D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21D-A032-05 ebba0fc0-8380-45ba-a4dc-632a8543bf41 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AN-A046-01A-21D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21D-A032-05 ebba0fc0-8380-45ba-a4dc-632a8543bf41 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AN-A046-01A-21D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21D-A033-02 7fc3a21d-f7fe-474e-905e-8f503cd34f4b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A046.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21D-A036-01 c62fa764-5d48-4bbc-ad18-6e0aff57fa4f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A046.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21D-A036-01 c62fa764-5d48-4bbc-ad18-6e0aff57fa4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B03_667046.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21D-A036-01 c62fa764-5d48-4bbc-ad18-6e0aff57fa4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B03_667046.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21D-A036-01 c62fa764-5d48-4bbc-ad18-6e0aff57fa4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B03_667046.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21D-A036-01 c62fa764-5d48-4bbc-ad18-6e0aff57fa4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B03_667046.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21D-A036-01 c62fa764-5d48-4bbc-ad18-6e0aff57fa4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B03_667046.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21D-A036-01 c62fa764-5d48-4bbc-ad18-6e0aff57fa4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B03_667046.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21D-A036-01 c62fa764-5d48-4bbc-ad18-6e0aff57fa4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B03_667046.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21D-A036-01 c62fa764-5d48-4bbc-ad18-6e0aff57fa4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B03_667046.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21D-A044-08 d371585c-0e14-45f5-b296-160d9261825d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A046.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21D-A045-09 732f1a50-2b82-4ea5-8d44-c3b90e6dca04 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A046.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21R-A034-07 20eb1da4-ef70-49dd-956f-18d65725ba27 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A046.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21R-A034-07 20eb1da4-ef70-49dd-956f-18d65725ba27 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012061_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21R-A034-07 20eb1da4-ef70-49dd-956f-18d65725ba27 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012061_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21R-A034-07 20eb1da4-ef70-49dd-956f-18d65725ba27 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012061_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21R-A034-07 20eb1da4-ef70-49dd-956f-18d65725ba27 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_594093.TCGA-AN-A046-01A-21R-A034-07.110218_UNC12-SN629_0062_B81DEHABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21R-A034-07 20eb1da4-ef70-49dd-956f-18d65725ba27 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_594101.TCGA-AN-A046-01A-21R-A034-07.110218_UNC12-SN629_0062_B81DEHABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21R-A034-07 20eb1da4-ef70-49dd-956f-18d65725ba27 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_594142.TCGA-AN-A046-01A-21R-A034-07.110218_UNC12-SN629_0062_B81DEHABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21R-A035-13 7140c7c1-cba8-41f3-82ff-fb34cd0d8ca2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A046.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21R-A035-13 7140c7c1-cba8-41f3-82ff-fb34cd0d8ca2 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A046-01A-21R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21R-A035-13 7140c7c1-cba8-41f3-82ff-fb34cd0d8ca2 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A046-01A-21R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21W-A050-09 696dfa31-8ff8-4b4f-a6e5-b59c34fae1f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A046.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21W-A051-08 0bc7b1e8-67be-462d-bf55-b71648ca4727 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A046.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21X-A048-08 180989ad-10c3-43ff-9494-e4395468e864 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A046.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A046 TCGA-AN-A046-01A TCGA-AN-A046-01A-21X-A049-09 70585480-d007-4e9c-8b15-beb08313b6a4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A046.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A046 TCGA-AN-A046-10A TCGA-AN-A046-10A-01D-A031-02 c634eea0-133e-4540-9251-ca860882208d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A046.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A046 TCGA-AN-A046-10A TCGA-AN-A046-10A-01D-A037-01 6f853697-3b85-4685-8f68-1c66828ef8ba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A046.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A046 TCGA-AN-A046-10A TCGA-AN-A046-10A-01D-A037-01 6f853697-3b85-4685-8f68-1c66828ef8ba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F05_666930.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A046 TCGA-AN-A046-10A TCGA-AN-A046-10A-01D-A037-01 6f853697-3b85-4685-8f68-1c66828ef8ba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F05_666930.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A046 TCGA-AN-A046-10A TCGA-AN-A046-10A-01D-A037-01 6f853697-3b85-4685-8f68-1c66828ef8ba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F05_666930.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A046 TCGA-AN-A046-10A TCGA-AN-A046-10A-01D-A037-01 6f853697-3b85-4685-8f68-1c66828ef8ba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F05_666930.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A046 TCGA-AN-A046-10A TCGA-AN-A046-10A-01D-A037-01 6f853697-3b85-4685-8f68-1c66828ef8ba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F05_666930.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A046 TCGA-AN-A046-10A TCGA-AN-A046-10A-01D-A037-01 6f853697-3b85-4685-8f68-1c66828ef8ba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F05_666930.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A046 TCGA-AN-A046-10A TCGA-AN-A046-10A-01D-A037-01 6f853697-3b85-4685-8f68-1c66828ef8ba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F05_666930.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A046 TCGA-AN-A046-10A TCGA-AN-A046-10A-01D-A037-01 6f853697-3b85-4685-8f68-1c66828ef8ba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F05_666930.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A046 TCGA-AN-A046-10A TCGA-AN-A046-10A-01D-A046-08 9274ecd8-cb72-4aab-bb9b-766f2e1d3eb7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A046.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A046 TCGA-AN-A046-10A TCGA-AN-A046-10A-01D-A047-09 edd7f88b-5c8c-446e-8daa-cd8cad41ef47 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A046.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A046 TCGA-AN-A046-10A TCGA-AN-A046-10A-01W-A053-08 2de15869-ea93-45a5-b36b-13d22e04e4f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A046.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A046 TCGA-AN-A046-10A TCGA-AN-A046-10A-01W-A055-09 7fd1a063-e742-4ebc-acbd-c81ba11f1cc3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A046.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A046 TCGA-AN-A046-10A TCGA-AN-A046-10A-01X-A052-08 8e490f11-6cc8-4820-8cee-308f88eea008 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A046.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A046 TCGA-AN-A046-10A TCGA-AN-A046-10A-01X-A054-09 8b29c2dd-5ad9-4dac-9f58-3425a15d87d8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A046.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21D-A00Y-05 f1654bdd-1fa9-41bb-b9ed-36934a51ad2b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A049.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21D-A00Y-05 f1654bdd-1fa9-41bb-b9ed-36934a51ad2b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-AN-A049-01A-21D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21D-A00Y-05 f1654bdd-1fa9-41bb-b9ed-36934a51ad2b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-AN-A049-01A-21D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21D-A00Y-05 f1654bdd-1fa9-41bb-b9ed-36934a51ad2b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-AN-A049-01A-21D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21D-A011-01 4b29c2ad-b966-4f56-b97b-35f5d4aea434 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A049.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21D-A011-01 4b29c2ad-b966-4f56-b97b-35f5d4aea434 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C01_628430.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21D-A011-01 4b29c2ad-b966-4f56-b97b-35f5d4aea434 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C01_628430.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21D-A011-01 4b29c2ad-b966-4f56-b97b-35f5d4aea434 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C01_628430.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21D-A011-01 4b29c2ad-b966-4f56-b97b-35f5d4aea434 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C01_628430.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21D-A011-01 4b29c2ad-b966-4f56-b97b-35f5d4aea434 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C01_628430.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21D-A011-01 4b29c2ad-b966-4f56-b97b-35f5d4aea434 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C01_628430.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21D-A011-01 4b29c2ad-b966-4f56-b97b-35f5d4aea434 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C01_628430.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21D-A011-01 4b29c2ad-b966-4f56-b97b-35f5d4aea434 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C01_628430.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21D-A015-09 a3f5e699-2739-4dbe-b434-302eee7f702f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A049.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21D-A016-08 2df2b176-0824-4103-8495-da234262aa58 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A049.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21D-A068-02 b0a4c3ef-55a4-414f-83a3-4f4d215a8fe8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A049.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21R-A00Z-07 53a89c04-16e5-4cc3-838c-6b6d1b8ea0c0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A049.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21R-A00Z-07 53a89c04-16e5-4cc3-838c-6b6d1b8ea0c0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011859_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21R-A00Z-07 53a89c04-16e5-4cc3-838c-6b6d1b8ea0c0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011859_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21R-A00Z-07 53a89c04-16e5-4cc3-838c-6b6d1b8ea0c0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011859_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21R-A00Z-07 53a89c04-16e5-4cc3-838c-6b6d1b8ea0c0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445662.TCGA-AN-A049-01A-21R-A00Z-07.110304_UNC12-SN629_0066_BC0086ABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21R-A00Z-07 53a89c04-16e5-4cc3-838c-6b6d1b8ea0c0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445774.TCGA-AN-A049-01A-21R-A00Z-07.110304_UNC12-SN629_0066_BC0086ABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21R-A00Z-07 53a89c04-16e5-4cc3-838c-6b6d1b8ea0c0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445789.TCGA-AN-A049-01A-21R-A00Z-07.110304_UNC12-SN629_0066_BC0086ABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21R-A010-13 634ac75c-e814-43e2-b9ed-cc0e30279435 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A049.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21R-A010-13 634ac75c-e814-43e2-b9ed-cc0e30279435 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A049-01A-21R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21R-A010-13 634ac75c-e814-43e2-b9ed-cc0e30279435 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A049-01A-21R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21W-A019-09 1d0c87ef-6840-4051-85d5-7fc2c544578c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A049.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21W-A019-09 1d0c87ef-6840-4051-85d5-7fc2c544578c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21W-A020-08 c1913e6f-5f4d-4767-ad75-fdc0c26590c2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A049.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21X-A023-09 60b8eb33-990e-4945-926e-9459e81d8584 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A049.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A049 TCGA-AN-A049-01A TCGA-AN-A049-01A-21X-A024-08 c0ffc891-cacc-462d-9e37-bc4dc79fd736 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A049.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A049 TCGA-AN-A049-10A TCGA-AN-A049-10A-01D-A012-01 f3325464-9ce8-440f-9e9b-c0774b5f3ef5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A049.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A049 TCGA-AN-A049-10A TCGA-AN-A049-10A-01D-A012-01 f3325464-9ce8-440f-9e9b-c0774b5f3ef5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E01_628406.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-AN-A049 TCGA-AN-A049-10A TCGA-AN-A049-10A-01D-A012-01 f3325464-9ce8-440f-9e9b-c0774b5f3ef5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E01_628406.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A049 TCGA-AN-A049-10A TCGA-AN-A049-10A-01D-A012-01 f3325464-9ce8-440f-9e9b-c0774b5f3ef5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E01_628406.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A049 TCGA-AN-A049-10A TCGA-AN-A049-10A-01D-A012-01 f3325464-9ce8-440f-9e9b-c0774b5f3ef5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E01_628406.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A049 TCGA-AN-A049-10A TCGA-AN-A049-10A-01D-A012-01 f3325464-9ce8-440f-9e9b-c0774b5f3ef5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E01_628406.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A049 TCGA-AN-A049-10A TCGA-AN-A049-10A-01D-A012-01 f3325464-9ce8-440f-9e9b-c0774b5f3ef5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E01_628406.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A049 TCGA-AN-A049-10A TCGA-AN-A049-10A-01D-A012-01 f3325464-9ce8-440f-9e9b-c0774b5f3ef5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E01_628406.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A049 TCGA-AN-A049-10A TCGA-AN-A049-10A-01D-A012-01 f3325464-9ce8-440f-9e9b-c0774b5f3ef5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E01_628406.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-AN-A049 TCGA-AN-A049-10A TCGA-AN-A049-10A-01D-A017-09 ba2cbeb1-40de-436a-a69e-7ec2dca0ffbf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A049.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A049 TCGA-AN-A049-10A TCGA-AN-A049-10A-01D-A018-08 0ecc1625-2da2-45b5-b1ea-0f6b30b43228 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A049.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A049 TCGA-AN-A049-10A TCGA-AN-A049-10A-01D-A069-02 1d7679ad-4958-448b-9fa1-bd04eaddd351 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A049.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A049 TCGA-AN-A049-10A TCGA-AN-A049-10A-01W-A021-09 0a43cf49-03cc-4aa0-bde2-1107ce131db4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A049.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A049 TCGA-AN-A049-10A TCGA-AN-A049-10A-01W-A021-09 0a43cf49-03cc-4aa0-bde2-1107ce131db4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A049 TCGA-AN-A049-10A TCGA-AN-A049-10A-01W-A022-08 3ee659e0-2fad-4eeb-af1e-8ee6c6d5d81f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A049.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A049 TCGA-AN-A049-10A TCGA-AN-A049-10A-01X-A025-09 cbed6f4b-ccb1-4160-906b-37dcd8367036 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A049.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A049 TCGA-AN-A049-10A TCGA-AN-A049-10A-01X-A026-08 3ee08b68-f884-4fed-a001-222a78f302f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A049.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21D-A032-05 27ced191-19a6-4c2e-9ed8-6a58bae11d07 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21D-A032-05 27ced191-19a6-4c2e-9ed8-6a58bae11d07 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AN-A04A-01A-21D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21D-A032-05 27ced191-19a6-4c2e-9ed8-6a58bae11d07 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AN-A04A-01A-21D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21D-A032-05 27ced191-19a6-4c2e-9ed8-6a58bae11d07 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AN-A04A-01A-21D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21D-A033-02 22f9e6ca-a99d-4755-a48d-1dab479d04f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21D-A036-01 928be25e-9343-4042-a5c0-851465def55b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21D-A036-01 928be25e-9343-4042-a5c0-851465def55b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B05_666944.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21D-A036-01 928be25e-9343-4042-a5c0-851465def55b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B05_666944.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21D-A036-01 928be25e-9343-4042-a5c0-851465def55b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B05_666944.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21D-A036-01 928be25e-9343-4042-a5c0-851465def55b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B05_666944.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21D-A036-01 928be25e-9343-4042-a5c0-851465def55b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B05_666944.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21D-A036-01 928be25e-9343-4042-a5c0-851465def55b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B05_666944.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21D-A036-01 928be25e-9343-4042-a5c0-851465def55b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B05_666944.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21D-A036-01 928be25e-9343-4042-a5c0-851465def55b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B05_666944.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21D-A044-08 388187fb-704f-44a6-8820-e0fa65a08104 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21D-A045-09 85fd3697-2077-4e32-8d34-43490dc11949 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21R-A034-07 7e09faf6-137d-4d33-98dd-80c48af7ebab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21R-A034-07 7e09faf6-137d-4d33-98dd-80c48af7ebab Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012062_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21R-A034-07 7e09faf6-137d-4d33-98dd-80c48af7ebab Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012062_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21R-A034-07 7e09faf6-137d-4d33-98dd-80c48af7ebab Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012062_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21R-A034-07 7e09faf6-137d-4d33-98dd-80c48af7ebab RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_594094.TCGA-AN-A04A-01A-21R-A034-07.110218_UNC12-SN629_0062_B81DEHABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21R-A034-07 7e09faf6-137d-4d33-98dd-80c48af7ebab RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_594105.TCGA-AN-A04A-01A-21R-A034-07.110218_UNC12-SN629_0062_B81DEHABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21R-A034-07 7e09faf6-137d-4d33-98dd-80c48af7ebab RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_594141.TCGA-AN-A04A-01A-21R-A034-07.110218_UNC12-SN629_0062_B81DEHABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21R-A035-13 39e9a114-c460-4512-8350-b2ff9fca39da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21R-A035-13 39e9a114-c460-4512-8350-b2ff9fca39da miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A04A-01A-21R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21R-A035-13 39e9a114-c460-4512-8350-b2ff9fca39da miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A04A-01A-21R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21W-A050-09 7e8f250c-6162-4049-8559-5bfdf054b021 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21W-A050-09 7e8f250c-6162-4049-8559-5bfdf054b021 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21W-A051-08 16c862ac-b666-4b06-a0b5-efdd1d19911a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21X-A048-08 a1f546df-ef26-4189-88e5-849341805952 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04A TCGA-AN-A04A-01A TCGA-AN-A04A-01A-21X-A049-09 a3832a45-edc6-4c01-ba88-3e82991c4382 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04A TCGA-AN-A04A-10A TCGA-AN-A04A-10A-01D-A031-02 059aa94a-bc90-4d0b-8afc-bae3a2764466 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04A TCGA-AN-A04A-10A TCGA-AN-A04A-10A-01D-A037-01 10ea8293-4f90-4380-b187-3facf830986c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04A TCGA-AN-A04A-10A TCGA-AN-A04A-10A-01D-A037-01 10ea8293-4f90-4380-b187-3facf830986c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D07_667028.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A04A TCGA-AN-A04A-10A TCGA-AN-A04A-10A-01D-A037-01 10ea8293-4f90-4380-b187-3facf830986c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D07_667028.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04A TCGA-AN-A04A-10A TCGA-AN-A04A-10A-01D-A037-01 10ea8293-4f90-4380-b187-3facf830986c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D07_667028.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04A TCGA-AN-A04A-10A TCGA-AN-A04A-10A-01D-A037-01 10ea8293-4f90-4380-b187-3facf830986c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D07_667028.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04A TCGA-AN-A04A-10A TCGA-AN-A04A-10A-01D-A037-01 10ea8293-4f90-4380-b187-3facf830986c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D07_667028.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04A TCGA-AN-A04A-10A TCGA-AN-A04A-10A-01D-A037-01 10ea8293-4f90-4380-b187-3facf830986c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D07_667028.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04A TCGA-AN-A04A-10A TCGA-AN-A04A-10A-01D-A037-01 10ea8293-4f90-4380-b187-3facf830986c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D07_667028.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04A TCGA-AN-A04A-10A TCGA-AN-A04A-10A-01D-A037-01 10ea8293-4f90-4380-b187-3facf830986c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D07_667028.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A04A TCGA-AN-A04A-10A TCGA-AN-A04A-10A-01D-A046-08 9d152cf3-cf44-4e43-ab73-0b1dc4494769 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04A TCGA-AN-A04A-10A TCGA-AN-A04A-10A-01D-A047-09 a1520caa-5733-4ac9-b51e-a29c7607ecee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04A TCGA-AN-A04A-10A TCGA-AN-A04A-10A-01W-A053-08 ef170c76-4fc4-460e-b49f-c4d4cc3a95b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04A TCGA-AN-A04A-10A TCGA-AN-A04A-10A-01W-A055-09 2761c6e7-affc-4ffe-a72a-1d1203d574c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04A TCGA-AN-A04A-10A TCGA-AN-A04A-10A-01W-A055-09 2761c6e7-affc-4ffe-a72a-1d1203d574c4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A04A TCGA-AN-A04A-10A TCGA-AN-A04A-10A-01X-A052-08 791619db-c76a-47a3-b19f-5c1080b3d333 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04A TCGA-AN-A04A-10A TCGA-AN-A04A-10A-01X-A054-09 03bdab94-6870-404e-b05c-790b2d05658e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21D-A032-05 24c2a515-1747-4735-8c84-543eb9e2d52c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21D-A032-05 24c2a515-1747-4735-8c84-543eb9e2d52c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AN-A04C-01A-21D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21D-A032-05 24c2a515-1747-4735-8c84-543eb9e2d52c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AN-A04C-01A-21D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21D-A032-05 24c2a515-1747-4735-8c84-543eb9e2d52c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AN-A04C-01A-21D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21D-A033-02 1f8cc5f6-4086-4667-bab9-962a5909ee1f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21D-A036-01 87d149dc-fcf5-4c2b-8c3e-f866ed274cee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21D-A036-01 87d149dc-fcf5-4c2b-8c3e-f866ed274cee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C07_666876.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21D-A036-01 87d149dc-fcf5-4c2b-8c3e-f866ed274cee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C07_666876.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21D-A036-01 87d149dc-fcf5-4c2b-8c3e-f866ed274cee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C07_666876.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21D-A036-01 87d149dc-fcf5-4c2b-8c3e-f866ed274cee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C07_666876.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21D-A036-01 87d149dc-fcf5-4c2b-8c3e-f866ed274cee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C07_666876.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21D-A036-01 87d149dc-fcf5-4c2b-8c3e-f866ed274cee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C07_666876.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21D-A036-01 87d149dc-fcf5-4c2b-8c3e-f866ed274cee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C07_666876.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21D-A036-01 87d149dc-fcf5-4c2b-8c3e-f866ed274cee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_C07_666876.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21D-A044-08 46ee8560-38b6-4bd7-b210-11b68133798b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21D-A045-09 1d3349b4-097b-4505-9463-d772a50d1dc4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21R-A034-07 b713c549-0c1f-4c64-bffd-a3b5b693d5a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21R-A034-07 b713c549-0c1f-4c64-bffd-a3b5b693d5a6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012063_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21R-A034-07 b713c549-0c1f-4c64-bffd-a3b5b693d5a6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012063_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21R-A034-07 b713c549-0c1f-4c64-bffd-a3b5b693d5a6 Expression-Genes AgilentG4502A_07_3 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21R-A035-13 0af7636a-9e52-4536-8356-421de09616e8 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A04C-01A-21R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21R-A035-13 0af7636a-9e52-4536-8356-421de09616e8 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A04C-01A-21R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21W-A050-09 c1302f79-cc50-487a-9db5-016df85e67d7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21W-A050-09 c1302f79-cc50-487a-9db5-016df85e67d7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21W-A051-08 10e4ea2d-0e9e-403e-9ccf-05593b84261a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21X-A048-08 89694f8c-2975-4623-95e9-2ffbcda83300 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04C TCGA-AN-A04C-01A TCGA-AN-A04C-01A-21X-A049-09 48eec6f9-6019-41a8-8edd-2cc79c93d3b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04C TCGA-AN-A04C-10A TCGA-AN-A04C-10A-01D-A031-02 6809420d-b91f-4c4a-97dc-5a623964a8cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04C TCGA-AN-A04C-10A TCGA-AN-A04C-10A-01D-A037-01 d0d846fe-6e0d-4589-a999-136dc5728187 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04C TCGA-AN-A04C-10A TCGA-AN-A04C-10A-01D-A037-01 d0d846fe-6e0d-4589-a999-136dc5728187 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D09_666894.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A04C TCGA-AN-A04C-10A TCGA-AN-A04C-10A-01D-A037-01 d0d846fe-6e0d-4589-a999-136dc5728187 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D09_666894.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04C TCGA-AN-A04C-10A TCGA-AN-A04C-10A-01D-A037-01 d0d846fe-6e0d-4589-a999-136dc5728187 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D09_666894.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04C TCGA-AN-A04C-10A TCGA-AN-A04C-10A-01D-A037-01 d0d846fe-6e0d-4589-a999-136dc5728187 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D09_666894.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04C TCGA-AN-A04C-10A TCGA-AN-A04C-10A-01D-A037-01 d0d846fe-6e0d-4589-a999-136dc5728187 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D09_666894.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04C TCGA-AN-A04C-10A TCGA-AN-A04C-10A-01D-A037-01 d0d846fe-6e0d-4589-a999-136dc5728187 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D09_666894.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04C TCGA-AN-A04C-10A TCGA-AN-A04C-10A-01D-A037-01 d0d846fe-6e0d-4589-a999-136dc5728187 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D09_666894.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04C TCGA-AN-A04C-10A TCGA-AN-A04C-10A-01D-A037-01 d0d846fe-6e0d-4589-a999-136dc5728187 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_D09_666894.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A04C TCGA-AN-A04C-10A TCGA-AN-A04C-10A-01D-A046-08 1e1bd0b7-3e79-463e-8654-a99d1028bb79 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04C TCGA-AN-A04C-10A TCGA-AN-A04C-10A-01D-A047-09 e0036635-4a4e-485d-8e5d-810964be64a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04C TCGA-AN-A04C-10A TCGA-AN-A04C-10A-01D-A047-09 e0036635-4a4e-485d-8e5d-810964be64a2 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A04C TCGA-AN-A04C-10A TCGA-AN-A04C-10A-01W-A053-08 a6f26f00-89d8-4770-adfd-5e89558e60f0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04C TCGA-AN-A04C-10A TCGA-AN-A04C-10A-01W-A055-09 416581a8-f404-47dd-87a7-e957fc4d9b42 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04C TCGA-AN-A04C-10A TCGA-AN-A04C-10A-01X-A052-08 6abbb790-14c0-4127-aa9f-4de8434de795 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04C TCGA-AN-A04C-10A TCGA-AN-A04C-10A-01X-A054-09 d7f42405-2ba6-4e8c-aaa4-883a64e85e95 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21D-A032-05 7424f2f5-7396-4c59-a298-f97ccc73d662 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21D-A032-05 7424f2f5-7396-4c59-a298-f97ccc73d662 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AN-A04D-01A-21D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21D-A032-05 7424f2f5-7396-4c59-a298-f97ccc73d662 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AN-A04D-01A-21D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21D-A032-05 7424f2f5-7396-4c59-a298-f97ccc73d662 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AN-A04D-01A-21D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21D-A033-02 e560a817-acc1-4fe0-ad4a-f081104e7e3b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21D-A036-01 336a5a76-3373-47ac-85ea-c78ba65cd902 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21D-A036-01 336a5a76-3373-47ac-85ea-c78ba65cd902 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B09_666980.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21D-A036-01 336a5a76-3373-47ac-85ea-c78ba65cd902 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B09_666980.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21D-A036-01 336a5a76-3373-47ac-85ea-c78ba65cd902 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B09_666980.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21D-A036-01 336a5a76-3373-47ac-85ea-c78ba65cd902 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B09_666980.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21D-A036-01 336a5a76-3373-47ac-85ea-c78ba65cd902 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B09_666980.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21D-A036-01 336a5a76-3373-47ac-85ea-c78ba65cd902 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B09_666980.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21D-A036-01 336a5a76-3373-47ac-85ea-c78ba65cd902 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B09_666980.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21D-A036-01 336a5a76-3373-47ac-85ea-c78ba65cd902 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B09_666980.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21D-A044-08 3bdc477d-7f3d-42cb-a86f-5600a77fb9a0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21D-A045-09 8d2d688e-eb68-4cec-adcc-1c467c6b805f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21R-A034-07 a09baab9-3eac-4271-9c12-2684642f8869 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21R-A034-07 a09baab9-3eac-4271-9c12-2684642f8869 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012064_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21R-A034-07 a09baab9-3eac-4271-9c12-2684642f8869 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012064_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21R-A034-07 a09baab9-3eac-4271-9c12-2684642f8869 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012064_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21R-A034-07 a09baab9-3eac-4271-9c12-2684642f8869 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_594099.TCGA-AN-A04D-01A-21R-A034-07.110218_UNC12-SN629_0062_B81DEHABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21R-A034-07 a09baab9-3eac-4271-9c12-2684642f8869 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_594123.TCGA-AN-A04D-01A-21R-A034-07.110218_UNC12-SN629_0062_B81DEHABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21R-A034-07 a09baab9-3eac-4271-9c12-2684642f8869 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_594143.TCGA-AN-A04D-01A-21R-A034-07.110218_UNC12-SN629_0062_B81DEHABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21R-A035-13 5be2176b-c86e-4586-bc00-7545c4561cde Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21R-A035-13 5be2176b-c86e-4586-bc00-7545c4561cde miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A04D-01A-21R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21R-A035-13 5be2176b-c86e-4586-bc00-7545c4561cde miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A04D-01A-21R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21W-A050-09 9407735f-19e3-49d0-b783-cd9672dfa6a9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21W-A050-09 9407735f-19e3-49d0-b783-cd9672dfa6a9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21W-A051-08 48e4dea5-6762-4f16-8d3a-b55211e419a5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21X-A048-08 547eea4d-0c67-4751-bb7c-a99b3387d293 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04D TCGA-AN-A04D-01A TCGA-AN-A04D-01A-21X-A049-09 1ea1fd9a-9d4c-429b-84aa-82e86ee06af1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04D TCGA-AN-A04D-10A TCGA-AN-A04D-10A-01D-A031-02 31a8086c-5166-45f7-a435-ac43978552e8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04D TCGA-AN-A04D-10A TCGA-AN-A04D-10A-01D-A037-01 ad21dfc1-05a7-41f2-b93f-10947504bd96 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04D TCGA-AN-A04D-10A TCGA-AN-A04D-10A-01D-A037-01 ad21dfc1-05a7-41f2-b93f-10947504bd96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A08_667016.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A04D TCGA-AN-A04D-10A TCGA-AN-A04D-10A-01D-A037-01 ad21dfc1-05a7-41f2-b93f-10947504bd96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A08_667016.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04D TCGA-AN-A04D-10A TCGA-AN-A04D-10A-01D-A037-01 ad21dfc1-05a7-41f2-b93f-10947504bd96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A08_667016.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04D TCGA-AN-A04D-10A TCGA-AN-A04D-10A-01D-A037-01 ad21dfc1-05a7-41f2-b93f-10947504bd96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A08_667016.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04D TCGA-AN-A04D-10A TCGA-AN-A04D-10A-01D-A037-01 ad21dfc1-05a7-41f2-b93f-10947504bd96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A08_667016.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04D TCGA-AN-A04D-10A TCGA-AN-A04D-10A-01D-A037-01 ad21dfc1-05a7-41f2-b93f-10947504bd96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A08_667016.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04D TCGA-AN-A04D-10A TCGA-AN-A04D-10A-01D-A037-01 ad21dfc1-05a7-41f2-b93f-10947504bd96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A08_667016.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A04D TCGA-AN-A04D-10A TCGA-AN-A04D-10A-01D-A037-01 ad21dfc1-05a7-41f2-b93f-10947504bd96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A08_667016.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A04D TCGA-AN-A04D-10A TCGA-AN-A04D-10A-01D-A046-08 dc070a2f-1f94-4ac0-a8be-f737ccba45c2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04D TCGA-AN-A04D-10A TCGA-AN-A04D-10A-01D-A047-09 9e388f25-0b96-4a7b-af5a-a69396b29a40 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04D TCGA-AN-A04D-10A TCGA-AN-A04D-10A-01W-A053-08 59448f50-0d59-4429-a873-69d4a42405b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04D TCGA-AN-A04D-10A TCGA-AN-A04D-10A-01W-A055-09 f491c9e0-384e-4dc9-973f-d4513f9acef9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04D TCGA-AN-A04D-10A TCGA-AN-A04D-10A-01W-A055-09 f491c9e0-384e-4dc9-973f-d4513f9acef9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A04D TCGA-AN-A04D-10A TCGA-AN-A04D-10A-01X-A052-08 c65ef817-73ff-44a2-a3ab-fe2d7f45f0b3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A04D TCGA-AN-A04D-10A TCGA-AN-A04D-10A-01X-A054-09 80cdcff5-3930-428d-aa8e-f1314eb6b8bb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A04D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11D-A00Y-05 e1e283c0-d616-4224-99b3-0bc86a832d6a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11D-A00Y-05 e1e283c0-d616-4224-99b3-0bc86a832d6a DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-AN-A0AJ-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11D-A00Y-05 e1e283c0-d616-4224-99b3-0bc86a832d6a DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-AN-A0AJ-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11D-A00Y-05 e1e283c0-d616-4224-99b3-0bc86a832d6a DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-AN-A0AJ-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11D-A011-01 48548c7f-466f-419b-b9c1-e600adc7c2fa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11D-A011-01 48548c7f-466f-419b-b9c1-e600adc7c2fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G06_628580.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11D-A011-01 48548c7f-466f-419b-b9c1-e600adc7c2fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G06_628580.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11D-A011-01 48548c7f-466f-419b-b9c1-e600adc7c2fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G06_628580.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11D-A011-01 48548c7f-466f-419b-b9c1-e600adc7c2fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G06_628580.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11D-A011-01 48548c7f-466f-419b-b9c1-e600adc7c2fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G06_628580.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11D-A011-01 48548c7f-466f-419b-b9c1-e600adc7c2fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G06_628580.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11D-A011-01 48548c7f-466f-419b-b9c1-e600adc7c2fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G06_628580.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11D-A011-01 48548c7f-466f-419b-b9c1-e600adc7c2fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G06_628580.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11D-A015-09 0fa05dba-53e9-43ce-9ee4-e6e4bcac5efa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11D-A016-08 befe2a5b-90e9-4b00-b6b3-cdccae92520e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11D-A068-02 52d5c5c8-d47e-4d39-ba72-eaade2d77309 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11R-A00Z-07 cc92e983-2367-4353-ac01-88851fd0f71e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11R-A00Z-07 cc92e983-2367-4353-ac01-88851fd0f71e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011827_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11R-A00Z-07 cc92e983-2367-4353-ac01-88851fd0f71e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011827_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11R-A00Z-07 cc92e983-2367-4353-ac01-88851fd0f71e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011827_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11R-A010-13 db74b2ed-7994-4910-ac2c-32a7cf315123 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11R-A010-13 db74b2ed-7994-4910-ac2c-32a7cf315123 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0AJ-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11R-A010-13 db74b2ed-7994-4910-ac2c-32a7cf315123 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0AJ-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11W-A019-09 97fbce82-0eed-4d70-9af2-57918a4ea8da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11W-A019-09 97fbce82-0eed-4d70-9af2-57918a4ea8da Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11W-A020-08 8eb30b6e-ec03-44fe-a526-ad89032aaff7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11X-A023-09 393eb00e-00e5-41d3-bb4a-728164eb0bc5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-01A TCGA-AN-A0AJ-01A-11X-A024-08 1b3e72b9-9572-401d-b7f1-d48814db4975 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-10A TCGA-AN-A0AJ-10A-01D-A012-01 1e087c40-fbf4-40db-9be0-f6c2a2f1dfa4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-10A TCGA-AN-A0AJ-10A-01D-A012-01 1e087c40-fbf4-40db-9be0-f6c2a2f1dfa4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B12_628442.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-AN-A0AJ TCGA-AN-A0AJ-10A TCGA-AN-A0AJ-10A-01D-A012-01 1e087c40-fbf4-40db-9be0-f6c2a2f1dfa4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B12_628442.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-10A TCGA-AN-A0AJ-10A-01D-A012-01 1e087c40-fbf4-40db-9be0-f6c2a2f1dfa4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B12_628442.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-10A TCGA-AN-A0AJ-10A-01D-A012-01 1e087c40-fbf4-40db-9be0-f6c2a2f1dfa4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B12_628442.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-10A TCGA-AN-A0AJ-10A-01D-A012-01 1e087c40-fbf4-40db-9be0-f6c2a2f1dfa4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B12_628442.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-10A TCGA-AN-A0AJ-10A-01D-A012-01 1e087c40-fbf4-40db-9be0-f6c2a2f1dfa4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B12_628442.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-10A TCGA-AN-A0AJ-10A-01D-A012-01 1e087c40-fbf4-40db-9be0-f6c2a2f1dfa4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B12_628442.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-10A TCGA-AN-A0AJ-10A-01D-A012-01 1e087c40-fbf4-40db-9be0-f6c2a2f1dfa4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B12_628442.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-10A TCGA-AN-A0AJ-10A-01D-A017-09 32ece53d-c677-4309-9eff-284be58f038a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-10A TCGA-AN-A0AJ-10A-01D-A018-08 e2f7f2f6-aa22-476c-83f0-74494abc4d0d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-10A TCGA-AN-A0AJ-10A-01D-A069-02 38cebe26-e349-4c63-9b86-6af1de7566eb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-10A TCGA-AN-A0AJ-10A-01W-A021-09 4450b82b-beee-4327-a851-3b7488a3273c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-10A TCGA-AN-A0AJ-10A-01W-A021-09 4450b82b-beee-4327-a851-3b7488a3273c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-10A TCGA-AN-A0AJ-10A-01W-A022-08 5a44cb25-a4ac-43a1-a608-0e109a27589a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-10A TCGA-AN-A0AJ-10A-01X-A025-09 b5a79ede-e53d-4e56-9a44-1fe7a463db7d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AJ TCGA-AN-A0AJ-10A TCGA-AN-A0AJ-10A-01X-A026-08 417b67b1-6334-43f9-a456-77446406efa5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AK TCGA-AN-A0AK-01A TCGA-AN-A0AK-01A-21D-A00Y-05 38ed8b8e-3052-42ef-a692-d52c9df502d2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AK TCGA-AN-A0AK-01A TCGA-AN-A0AK-01A-21D-A00Y-05 38ed8b8e-3052-42ef-a692-d52c9df502d2 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-AN-A0AK-01A-21D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-AN-A0AK TCGA-AN-A0AK-01A TCGA-AN-A0AK-01A-21D-A00Y-05 38ed8b8e-3052-42ef-a692-d52c9df502d2 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-AN-A0AK-01A-21D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-AN-A0AK TCGA-AN-A0AK-01A TCGA-AN-A0AK-01A-21D-A00Y-05 38ed8b8e-3052-42ef-a692-d52c9df502d2 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-AN-A0AK-01A-21D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-AN-A0AK TCGA-AN-A0AK-01A TCGA-AN-A0AK-01A-21D-A011-01 05afee4e-9acd-44f1-8a0c-ffa34d772b9c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AK TCGA-AN-A0AK-01A TCGA-AN-A0AK-01A-21D-A011-01 05afee4e-9acd-44f1-8a0c-ffa34d772b9c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B11_628594.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-AN-A0AK TCGA-AN-A0AK-01A TCGA-AN-A0AK-01A-21D-A011-01 05afee4e-9acd-44f1-8a0c-ffa34d772b9c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B11_628594.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AK TCGA-AN-A0AK-01A TCGA-AN-A0AK-01A-21D-A011-01 05afee4e-9acd-44f1-8a0c-ffa34d772b9c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B11_628594.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AK TCGA-AN-A0AK-01A TCGA-AN-A0AK-01A-21D-A011-01 05afee4e-9acd-44f1-8a0c-ffa34d772b9c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B11_628594.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AK TCGA-AN-A0AK-01A TCGA-AN-A0AK-01A-21D-A011-01 05afee4e-9acd-44f1-8a0c-ffa34d772b9c SNP Genome_Wide_SNP_6 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1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AK TCGA-AN-A0AK-01A TCGA-AN-A0AK-01A-21R-A00Z-07 5cf8f64b-a9f4-4903-9e24-5d0be19e5d44 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AK TCGA-AN-A0AK-01A TCGA-AN-A0AK-01A-21R-A00Z-07 5cf8f64b-a9f4-4903-9e24-5d0be19e5d44 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011868_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-AN-A0AK TCGA-AN-A0AK-01A TCGA-AN-A0AK-01A-21R-A00Z-07 5cf8f64b-a9f4-4903-9e24-5d0be19e5d44 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1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AK TCGA-AN-A0AK-01A TCGA-AN-A0AK-01A-21X-A024-08 f187d8f2-781f-448f-a67f-2d037b7bed08 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AK TCGA-AN-A0AK-10A TCGA-AN-A0AK-10A-01D-A012-01 45b73358-f011-4136-bceb-7506d050d8b6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AK TCGA-AN-A0AK-10A TCGA-AN-A0AK-10A-01D-A012-01 45b73358-f011-4136-bceb-7506d050d8b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A11_628590.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-AN-A0AK TCGA-AN-A0AK-10A TCGA-AN-A0AK-10A-01D-A012-01 45b73358-f011-4136-bceb-7506d050d8b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A11_628590.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AK TCGA-AN-A0AK-10A TCGA-AN-A0AK-10A-01D-A012-01 45b73358-f011-4136-bceb-7506d050d8b6 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A11_628590.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AK TCGA-AN-A0AK-10A TCGA-AN-A0AK-10A-01D-A012-01 45b73358-f011-4136-bceb-7506d050d8b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A11_628590.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AK TCGA-AN-A0AK-10A TCGA-AN-A0AK-10A-01D-A012-01 45b73358-f011-4136-bceb-7506d050d8b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A11_628590.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AK TCGA-AN-A0AK-10A TCGA-AN-A0AK-10A-01D-A012-01 45b73358-f011-4136-bceb-7506d050d8b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A11_628590.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-AN-A0AK TCGA-AN-A0AK-10A TCGA-AN-A0AK-10A-01D-A017-09 89bd10b5-cd08-4ba5-84e2-1d4c7d372c7c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AK TCGA-AN-A0AK-10A TCGA-AN-A0AK-10A-01D-A018-08 f7bf153d-6745-4254-bba6-2815b3d25ada Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AK TCGA-AN-A0AK-10A TCGA-AN-A0AK-10A-01D-A069-02 6a8252ef-5279-4993-a007-fcc532d1105f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AK TCGA-AN-A0AK-10A TCGA-AN-A0AK-10A-01W-A021-09 9243b0f3-5c29-4922-902c-8348cd53537c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AK TCGA-AN-A0AK-10A TCGA-AN-A0AK-10A-01W-A022-08 d644626b-d76d-45f3-bd44-99cc22c58094 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AK TCGA-AN-A0AK-10A TCGA-AN-A0AK-10A-01X-A025-09 5f19a973-76b0-4fa5-8937-c5a39cf180b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AK TCGA-AN-A0AK-10A TCGA-AN-A0AK-10A-01X-A026-08 21964756-8c8a-412b-a3b1-dd842675ae57 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11D-A00Y-05 f4f45386-67a1-4cad-8a8b-fa5e33fd20be Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11D-A00Y-05 f4f45386-67a1-4cad-8a8b-fa5e33fd20be DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-AN-A0AL-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11D-A00Y-05 f4f45386-67a1-4cad-8a8b-fa5e33fd20be DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-AN-A0AL-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11D-A00Y-05 f4f45386-67a1-4cad-8a8b-fa5e33fd20be DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-AN-A0AL-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11D-A011-01 7076a7b9-6f06-4660-9fd9-3cbcc66bafda Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11D-A011-01 7076a7b9-6f06-4660-9fd9-3cbcc66bafda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C12_628492.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11D-A011-01 7076a7b9-6f06-4660-9fd9-3cbcc66bafda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C12_628492.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11D-A011-01 7076a7b9-6f06-4660-9fd9-3cbcc66bafda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C12_628492.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11D-A011-01 7076a7b9-6f06-4660-9fd9-3cbcc66bafda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C12_628492.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11D-A011-01 7076a7b9-6f06-4660-9fd9-3cbcc66bafda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C12_628492.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11D-A011-01 7076a7b9-6f06-4660-9fd9-3cbcc66bafda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C12_628492.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11D-A011-01 7076a7b9-6f06-4660-9fd9-3cbcc66bafda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C12_628492.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11D-A011-01 7076a7b9-6f06-4660-9fd9-3cbcc66bafda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C12_628492.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11D-A015-09 43b475f0-539f-4def-afa1-4a443013ba66 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11D-A016-08 883b5f72-cd70-44a4-89c6-0b54d0395e19 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11D-A068-02 d38c5d63-d3a1-4e5d-a018-ba2730adf8ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11R-A00Z-07 467314d6-f946-447f-920a-d33b60f66eb2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11R-A00Z-07 467314d6-f946-447f-920a-d33b60f66eb2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011880_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11R-A00Z-07 467314d6-f946-447f-920a-d33b60f66eb2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.4.0.0/US82800149_251976011880_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.4.0.0 47 24-JAN-11 02.22.51.193000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11R-A00Z-07 467314d6-f946-447f-920a-d33b60f66eb2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011880_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11R-A00Z-07 467314d6-f946-447f-920a-d33b60f66eb2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.4.0.0/US82800149_251976011880_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.4.0.0 47 24-JAN-11 02.23.35.035000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11R-A00Z-07 467314d6-f946-447f-920a-d33b60f66eb2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011880_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11R-A00Z-07 467314d6-f946-447f-920a-d33b60f66eb2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.4.0.0/US82800149_251976011880_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.4.0.0 47 24-JAN-11 02.24.21.276000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11R-A00Z-07 467314d6-f946-447f-920a-d33b60f66eb2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_655485.TCGA-AN-A0AL-01A-11R-A00Z-07.110304_UNC12-SN629_0065_AB05PGABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11R-A00Z-07 467314d6-f946-447f-920a-d33b60f66eb2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_655491.TCGA-AN-A0AL-01A-11R-A00Z-07.110304_UNC12-SN629_0065_AB05PGABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11R-A00Z-07 467314d6-f946-447f-920a-d33b60f66eb2 RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0AL-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11R-A010-13 48e30486-fc07-409a-abd8-16faab49a527 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0AL-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11W-A019-09 47849ee3-b59e-4ccf-a261-65f7e252b885 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11W-A019-09 47849ee3-b59e-4ccf-a261-65f7e252b885 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11W-A020-08 254e1971-1e42-4a6f-a849-3878243a531d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11X-A023-09 985ca5b0-bd7a-4a70-b2e5-a3ac10dc4b19 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-01A TCGA-AN-A0AL-01A-11X-A024-08 111a8f20-4849-4690-a5da-edd8ba8a2f96 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-10A TCGA-AN-A0AL-10A-01D-A012-01 e43e1cc5-7607-4a63-93ea-abea6ca05062 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-10A TCGA-AN-A0AL-10A-01D-A012-01 e43e1cc5-7607-4a63-93ea-abea6ca05062 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D11_628538.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-AN-A0AL TCGA-AN-A0AL-10A TCGA-AN-A0AL-10A-01D-A012-01 e43e1cc5-7607-4a63-93ea-abea6ca05062 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D11_628538.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-10A TCGA-AN-A0AL-10A-01D-A012-01 e43e1cc5-7607-4a63-93ea-abea6ca05062 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D11_628538.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-10A TCGA-AN-A0AL-10A-01D-A012-01 e43e1cc5-7607-4a63-93ea-abea6ca05062 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D11_628538.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-10A TCGA-AN-A0AL-10A-01D-A012-01 e43e1cc5-7607-4a63-93ea-abea6ca05062 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D11_628538.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-10A TCGA-AN-A0AL-10A-01D-A012-01 e43e1cc5-7607-4a63-93ea-abea6ca05062 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D11_628538.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-10A TCGA-AN-A0AL-10A-01D-A012-01 e43e1cc5-7607-4a63-93ea-abea6ca05062 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D11_628538.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-10A TCGA-AN-A0AL-10A-01D-A012-01 e43e1cc5-7607-4a63-93ea-abea6ca05062 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D11_628538.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-10A TCGA-AN-A0AL-10A-01D-A017-09 625fa3d4-a73c-48b7-bd08-46dd92780cfc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-10A TCGA-AN-A0AL-10A-01D-A018-08 c3ac905a-6386-42d3-b153-6fb904f943ce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-10A TCGA-AN-A0AL-10A-01D-A069-02 204fcdf9-ccb0-4972-bf15-51245cc90c79 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-10A TCGA-AN-A0AL-10A-01W-A021-09 2f79e4ef-5112-4d70-8320-ca2148b47621 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-10A TCGA-AN-A0AL-10A-01W-A021-09 2f79e4ef-5112-4d70-8320-ca2148b47621 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-10A TCGA-AN-A0AL-10A-01W-A022-08 b4052979-dab6-4874-8cc7-dd9cea802c45 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-10A TCGA-AN-A0AL-10A-01X-A025-09 b868cd29-6439-45d9-9429-8ae3acadb206 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AL TCGA-AN-A0AL-10A TCGA-AN-A0AL-10A-01X-A026-08 9c6b4677-f500-41ae-8fd5-69b32c7d8963 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-01A TCGA-AN-A0AM-01A-11D-A032-05 2effa4e7-9a7f-4f3c-ac16-b82ee54e0dc3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-01A TCGA-AN-A0AM-01A-11D-A032-05 2effa4e7-9a7f-4f3c-ac16-b82ee54e0dc3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AN-A0AM-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-01A TCGA-AN-A0AM-01A-11D-A032-05 2effa4e7-9a7f-4f3c-ac16-b82ee54e0dc3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AN-A0AM-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-01A TCGA-AN-A0AM-01A-11D-A032-05 2effa4e7-9a7f-4f3c-ac16-b82ee54e0dc3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AN-A0AM-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-01A TCGA-AN-A0AM-01A-11D-A033-02 630544ef-b159-4551-b185-55679093e3a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-01A TCGA-AN-A0AM-01A-11D-A036-01 e444884d-d4ee-4ffb-a429-558fd4c1dd5a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-01A TCGA-AN-A0AM-01A-11D-A036-01 e444884d-d4ee-4ffb-a429-558fd4c1dd5a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G02_666960.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0AM TCGA-AN-A0AM-01A TCGA-AN-A0AM-01A-11D-A036-01 e444884d-d4ee-4ffb-a429-558fd4c1dd5a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G02_666960.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-01A TCGA-AN-A0AM-01A-11D-A036-01 e444884d-d4ee-4ffb-a429-558fd4c1dd5a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G02_666960.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-01A TCGA-AN-A0AM-01A-11D-A036-01 e444884d-d4ee-4ffb-a429-558fd4c1dd5a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G02_666960.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-01A TCGA-AN-A0AM-01A-11D-A036-01 e444884d-d4ee-4ffb-a429-558fd4c1dd5a SNP Genome_Wide_SNP_6 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1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-01A TCGA-AN-A0AM-01A-11R-A034-07 6050d8b9-2d10-4a03-ae57-979cba25bb70 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011900_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-AN-A0AM TCGA-AN-A0AM-01A TCGA-AN-A0AM-01A-11R-A034-07 6050d8b9-2d10-4a03-ae57-979cba25bb70 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011900_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-AN-A0AM TCGA-AN-A0AM-01A TCGA-AN-A0AM-01A-11R-A034-07 6050d8b9-2d10-4a03-ae57-979cba25bb70 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011900_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-AN-A0AM TCGA-AN-A0AM-01A TCGA-AN-A0AM-01A-11R-A034-07 6050d8b9-2d10-4a03-ae57-979cba25bb70 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_655973.TCGA-AN-A0AM-01A-11R-A034-07.110302_UNC11-SN627_0067_BB04EPABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-01A TCGA-AN-A0AM-01A-11R-A034-07 6050d8b9-2d10-4a03-ae57-979cba25bb70 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_656148.TCGA-AN-A0AM-01A-11R-A034-07.110302_UNC11-SN627_0067_BB04EPABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-01A TCGA-AN-A0AM-01A-11R-A034-07 6050d8b9-2d10-4a03-ae57-979cba25bb70 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_656757.TCGA-AN-A0AM-01A-11R-A034-07.110302_UNC11-SN627_0067_BB04EPABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-01A TCGA-AN-A0AM-01A-11R-A035-13 49d444ac-cc37-48fa-a72a-07c47ca027d1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-01A TCGA-AN-A0AM-01A-11R-A035-13 49d444ac-cc37-48fa-a72a-07c47ca027d1 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0AM-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-01A TCGA-AN-A0AM-01A-11R-A035-13 49d444ac-cc37-48fa-a72a-07c47ca027d1 miRNASeq IlluminaGA_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-01A TCGA-AN-A0AM-01A-11W-A051-08 d488eb51-9281-411b-b2b7-7f5bfc695b0f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-01A TCGA-AN-A0AM-01A-11X-A048-08 06323387-a283-449b-8abd-741bcd558edb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-01A TCGA-AN-A0AM-01A-11X-A049-09 177d5fe6-1c17-4402-81c0-fc499f6aba97 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-10A TCGA-AN-A0AM-10A-01D-A031-02 e47170bb-af47-414b-9103-73b49bee16c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-10A TCGA-AN-A0AM-10A-01D-A037-01 3c8a0870-4e46-47be-b5a6-3b65f1766968 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-10A TCGA-AN-A0AM-10A-01D-A037-01 3c8a0870-4e46-47be-b5a6-3b65f1766968 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A03_667036.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0AM TCGA-AN-A0AM-10A TCGA-AN-A0AM-10A-01D-A037-01 3c8a0870-4e46-47be-b5a6-3b65f1766968 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A03_667036.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-10A TCGA-AN-A0AM-10A-01D-A037-01 3c8a0870-4e46-47be-b5a6-3b65f1766968 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A03_667036.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-10A TCGA-AN-A0AM-10A-01D-A037-01 3c8a0870-4e46-47be-b5a6-3b65f1766968 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A03_667036.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-10A TCGA-AN-A0AM-10A-01D-A037-01 3c8a0870-4e46-47be-b5a6-3b65f1766968 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A03_667036.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-10A TCGA-AN-A0AM-10A-01D-A037-01 3c8a0870-4e46-47be-b5a6-3b65f1766968 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A03_667036.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-10A TCGA-AN-A0AM-10A-01D-A037-01 3c8a0870-4e46-47be-b5a6-3b65f1766968 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A03_667036.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-10A TCGA-AN-A0AM-10A-01D-A037-01 3c8a0870-4e46-47be-b5a6-3b65f1766968 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_A03_667036.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-10A TCGA-AN-A0AM-10A-01D-A046-08 7db3deb4-99e8-41b2-bad0-2a9cdc82517d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-10A TCGA-AN-A0AM-10A-01D-A047-09 46e3f2c5-75ab-43fb-9a2c-19b4381950a3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-10A TCGA-AN-A0AM-10A-01W-A053-08 ee958d0b-328b-40ca-9044-ffd21b59a640 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-10A TCGA-AN-A0AM-10A-01W-A055-09 d2910522-0610-4cef-a499-7bb1d7cb7c84 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-10A TCGA-AN-A0AM-10A-01W-A055-09 d2910522-0610-4cef-a499-7bb1d7cb7c84 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-10A TCGA-AN-A0AM-10A-01X-A052-08 a4026701-43bc-49f3-b5d3-2611b4a55b4e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AM TCGA-AN-A0AM-10A TCGA-AN-A0AM-10A-01X-A054-09 4e827709-ab8c-4924-a635-35e1a4f7a30d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11D-A00Y-05 d12d2fa0-3496-4070-8bb4-4cbc40ecce46 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11D-A00Y-05 d12d2fa0-3496-4070-8bb4-4cbc40ecce46 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-AN-A0AR-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11D-A00Y-05 d12d2fa0-3496-4070-8bb4-4cbc40ecce46 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-AN-A0AR-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11D-A00Y-05 d12d2fa0-3496-4070-8bb4-4cbc40ecce46 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-AN-A0AR-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11D-A011-01 f6743da4-ebb2-4223-ba29-2b1a0859181f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11D-A011-01 f6743da4-ebb2-4223-ba29-2b1a0859181f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F04_628438.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11D-A011-01 f6743da4-ebb2-4223-ba29-2b1a0859181f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F04_628438.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11D-A011-01 f6743da4-ebb2-4223-ba29-2b1a0859181f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F04_628438.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11D-A011-01 f6743da4-ebb2-4223-ba29-2b1a0859181f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F04_628438.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11D-A011-01 f6743da4-ebb2-4223-ba29-2b1a0859181f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F04_628438.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11D-A011-01 f6743da4-ebb2-4223-ba29-2b1a0859181f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F04_628438.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11D-A011-01 f6743da4-ebb2-4223-ba29-2b1a0859181f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F04_628438.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11D-A011-01 f6743da4-ebb2-4223-ba29-2b1a0859181f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F04_628438.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11D-A015-09 f000867c-7aa8-4f66-ae9d-d2a4532f6ddd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11D-A016-08 5baa9df2-ee0c-4b09-a439-982dfc7b2ec3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11D-A068-02 0a385677-7005-48c7-ab1a-4b1c41b87996 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11R-A00Z-07 12c36b7c-f302-4cea-bb4f-5a01211e00e9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11R-A00Z-07 12c36b7c-f302-4cea-bb4f-5a01211e00e9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011823_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11R-A00Z-07 12c36b7c-f302-4cea-bb4f-5a01211e00e9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011823_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11R-A00Z-07 12c36b7c-f302-4cea-bb4f-5a01211e00e9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011823_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11R-A010-13 cbc4efce-88d3-45aa-a4b9-9a7f265419bd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11R-A010-13 cbc4efce-88d3-45aa-a4b9-9a7f265419bd miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0AR-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11R-A010-13 cbc4efce-88d3-45aa-a4b9-9a7f265419bd miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0AR-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11W-A019-09 a2d77acd-89db-4d2d-89d7-d1cc58cf576b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11W-A019-09 a2d77acd-89db-4d2d-89d7-d1cc58cf576b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 47 22-JUL-11 04.53.19.115000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11W-A019-09 a2d77acd-89db-4d2d-89d7-d1cc58cf576b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11W-A020-08 bc729277-a48d-4f83-83f8-b0d83a824ccb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11X-A023-09 42d1cf7a-6286-4aa5-a67d-82ab81b00e23 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-01A TCGA-AN-A0AR-01A-11X-A024-08 375c247f-265e-46cf-83d2-6d4592735aaa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-10A TCGA-AN-A0AR-10A-01D-A012-01 6cb3fd08-5c6b-4a9f-ad48-53e745f990ab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-10A TCGA-AN-A0AR-10A-01D-A012-01 6cb3fd08-5c6b-4a9f-ad48-53e745f990ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A10_628572.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-AN-A0AR TCGA-AN-A0AR-10A TCGA-AN-A0AR-10A-01D-A012-01 6cb3fd08-5c6b-4a9f-ad48-53e745f990ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A10_628572.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-10A TCGA-AN-A0AR-10A-01D-A012-01 6cb3fd08-5c6b-4a9f-ad48-53e745f990ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A10_628572.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-10A TCGA-AN-A0AR-10A-01D-A012-01 6cb3fd08-5c6b-4a9f-ad48-53e745f990ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A10_628572.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-10A TCGA-AN-A0AR-10A-01D-A012-01 6cb3fd08-5c6b-4a9f-ad48-53e745f990ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A10_628572.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-10A TCGA-AN-A0AR-10A-01D-A012-01 6cb3fd08-5c6b-4a9f-ad48-53e745f990ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A10_628572.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-10A TCGA-AN-A0AR-10A-01D-A012-01 6cb3fd08-5c6b-4a9f-ad48-53e745f990ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A10_628572.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-10A TCGA-AN-A0AR-10A-01D-A012-01 6cb3fd08-5c6b-4a9f-ad48-53e745f990ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A10_628572.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-10A TCGA-AN-A0AR-10A-01D-A017-09 1848403e-8256-437c-a753-3040e0f4baeb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-10A TCGA-AN-A0AR-10A-01D-A018-08 0e78ae3c-0bc8-4a95-bfa0-4986c9e4fc42 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-10A TCGA-AN-A0AR-10A-01D-A069-02 3e6e895a-8e3f-4473-b432-68464e48dfe0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-10A TCGA-AN-A0AR-10A-01W-A021-09 75042bcc-6363-44b2-97bd-c51d3789ce67 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-10A TCGA-AN-A0AR-10A-01W-A021-09 75042bcc-6363-44b2-97bd-c51d3789ce67 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 47 22-JUL-11 04.53.19.115000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-10A TCGA-AN-A0AR-10A-01W-A021-09 75042bcc-6363-44b2-97bd-c51d3789ce67 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-10A TCGA-AN-A0AR-10A-01W-A022-08 ff3722e9-332d-4adf-901a-7438d1f7be36 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-10A TCGA-AN-A0AR-10A-01X-A025-09 542d1581-e502-4da4-b5b2-343319a203d1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AR TCGA-AN-A0AR-10A TCGA-AN-A0AR-10A-01X-A026-08 1f286b54-8dd3-430c-9adf-3a6eadb94313 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11D-A00Y-05 570e8a40-5596-482b-b36c-740aab84db8e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11D-A00Y-05 570e8a40-5596-482b-b36c-740aab84db8e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-AN-A0AS-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11D-A00Y-05 570e8a40-5596-482b-b36c-740aab84db8e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-AN-A0AS-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11D-A00Y-05 570e8a40-5596-482b-b36c-740aab84db8e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-AN-A0AS-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11D-A011-01 47150649-c6a6-48fc-a65c-bc621cbaec41 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11D-A011-01 47150649-c6a6-48fc-a65c-bc621cbaec41 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G05_628446.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11D-A011-01 47150649-c6a6-48fc-a65c-bc621cbaec41 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G05_628446.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11D-A011-01 47150649-c6a6-48fc-a65c-bc621cbaec41 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G05_628446.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11D-A011-01 47150649-c6a6-48fc-a65c-bc621cbaec41 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G05_628446.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11D-A011-01 47150649-c6a6-48fc-a65c-bc621cbaec41 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G05_628446.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11D-A011-01 47150649-c6a6-48fc-a65c-bc621cbaec41 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G05_628446.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11D-A011-01 47150649-c6a6-48fc-a65c-bc621cbaec41 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G05_628446.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11D-A011-01 47150649-c6a6-48fc-a65c-bc621cbaec41 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G05_628446.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11D-A015-09 b27cacea-4a32-4052-8253-dddc435622c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11D-A016-08 028caa59-49aa-4305-8b0a-9fe133c9ffcf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11R-A00Z-07 e866475d-4919-4bf6-920e-5390720d15bf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11R-A00Z-07 e866475d-4919-4bf6-920e-5390720d15bf Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011825_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11R-A00Z-07 e866475d-4919-4bf6-920e-5390720d15bf Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011825_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11R-A00Z-07 e866475d-4919-4bf6-920e-5390720d15bf Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011825_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11R-A010-13 eea4186b-7623-4b2b-bd49-2761d2c71daf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11R-A010-13 eea4186b-7623-4b2b-bd49-2761d2c71daf miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0AS-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11R-A010-13 eea4186b-7623-4b2b-bd49-2761d2c71daf miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0AS-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11W-A019-09 2257c942-1274-47e7-86ad-b92ecfafc205 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11W-A019-09 2257c942-1274-47e7-86ad-b92ecfafc205 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11W-A020-08 145c4f44-3129-40fb-8ab0-a631a4a1bead Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11X-A023-09 4af9c795-8790-41ae-8089-b63b26f44510 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-01A TCGA-AN-A0AS-01A-11X-A024-08 0921e517-6bad-48e8-a4f8-501731c81e8a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-10A TCGA-AN-A0AS-10A-01D-A012-01 89227386-dc8a-4ba4-9a01-2485a7052bf6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-10A TCGA-AN-A0AS-10A-01D-A012-01 89227386-dc8a-4ba4-9a01-2485a7052bf6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B10_628566.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-AN-A0AS TCGA-AN-A0AS-10A TCGA-AN-A0AS-10A-01D-A012-01 89227386-dc8a-4ba4-9a01-2485a7052bf6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B10_628566.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-10A TCGA-AN-A0AS-10A-01D-A012-01 89227386-dc8a-4ba4-9a01-2485a7052bf6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B10_628566.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-10A TCGA-AN-A0AS-10A-01D-A012-01 89227386-dc8a-4ba4-9a01-2485a7052bf6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B10_628566.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-10A TCGA-AN-A0AS-10A-01D-A012-01 89227386-dc8a-4ba4-9a01-2485a7052bf6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B10_628566.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-10A TCGA-AN-A0AS-10A-01D-A012-01 89227386-dc8a-4ba4-9a01-2485a7052bf6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B10_628566.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-10A TCGA-AN-A0AS-10A-01D-A012-01 89227386-dc8a-4ba4-9a01-2485a7052bf6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B10_628566.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-10A TCGA-AN-A0AS-10A-01D-A012-01 89227386-dc8a-4ba4-9a01-2485a7052bf6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B10_628566.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-10A TCGA-AN-A0AS-10A-01D-A017-09 8bc75769-b095-4c5d-a3fa-2579693de217 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-10A TCGA-AN-A0AS-10A-01D-A018-08 7dabbc18-ddbd-4cae-85f8-f9fd45a6f2bb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-10A TCGA-AN-A0AS-10A-01W-A021-09 0ec33f45-45dc-4fd6-b1c9-0312bff04da4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-10A TCGA-AN-A0AS-10A-01W-A021-09 0ec33f45-45dc-4fd6-b1c9-0312bff04da4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-10A TCGA-AN-A0AS-10A-01W-A022-08 7e1fd0f8-d8a3-430a-a054-ac9cd1b2f0fe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-10A TCGA-AN-A0AS-10A-01X-A025-09 ab47ddda-b954-4a28-926a-d8a500e9ce9d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AS TCGA-AN-A0AS-10A TCGA-AN-A0AS-10A-01X-A026-08 e91d4f74-4cd3-4e93-9759-c3f9808b6aeb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11D-A032-05 bcbb8a42-bda7-4608-aeb6-e08c96863e9b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11D-A032-05 bcbb8a42-bda7-4608-aeb6-e08c96863e9b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AN-A0AT-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11D-A032-05 bcbb8a42-bda7-4608-aeb6-e08c96863e9b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AN-A0AT-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11D-A032-05 bcbb8a42-bda7-4608-aeb6-e08c96863e9b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AN-A0AT-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11D-A033-02 c070207d-6dfc-4b83-bf6d-4c6f76231f34 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11D-A036-01 170030ae-72f3-46cc-b82a-d23c7f3ad70d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11D-A036-01 170030ae-72f3-46cc-b82a-d23c7f3ad70d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F03_667012.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11D-A036-01 170030ae-72f3-46cc-b82a-d23c7f3ad70d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F03_667012.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11D-A036-01 170030ae-72f3-46cc-b82a-d23c7f3ad70d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F03_667012.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11D-A036-01 170030ae-72f3-46cc-b82a-d23c7f3ad70d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F03_667012.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11D-A036-01 170030ae-72f3-46cc-b82a-d23c7f3ad70d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F03_667012.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11D-A036-01 170030ae-72f3-46cc-b82a-d23c7f3ad70d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F03_667012.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11D-A036-01 170030ae-72f3-46cc-b82a-d23c7f3ad70d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F03_667012.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11D-A036-01 170030ae-72f3-46cc-b82a-d23c7f3ad70d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F03_667012.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11D-A044-08 b554f743-9466-4e27-9f77-189b320de264 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11D-A045-09 f848b66f-bd9e-4fba-afd4-eb58848d1ef4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11D-A045-09 f848b66f-bd9e-4fba-afd4-eb58848d1ef4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11R-A034-07 edda9023-a8d9-45dc-af21-5bba663967e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11R-A034-07 edda9023-a8d9-45dc-af21-5bba663967e4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011901_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11R-A034-07 edda9023-a8d9-45dc-af21-5bba663967e4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011901_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11R-A034-07 edda9023-a8d9-45dc-af21-5bba663967e4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011901_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11R-A034-07 edda9023-a8d9-45dc-af21-5bba663967e4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_655967.TCGA-AN-A0AT-01A-11R-A034-07.110302_UNC11-SN627_0067_BB04EPABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11R-A034-07 edda9023-a8d9-45dc-af21-5bba663967e4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_655991.TCGA-AN-A0AT-01A-11R-A034-07.110302_UNC11-SN627_0067_BB04EPABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11R-A034-07 edda9023-a8d9-45dc-af21-5bba663967e4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_656321.TCGA-AN-A0AT-01A-11R-A034-07.110302_UNC11-SN627_0067_BB04EPABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11R-A035-13 1c732dac-1cba-4c50-a312-b8775ac5c1a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11W-A050-09 b4eecc26-be1d-40d2-86b9-ee53951a0072 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11W-A051-08 6d60a545-6fb6-402a-8d45-5cae444a384a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11X-A048-08 6848d01d-49f8-4e87-8c75-c8432ab1994d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-01A TCGA-AN-A0AT-01A-11X-A049-09 b3a745e6-d137-4c97-a82b-682d1c2aa460 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-10A TCGA-AN-A0AT-10A-01D-A031-02 ae14c495-6151-493f-8293-8093d84e5299 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-10A TCGA-AN-A0AT-10A-01D-A037-01 9c408a51-3452-4a10-b15d-649ddba37653 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-10A TCGA-AN-A0AT-10A-01D-A037-01 9c408a51-3452-4a10-b15d-649ddba37653 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B04_666870.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0AT TCGA-AN-A0AT-10A TCGA-AN-A0AT-10A-01D-A037-01 9c408a51-3452-4a10-b15d-649ddba37653 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B04_666870.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-10A TCGA-AN-A0AT-10A-01D-A037-01 9c408a51-3452-4a10-b15d-649ddba37653 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B04_666870.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-10A TCGA-AN-A0AT-10A-01D-A037-01 9c408a51-3452-4a10-b15d-649ddba37653 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B04_666870.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-10A TCGA-AN-A0AT-10A-01D-A037-01 9c408a51-3452-4a10-b15d-649ddba37653 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B04_666870.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-10A TCGA-AN-A0AT-10A-01D-A037-01 9c408a51-3452-4a10-b15d-649ddba37653 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B04_666870.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-10A TCGA-AN-A0AT-10A-01D-A037-01 9c408a51-3452-4a10-b15d-649ddba37653 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B04_666870.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-10A TCGA-AN-A0AT-10A-01D-A037-01 9c408a51-3452-4a10-b15d-649ddba37653 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_B04_666870.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-10A TCGA-AN-A0AT-10A-01D-A046-08 77c5bae5-d33a-4308-a4c1-51cd675a343a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-10A TCGA-AN-A0AT-10A-01D-A047-09 591a3934-0614-4c7e-8cd5-b7785b709bad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-10A TCGA-AN-A0AT-10A-01W-A053-08 b213f392-aff2-46b3-9732-9b59e18b0509 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-10A TCGA-AN-A0AT-10A-01W-A055-09 1dab1c73-daeb-4900-9fa1-61656237024a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-10A TCGA-AN-A0AT-10A-01W-A055-09 1dab1c73-daeb-4900-9fa1-61656237024a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-10A TCGA-AN-A0AT-10A-01X-A052-08 52eb3646-cf70-4bf8-b6da-1809ec142714 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0AT TCGA-AN-A0AT-10A TCGA-AN-A0AT-10A-01X-A054-09 40b452af-036b-4b11-8fb6-16c97e7496f5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11D-A032-05 998797b2-5f1d-42a1-a647-31d8ebe5ee0d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11D-A032-05 998797b2-5f1d-42a1-a647-31d8ebe5ee0d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AN-A0FD-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11D-A032-05 998797b2-5f1d-42a1-a647-31d8ebe5ee0d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AN-A0FD-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11D-A032-05 998797b2-5f1d-42a1-a647-31d8ebe5ee0d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AN-A0FD-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11D-A033-02 ba9b1d3d-6272-4aa4-ab97-4bc3a0dd5402 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11D-A036-01 ba8ff683-777a-4d41-9261-014c89e17791 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11D-A036-01 ba8ff683-777a-4d41-9261-014c89e17791 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H10_667054.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11D-A036-01 ba8ff683-777a-4d41-9261-014c89e17791 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H10_667054.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11D-A036-01 ba8ff683-777a-4d41-9261-014c89e17791 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H10_667054.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11D-A036-01 ba8ff683-777a-4d41-9261-014c89e17791 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H10_667054.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11D-A036-01 ba8ff683-777a-4d41-9261-014c89e17791 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H10_667054.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11D-A036-01 ba8ff683-777a-4d41-9261-014c89e17791 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H10_667054.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11D-A036-01 ba8ff683-777a-4d41-9261-014c89e17791 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H10_667054.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11D-A036-01 ba8ff683-777a-4d41-9261-014c89e17791 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H10_667054.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11D-A044-08 b5e32e96-2b24-4b63-8843-6c7035caeac3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11D-A045-09 798ff996-92db-4659-98a2-1d89cd82c4f2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11R-A034-07 3264f809-4bbf-48e6-bbfd-77eaca9e602e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11R-A034-07 3264f809-4bbf-48e6-bbfd-77eaca9e602e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012112_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11R-A034-07 3264f809-4bbf-48e6-bbfd-77eaca9e602e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012112_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11R-A034-07 3264f809-4bbf-48e6-bbfd-77eaca9e602e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012112_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11R-A034-07 3264f809-4bbf-48e6-bbfd-77eaca9e602e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_471683.TCGA-AN-A0FD-01A-11R-A034-07.110427_UNC15-SN850_0064_AB066WABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11R-A034-07 3264f809-4bbf-48e6-bbfd-77eaca9e602e RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0FD-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11W-A050-09 abae6f4c-2378-4fbd-adea-f739e6629b22 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11W-A050-09 abae6f4c-2378-4fbd-adea-f739e6629b22 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11W-A051-08 161f69c4-dc3f-4eca-bd67-247d07569681 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11X-A048-08 a98e464c-3e1a-4a0b-bfbd-c1af3035f271 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-01A TCGA-AN-A0FD-01A-11X-A049-09 ae7205ea-d5af-457a-a1f8-bc0b8f9de4a3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-10A TCGA-AN-A0FD-10A-01D-A031-02 86d47a3b-bc36-4274-83c8-b0e1442a5902 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-10A TCGA-AN-A0FD-10A-01D-A037-01 4808b284-df16-49cc-ab57-274fa84e13f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-10A TCGA-AN-A0FD-10A-01D-A037-01 4808b284-df16-49cc-ab57-274fa84e13f4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G07_666954.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0FD TCGA-AN-A0FD-10A TCGA-AN-A0FD-10A-01D-A037-01 4808b284-df16-49cc-ab57-274fa84e13f4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G07_666954.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-10A TCGA-AN-A0FD-10A-01D-A037-01 4808b284-df16-49cc-ab57-274fa84e13f4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G07_666954.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-10A TCGA-AN-A0FD-10A-01D-A037-01 4808b284-df16-49cc-ab57-274fa84e13f4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G07_666954.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-10A TCGA-AN-A0FD-10A-01D-A037-01 4808b284-df16-49cc-ab57-274fa84e13f4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G07_666954.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-10A TCGA-AN-A0FD-10A-01D-A037-01 4808b284-df16-49cc-ab57-274fa84e13f4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G07_666954.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-10A TCGA-AN-A0FD-10A-01D-A037-01 4808b284-df16-49cc-ab57-274fa84e13f4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G07_666954.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-10A TCGA-AN-A0FD-10A-01D-A037-01 4808b284-df16-49cc-ab57-274fa84e13f4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_G07_666954.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-10A TCGA-AN-A0FD-10A-01D-A046-08 6923a3fc-196a-452d-8913-e18f7c4f1d0c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-10A TCGA-AN-A0FD-10A-01D-A047-09 c8efc951-5f6e-423d-ab2b-87d9f8b8bf8b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-10A TCGA-AN-A0FD-10A-01W-A053-08 d1ff4f41-638e-45d9-9b34-562b7c5b9580 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-10A TCGA-AN-A0FD-10A-01W-A055-09 9ac897b6-9cc0-47f6-ae50-b286c8ead24c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-10A TCGA-AN-A0FD-10A-01W-A055-09 9ac897b6-9cc0-47f6-ae50-b286c8ead24c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-10A TCGA-AN-A0FD-10A-01X-A052-08 a36af27a-9266-4a89-976e-7548259f504d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FD TCGA-AN-A0FD-10A TCGA-AN-A0FD-10A-01X-A054-09 6d15a85c-7e7c-4373-b17a-7bc57f6b736b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FE TCGA-AN-A0FE-01A TCGA-AN-A0FE-01A-11D-A00Y-05 a19eecfe-f4c3-40f8-9881-6b5742539893 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-01A TCGA-AN-A0FE-01A-11D-A00Y-05 a19eecfe-f4c3-40f8-9881-6b5742539893 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-AN-A0FE-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-01A TCGA-AN-A0FE-01A-11D-A00Y-05 a19eecfe-f4c3-40f8-9881-6b5742539893 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-AN-A0FE-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-01A TCGA-AN-A0FE-01A-11D-A00Y-05 a19eecfe-f4c3-40f8-9881-6b5742539893 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-AN-A0FE-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-01A TCGA-AN-A0FE-01A-11D-A011-01 97bf6a26-512f-493e-b7fe-53d309f1159a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-01A TCGA-AN-A0FE-01A-11D-A011-01 97bf6a26-512f-493e-b7fe-53d309f1159a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B07_628420.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-01A TCGA-AN-A0FE-01A-11D-A011-01 97bf6a26-512f-493e-b7fe-53d309f1159a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B07_628420.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-01A TCGA-AN-A0FE-01A-11D-A011-01 97bf6a26-512f-493e-b7fe-53d309f1159a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B07_628420.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-01A TCGA-AN-A0FE-01A-11D-A011-01 97bf6a26-512f-493e-b7fe-53d309f1159a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B07_628420.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-01A TCGA-AN-A0FE-01A-11D-A011-01 97bf6a26-512f-493e-b7fe-53d309f1159a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B07_628420.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-01A TCGA-AN-A0FE-01A-11D-A011-01 97bf6a26-512f-493e-b7fe-53d309f1159a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B07_628420.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-01A TCGA-AN-A0FE-01A-11D-A011-01 97bf6a26-512f-493e-b7fe-53d309f1159a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B07_628420.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-01A TCGA-AN-A0FE-01A-11D-A011-01 97bf6a26-512f-493e-b7fe-53d309f1159a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B07_628420.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-01A TCGA-AN-A0FE-01A-11D-A015-09 12263eed-d1f6-4898-8183-ce05b9bac798 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-01A TCGA-AN-A0FE-01A-11D-A016-08 b96e2e57-0d4a-47b2-9170-fe1e4d658d9e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-01A TCGA-AN-A0FE-01A-11R-A00Z-07 1e6ca8c0-d6c6-488f-8ff5-3a139e56145b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-01A TCGA-AN-A0FE-01A-11R-A00Z-07 1e6ca8c0-d6c6-488f-8ff5-3a139e56145b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011845_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-01A TCGA-AN-A0FE-01A-11R-A00Z-07 1e6ca8c0-d6c6-488f-8ff5-3a139e56145b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011845_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-01A TCGA-AN-A0FE-01A-11R-A00Z-07 1e6ca8c0-d6c6-488f-8ff5-3a139e56145b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011845_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-01A TCGA-AN-A0FE-01A-11R-A010-13 a8102be7-181e-4797-9e6e-83320544c4a8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-01A TCGA-AN-A0FE-01A-11W-A019-09 9a1b3ce2-9512-4eac-a721-efa9d880ef25 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-01A TCGA-AN-A0FE-01A-11W-A020-08 48fc6b0f-6fba-4a9a-8b04-edb66ec81926 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-01A TCGA-AN-A0FE-01A-11X-A023-09 146ad9f9-c174-44af-b0fa-ddafb0e11909 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-01A TCGA-AN-A0FE-01A-11X-A024-08 5fb7797e-95ca-4ce5-8ce8-60734062431a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-10A TCGA-AN-A0FE-10A-01D-A012-01 0a013412-4929-4c11-a37a-643ef86c9c31 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-10A TCGA-AN-A0FE-10A-01D-A012-01 0a013412-4929-4c11-a37a-643ef86c9c31 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D05_628548.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-10A TCGA-AN-A0FE-10A-01D-A012-01 0a013412-4929-4c11-a37a-643ef86c9c31 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D05_628548.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-10A TCGA-AN-A0FE-10A-01D-A012-01 0a013412-4929-4c11-a37a-643ef86c9c31 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D05_628548.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-10A TCGA-AN-A0FE-10A-01D-A012-01 0a013412-4929-4c11-a37a-643ef86c9c31 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D05_628548.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-10A TCGA-AN-A0FE-10A-01D-A012-01 0a013412-4929-4c11-a37a-643ef86c9c31 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D05_628548.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-10A TCGA-AN-A0FE-10A-01D-A012-01 0a013412-4929-4c11-a37a-643ef86c9c31 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D05_628548.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-10A TCGA-AN-A0FE-10A-01D-A012-01 0a013412-4929-4c11-a37a-643ef86c9c31 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D05_628548.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-10A TCGA-AN-A0FE-10A-01D-A012-01 0a013412-4929-4c11-a37a-643ef86c9c31 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D05_628548.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-10A TCGA-AN-A0FE-10A-01D-A017-09 83345bb0-bbf0-4373-933c-ca4ef55020da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-10A TCGA-AN-A0FE-10A-01D-A018-08 5191cf73-f8a2-4574-8563-48ca3967f2b6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-10A TCGA-AN-A0FE-10A-01W-A021-09 672c0ef4-702d-43c0-8150-1fd29b075896 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-10A TCGA-AN-A0FE-10A-01W-A022-08 63c1d637-445a-4522-a1c4-030d0ff7f7b3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-10A TCGA-AN-A0FE-10A-01X-A025-09 af3d8d45-314e-4b5e-bffd-31d2e9caf353 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FE TCGA-AN-A0FE-10A TCGA-AN-A0FE-10A-01X-A026-08 12d37ba2-16dc-45c1-91e9-e3bad424f286 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FG TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11D-A032-05 5951cc52-894a-4e80-8286-7d559002f41c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11D-A032-05 5951cc52-894a-4e80-8286-7d559002f41c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AN-A0FF-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11D-A032-05 5951cc52-894a-4e80-8286-7d559002f41c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AN-A0FF-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11D-A032-05 5951cc52-894a-4e80-8286-7d559002f41c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AN-A0FF-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11D-A033-02 9d187fae-ce3e-4a00-b325-f1fedab7e9fb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11D-A036-01 9add77c5-e24a-4c2f-9e79-fa09dc8697cd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11D-A036-01 9add77c5-e24a-4c2f-9e79-fa09dc8697cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E01_666966.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11D-A036-01 9add77c5-e24a-4c2f-9e79-fa09dc8697cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E01_666966.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11D-A036-01 9add77c5-e24a-4c2f-9e79-fa09dc8697cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E01_666966.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11D-A036-01 9add77c5-e24a-4c2f-9e79-fa09dc8697cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E01_666966.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11D-A036-01 9add77c5-e24a-4c2f-9e79-fa09dc8697cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E01_666966.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11D-A036-01 9add77c5-e24a-4c2f-9e79-fa09dc8697cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E01_666966.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11D-A036-01 9add77c5-e24a-4c2f-9e79-fa09dc8697cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E01_666966.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11D-A036-01 9add77c5-e24a-4c2f-9e79-fa09dc8697cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_E01_666966.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11D-A044-08 17a2c720-d9ab-4d44-b33a-9f542a6b2043 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11D-A045-09 cabbc9e4-ed49-451e-9d2f-d60fae933931 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11R-A034-07 7a5bc56e-e787-4798-8c4d-ee792f9e3149 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11R-A034-07 7a5bc56e-e787-4798-8c4d-ee792f9e3149 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012113_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11R-A034-07 7a5bc56e-e787-4798-8c4d-ee792f9e3149 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012113_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11R-A034-07 7a5bc56e-e787-4798-8c4d-ee792f9e3149 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012113_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11R-A034-07 7a5bc56e-e787-4798-8c4d-ee792f9e3149 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_471703.TCGA-AN-A0FF-01A-11R-A034-07.110427_UNC15-SN850_0064_AB066WABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11R-A034-07 7a5bc56e-e787-4798-8c4d-ee792f9e3149 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_471882.TCGA-AN-A0FF-01A-11R-A034-07.110427_UNC15-SN850_0064_AB066WABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11R-A034-07 7a5bc56e-e787-4798-8c4d-ee792f9e3149 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_472361.TCGA-AN-A0FF-01A-11R-A034-07.110427_UNC15-SN850_0064_AB066WABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11R-A035-13 706b2f59-33a0-422d-bd42-d3cd513cbd7d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11R-A035-13 706b2f59-33a0-422d-bd42-d3cd513cbd7d miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0FF-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11R-A035-13 706b2f59-33a0-422d-bd42-d3cd513cbd7d miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0FF-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11W-A050-09 cd45e46c-50bf-449e-bb40-29ccffbbd49c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11W-A050-09 cd45e46c-50bf-449e-bb40-29ccffbbd49c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11W-A051-08 d1820310-8cb9-4202-9287-5a9a73e34026 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11X-A048-08 ed4eb65e-6016-4c62-919c-a22300aa0851 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-01A TCGA-AN-A0FF-01A-11X-A049-09 88cfcdf0-59cb-460e-b1e3-9aecd1672083 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-10A TCGA-AN-A0FF-10A-01D-A031-02 697dedbf-044e-4131-8e57-8b9a79e64cb9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-10A TCGA-AN-A0FF-10A-01D-A037-01 2372b38f-69d0-416c-9841-93b764529626 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-10A TCGA-AN-A0FF-10A-01D-A037-01 2372b38f-69d0-416c-9841-93b764529626 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H09_666874.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0FF TCGA-AN-A0FF-10A TCGA-AN-A0FF-10A-01D-A037-01 2372b38f-69d0-416c-9841-93b764529626 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H09_666874.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-10A TCGA-AN-A0FF-10A-01D-A037-01 2372b38f-69d0-416c-9841-93b764529626 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H09_666874.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-10A TCGA-AN-A0FF-10A-01D-A037-01 2372b38f-69d0-416c-9841-93b764529626 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H09_666874.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-10A TCGA-AN-A0FF-10A-01D-A037-01 2372b38f-69d0-416c-9841-93b764529626 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H09_666874.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-10A TCGA-AN-A0FF-10A-01D-A037-01 2372b38f-69d0-416c-9841-93b764529626 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H09_666874.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-10A TCGA-AN-A0FF-10A-01D-A037-01 2372b38f-69d0-416c-9841-93b764529626 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H09_666874.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-10A TCGA-AN-A0FF-10A-01D-A037-01 2372b38f-69d0-416c-9841-93b764529626 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_H09_666874.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-10A TCGA-AN-A0FF-10A-01D-A046-08 381008f3-9d7d-41e1-97a7-acff405191e5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-10A TCGA-AN-A0FF-10A-01D-A047-09 1aee07ce-70f1-4f64-947f-e9a15a7a9758 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-10A TCGA-AN-A0FF-10A-01W-A053-08 68102266-4188-4593-8bab-a14773f7fc09 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-10A TCGA-AN-A0FF-10A-01W-A055-09 51960d24-2753-46e9-ab1d-e1b41c0ad0c5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-10A TCGA-AN-A0FF-10A-01W-A055-09 51960d24-2753-46e9-ab1d-e1b41c0ad0c5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-10A TCGA-AN-A0FF-10A-01X-A052-08 0443da8f-ae84-43f2-a437-93fb7472d89a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FF TCGA-AN-A0FF-10A TCGA-AN-A0FF-10A-01X-A054-09 c3254ca9-48a5-4d63-8428-f3d8311632ff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11D-A00Y-05 9f78cd53-41ed-439d-94fa-d2bedb2d9cc5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11D-A00Y-05 9f78cd53-41ed-439d-94fa-d2bedb2d9cc5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-AN-A0FG-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11D-A00Y-05 9f78cd53-41ed-439d-94fa-d2bedb2d9cc5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-AN-A0FG-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11D-A00Y-05 9f78cd53-41ed-439d-94fa-d2bedb2d9cc5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-AN-A0FG-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11D-A011-01 0e82163d-bfb2-4b39-9f36-4672b12040ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11D-A011-01 0e82163d-bfb2-4b39-9f36-4672b12040ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B06_628462.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11D-A011-01 0e82163d-bfb2-4b39-9f36-4672b12040ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B06_628462.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11D-A011-01 0e82163d-bfb2-4b39-9f36-4672b12040ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B06_628462.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11D-A011-01 0e82163d-bfb2-4b39-9f36-4672b12040ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B06_628462.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11D-A011-01 0e82163d-bfb2-4b39-9f36-4672b12040ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B06_628462.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11D-A011-01 0e82163d-bfb2-4b39-9f36-4672b12040ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B06_628462.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11D-A011-01 0e82163d-bfb2-4b39-9f36-4672b12040ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B06_628462.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11D-A011-01 0e82163d-bfb2-4b39-9f36-4672b12040ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B06_628462.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11D-A015-09 f307e29f-84b2-4ee1-8fe1-c8f59c52d2a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11D-A016-08 df1c0930-c974-411c-8cff-3a2eeaa375a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11D-A068-02 2891c329-d50b-44f8-89ef-7cd07eaec949 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11R-A00Z-07 f0fe87e3-386e-422c-ac5c-ef908110af70 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11R-A00Z-07 f0fe87e3-386e-422c-ac5c-ef908110af70 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011858_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11R-A00Z-07 f0fe87e3-386e-422c-ac5c-ef908110af70 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011858_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11R-A00Z-07 f0fe87e3-386e-422c-ac5c-ef908110af70 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011858_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11R-A010-13 d623de98-4f22-46ca-8daa-c51615d989a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11R-A010-13 d623de98-4f22-46ca-8daa-c51615d989a1 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0FG-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11R-A010-13 d623de98-4f22-46ca-8daa-c51615d989a1 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0FG-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11W-A019-09 44c02949-4389-48e5-8521-6f32bdae152a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11W-A020-08 16957831-735e-47dd-9efd-3de7a89d76ee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11X-A023-09 ff32bc13-d6d8-4455-932f-d022f3b69b5f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-01A TCGA-AN-A0FG-01A-11X-A024-08 25e3f8fc-460b-4426-96eb-70c4f3a96f22 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-10A TCGA-AN-A0FG-10A-01D-A012-01 4c81cb06-2c3f-464e-bc22-240802b85031 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-10A TCGA-AN-A0FG-10A-01D-A012-01 4c81cb06-2c3f-464e-bc22-240802b85031 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D12_628556.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-10A TCGA-AN-A0FG-10A-01D-A012-01 4c81cb06-2c3f-464e-bc22-240802b85031 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D12_628556.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-10A TCGA-AN-A0FG-10A-01D-A012-01 4c81cb06-2c3f-464e-bc22-240802b85031 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D12_628556.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-10A TCGA-AN-A0FG-10A-01D-A012-01 4c81cb06-2c3f-464e-bc22-240802b85031 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D12_628556.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-10A TCGA-AN-A0FG-10A-01D-A012-01 4c81cb06-2c3f-464e-bc22-240802b85031 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D12_628556.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-10A TCGA-AN-A0FG-10A-01D-A012-01 4c81cb06-2c3f-464e-bc22-240802b85031 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D12_628556.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-10A TCGA-AN-A0FG-10A-01D-A012-01 4c81cb06-2c3f-464e-bc22-240802b85031 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D12_628556.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-10A TCGA-AN-A0FG-10A-01D-A012-01 4c81cb06-2c3f-464e-bc22-240802b85031 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D12_628556.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-10A TCGA-AN-A0FG-10A-01D-A017-09 343afbce-425a-40e9-aea2-f27d9dabb5f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-10A TCGA-AN-A0FG-10A-01D-A018-08 23df27bf-13c7-4136-81e5-677001f5df68 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-10A TCGA-AN-A0FG-10A-01D-A069-02 d585c269-6ac3-4cbe-b3a4-0f0eb39084bc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-10A TCGA-AN-A0FG-10A-01W-A021-09 c0bcf153-d496-464d-bdf5-d3553350d9a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-10A TCGA-AN-A0FG-10A-01W-A022-08 bac6fa43-aff3-4b5e-9238-0994ae95b55b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-10A TCGA-AN-A0FG-10A-01X-A025-09 77be290c-2813-469f-a966-e3182b291209 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FG TCGA-AN-A0FG-10A TCGA-AN-A0FG-10A-01X-A026-08 b7a7ed88-d5d6-40e7-85fa-d50d7fc7aa2e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM Redaction Subject identity unknown Identical subject to TCGA-AN-A0FE TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11D-A00Y-05 ec56f65c-6ae1-459a-b36c-2441ea321833 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11D-A00Y-05 ec56f65c-6ae1-459a-b36c-2441ea321833 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-AN-A0FJ-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11D-A00Y-05 ec56f65c-6ae1-459a-b36c-2441ea321833 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-AN-A0FJ-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11D-A00Y-05 ec56f65c-6ae1-459a-b36c-2441ea321833 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-AN-A0FJ-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11D-A011-01 84412819-5a7d-4d8c-a834-7170777e94e6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11D-A011-01 84412819-5a7d-4d8c-a834-7170777e94e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A03_628536.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11D-A011-01 84412819-5a7d-4d8c-a834-7170777e94e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A03_628536.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11D-A011-01 84412819-5a7d-4d8c-a834-7170777e94e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A03_628536.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11D-A011-01 84412819-5a7d-4d8c-a834-7170777e94e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A03_628536.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11D-A011-01 84412819-5a7d-4d8c-a834-7170777e94e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A03_628536.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11D-A011-01 84412819-5a7d-4d8c-a834-7170777e94e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A03_628536.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11D-A011-01 84412819-5a7d-4d8c-a834-7170777e94e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A03_628536.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11D-A011-01 84412819-5a7d-4d8c-a834-7170777e94e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A03_628536.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11D-A015-09 e31dc456-4209-44ca-87d1-94288c80ce59 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11D-A016-08 aabfe4bc-941e-41d6-830d-3c5ea5341d57 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11D-A068-02 d4a01ddb-0b69-42a8-b9e2-08cf6bd75b4f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11R-A00Z-07 d6b8993f-e850-47a9-842d-ef6173866780 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11R-A00Z-07 d6b8993f-e850-47a9-842d-ef6173866780 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011870_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11R-A00Z-07 d6b8993f-e850-47a9-842d-ef6173866780 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011870_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11R-A00Z-07 d6b8993f-e850-47a9-842d-ef6173866780 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011870_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11R-A00Z-07 d6b8993f-e850-47a9-842d-ef6173866780 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_658838.TCGA-AN-A0FJ-01A-11R-A00Z-07.110308_UNC9-SN296_0158_BB042UABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11R-A00Z-07 d6b8993f-e850-47a9-842d-ef6173866780 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_658898.TCGA-AN-A0FJ-01A-11R-A00Z-07.110308_UNC9-SN296_0158_BB042UABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11R-A00Z-07 d6b8993f-e850-47a9-842d-ef6173866780 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_658916.TCGA-AN-A0FJ-01A-11R-A00Z-07.110308_UNC9-SN296_0158_BB042UABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11R-A010-13 61163504-d52f-4ea6-8952-b90589662ae0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11R-A010-13 61163504-d52f-4ea6-8952-b90589662ae0 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0FJ-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11R-A010-13 61163504-d52f-4ea6-8952-b90589662ae0 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0FJ-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11W-A019-09 6b988737-0504-42bb-8c75-d70d7a312e68 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11W-A019-09 6b988737-0504-42bb-8c75-d70d7a312e68 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11W-A020-08 8af66d2c-7b84-4a71-8f21-7b905ba54caf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11X-A023-09 7a802864-5d95-4695-be37-feb589583813 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-01A TCGA-AN-A0FJ-01A-11X-A024-08 9866fdab-ce22-45c7-90ca-0fa07150e050 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-10A TCGA-AN-A0FJ-10A-01D-A012-01 ab6503c1-f0bc-48c1-b1c7-6fb315966f77 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-10A TCGA-AN-A0FJ-10A-01D-A012-01 ab6503c1-f0bc-48c1-b1c7-6fb315966f77 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F02_628404.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-AN-A0FJ TCGA-AN-A0FJ-10A TCGA-AN-A0FJ-10A-01D-A012-01 ab6503c1-f0bc-48c1-b1c7-6fb315966f77 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F02_628404.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-10A TCGA-AN-A0FJ-10A-01D-A012-01 ab6503c1-f0bc-48c1-b1c7-6fb315966f77 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F02_628404.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-10A TCGA-AN-A0FJ-10A-01D-A012-01 ab6503c1-f0bc-48c1-b1c7-6fb315966f77 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F02_628404.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-10A TCGA-AN-A0FJ-10A-01D-A012-01 ab6503c1-f0bc-48c1-b1c7-6fb315966f77 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F02_628404.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-10A TCGA-AN-A0FJ-10A-01D-A012-01 ab6503c1-f0bc-48c1-b1c7-6fb315966f77 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F02_628404.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-10A TCGA-AN-A0FJ-10A-01D-A012-01 ab6503c1-f0bc-48c1-b1c7-6fb315966f77 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F02_628404.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-10A TCGA-AN-A0FJ-10A-01D-A012-01 ab6503c1-f0bc-48c1-b1c7-6fb315966f77 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F02_628404.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-10A TCGA-AN-A0FJ-10A-01D-A017-09 cec0432b-7c7c-43f6-9234-eb8175a5e939 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-10A TCGA-AN-A0FJ-10A-01D-A018-08 486c4ca6-0d39-46f7-b7f7-97b310978810 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-10A TCGA-AN-A0FJ-10A-01D-A069-02 8106b75a-e8d6-405e-96a5-4a7bfcdb461e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-10A TCGA-AN-A0FJ-10A-01W-A021-09 02ed13b6-5cc2-423d-9b5a-b1c802c33569 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-10A TCGA-AN-A0FJ-10A-01W-A021-09 02ed13b6-5cc2-423d-9b5a-b1c802c33569 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-10A TCGA-AN-A0FJ-10A-01W-A022-08 37828afc-a77a-47cd-a144-8c924dd99c9f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-10A TCGA-AN-A0FJ-10A-01X-A025-09 66ddbda9-dfc7-4f35-8929-ba2c33dc2baa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FJ TCGA-AN-A0FJ-10A TCGA-AN-A0FJ-10A-01X-A026-08 ffc4212e-5a0c-4c7d-8d92-83d5e7c210c6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11D-A032-05 aaa67c78-6ac7-4ab4-b6c8-a128dc96ce67 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11D-A032-05 aaa67c78-6ac7-4ab4-b6c8-a128dc96ce67 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AN-A0FK-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11D-A032-05 aaa67c78-6ac7-4ab4-b6c8-a128dc96ce67 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AN-A0FK-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11D-A032-05 aaa67c78-6ac7-4ab4-b6c8-a128dc96ce67 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AN-A0FK-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11D-A033-02 bea9528b-7e4d-4137-9977-a45ad882d5d7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11D-A036-01 4da6e060-d771-42fd-9d1b-2310848775d7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11D-A036-01 4da6e060-d771-42fd-9d1b-2310848775d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F04_666992.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11D-A036-01 4da6e060-d771-42fd-9d1b-2310848775d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F04_666992.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11D-A036-01 4da6e060-d771-42fd-9d1b-2310848775d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F04_666992.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11D-A036-01 4da6e060-d771-42fd-9d1b-2310848775d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F04_666992.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11D-A036-01 4da6e060-d771-42fd-9d1b-2310848775d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F04_666992.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11D-A036-01 4da6e060-d771-42fd-9d1b-2310848775d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F04_666992.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11D-A036-01 4da6e060-d771-42fd-9d1b-2310848775d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F04_666992.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11D-A036-01 4da6e060-d771-42fd-9d1b-2310848775d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F04_666992.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11D-A044-08 a0916583-b5f6-45db-8688-6bef59b3e52c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11D-A045-09 bb6ce7bc-ba6a-4103-8802-9b776c8aa7fe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11R-A034-07 570ee0fd-7003-45ce-9c42-8f6145604186 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11R-A034-07 570ee0fd-7003-45ce-9c42-8f6145604186 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012114_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11R-A034-07 570ee0fd-7003-45ce-9c42-8f6145604186 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012114_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11R-A034-07 570ee0fd-7003-45ce-9c42-8f6145604186 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012114_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11R-A034-07 570ee0fd-7003-45ce-9c42-8f6145604186 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_471790.TCGA-AN-A0FK-01A-11R-A034-07.110427_UNC15-SN850_0064_AB066WABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11R-A034-07 570ee0fd-7003-45ce-9c42-8f6145604186 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_471803.TCGA-AN-A0FK-01A-11R-A034-07.110427_UNC15-SN850_0064_AB066WABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11R-A034-07 570ee0fd-7003-45ce-9c42-8f6145604186 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_472376.TCGA-AN-A0FK-01A-11R-A034-07.110427_UNC15-SN850_0064_AB066WABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11R-A035-13 8f457e85-5974-4d89-b2b3-778b5c2f5d6b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11R-A035-13 8f457e85-5974-4d89-b2b3-778b5c2f5d6b miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0FK-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11R-A035-13 8f457e85-5974-4d89-b2b3-778b5c2f5d6b miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0FK-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11W-A050-09 a765959e-b234-427d-aade-855d6d4981d9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11W-A050-09 a765959e-b234-427d-aade-855d6d4981d9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11W-A051-08 37219863-519a-4b43-b76e-407335b9596f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11X-A048-08 d5411eeb-f04e-4394-af5c-f24673889aa9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-01A TCGA-AN-A0FK-01A-11X-A049-09 06f1d5b9-5707-4754-ae96-55bf976f48a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-10A TCGA-AN-A0FK-10A-01D-A031-02 a9a2cc85-0287-40d9-a0b4-bc1d5ba0add6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-10A TCGA-AN-A0FK-10A-01D-A037-01 d346df0e-d496-4f01-bc52-d3b45f8016da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-10A TCGA-AN-A0FK-10A-01D-A037-01 d346df0e-d496-4f01-bc52-d3b45f8016da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F11_667008.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0FK TCGA-AN-A0FK-10A TCGA-AN-A0FK-10A-01D-A037-01 d346df0e-d496-4f01-bc52-d3b45f8016da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F11_667008.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-10A TCGA-AN-A0FK-10A-01D-A037-01 d346df0e-d496-4f01-bc52-d3b45f8016da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F11_667008.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-10A TCGA-AN-A0FK-10A-01D-A037-01 d346df0e-d496-4f01-bc52-d3b45f8016da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F11_667008.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-10A TCGA-AN-A0FK-10A-01D-A037-01 d346df0e-d496-4f01-bc52-d3b45f8016da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F11_667008.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-10A TCGA-AN-A0FK-10A-01D-A037-01 d346df0e-d496-4f01-bc52-d3b45f8016da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F11_667008.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-10A TCGA-AN-A0FK-10A-01D-A037-01 d346df0e-d496-4f01-bc52-d3b45f8016da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F11_667008.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-10A TCGA-AN-A0FK-10A-01D-A037-01 d346df0e-d496-4f01-bc52-d3b45f8016da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/BONZE_p_TCGAb56_SNP_1N_GenomeWideSNP_6_F11_667008.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-10A TCGA-AN-A0FK-10A-01D-A046-08 73486405-8e73-46c5-a28d-6ae1c944f296 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-10A TCGA-AN-A0FK-10A-01D-A047-09 6c331f4c-8b88-4c80-afe3-b800fb9fd85a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-10A TCGA-AN-A0FK-10A-01W-A053-08 b1646234-8c1f-423e-a54e-764f0dbb7c37 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-10A TCGA-AN-A0FK-10A-01W-A055-09 779c84bb-5769-4fca-ad11-fd743808c144 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-10A TCGA-AN-A0FK-10A-01W-A055-09 779c84bb-5769-4fca-ad11-fd743808c144 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-10A TCGA-AN-A0FK-10A-01X-A052-08 1b844b33-410f-410d-9bea-6f0ede4c7d8e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FK TCGA-AN-A0FK-10A TCGA-AN-A0FK-10A-01X-A054-09 15a31282-4051-4f7a-b086-bd5e067a54e3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11D-A032-05 8cf64229-f1cd-47cf-b04c-a23ff9d7a133 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11D-A032-05 8cf64229-f1cd-47cf-b04c-a23ff9d7a133 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AN-A0FL-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11D-A032-05 8cf64229-f1cd-47cf-b04c-a23ff9d7a133 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AN-A0FL-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11D-A032-05 8cf64229-f1cd-47cf-b04c-a23ff9d7a133 DNA Methylation HumanMethylation27 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11D-A036-01 a5ec69cb-1eeb-4a12-bdc6-e7f3b6eaa7df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G06_667062.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11D-A036-01 a5ec69cb-1eeb-4a12-bdc6-e7f3b6eaa7df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G06_667062.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11D-A036-01 a5ec69cb-1eeb-4a12-bdc6-e7f3b6eaa7df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G06_667062.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11D-A036-01 a5ec69cb-1eeb-4a12-bdc6-e7f3b6eaa7df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G06_667062.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11D-A036-01 a5ec69cb-1eeb-4a12-bdc6-e7f3b6eaa7df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G06_667062.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11D-A036-01 a5ec69cb-1eeb-4a12-bdc6-e7f3b6eaa7df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G06_667062.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11D-A036-01 a5ec69cb-1eeb-4a12-bdc6-e7f3b6eaa7df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G06_667062.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11D-A036-01 a5ec69cb-1eeb-4a12-bdc6-e7f3b6eaa7df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G06_667062.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11D-A044-08 4fa5b7b2-ee31-458d-a363-68bb6b0d7bb4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11D-A045-09 1309a3dd-952f-4224-9b7d-e01c7cbdb5d0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11R-A034-07 299add94-3b97-41a6-9fd4-c572f88982d5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11R-A034-07 299add94-3b97-41a6-9fd4-c572f88982d5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012091_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11R-A034-07 299add94-3b97-41a6-9fd4-c572f88982d5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012091_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11R-A034-07 299add94-3b97-41a6-9fd4-c572f88982d5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012091_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11R-A034-07 299add94-3b97-41a6-9fd4-c572f88982d5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_471657.TCGA-AN-A0FL-01A-11R-A034-07.110427_UNC15-SN850_0064_AB066WABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11R-A034-07 299add94-3b97-41a6-9fd4-c572f88982d5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_471664.TCGA-AN-A0FL-01A-11R-A034-07.110427_UNC15-SN850_0064_AB066WABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11R-A034-07 299add94-3b97-41a6-9fd4-c572f88982d5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_471948.TCGA-AN-A0FL-01A-11R-A034-07.110427_UNC15-SN850_0064_AB066WABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11R-A035-13 30c0b347-bac3-48b3-8827-1bbf23756d9e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11R-A035-13 30c0b347-bac3-48b3-8827-1bbf23756d9e miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0FL-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11R-A035-13 30c0b347-bac3-48b3-8827-1bbf23756d9e miRNASeq IlluminaGA_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11W-A051-08 a0024b3c-536a-4257-8ffa-3d4d4e54f4c2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11X-A048-08 8513da4a-6217-4c8a-9fae-1eada897d9ad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-01A TCGA-AN-A0FL-01A-11X-A049-09 ac1daa6f-1f11-4b14-9847-e23cfb7b0f8e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-10A TCGA-AN-A0FL-10A-01D-A031-02 8131be09-d80e-4341-96e8-a2dedd7160c7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-10A TCGA-AN-A0FL-10A-01D-A037-01 cc8c06e8-b86f-41a0-a69f-7c257d953677 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-10A TCGA-AN-A0FL-10A-01D-A037-01 cc8c06e8-b86f-41a0-a69f-7c257d953677 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F05_667086.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0FL TCGA-AN-A0FL-10A TCGA-AN-A0FL-10A-01D-A037-01 cc8c06e8-b86f-41a0-a69f-7c257d953677 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F05_667086.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-10A TCGA-AN-A0FL-10A-01D-A037-01 cc8c06e8-b86f-41a0-a69f-7c257d953677 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F05_667086.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-10A TCGA-AN-A0FL-10A-01D-A037-01 cc8c06e8-b86f-41a0-a69f-7c257d953677 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F05_667086.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-10A TCGA-AN-A0FL-10A-01D-A037-01 cc8c06e8-b86f-41a0-a69f-7c257d953677 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F05_667086.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-10A TCGA-AN-A0FL-10A-01D-A037-01 cc8c06e8-b86f-41a0-a69f-7c257d953677 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F05_667086.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-10A TCGA-AN-A0FL-10A-01D-A037-01 cc8c06e8-b86f-41a0-a69f-7c257d953677 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F05_667086.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-10A TCGA-AN-A0FL-10A-01D-A037-01 cc8c06e8-b86f-41a0-a69f-7c257d953677 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F05_667086.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-10A TCGA-AN-A0FL-10A-01D-A046-08 a8779022-f5ac-45fd-8923-3de378ed5e39 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-10A TCGA-AN-A0FL-10A-01D-A047-09 1941664c-6594-4b19-9dda-4eab2179eba9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-10A TCGA-AN-A0FL-10A-01W-A053-08 260a1e71-e98e-495f-97b9-3ddf1bb2b7d9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-10A TCGA-AN-A0FL-10A-01W-A055-09 023ceb74-14a9-4316-8e15-cad12165baa0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-10A TCGA-AN-A0FL-10A-01W-A055-09 023ceb74-14a9-4316-8e15-cad12165baa0 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-10A TCGA-AN-A0FL-10A-01X-A052-08 44f9f4ab-0b19-4148-adb5-f48466202454 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FL TCGA-AN-A0FL-10A TCGA-AN-A0FL-10A-01X-A054-09 6404f80e-6fdd-4b77-ae58-571301f14d36 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11D-A032-05 bbfcc472-3fe3-4688-b766-f2bf0130a543 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11D-A032-05 bbfcc472-3fe3-4688-b766-f2bf0130a543 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AN-A0FN-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11D-A032-05 bbfcc472-3fe3-4688-b766-f2bf0130a543 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AN-A0FN-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11D-A032-05 bbfcc472-3fe3-4688-b766-f2bf0130a543 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AN-A0FN-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11D-A033-02 cb7210cc-583f-49b7-8206-9e1c92ec0759 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11D-A036-01 ce822227-cbde-4263-9264-71ef718916ea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11D-A036-01 ce822227-cbde-4263-9264-71ef718916ea SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A06_667128.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11D-A036-01 ce822227-cbde-4263-9264-71ef718916ea SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A06_667128.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11D-A036-01 ce822227-cbde-4263-9264-71ef718916ea SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A06_667128.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11D-A036-01 ce822227-cbde-4263-9264-71ef718916ea SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A06_667128.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11D-A036-01 ce822227-cbde-4263-9264-71ef718916ea SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A06_667128.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11D-A036-01 ce822227-cbde-4263-9264-71ef718916ea SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A06_667128.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11D-A036-01 ce822227-cbde-4263-9264-71ef718916ea SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A06_667128.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11D-A036-01 ce822227-cbde-4263-9264-71ef718916ea SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A06_667128.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11D-A044-08 dff14860-cce9-431c-91bd-490db161ef65 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11D-A045-09 1ccee3a3-a708-497f-b27b-da377f4811da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11R-A034-07 4aac7c40-db6b-4648-a82a-7bf397de913a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11R-A034-07 4aac7c40-db6b-4648-a82a-7bf397de913a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012115_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11R-A034-07 4aac7c40-db6b-4648-a82a-7bf397de913a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012115_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11R-A034-07 4aac7c40-db6b-4648-a82a-7bf397de913a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012115_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11R-A034-07 4aac7c40-db6b-4648-a82a-7bf397de913a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_473036.TCGA-AN-A0FN-01A-11R-A034-07.110414_UNC14-SN744_0094_AB07M4ABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11R-A034-07 4aac7c40-db6b-4648-a82a-7bf397de913a RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0FN-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11W-A050-09 8f583981-b257-43ee-9c9e-71a192a49d38 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11W-A050-09 8f583981-b257-43ee-9c9e-71a192a49d38 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11W-A051-08 80c0e76c-d38b-492c-9fa2-13b4b533fba8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11X-A048-08 ea1c0020-fcc7-4cf8-95d8-f971174a3ef1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-01A TCGA-AN-A0FN-01A-11X-A049-09 ee9886ae-a355-4862-9c31-987bee5faa7f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-10A TCGA-AN-A0FN-10A-01D-A031-02 78e9c1c9-9cb2-49eb-9ee7-09821c5ae954 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-10A TCGA-AN-A0FN-10A-01D-A037-01 a521f509-35c9-48b9-b164-4a248f4dd649 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-10A TCGA-AN-A0FN-10A-01D-A037-01 a521f509-35c9-48b9-b164-4a248f4dd649 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F10_667156.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0FN TCGA-AN-A0FN-10A TCGA-AN-A0FN-10A-01D-A037-01 a521f509-35c9-48b9-b164-4a248f4dd649 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F10_667156.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-10A TCGA-AN-A0FN-10A-01D-A037-01 a521f509-35c9-48b9-b164-4a248f4dd649 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F10_667156.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-10A TCGA-AN-A0FN-10A-01D-A037-01 a521f509-35c9-48b9-b164-4a248f4dd649 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F10_667156.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-10A TCGA-AN-A0FN-10A-01D-A037-01 a521f509-35c9-48b9-b164-4a248f4dd649 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F10_667156.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-10A TCGA-AN-A0FN-10A-01D-A037-01 a521f509-35c9-48b9-b164-4a248f4dd649 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F10_667156.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-10A TCGA-AN-A0FN-10A-01D-A037-01 a521f509-35c9-48b9-b164-4a248f4dd649 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F10_667156.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-10A TCGA-AN-A0FN-10A-01D-A037-01 a521f509-35c9-48b9-b164-4a248f4dd649 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F10_667156.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-10A TCGA-AN-A0FN-10A-01D-A046-08 ab2461dc-3495-4cf9-a54d-691dc19ff1cd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-10A TCGA-AN-A0FN-10A-01D-A047-09 b50a47e2-0b05-48e5-82b1-0585f26efc15 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-10A TCGA-AN-A0FN-10A-01W-A053-08 1f213c0b-6457-4b32-a0b4-014d990f4b9c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-10A TCGA-AN-A0FN-10A-01W-A055-09 cab9af86-5f00-4d36-8d62-424add7d7492 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-10A TCGA-AN-A0FN-10A-01W-A055-09 cab9af86-5f00-4d36-8d62-424add7d7492 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-10A TCGA-AN-A0FN-10A-01X-A052-08 3804c44e-7b6d-4015-947f-3cd83b5a2759 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FN TCGA-AN-A0FN-10A TCGA-AN-A0FN-10A-01X-A054-09 ac03e391-5343-44a7-ad90-7694c07d9021 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11D-A032-05 b0e9a816-d237-4919-aad9-54a07f6ea6b1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11D-A032-05 b0e9a816-d237-4919-aad9-54a07f6ea6b1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AN-A0FS-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11D-A032-05 b0e9a816-d237-4919-aad9-54a07f6ea6b1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AN-A0FS-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11D-A032-05 b0e9a816-d237-4919-aad9-54a07f6ea6b1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AN-A0FS-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11D-A033-02 c9db6b24-9309-4551-bed7-bc34e171d442 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11D-A036-01 5ed36cde-08a1-439e-8b03-7ed3fbddbacf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11D-A036-01 5ed36cde-08a1-439e-8b03-7ed3fbddbacf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E10_667208.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11D-A036-01 5ed36cde-08a1-439e-8b03-7ed3fbddbacf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E10_667208.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11D-A036-01 5ed36cde-08a1-439e-8b03-7ed3fbddbacf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E10_667208.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11D-A036-01 5ed36cde-08a1-439e-8b03-7ed3fbddbacf SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E10_667208.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11D-A036-01 5ed36cde-08a1-439e-8b03-7ed3fbddbacf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E10_667208.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11D-A036-01 5ed36cde-08a1-439e-8b03-7ed3fbddbacf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E10_667208.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11D-A044-08 f305a4b7-b466-471a-b148-138daa526eb5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11D-A045-09 eb3e4352-c3d9-4209-9c7d-d478f1f5b88b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11R-A034-07 29ac13ea-a350-42e9-a3eb-024c537ead94 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11R-A034-07 29ac13ea-a350-42e9-a3eb-024c537ead94 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012104_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11R-A034-07 29ac13ea-a350-42e9-a3eb-024c537ead94 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012104_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11R-A034-07 29ac13ea-a350-42e9-a3eb-024c537ead94 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012104_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11R-A034-07 29ac13ea-a350-42e9-a3eb-024c537ead94 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_473199.TCGA-AN-A0FS-01A-11R-A034-07.110414_UNC14-SN744_0094_AB07M4ABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11R-A034-07 29ac13ea-a350-42e9-a3eb-024c537ead94 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_473206.TCGA-AN-A0FS-01A-11R-A034-07.110414_UNC14-SN744_0094_AB07M4ABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11R-A034-07 29ac13ea-a350-42e9-a3eb-024c537ead94 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_473249.TCGA-AN-A0FS-01A-11R-A034-07.110414_UNC14-SN744_0094_AB07M4ABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11R-A035-13 bf40e6a0-2ee2-4198-b263-d9e8383aad8a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11R-A035-13 bf40e6a0-2ee2-4198-b263-d9e8383aad8a miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0FS-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11R-A035-13 bf40e6a0-2ee2-4198-b263-d9e8383aad8a miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0FS-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11W-A050-09 9bb76d20-cefb-4f7a-80c2-aa2178e302a9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11W-A050-09 9bb76d20-cefb-4f7a-80c2-aa2178e302a9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11W-A050-09 9bb76d20-cefb-4f7a-80c2-aa2178e302a9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11W-A051-08 e3e73530-7373-4f0c-98ca-ff55e1925db7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11X-A048-08 e00f0426-2d68-49d1-acd8-793fda7517a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-01A TCGA-AN-A0FS-01A-11X-A049-09 4d11c161-f592-440d-a201-d88a3dd864fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-10A TCGA-AN-A0FS-10A-01D-A031-02 3f8e93f7-21c1-455a-8729-0ec669be4e4b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-10A TCGA-AN-A0FS-10A-01D-A037-01 dbdce599-d19a-4765-8213-d616bae97a7d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-10A TCGA-AN-A0FS-10A-01D-A037-01 dbdce599-d19a-4765-8213-d616bae97a7d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B07_667218.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0FS TCGA-AN-A0FS-10A TCGA-AN-A0FS-10A-01D-A037-01 dbdce599-d19a-4765-8213-d616bae97a7d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B07_667218.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-10A TCGA-AN-A0FS-10A-01D-A037-01 dbdce599-d19a-4765-8213-d616bae97a7d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B07_667218.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-10A TCGA-AN-A0FS-10A-01D-A037-01 dbdce599-d19a-4765-8213-d616bae97a7d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B07_667218.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-10A TCGA-AN-A0FS-10A-01D-A037-01 dbdce599-d19a-4765-8213-d616bae97a7d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B07_667218.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-10A TCGA-AN-A0FS-10A-01D-A037-01 dbdce599-d19a-4765-8213-d616bae97a7d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B07_667218.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-10A TCGA-AN-A0FS-10A-01D-A037-01 dbdce599-d19a-4765-8213-d616bae97a7d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B07_667218.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-10A TCGA-AN-A0FS-10A-01D-A037-01 dbdce599-d19a-4765-8213-d616bae97a7d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B07_667218.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-10A TCGA-AN-A0FS-10A-01D-A046-08 5a85e58e-512f-4f66-b4fb-6accbe9a324f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-10A TCGA-AN-A0FS-10A-01D-A047-09 f83adac2-f798-439d-afdc-8719b3db8168 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-10A TCGA-AN-A0FS-10A-01W-A053-08 8416b18b-8237-43fc-bcc3-0f4341ed05f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-10A TCGA-AN-A0FS-10A-01W-A055-09 608d90c1-f205-43fa-a9cd-dcdf54bb927d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-10A TCGA-AN-A0FS-10A-01W-A055-09 608d90c1-f205-43fa-a9cd-dcdf54bb927d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-10A TCGA-AN-A0FS-10A-01W-A055-09 608d90c1-f205-43fa-a9cd-dcdf54bb927d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-10A TCGA-AN-A0FS-10A-01X-A052-08 e653d28c-fffb-42c6-8b08-3d42f2c75609 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FS TCGA-AN-A0FS-10A TCGA-AN-A0FS-10A-01X-A054-09 af29bd46-d6a0-441a-b127-14dd9d19b282 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-01A TCGA-AN-A0FT-01A-11D-A032-05 61b26f83-5d17-470f-b25c-b026e98e9388 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-01A TCGA-AN-A0FT-01A-11D-A032-05 61b26f83-5d17-470f-b25c-b026e98e9388 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AN-A0FT-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-01A TCGA-AN-A0FT-01A-11D-A032-05 61b26f83-5d17-470f-b25c-b026e98e9388 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AN-A0FT-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-01A TCGA-AN-A0FT-01A-11D-A032-05 61b26f83-5d17-470f-b25c-b026e98e9388 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AN-A0FT-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-01A TCGA-AN-A0FT-01A-11D-A033-02 961b106c-4421-4823-8473-8f3a28a17f86 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-01A TCGA-AN-A0FT-01A-11D-A036-01 8f41eb88-b15f-4b04-934a-0a110a544fbc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-01A TCGA-AN-A0FT-01A-11D-A036-01 8f41eb88-b15f-4b04-934a-0a110a544fbc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A02_667160.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0FT TCGA-AN-A0FT-01A TCGA-AN-A0FT-01A-11D-A036-01 8f41eb88-b15f-4b04-934a-0a110a544fbc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A02_667160.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-01A TCGA-AN-A0FT-01A-11D-A036-01 8f41eb88-b15f-4b04-934a-0a110a544fbc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A02_667160.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-01A TCGA-AN-A0FT-01A-11D-A036-01 8f41eb88-b15f-4b04-934a-0a110a544fbc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A02_667160.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-01A TCGA-AN-A0FT-01A-11D-A036-01 8f41eb88-b15f-4b04-934a-0a110a544fbc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A02_667160.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-01A TCGA-AN-A0FT-01A-11D-A036-01 8f41eb88-b15f-4b04-934a-0a110a544fbc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A02_667160.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-01A TCGA-AN-A0FT-01A-11D-A036-01 8f41eb88-b15f-4b04-934a-0a110a544fbc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A02_667160.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-01A TCGA-AN-A0FT-01A-11D-A036-01 8f41eb88-b15f-4b04-934a-0a110a544fbc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A02_667160.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-01A TCGA-AN-A0FT-01A-11D-A044-08 40f4acd3-7147-4993-b61e-4fc40047aebb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-01A TCGA-AN-A0FT-01A-11D-A045-09 52589730-38c6-4fac-b8fd-07b0acab3651 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-01A TCGA-AN-A0FT-01A-11R-A034-07 ae592879-5689-4818-8ac3-23a00c5d3934 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-01A TCGA-AN-A0FT-01A-11R-A034-07 ae592879-5689-4818-8ac3-23a00c5d3934 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012092_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-AN-A0FT TCGA-AN-A0FT-01A TCGA-AN-A0FT-01A-11R-A034-07 ae592879-5689-4818-8ac3-23a00c5d3934 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012092_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-AN-A0FT TCGA-AN-A0FT-01A TCGA-AN-A0FT-01A-11R-A034-07 ae592879-5689-4818-8ac3-23a00c5d3934 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012092_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-AN-A0FT TCGA-AN-A0FT-01A TCGA-AN-A0FT-01A-11R-A034-07 ae592879-5689-4818-8ac3-23a00c5d3934 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_472974.TCGA-AN-A0FT-01A-11R-A034-07.110414_UNC14-SN744_0094_AB07M4ABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-01A TCGA-AN-A0FT-01A-11R-A034-07 ae592879-5689-4818-8ac3-23a00c5d3934 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_472991.TCGA-AN-A0FT-01A-11R-A034-07.110414_UNC14-SN744_0094_AB07M4ABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-01A TCGA-AN-A0FT-01A-11R-A034-07 ae592879-5689-4818-8ac3-23a00c5d3934 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_473015.TCGA-AN-A0FT-01A-11R-A034-07.110414_UNC14-SN744_0094_AB07M4ABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-01A TCGA-AN-A0FT-01A-11R-A035-13 57887211-323e-44ff-a895-98fe4885613e Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-01A TCGA-AN-A0FT-01A-11X-A049-09 f0e47c98-86fd-4bea-9c3e-c85812900559 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-10A TCGA-AN-A0FT-10A-01D-A031-02 29e29aff-2ddf-40a4-813e-7f9a40cb5a05 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-10A TCGA-AN-A0FT-10A-01D-A037-01 7c965d80-f29e-4ac7-81b7-699680258139 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-10A TCGA-AN-A0FT-10A-01D-A037-01 7c965d80-f29e-4ac7-81b7-699680258139 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A08_667112.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0FT TCGA-AN-A0FT-10A TCGA-AN-A0FT-10A-01D-A037-01 7c965d80-f29e-4ac7-81b7-699680258139 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A08_667112.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-10A TCGA-AN-A0FT-10A-01D-A037-01 7c965d80-f29e-4ac7-81b7-699680258139 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A08_667112.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-10A TCGA-AN-A0FT-10A-01D-A037-01 7c965d80-f29e-4ac7-81b7-699680258139 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A08_667112.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-10A TCGA-AN-A0FT-10A-01D-A046-08 3cf2e77f-ed86-4d0f-a0c5-dbe46f4c99b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-10A TCGA-AN-A0FT-10A-01D-A047-09 492cbc37-6edb-4e06-a57d-8cc6fe6cadcf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-10A TCGA-AN-A0FT-10A-01W-A053-08 cc416ff8-e226-40c9-8c74-1d5fd80dd3e1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-10A TCGA-AN-A0FT-10A-01W-A055-09 520abbc0-ff40-4a8e-b002-c36bac79cb72 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-10A TCGA-AN-A0FT-10A-01W-A055-09 520abbc0-ff40-4a8e-b002-c36bac79cb72 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-10A TCGA-AN-A0FT-10A-01X-A052-08 8f8d1715-3b33-4984-87fa-ad897d246ff9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FT TCGA-AN-A0FT-10A TCGA-AN-A0FT-10A-01X-A054-09 ff992649-1d62-481a-acf3-a0103e7bec4b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11D-A00Y-05 73285fdf-2780-481c-9762-ff5e824a2d4f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11D-A00Y-05 73285fdf-2780-481c-9762-ff5e824a2d4f DNA Methylation HumanMethylation27 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-AN-A0FV-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11D-A011-01 1df1f52c-ac80-480a-af35-772bd79ad3d0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11D-A011-01 1df1f52c-ac80-480a-af35-772bd79ad3d0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A02_628574.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11D-A011-01 1df1f52c-ac80-480a-af35-772bd79ad3d0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A02_628574.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11D-A011-01 1df1f52c-ac80-480a-af35-772bd79ad3d0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A02_628574.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11D-A011-01 1df1f52c-ac80-480a-af35-772bd79ad3d0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A02_628574.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11D-A011-01 1df1f52c-ac80-480a-af35-772bd79ad3d0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A02_628574.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11D-A011-01 1df1f52c-ac80-480a-af35-772bd79ad3d0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A02_628574.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11D-A011-01 1df1f52c-ac80-480a-af35-772bd79ad3d0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A02_628574.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11D-A011-01 1df1f52c-ac80-480a-af35-772bd79ad3d0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A02_628574.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11D-A015-09 66577252-2bb9-4e2a-9d13-033ac8490e54 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11D-A016-08 13ae732e-fd9e-4f5c-b0c6-1d57d670951d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11D-A068-02 0d9b2f52-3a73-47f3-a772-302889ede469 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11R-A00Z-07 600db536-d7c5-4cfa-bb80-fcc269b96b8c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11R-A00Z-07 600db536-d7c5-4cfa-bb80-fcc269b96b8c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011884_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11R-A00Z-07 600db536-d7c5-4cfa-bb80-fcc269b96b8c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011884_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11R-A00Z-07 600db536-d7c5-4cfa-bb80-fcc269b96b8c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011884_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11R-A00Z-07 600db536-d7c5-4cfa-bb80-fcc269b96b8c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_654400.TCGA-AN-A0FV-01A-11R-A00Z-07.110304_UNC12-SN629_0065_AB05PGABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11R-A00Z-07 600db536-d7c5-4cfa-bb80-fcc269b96b8c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_654433.TCGA-AN-A0FV-01A-11R-A00Z-07.110304_UNC12-SN629_0065_AB05PGABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11R-A00Z-07 600db536-d7c5-4cfa-bb80-fcc269b96b8c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_654507.TCGA-AN-A0FV-01A-11R-A00Z-07.110304_UNC12-SN629_0065_AB05PGABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11R-A010-13 ebf100c7-f019-4fa6-a753-5cf2150e2195 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11R-A010-13 ebf100c7-f019-4fa6-a753-5cf2150e2195 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0FV-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11R-A010-13 ebf100c7-f019-4fa6-a753-5cf2150e2195 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0FV-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11W-A019-09 c70259c1-f561-43d7-9829-6852815baa87 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11W-A019-09 c70259c1-f561-43d7-9829-6852815baa87 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11W-A020-08 cab57ea4-48d4-49ae-a3ef-8dfaf5819526 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11X-A023-09 9ad2c415-dca6-4a75-a74b-33d50164a7d5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-01A TCGA-AN-A0FV-01A-11X-A024-08 ca7d4557-a781-495f-a236-4254e31ba6b4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-10A TCGA-AN-A0FV-10A-01D-A012-01 dedc6bd3-5092-44e2-a744-2b7c13d0a9dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-10A TCGA-AN-A0FV-10A-01D-A012-01 dedc6bd3-5092-44e2-a744-2b7c13d0a9dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H04_628552.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-AN-A0FV TCGA-AN-A0FV-10A TCGA-AN-A0FV-10A-01D-A012-01 dedc6bd3-5092-44e2-a744-2b7c13d0a9dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H04_628552.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-10A TCGA-AN-A0FV-10A-01D-A012-01 dedc6bd3-5092-44e2-a744-2b7c13d0a9dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H04_628552.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-10A TCGA-AN-A0FV-10A-01D-A012-01 dedc6bd3-5092-44e2-a744-2b7c13d0a9dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H04_628552.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-10A TCGA-AN-A0FV-10A-01D-A012-01 dedc6bd3-5092-44e2-a744-2b7c13d0a9dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H04_628552.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-10A TCGA-AN-A0FV-10A-01D-A012-01 dedc6bd3-5092-44e2-a744-2b7c13d0a9dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H04_628552.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-10A TCGA-AN-A0FV-10A-01D-A012-01 dedc6bd3-5092-44e2-a744-2b7c13d0a9dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H04_628552.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-10A TCGA-AN-A0FV-10A-01D-A012-01 dedc6bd3-5092-44e2-a744-2b7c13d0a9dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_H04_628552.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-10A TCGA-AN-A0FV-10A-01D-A017-09 819f946d-8b4b-4f3c-95fd-a8018bacb694 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-10A TCGA-AN-A0FV-10A-01D-A018-08 f78fe9f3-8598-461b-812c-eed446f948ca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-10A TCGA-AN-A0FV-10A-01D-A069-02 86a0245f-6789-4962-b450-f98f2a9dc91a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-10A TCGA-AN-A0FV-10A-01W-A021-09 6cbd9cc2-e405-49d5-b512-cae7c4460f19 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-10A TCGA-AN-A0FV-10A-01W-A021-09 6cbd9cc2-e405-49d5-b512-cae7c4460f19 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-10A TCGA-AN-A0FV-10A-01W-A022-08 68087c60-9186-485f-b9d2-fd319bf6f383 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-10A TCGA-AN-A0FV-10A-01X-A025-09 22c6bbf2-ffc2-4699-b2d2-2e339e353919 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FV TCGA-AN-A0FV-10A TCGA-AN-A0FV-10A-01X-A026-08 905f38e5-a8c2-495a-84e8-ca35c625bc34 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11D-A032-05 9c3a531e-cae2-402c-ab35-1d39ec67b00d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11D-A032-05 9c3a531e-cae2-402c-ab35-1d39ec67b00d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AN-A0FW-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11D-A032-05 9c3a531e-cae2-402c-ab35-1d39ec67b00d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AN-A0FW-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11D-A032-05 9c3a531e-cae2-402c-ab35-1d39ec67b00d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AN-A0FW-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11D-A033-02 a17e64e5-2c44-42b7-ab83-b832129950d8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11D-A036-01 9450b2d6-de1d-4c14-8d56-21cc3363d9ab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11D-A036-01 9450b2d6-de1d-4c14-8d56-21cc3363d9ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C12_667090.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11D-A036-01 9450b2d6-de1d-4c14-8d56-21cc3363d9ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C12_667090.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11D-A036-01 9450b2d6-de1d-4c14-8d56-21cc3363d9ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C12_667090.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11D-A036-01 9450b2d6-de1d-4c14-8d56-21cc3363d9ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C12_667090.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11D-A036-01 9450b2d6-de1d-4c14-8d56-21cc3363d9ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C12_667090.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11D-A036-01 9450b2d6-de1d-4c14-8d56-21cc3363d9ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C12_667090.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11D-A036-01 9450b2d6-de1d-4c14-8d56-21cc3363d9ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C12_667090.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11D-A036-01 9450b2d6-de1d-4c14-8d56-21cc3363d9ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C12_667090.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11D-A044-08 09298803-6858-44da-a6dd-6e4f567a6395 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11D-A045-09 19ff06a6-3dda-4a81-a3f2-8ce49095fd0a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11R-A034-07 34b7764e-748a-415c-84b5-c45d0932e642 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11R-A034-07 34b7764e-748a-415c-84b5-c45d0932e642 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012116_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11R-A034-07 34b7764e-748a-415c-84b5-c45d0932e642 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012116_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11R-A034-07 34b7764e-748a-415c-84b5-c45d0932e642 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012116_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11R-A034-07 34b7764e-748a-415c-84b5-c45d0932e642 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_473202.TCGA-AN-A0FW-01A-11R-A034-07.110414_UNC14-SN744_0094_AB07M4ABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11R-A034-07 34b7764e-748a-415c-84b5-c45d0932e642 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_473204.TCGA-AN-A0FW-01A-11R-A034-07.110414_UNC14-SN744_0094_AB07M4ABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11R-A034-07 34b7764e-748a-415c-84b5-c45d0932e642 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_473246.TCGA-AN-A0FW-01A-11R-A034-07.110414_UNC14-SN744_0094_AB07M4ABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11R-A035-13 b2dae57f-b0de-4d6c-9576-54ce3cc41d9b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11R-A035-13 b2dae57f-b0de-4d6c-9576-54ce3cc41d9b miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0FW-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11R-A035-13 b2dae57f-b0de-4d6c-9576-54ce3cc41d9b miRNASeq IlluminaGA_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-01A TCGA-AN-A0FW-01A-11X-A049-09 9f9f1e24-2887-47ce-b3fd-9656d10a52bf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-10A TCGA-AN-A0FW-10A-01D-A031-02 2de5652b-57eb-47cb-9e07-80ed3adc4e05 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-10A TCGA-AN-A0FW-10A-01D-A037-01 d3defebf-aac8-4c4a-b748-51e1f7900122 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-10A TCGA-AN-A0FW-10A-01D-A037-01 d3defebf-aac8-4c4a-b748-51e1f7900122 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H07_667210.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0FW TCGA-AN-A0FW-10A TCGA-AN-A0FW-10A-01D-A037-01 d3defebf-aac8-4c4a-b748-51e1f7900122 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H07_667210.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-10A TCGA-AN-A0FW-10A-01D-A037-01 d3defebf-aac8-4c4a-b748-51e1f7900122 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H07_667210.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-10A TCGA-AN-A0FW-10A-01D-A037-01 d3defebf-aac8-4c4a-b748-51e1f7900122 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H07_667210.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-10A TCGA-AN-A0FW-10A-01D-A037-01 d3defebf-aac8-4c4a-b748-51e1f7900122 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H07_667210.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-10A TCGA-AN-A0FW-10A-01D-A037-01 d3defebf-aac8-4c4a-b748-51e1f7900122 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H07_667210.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-10A TCGA-AN-A0FW-10A-01D-A046-08 4e3cde9f-1063-4ee7-9e25-54a993f4deaa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-10A TCGA-AN-A0FW-10A-01D-A047-09 3ef78f72-7163-4ffe-9efb-0961f59fe04d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-10A TCGA-AN-A0FW-10A-01W-A053-08 d6dfa833-4faf-48f0-a7a0-f2fed5288ae2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-10A TCGA-AN-A0FW-10A-01W-A055-09 46a8d552-b686-4976-988e-a18128e26017 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-10A TCGA-AN-A0FW-10A-01W-A055-09 46a8d552-b686-4976-988e-a18128e26017 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-10A TCGA-AN-A0FW-10A-01X-A052-08 c6094625-2796-4006-92ea-bf4ac6a5ae12 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FW TCGA-AN-A0FW-10A TCGA-AN-A0FW-10A-01X-A054-09 4cab282c-181d-419c-bd1c-ba8987ed14d2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FX TCGA-AN-A0FX-01A TCGA-AN-A0FX-01A-11D-A032-05 7ee5aac6-605b-41cd-a7e6-826d3786a8e9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FX TCGA-AN-A0FX-01A TCGA-AN-A0FX-01A-11D-A032-05 7ee5aac6-605b-41cd-a7e6-826d3786a8e9 DNA Methylation HumanMethylation27 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AN-A0FX-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AN-A0FX TCGA-AN-A0FX-01A TCGA-AN-A0FX-01A-11D-A033-02 1b75869f-4811-4da3-935f-2fc387c37765 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FX TCGA-AN-A0FX-01A TCGA-AN-A0FX-01A-11D-A036-01 de299c77-a9d8-4acf-97ae-337427f27132 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FX TCGA-AN-A0FX-01A TCGA-AN-A0FX-01A-11D-A036-01 de299c77-a9d8-4acf-97ae-337427f27132 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C09_667242.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0FX TCGA-AN-A0FX-01A TCGA-AN-A0FX-01A-11D-A036-01 de299c77-a9d8-4acf-97ae-337427f27132 SNP Genome_Wide_SNP_6 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1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FX TCGA-AN-A0FX-10A TCGA-AN-A0FX-10A-01D-A037-01 336840a2-5a27-4a00-a2e2-c9ebf9259f65 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FX TCGA-AN-A0FX-10A TCGA-AN-A0FX-10A-01D-A037-01 336840a2-5a27-4a00-a2e2-c9ebf9259f65 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F07_667136.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0FX TCGA-AN-A0FX-10A TCGA-AN-A0FX-10A-01D-A037-01 336840a2-5a27-4a00-a2e2-c9ebf9259f65 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F07_667136.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FX TCGA-AN-A0FX-10A TCGA-AN-A0FX-10A-01D-A037-01 336840a2-5a27-4a00-a2e2-c9ebf9259f65 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F07_667136.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FX TCGA-AN-A0FX-10A TCGA-AN-A0FX-10A-01D-A037-01 336840a2-5a27-4a00-a2e2-c9ebf9259f65 SNP Genome_Wide_SNP_6 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1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FX TCGA-AN-A0FX-10A TCGA-AN-A0FX-10A-01W-A055-09 c87dc746-b04b-4b8e-af6a-ac51f04e3d6a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0FX TCGA-AN-A0FX-10A TCGA-AN-A0FX-10A-01X-A052-08 2a81a775-7700-4706-ab3c-3d4b0623a5d8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FX TCGA-AN-A0FX-10A TCGA-AN-A0FX-10A-01X-A054-09 77b3e7af-f00e-4443-83a6-12f3ccfd4c00 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-01A TCGA-AN-A0FY-01A-11D-A032-05 f7af2625-a821-45c2-a728-ecb953b0f955 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-01A TCGA-AN-A0FY-01A-11D-A032-05 f7af2625-a821-45c2-a728-ecb953b0f955 DNA Methylation HumanMethylation27 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-01A TCGA-AN-A0FY-01A-11D-A036-01 52ebb933-775a-448c-82ba-42fd1da8cf2e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G08_667094.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0FY TCGA-AN-A0FY-01A TCGA-AN-A0FY-01A-11D-A036-01 52ebb933-775a-448c-82ba-42fd1da8cf2e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G08_667094.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-01A TCGA-AN-A0FY-01A-11D-A036-01 52ebb933-775a-448c-82ba-42fd1da8cf2e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G08_667094.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-01A TCGA-AN-A0FY-01A-11D-A036-01 52ebb933-775a-448c-82ba-42fd1da8cf2e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G08_667094.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-01A TCGA-AN-A0FY-01A-11D-A036-01 52ebb933-775a-448c-82ba-42fd1da8cf2e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G08_667094.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-01A TCGA-AN-A0FY-01A-11D-A036-01 52ebb933-775a-448c-82ba-42fd1da8cf2e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G08_667094.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-01A TCGA-AN-A0FY-01A-11D-A036-01 52ebb933-775a-448c-82ba-42fd1da8cf2e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G08_667094.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-01A TCGA-AN-A0FY-01A-11D-A036-01 52ebb933-775a-448c-82ba-42fd1da8cf2e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G08_667094.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-01A TCGA-AN-A0FY-01A-11D-A044-08 d54b9496-2b3c-4486-99c9-ce7671e71ab1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-01A TCGA-AN-A0FY-01A-11D-A045-09 bd8a4e43-4b60-4613-b68d-2856b3979bb6 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0FY-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-01A TCGA-AN-A0FY-01A-11W-A050-09 a6a8bd08-0e60-442d-adce-de020177f82c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-01A TCGA-AN-A0FY-01A-11W-A050-09 a6a8bd08-0e60-442d-adce-de020177f82c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-01A TCGA-AN-A0FY-01A-11W-A051-08 d7084694-6625-493d-8da5-1d1ba4fd1014 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-01A TCGA-AN-A0FY-01A-11X-A048-08 ea4a936d-9f44-4e32-b221-0b042db2608b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-01A TCGA-AN-A0FY-01A-11X-A049-09 0cd5f1bf-6b15-4463-8190-c28545f26de6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-10A TCGA-AN-A0FY-10A-01D-A031-02 1155b033-98e2-4e81-8230-ea77391bd764 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-10A TCGA-AN-A0FY-10A-01D-A037-01 0c658d9f-0f83-4078-a3c2-f5af437cc427 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-10A TCGA-AN-A0FY-10A-01D-A037-01 0c658d9f-0f83-4078-a3c2-f5af437cc427 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F01_667152.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0FY TCGA-AN-A0FY-10A TCGA-AN-A0FY-10A-01D-A037-01 0c658d9f-0f83-4078-a3c2-f5af437cc427 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F01_667152.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-10A TCGA-AN-A0FY-10A-01D-A037-01 0c658d9f-0f83-4078-a3c2-f5af437cc427 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F01_667152.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-10A TCGA-AN-A0FY-10A-01D-A037-01 0c658d9f-0f83-4078-a3c2-f5af437cc427 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F01_667152.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-10A TCGA-AN-A0FY-10A-01D-A037-01 0c658d9f-0f83-4078-a3c2-f5af437cc427 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F01_667152.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-10A TCGA-AN-A0FY-10A-01D-A037-01 0c658d9f-0f83-4078-a3c2-f5af437cc427 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F01_667152.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-10A TCGA-AN-A0FY-10A-01D-A037-01 0c658d9f-0f83-4078-a3c2-f5af437cc427 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F01_667152.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-10A TCGA-AN-A0FY-10A-01D-A037-01 0c658d9f-0f83-4078-a3c2-f5af437cc427 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F01_667152.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-10A TCGA-AN-A0FY-10A-01D-A046-08 c35580cc-a0d9-4a67-9aea-580ec7f70512 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-10A TCGA-AN-A0FY-10A-01D-A047-09 aa5cbdd2-e1f7-4d59-962a-3362278d401a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-10A TCGA-AN-A0FY-10A-01D-A047-09 aa5cbdd2-e1f7-4d59-962a-3362278d401a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-10A TCGA-AN-A0FY-10A-01W-A053-08 69700884-3ecc-4cd1-abe1-4a1768ced909 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-10A TCGA-AN-A0FY-10A-01W-A055-09 4d949cb7-7cd5-4cf1-a243-da0bd7b14797 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-10A TCGA-AN-A0FY-10A-01X-A052-08 1e424573-d49b-4367-a43e-f3ff3d883582 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FY TCGA-AN-A0FY-10A TCGA-AN-A0FY-10A-01X-A054-09 1854702b-05e5-4bb0-8e3d-71fca1f97546 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-01A TCGA-AN-A0FZ-01A-11D-A032-05 ca684c4f-2c42-4207-9fdd-0bb859c9cf48 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-01A TCGA-AN-A0FZ-01A-11D-A032-05 ca684c4f-2c42-4207-9fdd-0bb859c9cf48 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AN-A0FZ-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-01A TCGA-AN-A0FZ-01A-11D-A032-05 ca684c4f-2c42-4207-9fdd-0bb859c9cf48 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AN-A0FZ-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-01A TCGA-AN-A0FZ-01A-11D-A032-05 ca684c4f-2c42-4207-9fdd-0bb859c9cf48 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AN-A0FZ-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-01A TCGA-AN-A0FZ-01A-11D-A033-02 5dee8c93-7108-406e-80a9-e7962b3226df Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-01A TCGA-AN-A0FZ-01A-11D-A036-01 522b6d2e-b8b1-46d0-b0cb-3823d574e549 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-01A TCGA-AN-A0FZ-01A-11D-A036-01 522b6d2e-b8b1-46d0-b0cb-3823d574e549 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C11_667238.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0FZ TCGA-AN-A0FZ-01A TCGA-AN-A0FZ-01A-11D-A036-01 522b6d2e-b8b1-46d0-b0cb-3823d574e549 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C11_667238.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-01A TCGA-AN-A0FZ-01A-11D-A036-01 522b6d2e-b8b1-46d0-b0cb-3823d574e549 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C11_667238.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-01A TCGA-AN-A0FZ-01A-11D-A036-01 522b6d2e-b8b1-46d0-b0cb-3823d574e549 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C11_667238.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-01A TCGA-AN-A0FZ-01A-11D-A036-01 522b6d2e-b8b1-46d0-b0cb-3823d574e549 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C11_667238.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-01A TCGA-AN-A0FZ-01A-11D-A036-01 522b6d2e-b8b1-46d0-b0cb-3823d574e549 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C11_667238.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-01A TCGA-AN-A0FZ-01A-11D-A036-01 522b6d2e-b8b1-46d0-b0cb-3823d574e549 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C11_667238.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-01A TCGA-AN-A0FZ-01A-11D-A036-01 522b6d2e-b8b1-46d0-b0cb-3823d574e549 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C11_667238.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-01A TCGA-AN-A0FZ-01A-11D-A044-08 07b54154-a4af-4885-a42d-63388d83aa83 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-01A TCGA-AN-A0FZ-01A-11D-A045-09 0f842b6a-9053-4d05-924f-657642755294 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0FZ-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-01A TCGA-AN-A0FZ-01A-11W-A050-09 d77f59f7-8cff-41f3-a1bb-0de14524d4f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-01A TCGA-AN-A0FZ-01A-11W-A050-09 d77f59f7-8cff-41f3-a1bb-0de14524d4f4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-01A TCGA-AN-A0FZ-01A-11W-A050-09 d77f59f7-8cff-41f3-a1bb-0de14524d4f4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-01A TCGA-AN-A0FZ-01A-11W-A051-08 86ce88a3-5942-478e-90ba-54aaf724f1af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-01A TCGA-AN-A0FZ-01A-11X-A048-08 6a13fb3c-e21e-47cd-b3e7-45b4b29c6f28 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-01A TCGA-AN-A0FZ-01A-11X-A049-09 a0c368bd-b434-4a1e-adaa-8710f0ff5c09 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-10A TCGA-AN-A0FZ-10A-01D-A031-02 83f597bd-88dc-4087-a06e-8e1479a49c81 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-10A TCGA-AN-A0FZ-10A-01D-A037-01 eed2ba7d-3f38-4761-ba97-9238151b218a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-10A TCGA-AN-A0FZ-10A-01D-A037-01 eed2ba7d-3f38-4761-ba97-9238151b218a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H03_667186.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0FZ TCGA-AN-A0FZ-10A TCGA-AN-A0FZ-10A-01D-A037-01 eed2ba7d-3f38-4761-ba97-9238151b218a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H03_667186.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-10A TCGA-AN-A0FZ-10A-01D-A037-01 eed2ba7d-3f38-4761-ba97-9238151b218a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H03_667186.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-10A TCGA-AN-A0FZ-10A-01D-A037-01 eed2ba7d-3f38-4761-ba97-9238151b218a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H03_667186.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-10A TCGA-AN-A0FZ-10A-01D-A037-01 eed2ba7d-3f38-4761-ba97-9238151b218a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H03_667186.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-10A TCGA-AN-A0FZ-10A-01D-A037-01 eed2ba7d-3f38-4761-ba97-9238151b218a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H03_667186.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-10A TCGA-AN-A0FZ-10A-01D-A037-01 eed2ba7d-3f38-4761-ba97-9238151b218a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H03_667186.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-10A TCGA-AN-A0FZ-10A-01D-A037-01 eed2ba7d-3f38-4761-ba97-9238151b218a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H03_667186.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-10A TCGA-AN-A0FZ-10A-01D-A046-08 17cf1ed6-49ab-4c6b-a93e-b032c0c469ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-10A TCGA-AN-A0FZ-10A-01D-A047-09 3b0616a4-ce44-4dd0-88e1-72b14e15e759 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-10A TCGA-AN-A0FZ-10A-01W-A053-08 a2f466f8-1792-4e3e-835f-933a153c74b7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-10A TCGA-AN-A0FZ-10A-01W-A055-09 5605aad9-7f20-4db3-9ed8-cae136f5773b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-10A TCGA-AN-A0FZ-10A-01W-A055-09 5605aad9-7f20-4db3-9ed8-cae136f5773b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-10A TCGA-AN-A0FZ-10A-01W-A055-09 5605aad9-7f20-4db3-9ed8-cae136f5773b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-10A TCGA-AN-A0FZ-10A-01X-A052-08 11a51866-cf80-4d81-afaf-51ed7091fdf4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0FZ TCGA-AN-A0FZ-10A TCGA-AN-A0FZ-10A-01X-A054-09 2ec20e43-24b1-4820-a148-f5c0530e3171 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0FZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11D-A032-05 3d8e2c0e-4acf-4f72-a0c5-d274c78c5756 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0G0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11D-A032-05 3d8e2c0e-4acf-4f72-a0c5-d274c78c5756 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AN-A0G0-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11D-A032-05 3d8e2c0e-4acf-4f72-a0c5-d274c78c5756 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AN-A0G0-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11D-A032-05 3d8e2c0e-4acf-4f72-a0c5-d274c78c5756 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AN-A0G0-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11D-A033-02 a07db174-f016-45bd-8a62-33133a10680b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0G0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11D-A036-01 ab6ead94-e5ae-4bfc-bbe3-8ecac5a98a54 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0G0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11D-A036-01 ab6ead94-e5ae-4bfc-bbe3-8ecac5a98a54 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11D-A036-01 ab6ead94-e5ae-4bfc-bbe3-8ecac5a98a54 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11D-A036-01 ab6ead94-e5ae-4bfc-bbe3-8ecac5a98a54 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11D-A036-01 ab6ead94-e5ae-4bfc-bbe3-8ecac5a98a54 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11D-A036-01 ab6ead94-e5ae-4bfc-bbe3-8ecac5a98a54 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11D-A036-01 ab6ead94-e5ae-4bfc-bbe3-8ecac5a98a54 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11D-A036-01 ab6ead94-e5ae-4bfc-bbe3-8ecac5a98a54 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G09_667246.seg.data.txt'. TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11D-A044-08 9dfb86e5-c632-40b4-9a3f-ab3717482586 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0G0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11D-A045-09 73936e8b-c893-4afd-bd1f-be90c06a4869 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0G0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11R-A034-07 c09e8a88-5a82-4fd6-8d03-ef3ecb988003 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0G0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11R-A034-07 c09e8a88-5a82-4fd6-8d03-ef3ecb988003 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012106_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11R-A034-07 c09e8a88-5a82-4fd6-8d03-ef3ecb988003 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012106_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11R-A034-07 c09e8a88-5a82-4fd6-8d03-ef3ecb988003 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012106_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11R-A034-07 c09e8a88-5a82-4fd6-8d03-ef3ecb988003 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_473182.TCGA-AN-A0G0-01A-11R-A034-07.110414_UNC14-SN744_0094_AB07M4ABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11R-A034-07 c09e8a88-5a82-4fd6-8d03-ef3ecb988003 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_473185.TCGA-AN-A0G0-01A-11R-A034-07.110414_UNC14-SN744_0094_AB07M4ABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11R-A034-07 c09e8a88-5a82-4fd6-8d03-ef3ecb988003 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_473210.TCGA-AN-A0G0-01A-11R-A034-07.110414_UNC14-SN744_0094_AB07M4ABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11R-A035-13 bdf34b74-f488-4a99-8ee1-6dad6528b7ca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0G0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11R-A035-13 bdf34b74-f488-4a99-8ee1-6dad6528b7ca miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0G0-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11R-A035-13 bdf34b74-f488-4a99-8ee1-6dad6528b7ca miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0G0-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11W-A050-09 9eb55dd2-a956-4dfe-8631-04722c49819f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0G0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11W-A050-09 9eb55dd2-a956-4dfe-8631-04722c49819f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11W-A050-09 9eb55dd2-a956-4dfe-8631-04722c49819f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11W-A051-08 dcd5ec3d-d20f-44ae-93f9-5385d02e92e5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0G0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11X-A048-08 da7eac18-014f-46b0-abfa-a318990a4c13 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0G0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-01A TCGA-AN-A0G0-01A-11X-A049-09 6527f1c5-ac92-45d2-8c16-0be65bfcfe2a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0G0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-10A TCGA-AN-A0G0-10A-01D-A031-02 d7059ec8-6509-45a8-aee7-81b0b47c4e74 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0G0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-10A TCGA-AN-A0G0-10A-01D-A037-01 0a6c83bd-ea6a-4687-ad8a-9fe6282c5b31 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0G0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-10A TCGA-AN-A0G0-10A-01D-A037-01 0a6c83bd-ea6a-4687-ad8a-9fe6282c5b31 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H06_667222.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AN-A0G0 TCGA-AN-A0G0-10A TCGA-AN-A0G0-10A-01D-A037-01 0a6c83bd-ea6a-4687-ad8a-9fe6282c5b31 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H06_667222.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-10A TCGA-AN-A0G0-10A-01D-A037-01 0a6c83bd-ea6a-4687-ad8a-9fe6282c5b31 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H06_667222.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-10A TCGA-AN-A0G0-10A-01D-A037-01 0a6c83bd-ea6a-4687-ad8a-9fe6282c5b31 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H06_667222.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-10A TCGA-AN-A0G0-10A-01D-A037-01 0a6c83bd-ea6a-4687-ad8a-9fe6282c5b31 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H06_667222.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-10A TCGA-AN-A0G0-10A-01D-A037-01 0a6c83bd-ea6a-4687-ad8a-9fe6282c5b31 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H06_667222.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-10A TCGA-AN-A0G0-10A-01D-A037-01 0a6c83bd-ea6a-4687-ad8a-9fe6282c5b31 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H06_667222.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-10A TCGA-AN-A0G0-10A-01D-A037-01 0a6c83bd-ea6a-4687-ad8a-9fe6282c5b31 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H06_667222.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-10A TCGA-AN-A0G0-10A-01D-A046-08 8a4e28d7-6dbf-4b43-b3fb-2e7e83b424d2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0G0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-10A TCGA-AN-A0G0-10A-01D-A047-09 82968510-ce27-4819-9788-9637753ac772 Complete Clinical Set bio 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1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-10A TCGA-AN-A0G0-10A-01W-A055-09 eb7cc6da-9544-4308-8627-1b4015493c58 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-10A TCGA-AN-A0G0-10A-01W-A055-09 eb7cc6da-9544-4308-8627-1b4015493c58 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-10A TCGA-AN-A0G0-10A-01X-A052-08 c174c6cc-0068-4aa2-b1c0-8a0ad7b89fa1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0G0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0G0 TCGA-AN-A0G0-10A TCGA-AN-A0G0-10A-01X-A054-09 2983b371-6faf-4a3f-8964-a58e7011b9a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0G0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-01A TCGA-AN-A0XL-01A-11D-A10K-02 a40d0c01-56eb-4099-a466-88e710a35c0f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-01A TCGA-AN-A0XL-01A-11D-A10L-01 c73ed584-52f7-4eda-ba8d-cbe2ac0867b7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-01A TCGA-AN-A0XL-01A-11D-A10L-01 c73ed584-52f7-4eda-ba8d-cbe2ac0867b7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H01_734804.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AN-A0XL TCGA-AN-A0XL-01A TCGA-AN-A0XL-01A-11D-A10L-01 c73ed584-52f7-4eda-ba8d-cbe2ac0867b7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H01_734804.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-01A TCGA-AN-A0XL-01A-11D-A10L-01 c73ed584-52f7-4eda-ba8d-cbe2ac0867b7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H01_734804.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-01A TCGA-AN-A0XL-01A-11D-A10L-01 c73ed584-52f7-4eda-ba8d-cbe2ac0867b7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H01_734804.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-01A TCGA-AN-A0XL-01A-11D-A10L-01 c73ed584-52f7-4eda-ba8d-cbe2ac0867b7 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H01_734804.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-01A TCGA-AN-A0XL-01A-11D-A10L-01 c73ed584-52f7-4eda-ba8d-cbe2ac0867b7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H01_734804.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-01A TCGA-AN-A0XL-01A-11D-A10M-09 1b08a181-a73b-4506-aaa3-3521f2c57207 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-01A TCGA-AN-A0XL-01A-11D-A10M-09 1b08a181-a73b-4506-aaa3-3521f2c57207 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-01A TCGA-AN-A0XL-01A-11D-A10N-05 9208c22c-0c3a-4207-9ee6-d81721f3cf23 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-01A TCGA-AN-A0XL-01A-11D-A10N-05 9208c22c-0c3a-4207-9ee6-d81721f3cf23 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486017_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-01A TCGA-AN-A0XL-01A-11D-A10N-05 9208c22c-0c3a-4207-9ee6-d81721f3cf23 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486017_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-01A TCGA-AN-A0XL-01A-11D-A10N-05 9208c22c-0c3a-4207-9ee6-d81721f3cf23 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-AN-A0XL-01A-11D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-01A TCGA-AN-A0XL-01A-11D-A10N-05 9208c22c-0c3a-4207-9ee6-d81721f3cf23 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-AN-A0XL-01A-11D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-01A TCGA-AN-A0XL-01A-11R-A10I-13 b9d78f69-d874-43ad-ab32-4d2f0093ea54 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-01A TCGA-AN-A0XL-01A-11R-A10I-13 b9d78f69-d874-43ad-ab32-4d2f0093ea54 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0XL-01A-11R-A10I-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-01A TCGA-AN-A0XL-01A-11R-A10I-13 b9d78f69-d874-43ad-ab32-4d2f0093ea54 miRNASeq IlluminaGA_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012733_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-01A TCGA-AN-A0XL-01A-11R-A10J-07 0cde4246-2dcb-478b-ace9-df557f71e4cd Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012733_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-01A TCGA-AN-A0XL-01A-11R-A10J-07 0cde4246-2dcb-478b-ace9-df557f71e4cd Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012733_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-01A TCGA-AN-A0XL-01A-11R-A10J-07 0cde4246-2dcb-478b-ace9-df557f71e4cd RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421125.TCGA-AN-A0XL-01A-11R-A10J-07.110606_UNC12-SN629_0090_AD0CTGABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-01A TCGA-AN-A0XL-01A-11R-A10J-07 0cde4246-2dcb-478b-ace9-df557f71e4cd RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421131.TCGA-AN-A0XL-01A-11R-A10J-07.110606_UNC12-SN629_0090_AD0CTGABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-01A TCGA-AN-A0XL-01A-11R-A10J-07 0cde4246-2dcb-478b-ace9-df557f71e4cd RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421163.TCGA-AN-A0XL-01A-11R-A10J-07.110606_UNC12-SN629_0090_AD0CTGABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-01A TCGA-AN-A0XL-01A-11W-A124-09 c3537199-f637-47db-8cdf-4e193746cb0f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-10A TCGA-AN-A0XL-10A-01D-A10K-02 b1db861e-4472-4d9e-bcc3-cd82b9d7388a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-10A TCGA-AN-A0XL-10A-01D-A10L-01 4ba5a29e-f475-4a12-9313-e5b57f420f35 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-10A TCGA-AN-A0XL-10A-01D-A10L-01 4ba5a29e-f475-4a12-9313-e5b57f420f35 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D10_734748.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AN-A0XL TCGA-AN-A0XL-10A TCGA-AN-A0XL-10A-01D-A10L-01 4ba5a29e-f475-4a12-9313-e5b57f420f35 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D10_734748.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-10A TCGA-AN-A0XL-10A-01D-A10L-01 4ba5a29e-f475-4a12-9313-e5b57f420f35 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D10_734748.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-10A TCGA-AN-A0XL-10A-01D-A10L-01 4ba5a29e-f475-4a12-9313-e5b57f420f35 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D10_734748.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-10A TCGA-AN-A0XL-10A-01D-A10L-01 4ba5a29e-f475-4a12-9313-e5b57f420f35 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D10_734748.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-10A TCGA-AN-A0XL-10A-01D-A10L-01 4ba5a29e-f475-4a12-9313-e5b57f420f35 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D10_734748.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-10A TCGA-AN-A0XL-10A-01D-A10L-01 4ba5a29e-f475-4a12-9313-e5b57f420f35 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D10_734748.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-10A TCGA-AN-A0XL-10A-01D-A10L-01 4ba5a29e-f475-4a12-9313-e5b57f420f35 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D10_734748.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-10A TCGA-AN-A0XL-10A-01D-A10M-09 1acce21e-7513-402f-b586-423415f7cc2c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-10A TCGA-AN-A0XL-10A-01D-A10M-09 1acce21e-7513-402f-b586-423415f7cc2c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0XL TCGA-AN-A0XL-10A TCGA-AN-A0XL-10A-01W-A124-09 bd6ad3c9-641a-4544-8843-2d851daf025c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AN-A0XN TCGA-AN-A0XN-01A TCGA-AN-A0XN-01A-21D-A106-02 20081cb2-0be3-4bbb-8b91-2148cbbcc675 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XN TCGA-AN-A0XN-01A TCGA-AN-A0XN-01A-21D-A107-01 109817fb-aa2e-4ac8-8bac-a8c6f0d93551 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XN TCGA-AN-A0XN-01A TCGA-AN-A0XN-01A-21D-A107-01 109817fb-aa2e-4ac8-8bac-a8c6f0d93551 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F10_730956.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-AN-A0XN TCGA-AN-A0XN-01A TCGA-AN-A0XN-01A-21D-A107-01 109817fb-aa2e-4ac8-8bac-a8c6f0d93551 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F10_730956.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XN TCGA-AN-A0XN-01A TCGA-AN-A0XN-01A-21D-A107-01 109817fb-aa2e-4ac8-8bac-a8c6f0d93551 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F10_730956.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XN TCGA-AN-A0XN-01A TCGA-AN-A0XN-01A-21D-A107-01 109817fb-aa2e-4ac8-8bac-a8c6f0d93551 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F10_730956.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XN TCGA-AN-A0XN-01A TCGA-AN-A0XN-01A-21D-A107-01 109817fb-aa2e-4ac8-8bac-a8c6f0d93551 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F10_730956.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XN TCGA-AN-A0XN-01A TCGA-AN-A0XN-01A-21D-A107-01 109817fb-aa2e-4ac8-8bac-a8c6f0d93551 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F10_730956.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XN TCGA-AN-A0XN-01A TCGA-AN-A0XN-01A-21D-A107-01 109817fb-aa2e-4ac8-8bac-a8c6f0d93551 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F10_730956.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XN TCGA-AN-A0XN-01A TCGA-AN-A0XN-01A-21D-A107-01 109817fb-aa2e-4ac8-8bac-a8c6f0d93551 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F10_730956.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-AN-A0XN TCGA-AN-A0XN-01A TCGA-AN-A0XN-01A-21D-A10A-05 f409a269-e37f-4c45-9410-024db948afc4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XN TCGA-AN-A0XN-01A TCGA-AN-A0XN-01A-21D-A10A-05 f409a269-e37f-4c45-9410-024db948afc4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486005_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-AN-A0XN TCGA-AN-A0XN-01A TCGA-AN-A0XN-01A-21D-A10A-05 f409a269-e37f-4c45-9410-024db948afc4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486005_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-AN-A0XN TCGA-AN-A0XN-01A TCGA-AN-A0XN-01A-21D-A10A-05 f409a269-e37f-4c45-9410-024db948afc4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-AN-A0XN-01A-21D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-AN-A0XN TCGA-AN-A0XN-01A TCGA-AN-A0XN-01A-21D-A10A-05 f409a269-e37f-4c45-9410-024db948afc4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-AN-A0XN-01A-21D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-AN-A0XN TCGA-AN-A0XN-01A TCGA-AN-A0XN-01A-21D-A10G-09 94a6c172-25e2-4438-945c-9b310f89ae22 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XN TCGA-AN-A0XN-01A TCGA-AN-A0XN-01A-21D-A10G-09 94a6c172-25e2-4438-945c-9b310f89ae22 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-AN-A0XN TCGA-AN-A0XN-01A TCGA-AN-A0XN-01A-21D-A10G-09 94a6c172-25e2-4438-945c-9b310f89ae22 Somatic Mutations IlluminaGA_DNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_491188.TCGA-AN-A0XN-01A-21R-A109-07.110912_UNC13-SN749_0112_BD0DDTABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0XN TCGA-AN-A0XN-01A TCGA-AN-A0XN-01A-21X-A10H-09 8b118148-7279-41f0-a7ae-c0f4c29ed8cc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XN TCGA-AN-A0XN-10A TCGA-AN-A0XN-10A-01D-A106-02 79fc881a-ca96-4287-8187-5a18d4b0796c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XN TCGA-AN-A0XN-10A TCGA-AN-A0XN-10A-01D-A107-01 6efcc428-d194-4f46-aa98-994b15d9d1f2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XN TCGA-AN-A0XN-10A TCGA-AN-A0XN-10A-01D-A107-01 6efcc428-d194-4f46-aa98-994b15d9d1f2 SNP Genome_Wide_SNP_6 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1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XO TCGA-AN-A0XO-01A TCGA-AN-A0XO-01A-11D-A107-01 20e3c431-7416-49c3-88a0-b59801f6b05d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G01_731008.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-AN-A0XO TCGA-AN-A0XO-01A TCGA-AN-A0XO-01A-11D-A107-01 20e3c431-7416-49c3-88a0-b59801f6b05d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G01_731008.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XO TCGA-AN-A0XO-01A TCGA-AN-A0XO-01A-11D-A107-01 20e3c431-7416-49c3-88a0-b59801f6b05d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G01_731008.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XO TCGA-AN-A0XO-01A TCGA-AN-A0XO-01A-11D-A107-01 20e3c431-7416-49c3-88a0-b59801f6b05d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G01_731008.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XO TCGA-AN-A0XO-01A TCGA-AN-A0XO-01A-11D-A107-01 20e3c431-7416-49c3-88a0-b59801f6b05d SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G01_731008.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XO TCGA-AN-A0XO-01A TCGA-AN-A0XO-01A-11D-A107-01 20e3c431-7416-49c3-88a0-b59801f6b05d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G01_731008.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-AN-A0XO TCGA-AN-A0XO-01A TCGA-AN-A0XO-01A-11D-A10A-05 bbe1c95c-e461-4f9f-a1a2-bd6a5b9b9501 Complete Clinical Set bio 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1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-AN-A0XO TCGA-AN-A0XO-01A TCGA-AN-A0XO-01A-11D-A10A-05 bbe1c95c-e461-4f9f-a1a2-bd6a5b9b9501 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-AN-A0XO-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-AN-A0XO TCGA-AN-A0XO-01A TCGA-AN-A0XO-01A-11D-A10A-05 bbe1c95c-e461-4f9f-a1a2-bd6a5b9b9501 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-AN-A0XO-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-AN-A0XO TCGA-AN-A0XO-01A TCGA-AN-A0XO-01A-11D-A10G-09 f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XO TCGA-AN-A0XO-01A TCGA-AN-A0XO-01A-11D-A10G-09 f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0XO TCGA-AN-A0XO-01A TCGA-AN-A0XO-01A-11R-A108-13 90cd6cc6-eb21-44b4-a6c0-9ec617fdb667 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XO TCGA-AN-A0XO-01A TCGA-AN-A0XO-01A-11R-A108-13 90cd6cc6-eb21-44b4-a6c0-9ec617fdb667 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0XO-01A-11R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0XO TCGA-AN-A0XO-01A TCGA-AN-A0XO-01A-11R-A108-13 90cd6cc6-eb21-44b4-a6c0-9ec617fdb667 miRNASeq IlluminaGA_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XO TCGA-AN-A0XO-10A TCGA-AN-A0XO-10A-01D-A106-02 82186616-a275-4d07-9a62-3e1fe0ba489a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XO TCGA-AN-A0XO-10A TCGA-AN-A0XO-10A-01D-A107-01 6ac8b55a-d38d-4b49-92dd-6567b93a00bf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XO TCGA-AN-A0XO-10A TCGA-AN-A0XO-10A-01D-A107-01 6ac8b55a-d38d-4b49-92dd-6567b93a00bf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G03_731048.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-AN-A0XO TCGA-AN-A0XO-10A TCGA-AN-A0XO-10A-01D-A107-01 6ac8b55a-d38d-4b49-92dd-6567b93a00bf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G03_731048.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XO TCGA-AN-A0XO-10A TCGA-AN-A0XO-10A-01D-A107-01 6ac8b55a-d38d-4b49-92dd-6567b93a00bf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G03_731048.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XO TCGA-AN-A0XO-10A TCGA-AN-A0XO-10A-01D-A107-01 6ac8b55a-d38d-4b49-92dd-6567b93a00bf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G03_731048.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XO TCGA-AN-A0XO-10A TCGA-AN-A0XO-10A-01D-A107-01 6ac8b55a-d38d-4b49-92dd-6567b93a00bf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G03_731048.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XO TCGA-AN-A0XO-10A TCGA-AN-A0XO-10A-01D-A107-01 6ac8b55a-d38d-4b49-92dd-6567b93a00bf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G03_731048.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XO TCGA-AN-A0XO-10A TCGA-AN-A0XO-10A-01D-A107-01 6ac8b55a-d38d-4b49-92dd-6567b93a00bf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G03_731048.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XO TCGA-AN-A0XO-10A TCGA-AN-A0XO-10A-01D-A107-01 6ac8b55a-d38d-4b49-92dd-6567b93a00bf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G03_731048.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-AN-A0XO TCGA-AN-A0XO-10A TCGA-AN-A0XO-10A-01D-A10G-09 ea2d9f54-744b-4e56-bc97-d9492168db87 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XO TCGA-AN-A0XO-10A TCGA-AN-A0XO-10A-01D-A10G-09 ea2d9f54-744b-4e56-bc97-d9492168db87 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0XO TCGA-AN-A0XO-10A TCGA-AN-A0XO-10A-01X-A10H-09 fa104b5c-79c3-4354-8645-4f7a80c9646b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XP TCGA-AN-A0XP-01A TCGA-AN-A0XP-01A-11D-A106-02 82334ae0-f7f8-4675-aa9d-617e24336fdb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XP TCGA-AN-A0XP-01A TCGA-AN-A0XP-01A-11D-A107-01 dd464f65-b905-44a2-8e45-018d58c112c7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B12_730902.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B12_730902.after_5NN.copynumber.data.txt'. TCGA-AN-A0XP TCGA-AN-A0XP-01A TCGA-AN-A0XP-01A-11D-A107-01 dd464f65-b905-44a2-8e45-018d58c112c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B12_730902.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B12_730902.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B12_730902.after_5NN.copynumber.data.txt'. TCGA-AN-A0XP TCGA-AN-A0XP-01A TCGA-AN-A0XP-01A-11D-A107-01 dd464f65-b905-44a2-8e45-018d58c112c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B12_730902.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B12_730902.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B12_730902.after_5NN.copynumber.data.txt'. TCGA-AN-A0XP TCGA-AN-A0XP-01A TCGA-AN-A0XP-01A-11D-A107-01 dd464f65-b905-44a2-8e45-018d58c112c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B12_730902.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B12_730902.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B12_730902.after_5NN.copynumber.data.txt'. TCGA-AN-A0XP TCGA-AN-A0XP-01A TCGA-AN-A0XP-01A-11D-A107-01 dd464f65-b905-44a2-8e45-018d58c112c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B12_730902.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B12_730902.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B12_730902.after_5NN.copynumber.data.txt'. TCGA-AN-A0XP TCGA-AN-A0XP-01A TCGA-AN-A0XP-01A-11D-A107-01 dd464f65-b905-44a2-8e45-018d58c112c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B12_730902.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B12_730902.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B12_730902.after_5NN.copynumber.data.txt'. TCGA-AN-A0XP TCGA-AN-A0XP-01A TCGA-AN-A0XP-01A-11D-A107-01 dd464f65-b905-44a2-8e45-018d58c112c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B12_730902.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B12_730902.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B12_730902.after_5NN.copynumber.data.txt'. TCGA-AN-A0XP TCGA-AN-A0XP-01A TCGA-AN-A0XP-01A-11D-A10A-05 1d087b40-70f0-46bc-a68b-7ff2bd2c33a4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XP TCGA-AN-A0XP-01A TCGA-AN-A0XP-01A-11D-A10A-05 1d087b40-70f0-46bc-a68b-7ff2bd2c33a4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486018_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-AN-A0XP TCGA-AN-A0XP-01A TCGA-AN-A0XP-01A-11D-A10A-05 1d087b40-70f0-46bc-a68b-7ff2bd2c33a4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486018_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-AN-A0XP TCGA-AN-A0XP-01A TCGA-AN-A0XP-01A-11D-A10A-05 1d087b40-70f0-46bc-a68b-7ff2bd2c33a4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-AN-A0XP-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-AN-A0XP TCGA-AN-A0XP-01A TCGA-AN-A0XP-01A-11D-A10A-05 1d087b40-70f0-46bc-a68b-7ff2bd2c33a4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-AN-A0XP-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-AN-A0XP TCGA-AN-A0XP-01A TCGA-AN-A0XP-01A-11D-A10G-09 905de9dc-8dff-4305-8c07-d42a15671e95 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XP TCGA-AN-A0XP-01A TCGA-AN-A0XP-01A-11D-A117-09 6179b498-2cea-4f7a-82a8-b7ec71431ea8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XP TCGA-AN-A0XP-01A TCGA-AN-A0XP-01A-11D-A117-09 6179b498-2cea-4f7a-82a8-b7ec71431ea8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-AN-A0XP TCGA-AN-A0XP-01A TCGA-AN-A0XP-01A-11D-A117-09 6179b498-2cea-4f7a-82a8-b7ec71431ea8 Somatic Mutations IlluminaGA_DNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11D-A107-01 73792381-9fcb-4a9f-b192-9eb30f94a4fa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11D-A107-01 73792381-9fcb-4a9f-b192-9eb30f94a4fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E04_730996.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11D-A107-01 73792381-9fcb-4a9f-b192-9eb30f94a4fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E04_730996.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11D-A107-01 73792381-9fcb-4a9f-b192-9eb30f94a4fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E04_730996.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11D-A107-01 73792381-9fcb-4a9f-b192-9eb30f94a4fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E04_730996.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11D-A107-01 73792381-9fcb-4a9f-b192-9eb30f94a4fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E04_730996.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11D-A107-01 73792381-9fcb-4a9f-b192-9eb30f94a4fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E04_730996.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11D-A107-01 73792381-9fcb-4a9f-b192-9eb30f94a4fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E04_730996.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11D-A107-01 73792381-9fcb-4a9f-b192-9eb30f94a4fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E04_730996.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11D-A10A-05 02b8059b-9095-4f29-a462-c3579b4d36a3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11D-A10A-05 02b8059b-9095-4f29-a462-c3579b4d36a3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486025_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11D-A10A-05 02b8059b-9095-4f29-a462-c3579b4d36a3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486025_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11D-A10A-05 02b8059b-9095-4f29-a462-c3579b4d36a3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-AN-A0XR-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11D-A10A-05 02b8059b-9095-4f29-a462-c3579b4d36a3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-AN-A0XR-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11D-A10G-09 e7dc7492-3a84-49c7-8dea-8f508b53dc40 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11D-A10G-09 e7dc7492-3a84-49c7-8dea-8f508b53dc40 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11R-A108-13 d00308a4-a149-4b41-8e23-d87e68b07434 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11R-A108-13 d00308a4-a149-4b41-8e23-d87e68b07434 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0XR-01A-11R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11R-A108-13 d00308a4-a149-4b41-8e23-d87e68b07434 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0XR-01A-11R-A108-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11R-A109-07 2738d02e-ac2a-4d26-beb6-794f3e11cf88 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11R-A109-07 2738d02e-ac2a-4d26-beb6-794f3e11cf88 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012380_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11R-A109-07 2738d02e-ac2a-4d26-beb6-794f3e11cf88 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012380_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11R-A109-07 2738d02e-ac2a-4d26-beb6-794f3e11cf88 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012380_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11R-A109-07 2738d02e-ac2a-4d26-beb6-794f3e11cf88 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406381.TCGA-AN-A0XR-01A-11R-A109-07.110510_UNC15-SN850_0069_BC015CABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11R-A109-07 2738d02e-ac2a-4d26-beb6-794f3e11cf88 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406392.TCGA-AN-A0XR-01A-11R-A109-07.110510_UNC15-SN850_0069_BC015CABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11R-A109-07 2738d02e-ac2a-4d26-beb6-794f3e11cf88 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406441.TCGA-AN-A0XR-01A-11R-A109-07.110510_UNC15-SN850_0069_BC015CABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-01A TCGA-AN-A0XR-01A-11X-A10H-09 63152676-a6c0-4341-bd9e-d54e9a167117 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-10A TCGA-AN-A0XR-10A-01D-A106-02 6cf6f26a-a115-4189-8b59-0f6ee5f479f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-10A TCGA-AN-A0XR-10A-01D-A107-01 7b48cc22-59b9-4925-9c3a-ba1d1917d3da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-10A TCGA-AN-A0XR-10A-01D-A107-01 7b48cc22-59b9-4925-9c3a-ba1d1917d3da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A09_730954.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-AN-A0XR TCGA-AN-A0XR-10A TCGA-AN-A0XR-10A-01D-A107-01 7b48cc22-59b9-4925-9c3a-ba1d1917d3da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A09_730954.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-10A TCGA-AN-A0XR-10A-01D-A107-01 7b48cc22-59b9-4925-9c3a-ba1d1917d3da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A09_730954.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-10A TCGA-AN-A0XR-10A-01D-A107-01 7b48cc22-59b9-4925-9c3a-ba1d1917d3da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A09_730954.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-10A TCGA-AN-A0XR-10A-01D-A107-01 7b48cc22-59b9-4925-9c3a-ba1d1917d3da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A09_730954.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-10A TCGA-AN-A0XR-10A-01D-A107-01 7b48cc22-59b9-4925-9c3a-ba1d1917d3da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A09_730954.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-10A TCGA-AN-A0XR-10A-01D-A107-01 7b48cc22-59b9-4925-9c3a-ba1d1917d3da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A09_730954.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-10A TCGA-AN-A0XR-10A-01D-A107-01 7b48cc22-59b9-4925-9c3a-ba1d1917d3da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A09_730954.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-AN-A0XR TCGA-AN-A0XR-10A TCGA-AN-A0XR-10A-01D-A10G-09 4066fc82-49ba-4a54-a81c-768ae25e2741 Complete Clinical Set bio 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1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-AN-A0XS TCGA-AN-A0XS-01A TCGA-AN-A0XS-01A-22D-A10A-05 e9f17338-dce7-4c9e-8ce6-17038a9a0f9a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-AN-A0XS-01A-22D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-AN-A0XS TCGA-AN-A0XS-01A TCGA-AN-A0XS-01A-22D-A10A-05 e9f17338-dce7-4c9e-8ce6-17038a9a0f9a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-AN-A0XS-01A-22D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-AN-A0XS TCGA-AN-A0XS-01A TCGA-AN-A0XS-01A-22D-A10G-09 f1b5268d-556f-404f-a956-770df4a1e7aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XS TCGA-AN-A0XS-01A TCGA-AN-A0XS-01A-22D-A10G-09 f1b5268d-556f-404f-a956-770df4a1e7aa Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-AN-A0XS TCGA-AN-A0XS-01A TCGA-AN-A0XS-01A-22D-A10G-09 f1b5268d-556f-404f-a956-770df4a1e7aa Somatic Mutations IlluminaGA_DNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XS TCGA-AN-A0XS-01A TCGA-AN-A0XS-01A-22R-A109-07 b77f4222-9000-4485-8728-8864780ebcb8 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012394_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-AN-A0XS TCGA-AN-A0XS-01A TCGA-AN-A0XS-01A-22R-A109-07 b77f4222-9000-4485-8728-8864780ebcb8 Expression-Genes AgilentG4502A_07_3 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1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-01A TCGA-AN-A0XT-01A-11D-A10A-05 a901b628-1381-42a3-9433-b9bf7254b5ec DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-AN-A0XT-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-01A TCGA-AN-A0XT-01A-11D-A10A-05 a901b628-1381-42a3-9433-b9bf7254b5ec DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-AN-A0XT-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-01A TCGA-AN-A0XT-01A-11D-A10G-09 353d9161-95fd-4bec-abb7-859d9ee19785 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-01A TCGA-AN-A0XT-01A-11D-A10G-09 353d9161-95fd-4bec-abb7-859d9ee19785 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-01A TCGA-AN-A0XT-01A-11R-A108-13 6172750e-91cd-4312-8a69-e229f60e7e08 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-01A TCGA-AN-A0XT-01A-11R-A108-13 6172750e-91cd-4312-8a69-e229f60e7e08 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0XT-01A-11R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-01A TCGA-AN-A0XT-01A-11R-A108-13 6172750e-91cd-4312-8a69-e229f60e7e08 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0XT-01A-11R-A108-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-01A TCGA-AN-A0XT-01A-11R-A109-07 21f22460-fac7-4dbc-8ab2-75738331cb5c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-01A TCGA-AN-A0XT-01A-11R-A109-07 21f22460-fac7-4dbc-8ab2-75738331cb5c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012684_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-01A TCGA-AN-A0XT-01A-11R-A109-07 21f22460-fac7-4dbc-8ab2-75738331cb5c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012684_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-01A TCGA-AN-A0XT-01A-11R-A109-07 21f22460-fac7-4dbc-8ab2-75738331cb5c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012684_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-01A TCGA-AN-A0XT-01A-11R-A109-07 21f22460-fac7-4dbc-8ab2-75738331cb5c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_491197.TCGA-AN-A0XT-01A-11R-A109-07.110912_UNC13-SN749_0112_BD0DDTABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-01A TCGA-AN-A0XT-01A-11R-A109-07 21f22460-fac7-4dbc-8ab2-75738331cb5c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_491210.TCGA-AN-A0XT-01A-11R-A109-07.110912_UNC13-SN749_0112_BD0DDTABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-01A TCGA-AN-A0XT-01A-11R-A109-07 21f22460-fac7-4dbc-8ab2-75738331cb5c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_491231.TCGA-AN-A0XT-01A-11R-A109-07.110912_UNC13-SN749_0112_BD0DDTABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-01A TCGA-AN-A0XT-01A-11X-A10H-09 a0c21132-df29-4762-abb1-0849df54a905 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-10A TCGA-AN-A0XT-10A-01D-A106-02 9a92e9a1-4631-441b-9153-f8b475dd970c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-10A TCGA-AN-A0XT-10A-01D-A107-01 22f5e5b2-cc7c-488c-bc3b-d49993e8c3df Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-10A TCGA-AN-A0XT-10A-01D-A107-01 22f5e5b2-cc7c-488c-bc3b-d49993e8c3df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B02_731052.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-AN-A0XT TCGA-AN-A0XT-10A TCGA-AN-A0XT-10A-01D-A107-01 22f5e5b2-cc7c-488c-bc3b-d49993e8c3df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B02_731052.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-10A TCGA-AN-A0XT-10A-01D-A107-01 22f5e5b2-cc7c-488c-bc3b-d49993e8c3df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B02_731052.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-10A TCGA-AN-A0XT-10A-01D-A107-01 22f5e5b2-cc7c-488c-bc3b-d49993e8c3df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B02_731052.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-10A TCGA-AN-A0XT-10A-01D-A107-01 22f5e5b2-cc7c-488c-bc3b-d49993e8c3df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B02_731052.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-10A TCGA-AN-A0XT-10A-01D-A107-01 22f5e5b2-cc7c-488c-bc3b-d49993e8c3df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B02_731052.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-10A TCGA-AN-A0XT-10A-01D-A107-01 22f5e5b2-cc7c-488c-bc3b-d49993e8c3df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B02_731052.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-10A TCGA-AN-A0XT-10A-01D-A107-01 22f5e5b2-cc7c-488c-bc3b-d49993e8c3df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B02_731052.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-10A TCGA-AN-A0XT-10A-01D-A10G-09 447c5906-5e0a-48f1-acaf-80ea46081efd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-10A TCGA-AN-A0XT-10A-01D-A10G-09 447c5906-5e0a-48f1-acaf-80ea46081efd Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-10A TCGA-AN-A0XT-10A-01D-A117-09 10994b10-eff0-452f-b649-1e5d0d19734b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XT TCGA-AN-A0XT-10A TCGA-AN-A0XT-10A-01X-A10H-09 ee8e3400-aacc-4db0-84d9-283ff0a4d9cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-01A TCGA-AN-A0XU-01A-11D-A106-02 abb7a1e9-8848-4c7a-a958-785ec609761e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-01A TCGA-AN-A0XU-01A-11D-A107-01 150ed41d-ca97-413a-ae3e-4cc3ba52d6f1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-01A TCGA-AN-A0XU-01A-11D-A107-01 150ed41d-ca97-413a-ae3e-4cc3ba52d6f1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F06_731092.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-AN-A0XU TCGA-AN-A0XU-01A TCGA-AN-A0XU-01A-11D-A107-01 150ed41d-ca97-413a-ae3e-4cc3ba52d6f1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F06_731092.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-01A TCGA-AN-A0XU-01A-11D-A107-01 150ed41d-ca97-413a-ae3e-4cc3ba52d6f1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F06_731092.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-01A TCGA-AN-A0XU-01A-11D-A107-01 150ed41d-ca97-413a-ae3e-4cc3ba52d6f1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F06_731092.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-01A TCGA-AN-A0XU-01A-11D-A107-01 150ed41d-ca97-413a-ae3e-4cc3ba52d6f1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F06_731092.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-01A TCGA-AN-A0XU-01A-11D-A107-01 150ed41d-ca97-413a-ae3e-4cc3ba52d6f1 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F06_731092.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-01A TCGA-AN-A0XU-01A-11D-A10A-05 c94371e3-afa4-4e70-b393-f903dab3c726 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-01A TCGA-AN-A0XU-01A-11D-A10A-05 c94371e3-afa4-4e70-b393-f903dab3c726 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-01A TCGA-AN-A0XU-01A-11D-A10G-09 537c5818-eb89-4b46-8915-2bb2b9e4545f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-01A TCGA-AN-A0XU-01A-11D-A117-09 77bba35a-e786-4122-a4ae-5a97cf789c5d Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0XU-01A-11R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-01A TCGA-AN-A0XU-01A-11R-A108-13 194383d0-5b70-4eda-bfc6-101290bcfdc3 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0XU-01A-11R-A108-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-01A TCGA-AN-A0XU-01A-11R-A109-07 74cba80b-7677-41d6-ab22-10f1a962ba2f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-01A TCGA-AN-A0XU-01A-11R-A109-07 74cba80b-7677-41d6-ab22-10f1a962ba2f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012689_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-01A TCGA-AN-A0XU-01A-11R-A109-07 74cba80b-7677-41d6-ab22-10f1a962ba2f Expression-Genes AgilentG4502A_07_3 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_491229.TCGA-AN-A0XU-01A-11R-A109-07.110912_UNC13-SN749_0112_BD0DDTABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-01A TCGA-AN-A0XU-01A-11R-A109-07 74cba80b-7677-41d6-ab22-10f1a962ba2f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_491234.TCGA-AN-A0XU-01A-11R-A109-07.110912_UNC13-SN749_0112_BD0DDTABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-01A TCGA-AN-A0XU-01A-11R-A109-07 74cba80b-7677-41d6-ab22-10f1a962ba2f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_491246.TCGA-AN-A0XU-01A-11R-A109-07.110912_UNC13-SN749_0112_BD0DDTABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-01A TCGA-AN-A0XU-01A-11X-A10H-09 de91ff56-984d-4ece-bf12-3503e86f0bca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-10A TCGA-AN-A0XU-10A-01D-A106-02 3eba6e63-cb70-4f99-b67a-7ee06041c809 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-10A TCGA-AN-A0XU-10A-01D-A107-01 df002e2c-e877-4174-a18c-92fc32073b02 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-10A TCGA-AN-A0XU-10A-01D-A107-01 df002e2c-e877-4174-a18c-92fc32073b02 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D05_730984.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-AN-A0XU TCGA-AN-A0XU-10A TCGA-AN-A0XU-10A-01D-A107-01 df002e2c-e877-4174-a18c-92fc32073b02 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D05_730984.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-10A TCGA-AN-A0XU-10A-01D-A107-01 df002e2c-e877-4174-a18c-92fc32073b02 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D05_730984.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-10A TCGA-AN-A0XU-10A-01D-A107-01 df002e2c-e877-4174-a18c-92fc32073b02 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D05_730984.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-10A TCGA-AN-A0XU-10A-01D-A107-01 df002e2c-e877-4174-a18c-92fc32073b02 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D05_730984.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-10A TCGA-AN-A0XU-10A-01D-A107-01 df002e2c-e877-4174-a18c-92fc32073b02 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D05_730984.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-10A TCGA-AN-A0XU-10A-01D-A107-01 df002e2c-e877-4174-a18c-92fc32073b02 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D05_730984.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-10A TCGA-AN-A0XU-10A-01D-A107-01 df002e2c-e877-4174-a18c-92fc32073b02 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D05_730984.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-AN-A0XU TCGA-AN-A0XU-10A TCGA-AN-A0XU-10A-01D-A10G-09 0c389ec9-719e-4bcb-96f2-9889efd47a4a Complete Clinical Set bio 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1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XV TCGA-AN-A0XV-01A TCGA-AN-A0XV-01A-11D-A107-01 7754e179-0e81-431d-926e-c24be0e6b4e1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F08_730918.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-AN-A0XV TCGA-AN-A0XV-01A TCGA-AN-A0XV-01A-11D-A107-01 7754e179-0e81-431d-926e-c24be0e6b4e1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F08_730918.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XV TCGA-AN-A0XV-01A TCGA-AN-A0XV-01A-11D-A107-01 7754e179-0e81-431d-926e-c24be0e6b4e1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F08_730918.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XV TCGA-AN-A0XV-01A TCGA-AN-A0XV-01A-11D-A107-01 7754e179-0e81-431d-926e-c24be0e6b4e1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F08_730918.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XV TCGA-AN-A0XV-01A TCGA-AN-A0XV-01A-11D-A107-01 7754e179-0e81-431d-926e-c24be0e6b4e1 SNP Genome_Wide_SNP_6 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1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-AN-A0XV TCGA-AN-A0XV-01A TCGA-AN-A0XV-01A-11D-A10A-05 e9300eb1-463e-4106-bc96-69211bbc6cad DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-AN-A0XV-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-AN-A0XV TCGA-AN-A0XV-01A TCGA-AN-A0XV-01A-11D-A10A-05 e9300eb1-463e-4106-bc96-69211bbc6cad DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-AN-A0XV-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-AN-A0XV TCGA-AN-A0XV-01A TCGA-AN-A0XV-01A-11D-A10G-09 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XV TCGA-AN-A0XV-01A TCGA-AN-A0XV-01A-11D-A10G-09 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-AN-A0XV TCGA-AN-A0XV-01A TCGA-AN-A0XV-01A-11D-A10G-09 6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e Somatic Mutations IlluminaGA_DNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XV TCGA-AN-A0XV-01A TCGA-AN-A0XV-01A-11R-A108-13 15ca82f1-5bf3-40b3-9632-bca186919fa8 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0XV-01A-11R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0XV TCGA-AN-A0XV-01A TCGA-AN-A0XV-01A-11R-A108-13 15ca82f1-5bf3-40b3-9632-bca186919fa8 miRNASeq IlluminaGA_miRNASeq 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1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XV TCGA-AN-A0XV-10A TCGA-AN-A0XV-10A-01D-A107-01 5d85583c-7f03-4dd2-8f0b-dab80d9e791c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B05_731084.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-AN-A0XV TCGA-AN-A0XV-10A TCGA-AN-A0XV-10A-01D-A107-01 5d85583c-7f03-4dd2-8f0b-dab80d9e791c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B05_731084.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XV TCGA-AN-A0XV-10A TCGA-AN-A0XV-10A-01D-A107-01 5d85583c-7f03-4dd2-8f0b-dab80d9e791c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B05_731084.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XV TCGA-AN-A0XV-10A TCGA-AN-A0XV-10A-01D-A107-01 5d85583c-7f03-4dd2-8f0b-dab80d9e791c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B05_731084.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XV TCGA-AN-A0XV-10A TCGA-AN-A0XV-10A-01D-A107-01 5d85583c-7f03-4dd2-8f0b-dab80d9e791c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B05_731084.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XV TCGA-AN-A0XV-10A TCGA-AN-A0XV-10A-01D-A107-01 5d85583c-7f03-4dd2-8f0b-dab80d9e791c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B05_731084.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XV TCGA-AN-A0XV-10A TCGA-AN-A0XV-10A-01D-A107-01 5d85583c-7f03-4dd2-8f0b-dab80d9e791c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B05_731084.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XV TCGA-AN-A0XV-10A TCGA-AN-A0XV-10A-01D-A107-01 5d85583c-7f03-4dd2-8f0b-dab80d9e791c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B05_731084.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-AN-A0XV TCGA-AN-A0XV-10A TCGA-AN-A0XV-10A-01D-A10G-09 ad602351-e61a-4469-97b0-fedfa3320fdf Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0XV TCGA-AN-A0XV-10A TCGA-AN-A0XV-10A-01X-A10H-09 bed5b2ee-0eb1-428b-b42d-94849461d04e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11D-A106-02 101c7232-8cd9-45a0-8c1f-c066df791f84 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11D-A107-01 742b1f3f-a199-4dac-8d56-82db36855633 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11D-A107-01 742b1f3f-a199-4dac-8d56-82db36855633 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D11_730968.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11D-A107-01 742b1f3f-a199-4dac-8d56-82db36855633 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D11_730968.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11D-A107-01 742b1f3f-a199-4dac-8d56-82db36855633 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D11_730968.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11D-A107-01 742b1f3f-a199-4dac-8d56-82db36855633 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D11_730968.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11D-A107-01 742b1f3f-a199-4dac-8d56-82db36855633 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D11_730968.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11D-A107-01 742b1f3f-a199-4dac-8d56-82db36855633 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D11_730968.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11D-A107-01 742b1f3f-a199-4dac-8d56-82db36855633 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D11_730968.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11D-A107-01 742b1f3f-a199-4dac-8d56-82db36855633 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D11_730968.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11D-A10A-05 a9efede5-7d52-4618-bd08-54109d279dec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11D-A10A-05 a9efede5-7d52-4618-bd08-54109d279dec DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486005_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11D-A10A-05 a9efede5-7d52-4618-bd08-54109d279dec DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486005_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11D-A10A-05 a9efede5-7d52-4618-bd08-54109d279dec DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-AN-A0XW-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11D-A10A-05 a9efede5-7d52-4618-bd08-54109d279dec DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-AN-A0XW-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11D-A10G-09 200dba9e-201b-4634-a2cf-666e1f6710dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11D-A10G-09 200dba9e-201b-4634-a2cf-666e1f6710dc Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11D-A10G-09 200dba9e-201b-4634-a2cf-666e1f6710dc Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11R-A108-13 7b77c63e-a61c-4dee-9b6b-b4ec2d56d45a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11R-A108-13 7b77c63e-a61c-4dee-9b6b-b4ec2d56d45a miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0XW-01A-11R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11R-A108-13 7b77c63e-a61c-4dee-9b6b-b4ec2d56d45a miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AN-A0XW-01A-11R-A108-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11R-A109-07 52033f64-1e6f-4657-a4fb-7cfeffc61951 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11R-A109-07 52033f64-1e6f-4657-a4fb-7cfeffc61951 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012311_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11R-A109-07 52033f64-1e6f-4657-a4fb-7cfeffc61951 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012311_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11R-A109-07 52033f64-1e6f-4657-a4fb-7cfeffc61951 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012311_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11R-A109-07 52033f64-1e6f-4657-a4fb-7cfeffc61951 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_491179.TCGA-AN-A0XW-01A-11R-A109-07.110912_UNC13-SN749_0112_BD0DDTABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11R-A109-07 52033f64-1e6f-4657-a4fb-7cfeffc61951 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_491187.TCGA-AN-A0XW-01A-11R-A109-07.110912_UNC13-SN749_0112_BD0DDTABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11R-A109-07 52033f64-1e6f-4657-a4fb-7cfeffc61951 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_491211.TCGA-AN-A0XW-01A-11R-A109-07.110912_UNC13-SN749_0112_BD0DDTABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-01A TCGA-AN-A0XW-01A-11X-A10H-09 38387814-104d-461e-bf08-747ae9098ab8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-10A TCGA-AN-A0XW-10A-01D-A106-02 2f9d5797-3051-4b60-8da0-e03e944bce86 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-10A TCGA-AN-A0XW-10A-01D-A107-01 a9b81daa-0f0b-450a-b02b-b936bddb95e2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A05_731058.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A05_731058.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A05_731058.ismpolish.data.txt'. TCGA-AN-A0XW TCGA-AN-A0XW-10A TCGA-AN-A0XW-10A-01D-A107-01 a9b81daa-0f0b-450a-b02b-b936bddb95e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A05_731058.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A05_731058.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A05_731058.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A05_731058.ismpolish.data.txt'. TCGA-AN-A0XW TCGA-AN-A0XW-10A TCGA-AN-A0XW-10A-01D-A10G-09 42b25d03-4d22-4b23-82a5-4369aa21c4a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-10A TCGA-AN-A0XW-10A-01D-A10G-09 42b25d03-4d22-4b23-82a5-4369aa21c4a1 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-10A TCGA-AN-A0XW-10A-01D-A10G-09 42b25d03-4d22-4b23-82a5-4369aa21c4a1 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-AN-A0XW TCGA-AN-A0XW-10A TCGA-AN-A0XW-10A-01X-A10H-09 8b8e1739-72cf-44fc-a6b2-cf98ae71af93 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AN-A0XW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41D-A058-05 181aee04-5d3f-4f78-a2da-0029d65c4672 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41D-A059-01 c5f3f2c3-0c41-4b3d-91d5-767a54746db9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41D-A059-01 c5f3f2c3-0c41-4b3d-91d5-767a54746db9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C01_697154.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41D-A059-01 c5f3f2c3-0c41-4b3d-91d5-767a54746db9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C01_697154.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41D-A059-01 c5f3f2c3-0c41-4b3d-91d5-767a54746db9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C01_697154.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41D-A059-01 c5f3f2c3-0c41-4b3d-91d5-767a54746db9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C01_697154.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41D-A059-01 c5f3f2c3-0c41-4b3d-91d5-767a54746db9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C01_697154.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41D-A059-01 c5f3f2c3-0c41-4b3d-91d5-767a54746db9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C01_697154.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41D-A059-01 c5f3f2c3-0c41-4b3d-91d5-767a54746db9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C01_697154.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41D-A059-01 c5f3f2c3-0c41-4b3d-91d5-767a54746db9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C01_697154.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41D-A060-02 ee7d7a47-9c67-4877-82e5-e2da5d959a46 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41D-A074-08 be3b3d21-4ae9-4bf5-aa6b-a307f6560cde Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41D-A075-09 63e07356-bddb-487a-8ff8-81a9be0c7dc8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41D-A10P-05 8673cdeb-28a6-4ef3-a6f6-1ce655c22282 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41D-A10P-05 8673cdeb-28a6-4ef3-a6f6-1ce655c22282 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486021_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41D-A10P-05 8673cdeb-28a6-4ef3-a6f6-1ce655c22282 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486021_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41D-A10P-05 8673cdeb-28a6-4ef3-a6f6-1ce655c22282 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-AO-A03L-01A-41D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41D-A10P-05 8673cdeb-28a6-4ef3-a6f6-1ce655c22282 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-AO-A03L-01A-41D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41D-A19H-09 8f558713-f32b-403b-aedf-c79efeb41c67 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41R-A056-07 34980e1d-956b-4d89-8bf2-dcc008dbaad7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41R-A056-07 34980e1d-956b-4d89-8bf2-dcc008dbaad7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012154_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41R-A056-07 34980e1d-956b-4d89-8bf2-dcc008dbaad7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012154_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41R-A056-07 34980e1d-956b-4d89-8bf2-dcc008dbaad7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012154_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41R-A056-07 34980e1d-956b-4d89-8bf2-dcc008dbaad7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478224.TCGA-AO-A03L-01A-41R-A056-07.110318_SN749_0047_BB039EABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41R-A056-07 34980e1d-956b-4d89-8bf2-dcc008dbaad7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478247.TCGA-AO-A03L-01A-41R-A056-07.110318_SN749_0047_BB039EABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41R-A056-07 34980e1d-956b-4d89-8bf2-dcc008dbaad7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478326.TCGA-AO-A03L-01A-41R-A056-07.110318_SN749_0047_BB039EABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41R-A057-13 fb7757bf-3095-4e69-9923-69f43e866abd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41R-A057-13 fb7757bf-3095-4e69-9923-69f43e866abd miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A03L-01A-41R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41R-A057-13 fb7757bf-3095-4e69-9923-69f43e866abd miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A03L-01A-41R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41W-A070-08 513c542f-ec09-4b9d-95a3-a98abf81acb4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41W-A071-09 743a29c4-e1cc-457a-8406-765f1a1bc114 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41W-A071-09 743a29c4-e1cc-457a-8406-765f1a1bc114 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41X-A072-08 8c63c812-982f-48ee-a1bf-40a6b8137263 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A03L TCGA-AO-A03L-01A TCGA-AO-A03L-01A-41X-A073-09 5992be78-d246-4750-a791-37be9ca31e08 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A03L TCGA-AO-A03L-10A TCGA-AO-A03L-10A-01D-A059-01 df489d0d-e2d4-490c-9cd2-ea250941e8bf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A03L TCGA-AO-A03L-10A TCGA-AO-A03L-10A-01D-A059-01 df489d0d-e2d4-490c-9cd2-ea250941e8bf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F02_697020.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-AO-A03L TCGA-AO-A03L-10A TCGA-AO-A03L-10A-01D-A059-01 df489d0d-e2d4-490c-9cd2-ea250941e8bf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F02_697020.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A03L TCGA-AO-A03L-10A TCGA-AO-A03L-10A-01D-A059-01 df489d0d-e2d4-490c-9cd2-ea250941e8bf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F02_697020.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A03L TCGA-AO-A03L-10A TCGA-AO-A03L-10A-01D-A059-01 df489d0d-e2d4-490c-9cd2-ea250941e8bf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F02_697020.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A03L TCGA-AO-A03L-10A TCGA-AO-A03L-10A-01D-A059-01 df489d0d-e2d4-490c-9cd2-ea250941e8bf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F02_697020.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A03L TCGA-AO-A03L-10A TCGA-AO-A03L-10A-01D-A059-01 df489d0d-e2d4-490c-9cd2-ea250941e8bf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F02_697020.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A03L TCGA-AO-A03L-10A TCGA-AO-A03L-10A-01D-A059-01 df489d0d-e2d4-490c-9cd2-ea250941e8bf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F02_697020.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A03L TCGA-AO-A03L-10A TCGA-AO-A03L-10A-01D-A059-01 df489d0d-e2d4-490c-9cd2-ea250941e8bf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F02_697020.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-AO-A03L TCGA-AO-A03L-10A TCGA-AO-A03L-10A-01D-A060-02 5e259ab6-ae4b-427e-9adf-b05f79877141 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A03L TCGA-AO-A03L-10A TCGA-AO-A03L-10A-01D-A074-08 e18689fd-a8d2-4843-a27b-0ae4ef8733fb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A03L TCGA-AO-A03L-10A TCGA-AO-A03L-10A-01D-A075-09 26ff04fc-9cee-4831-a668-dc44dc51ee58 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A03L TCGA-AO-A03L-10A TCGA-AO-A03L-10A-01D-A19H-09 ea97b47f-1e01-42c0-ae0a-6e961e665c5e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A03L TCGA-AO-A03L-10A TCGA-AO-A03L-10A-01W-A070-08 304b0711-6244-46c7-8017-fa872adff99f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A03L TCGA-AO-A03L-10A TCGA-AO-A03L-10A-01W-A071-09 678ca994-371f-4329-81c7-17b93fd4ba0c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A03L TCGA-AO-A03L-10A TCGA-AO-A03L-10A-01W-A071-09 678ca994-371f-4329-81c7-17b93fd4ba0c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A03L TCGA-AO-A03L-10A TCGA-AO-A03L-10A-01X-A072-08 d871b921-37e2-4c0f-8b4a-64329843d419 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A03L TCGA-AO-A03L-10A TCGA-AO-A03L-10A-01X-A073-09 6a646586-ffdb-4a99-8b0f-f1b5bed27754 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11D-A10K-02 92cbf633-299a-41ca-8203-de1feeeac1e6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11D-A10L-01 1d26df40-c4fd-4609-8f7d-a7ad6c39ea1e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11D-A10L-01 1d26df40-c4fd-4609-8f7d-a7ad6c39ea1e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E04_734740.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11D-A10L-01 1d26df40-c4fd-4609-8f7d-a7ad6c39ea1e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E04_734740.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11D-A10L-01 1d26df40-c4fd-4609-8f7d-a7ad6c39ea1e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E04_734740.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11D-A10L-01 1d26df40-c4fd-4609-8f7d-a7ad6c39ea1e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E04_734740.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11D-A10L-01 1d26df40-c4fd-4609-8f7d-a7ad6c39ea1e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E04_734740.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11D-A10L-01 1d26df40-c4fd-4609-8f7d-a7ad6c39ea1e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E04_734740.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11D-A10L-01 1d26df40-c4fd-4609-8f7d-a7ad6c39ea1e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E04_734740.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11D-A10L-01 1d26df40-c4fd-4609-8f7d-a7ad6c39ea1e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E04_734740.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11D-A10M-09 e641d5f2-b91b-45d8-94a6-73c965c90e0c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11D-A10N-05 c440f862-8589-4cd6-adef-19166ee3b016 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11D-A10N-05 c440f862-8589-4cd6-adef-19166ee3b016 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486017_R05C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11D-A10N-05 c440f862-8589-4cd6-adef-19166ee3b016 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486017_R05C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11D-A10N-05 c440f862-8589-4cd6-adef-19166ee3b016 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-AO-A03M-01B-11D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11D-A10N-05 c440f862-8589-4cd6-adef-19166ee3b016 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-AO-A03M-01B-11D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11R-A10I-13 4e372f0a-c2fb-43c0-acf2-269da18103b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11R-A10I-13 4e372f0a-c2fb-43c0-acf2-269da18103b9 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A03M-01B-11R-A10I-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11R-A10I-13 4e372f0a-c2fb-43c0-acf2-269da18103b9 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A03M-01B-11R-A10I-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11R-A10J-07 f65936bc-02d6-4954-9068-0fb7c930d685 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11R-A10J-07 f65936bc-02d6-4954-9068-0fb7c930d685 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012718_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11R-A10J-07 f65936bc-02d6-4954-9068-0fb7c930d685 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012718_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11R-A10J-07 f65936bc-02d6-4954-9068-0fb7c930d685 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012718_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11R-A10J-07 f65936bc-02d6-4954-9068-0fb7c930d685 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441265.TCGA-AO-A03M-01B-11R-A10J-07.110511_UNC11-SN627_0084_AC02M9ABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11R-A10J-07 f65936bc-02d6-4954-9068-0fb7c930d685 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441280.TCGA-AO-A03M-01B-11R-A10J-07.110511_UNC11-SN627_0084_AC02M9ABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11R-A10J-07 f65936bc-02d6-4954-9068-0fb7c930d685 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441431.TCGA-AO-A03M-01B-11R-A10J-07.110511_UNC11-SN627_0084_AC02M9ABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A03M TCGA-AO-A03M-01B TCGA-AO-A03M-01B-11W-A124-09 4d215e0b-ad86-4c6f-97e9-db32b9e7033a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03M TCGA-AO-A03M-10A TCGA-AO-A03M-10A-01D-A10K-02 fa48620e-b0df-4937-85a0-60c2e55ade5e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03M TCGA-AO-A03M-10A TCGA-AO-A03M-10A-01D-A10L-01 878f1a55-e142-46df-95d2-00ed10036fc9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03M TCGA-AO-A03M-10A TCGA-AO-A03M-10A-01D-A10L-01 878f1a55-e142-46df-95d2-00ed10036fc9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D05_734626.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AO-A03M TCGA-AO-A03M-10A TCGA-AO-A03M-10A-01D-A10L-01 878f1a55-e142-46df-95d2-00ed10036fc9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D05_734626.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03M TCGA-AO-A03M-10A TCGA-AO-A03M-10A-01D-A10L-01 878f1a55-e142-46df-95d2-00ed10036fc9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D05_734626.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03M TCGA-AO-A03M-10A TCGA-AO-A03M-10A-01D-A10L-01 878f1a55-e142-46df-95d2-00ed10036fc9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D05_734626.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03M TCGA-AO-A03M-10A TCGA-AO-A03M-10A-01D-A10L-01 878f1a55-e142-46df-95d2-00ed10036fc9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D05_734626.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03M TCGA-AO-A03M-10A TCGA-AO-A03M-10A-01D-A10L-01 878f1a55-e142-46df-95d2-00ed10036fc9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D05_734626.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03M TCGA-AO-A03M-10A TCGA-AO-A03M-10A-01D-A10L-01 878f1a55-e142-46df-95d2-00ed10036fc9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D05_734626.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03M TCGA-AO-A03M-10A TCGA-AO-A03M-10A-01D-A10L-01 878f1a55-e142-46df-95d2-00ed10036fc9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D05_734626.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AO-A03M TCGA-AO-A03M-10A TCGA-AO-A03M-10A-01D-A10M-09 8a65e562-4ed9-4ae2-8bd2-446bca056f48 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03M TCGA-AO-A03M-10A TCGA-AO-A03M-10A-01W-A124-09 2f3755dd-96e6-4805-b87f-3ea0b6c49da5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11D-A10K-02 25c35f87-a586-4749-bb10-b0eafab6b225 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11D-A10L-01 b721638f-668e-4118-b704-04e85f308aa3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11D-A10L-01 b721638f-668e-4118-b704-04e85f308aa3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E05_734738.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11D-A10L-01 b721638f-668e-4118-b704-04e85f308aa3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E05_734738.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11D-A10L-01 b721638f-668e-4118-b704-04e85f308aa3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E05_734738.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11D-A10L-01 b721638f-668e-4118-b704-04e85f308aa3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E05_734738.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11D-A10L-01 b721638f-668e-4118-b704-04e85f308aa3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E05_734738.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11D-A10L-01 b721638f-668e-4118-b704-04e85f308aa3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E05_734738.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11D-A10L-01 b721638f-668e-4118-b704-04e85f308aa3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E05_734738.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11D-A10L-01 b721638f-668e-4118-b704-04e85f308aa3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E05_734738.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11D-A10M-09 ef5987f1-46ac-430a-b94a-49afa0e286d4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11D-A10M-09 ef5987f1-46ac-430a-b94a-49afa0e286d4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11D-A10N-05 c739a94e-08ae-4e84-b7cc-aade77f804e9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11D-A10N-05 c739a94e-08ae-4e84-b7cc-aade77f804e9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486012_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11D-A10N-05 c739a94e-08ae-4e84-b7cc-aade77f804e9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486012_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11D-A10N-05 c739a94e-08ae-4e84-b7cc-aade77f804e9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-AO-A03N-01B-11D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11D-A10N-05 c739a94e-08ae-4e84-b7cc-aade77f804e9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-AO-A03N-01B-11D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11D-A19H-09 f8f749b7-547d-49fa-9da2-44eed962b6fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11R-A10I-13 fc0e7bbd-3099-4e2e-bd38-a3d991ce0f7f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11R-A10I-13 fc0e7bbd-3099-4e2e-bd38-a3d991ce0f7f miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A03N-01B-11R-A10I-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11R-A10I-13 fc0e7bbd-3099-4e2e-bd38-a3d991ce0f7f miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A03N-01B-11R-A10I-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11R-A10J-07 ef37a73c-e0a0-4ff6-83a3-6befcdcb51c6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11R-A10J-07 ef37a73c-e0a0-4ff6-83a3-6befcdcb51c6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012722_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11R-A10J-07 ef37a73c-e0a0-4ff6-83a3-6befcdcb51c6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012722_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11R-A10J-07 ef37a73c-e0a0-4ff6-83a3-6befcdcb51c6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012722_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11R-A10J-07 ef37a73c-e0a0-4ff6-83a3-6befcdcb51c6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439672.TCGA-AO-A03N-01B-11R-A10J-07.110511_UNC11-SN627_0084_AC02M9ABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11R-A10J-07 ef37a73c-e0a0-4ff6-83a3-6befcdcb51c6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439706.TCGA-AO-A03N-01B-11R-A10J-07.110511_UNC11-SN627_0084_AC02M9ABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11R-A10J-07 ef37a73c-e0a0-4ff6-83a3-6befcdcb51c6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439746.TCGA-AO-A03N-01B-11R-A10J-07.110511_UNC11-SN627_0084_AC02M9ABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A03N TCGA-AO-A03N-01B TCGA-AO-A03N-01B-11W-A124-09 30854c27-e9d7-4e37-8a8d-6e9787530344 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03N TCGA-AO-A03N-10A TCGA-AO-A03N-10A-01D-A10K-02 201a26a0-d61d-4a9e-8156-d2dd5b99ff6f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03N TCGA-AO-A03N-10A TCGA-AO-A03N-10A-01D-A10L-01 ec4b1048-4c85-4c6c-b257-ca53ea89d00c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03N TCGA-AO-A03N-10A TCGA-AO-A03N-10A-01D-A10L-01 ec4b1048-4c85-4c6c-b257-ca53ea89d00c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_A12_734734.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AO-A03N TCGA-AO-A03N-10A TCGA-AO-A03N-10A-01D-A10L-01 ec4b1048-4c85-4c6c-b257-ca53ea89d00c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_A12_734734.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03N TCGA-AO-A03N-10A TCGA-AO-A03N-10A-01D-A10L-01 ec4b1048-4c85-4c6c-b257-ca53ea89d00c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_A12_734734.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03N TCGA-AO-A03N-10A TCGA-AO-A03N-10A-01D-A10L-01 ec4b1048-4c85-4c6c-b257-ca53ea89d00c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_A12_734734.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03N TCGA-AO-A03N-10A TCGA-AO-A03N-10A-01D-A10L-01 ec4b1048-4c85-4c6c-b257-ca53ea89d00c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_A12_734734.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03N TCGA-AO-A03N-10A TCGA-AO-A03N-10A-01D-A10L-01 ec4b1048-4c85-4c6c-b257-ca53ea89d00c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_A12_734734.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03N TCGA-AO-A03N-10A TCGA-AO-A03N-10A-01D-A10L-01 ec4b1048-4c85-4c6c-b257-ca53ea89d00c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_A12_734734.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03N TCGA-AO-A03N-10A TCGA-AO-A03N-10A-01D-A10L-01 ec4b1048-4c85-4c6c-b257-ca53ea89d00c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_A12_734734.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AO-A03N TCGA-AO-A03N-10A TCGA-AO-A03N-10A-01D-A10M-09 0af57ba4-305f-4d9d-b6fd-b242be5cd19a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03N TCGA-AO-A03N-10A TCGA-AO-A03N-10A-01D-A10M-09 0af57ba4-305f-4d9d-b6fd-b242be5cd19a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A03N TCGA-AO-A03N-10A TCGA-AO-A03N-10A-01D-A19H-09 45671631-68ef-4375-8a47-22796365f9a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03N TCGA-AO-A03N-10A TCGA-AO-A03N-10A-01W-A124-09 84cafda6-77a8-4d6e-b5b6-7bc6e5b09975 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11D-A00Y-05 cff804ff-321a-4b01-b2d1-b340073211f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11D-A00Y-05 cff804ff-321a-4b01-b2d1-b340073211f6 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-AO-A03O-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11D-A00Y-05 cff804ff-321a-4b01-b2d1-b340073211f6 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-AO-A03O-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11D-A00Y-05 cff804ff-321a-4b01-b2d1-b340073211f6 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-AO-A03O-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11D-A011-01 e866c189-b2f5-4948-afcf-adfc6ff323eb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11D-A011-01 e866c189-b2f5-4948-afcf-adfc6ff323eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F12_628570.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11D-A011-01 e866c189-b2f5-4948-afcf-adfc6ff323eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F12_628570.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11D-A011-01 e866c189-b2f5-4948-afcf-adfc6ff323eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F12_628570.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11D-A011-01 e866c189-b2f5-4948-afcf-adfc6ff323eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F12_628570.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11D-A011-01 e866c189-b2f5-4948-afcf-adfc6ff323eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F12_628570.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11D-A011-01 e866c189-b2f5-4948-afcf-adfc6ff323eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F12_628570.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11D-A011-01 e866c189-b2f5-4948-afcf-adfc6ff323eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F12_628570.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11D-A011-01 e866c189-b2f5-4948-afcf-adfc6ff323eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F12_628570.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11D-A015-09 722ae0dd-d0da-48c1-ba93-d8520d026434 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11D-A016-08 41aeeee9-2b88-4049-9a45-b658d558d7d4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11D-A068-02 adc8f88f-ac5b-4929-be2a-a2eb3b505cf3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11R-A00Z-07 a1460e9a-c4aa-4e07-abf4-fdb5f42f5eeb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11R-A00Z-07 a1460e9a-c4aa-4e07-abf4-fdb5f42f5eeb Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011814_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11R-A00Z-07 a1460e9a-c4aa-4e07-abf4-fdb5f42f5eeb Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011814_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11R-A00Z-07 a1460e9a-c4aa-4e07-abf4-fdb5f42f5eeb Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011814_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11R-A00Z-07 a1460e9a-c4aa-4e07-abf4-fdb5f42f5eeb RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_594291.TCGA-AO-A03O-01A-11R-A00Z-07.110218_UNC12-SN629_0061_A81DH9ABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11R-A00Z-07 a1460e9a-c4aa-4e07-abf4-fdb5f42f5eeb RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_594316.TCGA-AO-A03O-01A-11R-A00Z-07.110218_UNC12-SN629_0061_A81DH9ABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11R-A00Z-07 a1460e9a-c4aa-4e07-abf4-fdb5f42f5eeb RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_594496.TCGA-AO-A03O-01A-11R-A00Z-07.110218_UNC12-SN629_0061_A81DH9ABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11R-A010-13 e18db623-7b0f-43b4-ba06-a1f2b2d85518 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11R-A010-13 e18db623-7b0f-43b4-ba06-a1f2b2d85518 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A03O-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11R-A010-13 e18db623-7b0f-43b4-ba06-a1f2b2d85518 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A03O-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11W-A019-09 1578b356-7f42-4722-bc54-cd5f37954f6a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11W-A019-09 1578b356-7f42-4722-bc54-cd5f37954f6a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 47 22-JUL-11 04.53.19.115000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11W-A019-09 1578b356-7f42-4722-bc54-cd5f37954f6a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11W-A020-08 bcfaca20-c816-42a0-a3cf-51e253912221 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11X-A023-09 5b6aa692-07a9-41c9-87d2-e4fd47bce592 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03O TCGA-AO-A03O-01A TCGA-AO-A03O-01A-11X-A024-08 d83676bd-a214-4db5-9912-cf424ee41f3b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03O TCGA-AO-A03O-10A TCGA-AO-A03O-10A-01D-A012-01 6bbe881d-038b-4702-9285-9e88af6debdb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03O TCGA-AO-A03O-10A TCGA-AO-A03O-10A-01D-A012-01 6bbe881d-038b-4702-9285-9e88af6debdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A01_628508.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-AO-A03O TCGA-AO-A03O-10A TCGA-AO-A03O-10A-01D-A012-01 6bbe881d-038b-4702-9285-9e88af6debdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A01_628508.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AO-A03O TCGA-AO-A03O-10A TCGA-AO-A03O-10A-01D-A012-01 6bbe881d-038b-4702-9285-9e88af6debdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A01_628508.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AO-A03O TCGA-AO-A03O-10A TCGA-AO-A03O-10A-01D-A012-01 6bbe881d-038b-4702-9285-9e88af6debdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A01_628508.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AO-A03O TCGA-AO-A03O-10A TCGA-AO-A03O-10A-01D-A012-01 6bbe881d-038b-4702-9285-9e88af6debdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A01_628508.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AO-A03O TCGA-AO-A03O-10A TCGA-AO-A03O-10A-01D-A012-01 6bbe881d-038b-4702-9285-9e88af6debdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A01_628508.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AO-A03O TCGA-AO-A03O-10A TCGA-AO-A03O-10A-01D-A012-01 6bbe881d-038b-4702-9285-9e88af6debdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A01_628508.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AO-A03O TCGA-AO-A03O-10A TCGA-AO-A03O-10A-01D-A012-01 6bbe881d-038b-4702-9285-9e88af6debdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A01_628508.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-AO-A03O TCGA-AO-A03O-10A TCGA-AO-A03O-10A-01D-A017-09 b94e968c-30f7-44f4-bfa6-a8a60be417b8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03O TCGA-AO-A03O-10A TCGA-AO-A03O-10A-01D-A018-08 fe99c43e-3529-454d-8650-ac02ff02c1ac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03O TCGA-AO-A03O-10A TCGA-AO-A03O-10A-01D-A069-02 0804095e-dde4-4ac7-b4e7-ec29b57cd52c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03O TCGA-AO-A03O-10A TCGA-AO-A03O-10A-01W-A021-09 4b2392a1-ce32-47dd-83d2-be2342be7a58 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03O TCGA-AO-A03O-10A TCGA-AO-A03O-10A-01W-A021-09 4b2392a1-ce32-47dd-83d2-be2342be7a58 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 47 22-JUL-11 04.53.19.115000000 PM TCGA-AO-A03O TCGA-AO-A03O-10A TCGA-AO-A03O-10A-01W-A021-09 4b2392a1-ce32-47dd-83d2-be2342be7a58 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A03O TCGA-AO-A03O-10A TCGA-AO-A03O-10A-01W-A022-08 cebf65ed-1db1-4d85-91be-c6dec1f28429 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03O TCGA-AO-A03O-10A TCGA-AO-A03O-10A-01X-A025-09 d63c94ca-bf2b-4146-8a5f-854e2d098633 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03O TCGA-AO-A03O-10A TCGA-AO-A03O-10A-01X-A026-08 9e13f1a3-21f0-43f4-80f5-9089ee4c83e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03P TCGA-AO-A03P-01A TCGA-AO-A03P-01A-11D-A00Y-05 44cb959b-dd1c-48ca-b964-b3c43483be4f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03P TCGA-AO-A03P-01A TCGA-AO-A03P-01A-11D-A00Y-05 44cb959b-dd1c-48ca-b964-b3c43483be4f DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-AO-A03P-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-AO-A03P TCGA-AO-A03P-01A TCGA-AO-A03P-01A-11D-A00Y-05 44cb959b-dd1c-48ca-b964-b3c43483be4f DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-AO-A03P-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-AO-A03P TCGA-AO-A03P-01A TCGA-AO-A03P-01A-11D-A00Y-05 44cb959b-dd1c-48ca-b964-b3c43483be4f DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-AO-A03P-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-AO-A03P TCGA-AO-A03P-01A TCGA-AO-A03P-01A-11D-A011-01 1ec0101f-dc3b-4d2e-b182-b70350f92562 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03P TCGA-AO-A03P-01A TCGA-AO-A03P-01A-11D-A011-01 1ec0101f-dc3b-4d2e-b182-b70350f92562 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F11_628444.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-AO-A03P TCGA-AO-A03P-01A TCGA-AO-A03P-01A-11D-A011-01 1ec0101f-dc3b-4d2e-b182-b70350f92562 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F11_628444.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AO-A03P TCGA-AO-A03P-01A TCGA-AO-A03P-01A-11D-A011-01 1ec0101f-dc3b-4d2e-b182-b70350f92562 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F11_628444.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AO-A03P TCGA-AO-A03P-01A TCGA-AO-A03P-01A-11D-A011-01 1ec0101f-dc3b-4d2e-b182-b70350f92562 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F11_628444.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AO-A03P TCGA-AO-A03P-01A TCGA-AO-A03P-01A-11D-A011-01 1ec0101f-dc3b-4d2e-b182-b70350f92562 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F11_628444.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AO-A03P TCGA-AO-A03P-01A TCGA-AO-A03P-01A-11D-A011-01 1ec0101f-dc3b-4d2e-b182-b70350f92562 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F11_628444.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AO-A03P TCGA-AO-A03P-01A TCGA-AO-A03P-01A-11D-A011-01 1ec0101f-dc3b-4d2e-b182-b70350f92562 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F11_628444.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AO-A03P TCGA-AO-A03P-01A TCGA-AO-A03P-01A-11D-A011-01 1ec0101f-dc3b-4d2e-b182-b70350f92562 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F11_628444.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-AO-A03P TCGA-AO-A03P-01A TCGA-AO-A03P-01A-11D-A015-09 f6198caa-5bf5-4281-bd97-8863dc940ab3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03P TCGA-AO-A03P-01A TCGA-AO-A03P-01A-11D-A016-08 c728b2e8-eb1b-4b72-b51a-90c03010e5c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03P TCGA-AO-A03P-01A TCGA-AO-A03P-01A-11D-A068-02 743834af-33d2-41ce-a42a-9b7ee41dfc21 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03P TCGA-AO-A03P-01A TCGA-AO-A03P-01A-11R-A00Z-07 9543095d-b05b-43e0-8b8d-74bd916b510b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03P TCGA-AO-A03P-01A TCGA-AO-A03P-01A-11R-A00Z-07 9543095d-b05b-43e0-8b8d-74bd916b510b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011805_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-AO-A03P TCGA-AO-A03P-01A TCGA-AO-A03P-01A-11R-A00Z-07 9543095d-b05b-43e0-8b8d-74bd916b510b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011805_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-AO-A03P TCGA-AO-A03P-01A TCGA-AO-A03P-01A-11R-A00Z-07 9543095d-b05b-43e0-8b8d-74bd916b510b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011805_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-AO-A03P TCGA-AO-A03P-01A TCGA-AO-A03P-01A-11R-A010-13 4610f7ba-40da-466a-93df-8a3e678f9a7d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03P TCGA-AO-A03P-01A TCGA-AO-A03P-01A-11W-A019-09 185c5e15-c068-4a72-8d5e-468624bf958a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03P TCGA-AO-A03P-01A TCGA-AO-A03P-01A-11W-A019-09 185c5e15-c068-4a72-8d5e-468624bf958a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A03P TCGA-AO-A03P-01A TCGA-AO-A03P-01A-11W-A020-08 aee7d937-c68a-4f6c-9062-369b86ecb3bb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03P TCGA-AO-A03P-01A TCGA-AO-A03P-01A-11X-A023-09 462851a0-31aa-4c70-9659-3c8743142966 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03P TCGA-AO-A03P-01A TCGA-AO-A03P-01A-11X-A024-08 4b24222c-7a33-4709-8a7a-18a76de63468 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03P TCGA-AO-A03P-10A TCGA-AO-A03P-10A-01D-A012-01 bdf0b49d-4620-49bb-9ffa-281792de7870 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03P TCGA-AO-A03P-10A TCGA-AO-A03P-10A-01D-A012-01 bdf0b49d-4620-49bb-9ffa-281792de7870 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B05_628466.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-AO-A03P TCGA-AO-A03P-10A TCGA-AO-A03P-10A-01D-A012-01 bdf0b49d-4620-49bb-9ffa-281792de7870 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B05_628466.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AO-A03P TCGA-AO-A03P-10A TCGA-AO-A03P-10A-01D-A012-01 bdf0b49d-4620-49bb-9ffa-281792de7870 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B05_628466.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AO-A03P TCGA-AO-A03P-10A TCGA-AO-A03P-10A-01D-A012-01 bdf0b49d-4620-49bb-9ffa-281792de7870 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B05_628466.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AO-A03P TCGA-AO-A03P-10A TCGA-AO-A03P-10A-01D-A012-01 bdf0b49d-4620-49bb-9ffa-281792de7870 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B05_628466.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AO-A03P TCGA-AO-A03P-10A TCGA-AO-A03P-10A-01D-A012-01 bdf0b49d-4620-49bb-9ffa-281792de7870 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B05_628466.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AO-A03P TCGA-AO-A03P-10A TCGA-AO-A03P-10A-01D-A012-01 bdf0b49d-4620-49bb-9ffa-281792de7870 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B05_628466.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-AO-A03P TCGA-AO-A03P-10A TCGA-AO-A03P-10A-01D-A012-01 bdf0b49d-4620-49bb-9ffa-281792de7870 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_B05_628466.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-AO-A03P TCGA-AO-A03P-10A TCGA-AO-A03P-10A-01D-A017-09 8d57ba47-3c93-4be1-b8e9-c7867daab88e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03P TCGA-AO-A03P-10A TCGA-AO-A03P-10A-01D-A018-08 8777c96d-4f13-47c2-a5e6-43851a7ebda5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03P TCGA-AO-A03P-10A TCGA-AO-A03P-10A-01D-A069-02 94632200-d3f8-4987-806d-6aef37e92222 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03P TCGA-AO-A03P-10A TCGA-AO-A03P-10A-01W-A021-09 bac92eb4-e818-4d79-b4b0-b10c31ba6d4e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03P TCGA-AO-A03P-10A TCGA-AO-A03P-10A-01W-A021-09 bac92eb4-e818-4d79-b4b0-b10c31ba6d4e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A03P TCGA-AO-A03P-10A TCGA-AO-A03P-10A-01W-A022-08 823deda1-3c94-48de-92a5-1b0a85301de0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03P TCGA-AO-A03P-10A TCGA-AO-A03P-10A-01X-A025-09 9bb29b90-1343-42c9-bf04-b79fbb9f200b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03P TCGA-AO-A03P-10A TCGA-AO-A03P-10A-01X-A026-08 b888d76b-09b9-4f8e-86da-65b2024e5578 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21D-A032-05 efeab5da-f67c-4c44-a7c7-b7f1a1c74b0b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21D-A032-05 efeab5da-f67c-4c44-a7c7-b7f1a1c74b0b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AO-A03R-01A-21D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21D-A032-05 efeab5da-f67c-4c44-a7c7-b7f1a1c74b0b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AO-A03R-01A-21D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21D-A032-05 efeab5da-f67c-4c44-a7c7-b7f1a1c74b0b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AO-A03R-01A-21D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21D-A033-02 77ee1638-2e9c-436e-be7b-069024336f7e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21D-A036-01 cd00934b-6df0-467f-ae7d-ea7f4632e77c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21D-A036-01 cd00934b-6df0-467f-ae7d-ea7f4632e77c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E11_667236.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21D-A036-01 cd00934b-6df0-467f-ae7d-ea7f4632e77c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E11_667236.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21D-A036-01 cd00934b-6df0-467f-ae7d-ea7f4632e77c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E11_667236.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21D-A036-01 cd00934b-6df0-467f-ae7d-ea7f4632e77c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E11_667236.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21D-A036-01 cd00934b-6df0-467f-ae7d-ea7f4632e77c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E11_667236.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21D-A036-01 cd00934b-6df0-467f-ae7d-ea7f4632e77c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E11_667236.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21D-A036-01 cd00934b-6df0-467f-ae7d-ea7f4632e77c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E11_667236.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21D-A036-01 cd00934b-6df0-467f-ae7d-ea7f4632e77c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E11_667236.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21D-A044-08 2d76bb80-9d33-4242-b1ec-fdfec54f74d1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21D-A045-09 e7cd8838-c3c0-43f4-9156-307d934dffa0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21R-A034-07 6722de75-5d6d-4b1d-a961-856ec5bd12f1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21R-A034-07 6722de75-5d6d-4b1d-a961-856ec5bd12f1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012058_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21R-A034-07 6722de75-5d6d-4b1d-a961-856ec5bd12f1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012058_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21R-A034-07 6722de75-5d6d-4b1d-a961-856ec5bd12f1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012058_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21R-A034-07 6722de75-5d6d-4b1d-a961-856ec5bd12f1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406405.TCGA-AO-A03R-01A-21R-A034-07.110725_UNC9-SN296_0209_BC0479ABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21R-A034-07 6722de75-5d6d-4b1d-a961-856ec5bd12f1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406414.TCGA-AO-A03R-01A-21R-A034-07.110725_UNC9-SN296_0209_BC0479ABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21R-A034-07 6722de75-5d6d-4b1d-a961-856ec5bd12f1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406453.TCGA-AO-A03R-01A-21R-A034-07.110725_UNC9-SN296_0209_BC0479ABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21R-A035-13 83b599d9-5503-4410-af9f-9ea0ecdb5e01 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21R-A035-13 83b599d9-5503-4410-af9f-9ea0ecdb5e01 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A03R-01A-21R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21R-A035-13 83b599d9-5503-4410-af9f-9ea0ecdb5e01 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A03R-01A-21R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21W-A050-09 6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21W-A050-09 6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21W-A050-09 6d2dc4e3-f1ed-4ef0-ae83-e09c87756d56 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21W-A051-08 719a0031-f4c8-420a-9193-086aa5512afc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21X-A048-08 97cfab17-1cbf-436e-9788-fc07d0494466 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03R TCGA-AO-A03R-01A TCGA-AO-A03R-01A-21X-A049-09 40d24666-7723-4246-a9ed-afc7c13f0d06 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03R TCGA-AO-A03R-10A TCGA-AO-A03R-10A-01D-A031-02 3fdca8d2-94dd-41a8-94ce-267462d718b8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03R TCGA-AO-A03R-10A TCGA-AO-A03R-10A-01D-A037-01 74362395-04f1-497d-b131-38ca65442394 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03R TCGA-AO-A03R-10A TCGA-AO-A03R-10A-01D-A037-01 74362395-04f1-497d-b131-38ca65442394 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G01_667200.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AO-A03R TCGA-AO-A03R-10A TCGA-AO-A03R-10A-01D-A037-01 74362395-04f1-497d-b131-38ca65442394 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G01_667200.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A03R TCGA-AO-A03R-10A TCGA-AO-A03R-10A-01D-A037-01 74362395-04f1-497d-b131-38ca65442394 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G01_667200.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A03R TCGA-AO-A03R-10A TCGA-AO-A03R-10A-01D-A037-01 74362395-04f1-497d-b131-38ca65442394 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G01_667200.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A03R TCGA-AO-A03R-10A TCGA-AO-A03R-10A-01D-A037-01 74362395-04f1-497d-b131-38ca65442394 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G01_667200.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A03R TCGA-AO-A03R-10A TCGA-AO-A03R-10A-01D-A037-01 74362395-04f1-497d-b131-38ca65442394 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G01_667200.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A03R TCGA-AO-A03R-10A TCGA-AO-A03R-10A-01D-A037-01 74362395-04f1-497d-b131-38ca65442394 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G01_667200.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A03R TCGA-AO-A03R-10A TCGA-AO-A03R-10A-01D-A037-01 74362395-04f1-497d-b131-38ca65442394 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G01_667200.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AO-A03R TCGA-AO-A03R-10A TCGA-AO-A03R-10A-01D-A046-08 652e5c0f-2c99-4e4a-8136-6549124bdedb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03R TCGA-AO-A03R-10A TCGA-AO-A03R-10A-01D-A047-09 d8bb9ae6-2a9b-4879-bfa3-c6221e58b4c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03R TCGA-AO-A03R-10A TCGA-AO-A03R-10A-01W-A053-08 050a82fd-f735-4495-97d9-dc1e465b78a8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03R TCGA-AO-A03R-10A TCGA-AO-A03R-10A-01W-A055-09 26a53735-9790-4d97-88e9-1c2bf24eb6cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03R TCGA-AO-A03R-10A TCGA-AO-A03R-10A-01W-A055-09 26a53735-9790-4d97-88e9-1c2bf24eb6cb Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-AO-A03R TCGA-AO-A03R-10A TCGA-AO-A03R-10A-01W-A055-09 26a53735-9790-4d97-88e9-1c2bf24eb6cb Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A03R TCGA-AO-A03R-10A TCGA-AO-A03R-10A-01X-A052-08 13ebd60e-d9bb-44c2-9dd6-0e62fcedcd62 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03R TCGA-AO-A03R-10A TCGA-AO-A03R-10A-01X-A054-09 17db3f3a-43ba-4b3d-b0fd-62e071aad879 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21D-A032-05 0af4bd24-e434-42cd-9d68-c6a9af45e2e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21D-A032-05 0af4bd24-e434-42cd-9d68-c6a9af45e2e4 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AO-A03T-01A-21D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21D-A032-05 0af4bd24-e434-42cd-9d68-c6a9af45e2e4 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AO-A03T-01A-21D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21D-A032-05 0af4bd24-e434-42cd-9d68-c6a9af45e2e4 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AO-A03T-01A-21D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21D-A033-02 f0caa90b-a9a1-42b7-9527-35dab7469294 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21D-A036-01 fb504c0c-2c3c-4b5d-8836-dc9bbf30ff98 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21D-A036-01 fb504c0c-2c3c-4b5d-8836-dc9bbf30ff98 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H10_667190.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21D-A036-01 fb504c0c-2c3c-4b5d-8836-dc9bbf30ff98 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H10_667190.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21D-A036-01 fb504c0c-2c3c-4b5d-8836-dc9bbf30ff98 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H10_667190.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21D-A036-01 fb504c0c-2c3c-4b5d-8836-dc9bbf30ff98 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H10_667190.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21D-A036-01 fb504c0c-2c3c-4b5d-8836-dc9bbf30ff98 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H10_667190.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21D-A036-01 fb504c0c-2c3c-4b5d-8836-dc9bbf30ff98 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H10_667190.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21D-A036-01 fb504c0c-2c3c-4b5d-8836-dc9bbf30ff98 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H10_667190.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21D-A036-01 fb504c0c-2c3c-4b5d-8836-dc9bbf30ff98 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H10_667190.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21D-A044-08 53b9fe72-4e7a-49d4-917c-fa7ebc9d3529 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21D-A045-09 00daaa0a-dc00-447b-8f04-4b933ba40e01 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21R-A034-07 0e6447b4-6e63-4420-bfa8-5b1d711d90fc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21R-A034-07 0e6447b4-6e63-4420-bfa8-5b1d711d90fc Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012059_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21R-A034-07 0e6447b4-6e63-4420-bfa8-5b1d711d90fc Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012059_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21R-A034-07 0e6447b4-6e63-4420-bfa8-5b1d711d90fc Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012059_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21R-A034-07 0e6447b4-6e63-4420-bfa8-5b1d711d90fc RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_609378.TCGA-AO-A03T-01A-21R-A034-07.110218_UNC12-SN629_0062_B81DEHABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21R-A034-07 0e6447b4-6e63-4420-bfa8-5b1d711d90fc RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_609420.TCGA-AO-A03T-01A-21R-A034-07.110218_UNC12-SN629_0062_B81DEHABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21R-A034-07 0e6447b4-6e63-4420-bfa8-5b1d711d90fc RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_609597.TCGA-AO-A03T-01A-21R-A034-07.110218_UNC12-SN629_0062_B81DEHABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21R-A035-13 64c434c4-5058-43e1-8cd5-761a407f59da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21R-A035-13 64c434c4-5058-43e1-8cd5-761a407f59da miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A03T-01A-21R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21R-A035-13 64c434c4-5058-43e1-8cd5-761a407f59da miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A03T-01A-21R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21W-A050-09 cbea866d-da66-4f7c-994b-c1ec35aa2d4b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21W-A050-09 cbea866d-da66-4f7c-994b-c1ec35aa2d4b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21W-A050-09 cbea866d-da66-4f7c-994b-c1ec35aa2d4b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21W-A051-08 4e5d8788-39ee-4254-8e43-09268195625f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21X-A048-08 aef7d1f7-1480-4a75-924f-89cea712c225 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03T TCGA-AO-A03T-01A TCGA-AO-A03T-01A-21X-A049-09 fcb968f5-730c-4e71-9084-c284613e9cfc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03T TCGA-AO-A03T-10A TCGA-AO-A03T-10A-01D-A031-02 20a6cb56-5981-490a-a98f-f70a942edc6e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03T TCGA-AO-A03T-10A TCGA-AO-A03T-10A-01D-A037-01 50991743-201a-42aa-92a5-3b70a7ac19cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03T TCGA-AO-A03T-10A TCGA-AO-A03T-10A-01D-A037-01 50991743-201a-42aa-92a5-3b70a7ac19cf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H04_667078.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AO-A03T TCGA-AO-A03T-10A TCGA-AO-A03T-10A-01D-A037-01 50991743-201a-42aa-92a5-3b70a7ac19cf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H04_667078.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A03T TCGA-AO-A03T-10A TCGA-AO-A03T-10A-01D-A037-01 50991743-201a-42aa-92a5-3b70a7ac19cf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H04_667078.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A03T TCGA-AO-A03T-10A TCGA-AO-A03T-10A-01D-A037-01 50991743-201a-42aa-92a5-3b70a7ac19cf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H04_667078.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A03T TCGA-AO-A03T-10A TCGA-AO-A03T-10A-01D-A037-01 50991743-201a-42aa-92a5-3b70a7ac19cf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H04_667078.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A03T TCGA-AO-A03T-10A TCGA-AO-A03T-10A-01D-A037-01 50991743-201a-42aa-92a5-3b70a7ac19cf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H04_667078.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A03T TCGA-AO-A03T-10A TCGA-AO-A03T-10A-01D-A037-01 50991743-201a-42aa-92a5-3b70a7ac19cf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H04_667078.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A03T TCGA-AO-A03T-10A TCGA-AO-A03T-10A-01D-A037-01 50991743-201a-42aa-92a5-3b70a7ac19cf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H04_667078.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AO-A03T TCGA-AO-A03T-10A TCGA-AO-A03T-10A-01D-A046-08 b919fad8-f773-4c0e-9d1e-cf5a404bc965 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03T TCGA-AO-A03T-10A TCGA-AO-A03T-10A-01D-A047-09 fa45adf6-4137-4a63-b0c4-c5e52fcbc2f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03T TCGA-AO-A03T-10A TCGA-AO-A03T-10A-01W-A053-08 ae508a29-57b9-4796-85f6-95ec85f6efbb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03T TCGA-AO-A03T-10A TCGA-AO-A03T-10A-01W-A055-09 467c3965-5537-4c89-a3f0-ba3eca9854b4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03T TCGA-AO-A03T-10A TCGA-AO-A03T-10A-01W-A055-09 467c3965-5537-4c89-a3f0-ba3eca9854b4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-AO-A03T TCGA-AO-A03T-10A TCGA-AO-A03T-10A-01W-A055-09 467c3965-5537-4c89-a3f0-ba3eca9854b4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A03T TCGA-AO-A03T-10A TCGA-AO-A03T-10A-01X-A052-08 e04625b1-914e-48ea-b605-8da32d370aa3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03T TCGA-AO-A03T-10A TCGA-AO-A03T-10A-01X-A054-09 c2500d0d-cfa7-4cfe-a704-f1b4e856e61b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21D-A10K-02 34066dcf-8d41-443e-a13a-042b5571fd1f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21D-A10L-01 1f2b4987-b022-40f8-a9cf-4dbfd5d377f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21D-A10L-01 1f2b4987-b022-40f8-a9cf-4dbfd5d377f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F10_734720.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21D-A10L-01 1f2b4987-b022-40f8-a9cf-4dbfd5d377f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F10_734720.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21D-A10L-01 1f2b4987-b022-40f8-a9cf-4dbfd5d377f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F10_734720.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21D-A10L-01 1f2b4987-b022-40f8-a9cf-4dbfd5d377f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F10_734720.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21D-A10L-01 1f2b4987-b022-40f8-a9cf-4dbfd5d377f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F10_734720.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21D-A10L-01 1f2b4987-b022-40f8-a9cf-4dbfd5d377f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F10_734720.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21D-A10L-01 1f2b4987-b022-40f8-a9cf-4dbfd5d377f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F10_734720.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21D-A10L-01 1f2b4987-b022-40f8-a9cf-4dbfd5d377f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F10_734720.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21D-A10M-09 1e0ecd57-5c7d-4495-874d-9e286c999c22 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21D-A10M-09 1e0ecd57-5c7d-4495-874d-9e286c999c22 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21D-A10N-05 516930f1-770d-4b16-a4ed-4039ffcc44ad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21D-A10N-05 516930f1-770d-4b16-a4ed-4039ffcc44ad DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486017_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21D-A10N-05 516930f1-770d-4b16-a4ed-4039ffcc44ad DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486017_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21D-A10N-05 516930f1-770d-4b16-a4ed-4039ffcc44ad DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-AO-A03U-01B-21D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21D-A10N-05 516930f1-770d-4b16-a4ed-4039ffcc44ad DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-AO-A03U-01B-21D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21R-A10I-13 e40af9e8-8bd5-4fca-8383-8af5ca328292 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21R-A10I-13 e40af9e8-8bd5-4fca-8383-8af5ca328292 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A03U-01B-21R-A10I-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21R-A10I-13 e40af9e8-8bd5-4fca-8383-8af5ca328292 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A03U-01B-21R-A10I-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21R-A10J-07 bbca4523-28a7-416c-98a8-02c3350705fc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21R-A10J-07 bbca4523-28a7-416c-98a8-02c3350705fc Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012726_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21R-A10J-07 bbca4523-28a7-416c-98a8-02c3350705fc Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012726_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21R-A10J-07 bbca4523-28a7-416c-98a8-02c3350705fc Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012726_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21R-A10J-07 bbca4523-28a7-416c-98a8-02c3350705fc RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_440981.TCGA-AO-A03U-01B-21R-A10J-07.110511_UNC11-SN627_0084_AC02M9ABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21R-A10J-07 bbca4523-28a7-416c-98a8-02c3350705fc RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_440989.TCGA-AO-A03U-01B-21R-A10J-07.110511_UNC11-SN627_0084_AC02M9ABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21R-A10J-07 bbca4523-28a7-416c-98a8-02c3350705fc RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441266.TCGA-AO-A03U-01B-21R-A10J-07.110511_UNC11-SN627_0084_AC02M9ABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A03U TCGA-AO-A03U-01B TCGA-AO-A03U-01B-21W-A124-09 d06e8702-6b7c-4179-994a-3231e383f297 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03U TCGA-AO-A03U-10A TCGA-AO-A03U-10A-01D-A10K-02 1d211e50-a6c8-46ba-b2c7-24a3738480f5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03U TCGA-AO-A03U-10A TCGA-AO-A03U-10A-01D-A10L-01 c7bfa819-d549-4d2c-b37e-f13530df1ad8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03U TCGA-AO-A03U-10A TCGA-AO-A03U-10A-01D-A10L-01 c7bfa819-d549-4d2c-b37e-f13530df1ad8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E08_734682.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AO-A03U TCGA-AO-A03U-10A TCGA-AO-A03U-10A-01D-A10L-01 c7bfa819-d549-4d2c-b37e-f13530df1ad8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E08_734682.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03U TCGA-AO-A03U-10A TCGA-AO-A03U-10A-01D-A10L-01 c7bfa819-d549-4d2c-b37e-f13530df1ad8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E08_734682.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03U TCGA-AO-A03U-10A TCGA-AO-A03U-10A-01D-A10L-01 c7bfa819-d549-4d2c-b37e-f13530df1ad8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E08_734682.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03U TCGA-AO-A03U-10A TCGA-AO-A03U-10A-01D-A10L-01 c7bfa819-d549-4d2c-b37e-f13530df1ad8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E08_734682.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03U TCGA-AO-A03U-10A TCGA-AO-A03U-10A-01D-A10L-01 c7bfa819-d549-4d2c-b37e-f13530df1ad8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E08_734682.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03U TCGA-AO-A03U-10A TCGA-AO-A03U-10A-01D-A10L-01 c7bfa819-d549-4d2c-b37e-f13530df1ad8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E08_734682.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A03U TCGA-AO-A03U-10A TCGA-AO-A03U-10A-01D-A10L-01 c7bfa819-d549-4d2c-b37e-f13530df1ad8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E08_734682.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AO-A03U TCGA-AO-A03U-10A TCGA-AO-A03U-10A-01D-A10M-09 24b629ef-6829-4494-8843-9877a56303cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03U TCGA-AO-A03U-10A TCGA-AO-A03U-10A-01D-A10M-09 24b629ef-6829-4494-8843-9877a56303cf Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A03U TCGA-AO-A03U-10A TCGA-AO-A03U-10A-01W-A124-09 237d601f-39f1-44eb-97c9-3868729d7c0a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11D-A10X-02 f2c8483a-5b07-4a5b-b6de-07141786ce3a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11D-A10Y-09 d88c365f-366a-49d5-9860-b930aab3eb1b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11D-A10Y-09 d88c365f-366a-49d5-9860-b930aab3eb1b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11D-A111-01 6c95b250-69e7-444d-8087-731383aaff4f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11D-A111-01 6c95b250-69e7-444d-8087-731383aaff4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F03_735036.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11D-A111-01 6c95b250-69e7-444d-8087-731383aaff4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F03_735036.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11D-A111-01 6c95b250-69e7-444d-8087-731383aaff4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F03_735036.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11D-A111-01 6c95b250-69e7-444d-8087-731383aaff4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F03_735036.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11D-A111-01 6c95b250-69e7-444d-8087-731383aaff4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F03_735036.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11D-A111-01 6c95b250-69e7-444d-8087-731383aaff4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F03_735036.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11D-A111-01 6c95b250-69e7-444d-8087-731383aaff4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F03_735036.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11D-A111-01 6c95b250-69e7-444d-8087-731383aaff4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F03_735036.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11D-A112-05 a630d148-4b3d-4663-ac48-678675b0985c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11D-A112-05 a630d148-4b3d-4663-ac48-678675b0985c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-AO-A03V-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11D-A112-05 a630d148-4b3d-4663-ac48-678675b0985c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-AO-A03V-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11D-A112-05 a630d148-4b3d-4663-ac48-678675b0985c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-AO-A03V-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11R-A114-13 8fba0bb2-d551-40e7-a5ce-00818848d85f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11R-A114-13 8fba0bb2-d551-40e7-a5ce-00818848d85f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AO-A03V-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11R-A114-13 8fba0bb2-d551-40e7-a5ce-00818848d85f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AO-A03V-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11R-A115-07 35a76121-7e58-4e28-a39c-6301a4cc0e2e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11R-A115-07 35a76121-7e58-4e28-a39c-6301a4cc0e2e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012740_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11R-A115-07 35a76121-7e58-4e28-a39c-6301a4cc0e2e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012740_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11R-A115-07 35a76121-7e58-4e28-a39c-6301a4cc0e2e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012740_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11R-A115-07 35a76121-7e58-4e28-a39c-6301a4cc0e2e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421119.TCGA-AO-A03V-01A-11R-A115-07.110606_UNC12-SN629_0090_AD0CTGABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11R-A115-07 35a76121-7e58-4e28-a39c-6301a4cc0e2e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421134.TCGA-AO-A03V-01A-11R-A115-07.110606_UNC12-SN629_0090_AD0CTGABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11R-A115-07 35a76121-7e58-4e28-a39c-6301a4cc0e2e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421166.TCGA-AO-A03V-01A-11R-A115-07.110606_UNC12-SN629_0090_AD0CTGABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A03V TCGA-AO-A03V-01A TCGA-AO-A03V-01A-11W-A12T-09 bff87c96-f2d6-497c-8be1-06d2ada1b3da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A03V TCGA-AO-A03V-10A TCGA-AO-A03V-10A-01D-A10Z-02 1ff4d235-3a56-4110-b0cb-6b6b8ab23578 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A03V TCGA-AO-A03V-10A TCGA-AO-A03V-10A-01D-A110-09 95a2e03d-1cc6-4565-b63f-99c7f2165c4d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A03V TCGA-AO-A03V-10A TCGA-AO-A03V-10A-01D-A110-09 95a2e03d-1cc6-4565-b63f-99c7f2165c4d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A03V TCGA-AO-A03V-10A TCGA-AO-A03V-10A-01D-A113-01 571b4d10-ae8b-435c-82e7-bc725c7d45ca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A03V TCGA-AO-A03V-10A TCGA-AO-A03V-10A-01D-A113-01 571b4d10-ae8b-435c-82e7-bc725c7d45ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G10_735150.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-AO-A03V TCGA-AO-A03V-10A TCGA-AO-A03V-10A-01D-A113-01 571b4d10-ae8b-435c-82e7-bc725c7d45ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G10_735150.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A03V TCGA-AO-A03V-10A TCGA-AO-A03V-10A-01D-A113-01 571b4d10-ae8b-435c-82e7-bc725c7d45ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G10_735150.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A03V TCGA-AO-A03V-10A TCGA-AO-A03V-10A-01D-A113-01 571b4d10-ae8b-435c-82e7-bc725c7d45ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G10_735150.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A03V TCGA-AO-A03V-10A TCGA-AO-A03V-10A-01D-A113-01 571b4d10-ae8b-435c-82e7-bc725c7d45ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G10_735150.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A03V TCGA-AO-A03V-10A TCGA-AO-A03V-10A-01D-A113-01 571b4d10-ae8b-435c-82e7-bc725c7d45ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G10_735150.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A03V TCGA-AO-A03V-10A TCGA-AO-A03V-10A-01D-A113-01 571b4d10-ae8b-435c-82e7-bc725c7d45ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G10_735150.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A03V TCGA-AO-A03V-10A TCGA-AO-A03V-10A-01D-A113-01 571b4d10-ae8b-435c-82e7-bc725c7d45ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G10_735150.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-AO-A03V TCGA-AO-A03V-10A TCGA-AO-A03V-10A-01W-A12U-09 118ad950-3bed-46c6-b699-637e1fcf430d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A03V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11D-A032-05 bb550f4b-6074-4328-9c3a-9309f019e0d7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11D-A032-05 bb550f4b-6074-4328-9c3a-9309f019e0d7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AO-A0J2-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11D-A032-05 bb550f4b-6074-4328-9c3a-9309f019e0d7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AO-A0J2-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11D-A032-05 bb550f4b-6074-4328-9c3a-9309f019e0d7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AO-A0J2-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11D-A033-02 739c3fe0-7421-43fc-8e5f-aa37a3ce3445 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11D-A036-01 3b7dc667-6a9b-46e3-b0db-f11980cac1fe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11D-A036-01 3b7dc667-6a9b-46e3-b0db-f11980cac1fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C10_667204.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11D-A036-01 3b7dc667-6a9b-46e3-b0db-f11980cac1fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C10_667204.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11D-A036-01 3b7dc667-6a9b-46e3-b0db-f11980cac1fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C10_667204.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11D-A036-01 3b7dc667-6a9b-46e3-b0db-f11980cac1fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C10_667204.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11D-A036-01 3b7dc667-6a9b-46e3-b0db-f11980cac1fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C10_667204.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11D-A036-01 3b7dc667-6a9b-46e3-b0db-f11980cac1fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C10_667204.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11D-A036-01 3b7dc667-6a9b-46e3-b0db-f11980cac1fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C10_667204.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11D-A036-01 3b7dc667-6a9b-46e3-b0db-f11980cac1fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C10_667204.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11D-A044-08 eb22fb31-088f-4d17-9ce1-9f93e538b0b4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11D-A045-09 785220ca-4430-4f42-94cb-d6f484f2665b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11D-A19H-09 207f8a42-5b05-4876-b0ae-ebfaeea27844 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11R-A034-07 81689324-2986-49f6-bef6-f5a525ca36c2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11R-A034-07 81689324-2986-49f6-bef6-f5a525ca36c2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012381_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11R-A034-07 81689324-2986-49f6-bef6-f5a525ca36c2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012381_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11R-A034-07 81689324-2986-49f6-bef6-f5a525ca36c2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012381_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11R-A034-07 81689324-2986-49f6-bef6-f5a525ca36c2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_470175.TCGA-AO-A0J2-01A-11R-A034-07.110503_UNC12-SN629_0079_AB0151ABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11R-A034-07 81689324-2986-49f6-bef6-f5a525ca36c2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_470185.TCGA-AO-A0J2-01A-11R-A034-07.110503_UNC12-SN629_0079_AB0151ABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11R-A034-07 81689324-2986-49f6-bef6-f5a525ca36c2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_470215.TCGA-AO-A0J2-01A-11R-A034-07.110503_UNC12-SN629_0079_AB0151ABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11R-A035-13 b3a358c2-a0ee-4d76-8713-886656148849 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11R-A035-13 b3a358c2-a0ee-4d76-8713-886656148849 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0J2-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11R-A035-13 b3a358c2-a0ee-4d76-8713-886656148849 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0J2-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11W-A050-09 84b66e02-1b37-4424-b752-363f7861fe74 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11W-A050-09 84b66e02-1b37-4424-b752-363f7861fe74 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11W-A051-08 877bb20c-e1be-4d0f-8269-34d220820994 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11X-A048-08 78fe8337-1db3-4933-a540-65d7a9498fe9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-01A TCGA-AO-A0J2-01A-11X-A049-09 34bdc8ac-b55f-4646-bd39-f08db52cef1f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-10A TCGA-AO-A0J2-10A-01D-A031-02 d1173161-40ef-4f3e-94e3-eb06c3a36bf6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-10A TCGA-AO-A0J2-10A-01D-A037-01 414a74fa-3bc1-4ff6-8ee6-48a6712b1ae9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-10A TCGA-AO-A0J2-10A-01D-A037-01 414a74fa-3bc1-4ff6-8ee6-48a6712b1ae9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G11_667066.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AO-A0J2 TCGA-AO-A0J2-10A TCGA-AO-A0J2-10A-01D-A037-01 414a74fa-3bc1-4ff6-8ee6-48a6712b1ae9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G11_667066.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-10A TCGA-AO-A0J2-10A-01D-A037-01 414a74fa-3bc1-4ff6-8ee6-48a6712b1ae9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G11_667066.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-10A TCGA-AO-A0J2-10A-01D-A037-01 414a74fa-3bc1-4ff6-8ee6-48a6712b1ae9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G11_667066.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-10A TCGA-AO-A0J2-10A-01D-A037-01 414a74fa-3bc1-4ff6-8ee6-48a6712b1ae9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G11_667066.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-10A TCGA-AO-A0J2-10A-01D-A037-01 414a74fa-3bc1-4ff6-8ee6-48a6712b1ae9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G11_667066.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-10A TCGA-AO-A0J2-10A-01D-A037-01 414a74fa-3bc1-4ff6-8ee6-48a6712b1ae9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G11_667066.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-10A TCGA-AO-A0J2-10A-01D-A037-01 414a74fa-3bc1-4ff6-8ee6-48a6712b1ae9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G11_667066.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-10A TCGA-AO-A0J2-10A-01D-A046-08 66b908d8-8595-47b1-aac9-af0d17c54789 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-10A TCGA-AO-A0J2-10A-01D-A047-09 d5d15e5f-bb2e-4af5-97a8-4fb7531ef3e3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-10A TCGA-AO-A0J2-10A-01D-A19H-09 5afdc08c-4860-498e-8e4e-91d148812e62 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-10A TCGA-AO-A0J2-10A-01W-A053-08 2a1aed51-c5b3-4075-9dd0-97e404a820f3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-10A TCGA-AO-A0J2-10A-01W-A055-09 e3d65145-2dc6-4be3-a3b9-b53940c920fe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-10A TCGA-AO-A0J2-10A-01W-A055-09 e3d65145-2dc6-4be3-a3b9-b53940c920fe Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-10A TCGA-AO-A0J2-10A-01X-A052-08 3cbcd9c7-cd4d-473b-b64d-39c76782d17f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J2 TCGA-AO-A0J2-10A TCGA-AO-A0J2-10A-01X-A054-09 d32fd8e0-8bbe-4499-9edc-027c1f77ebe4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11D-A032-05 74e1eff3-de29-4a07-9f2d-208fa7b0bd26 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11D-A032-05 74e1eff3-de29-4a07-9f2d-208fa7b0bd26 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AO-A0J3-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11D-A032-05 74e1eff3-de29-4a07-9f2d-208fa7b0bd26 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AO-A0J3-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11D-A032-05 74e1eff3-de29-4a07-9f2d-208fa7b0bd26 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AO-A0J3-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11D-A033-02 edddaf3d-2723-43cf-8562-142fb2266a8e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11D-A036-01 40c683dc-6337-4e19-9a9d-bad8fcfaa026 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11D-A036-01 40c683dc-6337-4e19-9a9d-bad8fcfaa026 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B01_667198.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11D-A036-01 40c683dc-6337-4e19-9a9d-bad8fcfaa026 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B01_667198.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11D-A036-01 40c683dc-6337-4e19-9a9d-bad8fcfaa026 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B01_667198.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11D-A036-01 40c683dc-6337-4e19-9a9d-bad8fcfaa026 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B01_667198.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11D-A036-01 40c683dc-6337-4e19-9a9d-bad8fcfaa026 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B01_667198.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11D-A036-01 40c683dc-6337-4e19-9a9d-bad8fcfaa026 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B01_667198.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11D-A036-01 40c683dc-6337-4e19-9a9d-bad8fcfaa026 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B01_667198.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11D-A036-01 40c683dc-6337-4e19-9a9d-bad8fcfaa026 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B01_667198.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11D-A044-08 d610bd09-26cb-4191-b879-ea3c537d5642 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11D-A045-09 420b2f9a-047c-4dc3-ad73-02b0579e6881 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11R-A034-07 7455cc98-aceb-4adc-932b-4fddd979c522 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11R-A034-07 7455cc98-aceb-4adc-932b-4fddd979c522 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012382_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11R-A034-07 7455cc98-aceb-4adc-932b-4fddd979c522 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012382_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11R-A034-07 7455cc98-aceb-4adc-932b-4fddd979c522 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012382_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11R-A034-07 7455cc98-aceb-4adc-932b-4fddd979c522 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_470196.TCGA-AO-A0J3-01A-11R-A034-07.110503_UNC12-SN629_0079_AB0151ABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11R-A034-07 7455cc98-aceb-4adc-932b-4fddd979c522 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_470206.TCGA-AO-A0J3-01A-11R-A034-07.110503_UNC12-SN629_0079_AB0151ABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11R-A034-07 7455cc98-aceb-4adc-932b-4fddd979c522 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_470236.TCGA-AO-A0J3-01A-11R-A034-07.110503_UNC12-SN629_0079_AB0151ABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11R-A035-13 fc2f826b-ed86-40e5-823f-cdf77ea32261 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11R-A035-13 fc2f826b-ed86-40e5-823f-cdf77ea32261 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0J3-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11R-A035-13 fc2f826b-ed86-40e5-823f-cdf77ea32261 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0J3-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11W-A050-09 ff706355-867e-4968-99ad-0af4e24ece51 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11W-A050-09 ff706355-867e-4968-99ad-0af4e24ece51 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11W-A050-09 ff706355-867e-4968-99ad-0af4e24ece51 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11W-A051-08 e7bd6636-79d2-4818-94f0-3f3c98fc5650 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11X-A048-08 1b54ffcb-0ac8-4cf2-963e-827599d096a4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-01A TCGA-AO-A0J3-01A-11X-A049-09 fcf12dd1-a3a8-4d9a-abf3-ffcc2324ceba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-10A TCGA-AO-A0J3-10A-01D-A031-02 c753997f-4d26-428d-9797-70a1fa21a89f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-10A TCGA-AO-A0J3-10A-01D-A037-01 3e61eb21-fe05-4107-8b7d-20d52863c7cd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-10A TCGA-AO-A0J3-10A-01D-A037-01 3e61eb21-fe05-4107-8b7d-20d52863c7cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D06_667126.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AO-A0J3 TCGA-AO-A0J3-10A TCGA-AO-A0J3-10A-01D-A037-01 3e61eb21-fe05-4107-8b7d-20d52863c7cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D06_667126.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-10A TCGA-AO-A0J3-10A-01D-A037-01 3e61eb21-fe05-4107-8b7d-20d52863c7cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D06_667126.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-10A TCGA-AO-A0J3-10A-01D-A037-01 3e61eb21-fe05-4107-8b7d-20d52863c7cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D06_667126.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-10A TCGA-AO-A0J3-10A-01D-A037-01 3e61eb21-fe05-4107-8b7d-20d52863c7cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D06_667126.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-10A TCGA-AO-A0J3-10A-01D-A037-01 3e61eb21-fe05-4107-8b7d-20d52863c7cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D06_667126.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-10A TCGA-AO-A0J3-10A-01D-A037-01 3e61eb21-fe05-4107-8b7d-20d52863c7cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D06_667126.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-10A TCGA-AO-A0J3-10A-01D-A037-01 3e61eb21-fe05-4107-8b7d-20d52863c7cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D06_667126.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-10A TCGA-AO-A0J3-10A-01D-A046-08 6f56a69e-8dc9-4995-967e-bd5f4e097f43 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-10A TCGA-AO-A0J3-10A-01D-A047-09 e3167ffa-104a-4e58-8e5f-c194be5a6957 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-10A TCGA-AO-A0J3-10A-01W-A053-08 e6753845-fedf-48c9-b660-ebcc853d55e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-10A TCGA-AO-A0J3-10A-01W-A055-09 ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-10A TCGA-AO-A0J3-10A-01W-A055-09 ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-10A TCGA-AO-A0J3-10A-01W-A055-09 ac697d39-8c85-4acf-8ca9-fe8cb8cc77f8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-10A TCGA-AO-A0J3-10A-01X-A052-08 7d1a0203-d76c-4a97-920b-e015c0889771 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J3 TCGA-AO-A0J3-10A TCGA-AO-A0J3-10A-01X-A054-09 ac73ccc6-a66e-438b-8539-edf002ffb65a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11D-A032-05 46fcb0bb-4457-4858-a3e0-34c8fd7e1481 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11D-A032-05 46fcb0bb-4457-4858-a3e0-34c8fd7e1481 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AO-A0J4-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11D-A032-05 46fcb0bb-4457-4858-a3e0-34c8fd7e1481 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AO-A0J4-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11D-A032-05 46fcb0bb-4457-4858-a3e0-34c8fd7e1481 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AO-A0J4-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11D-A033-02 b243a5a4-722a-4825-8a9a-f2626bd51bf6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11D-A036-01 4883e039-c3b8-4777-a0fa-765f06006523 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11D-A036-01 4883e039-c3b8-4777-a0fa-765f06006523 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D10_667130.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11D-A036-01 4883e039-c3b8-4777-a0fa-765f06006523 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D10_667130.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11D-A036-01 4883e039-c3b8-4777-a0fa-765f06006523 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D10_667130.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11D-A036-01 4883e039-c3b8-4777-a0fa-765f06006523 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D10_667130.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11D-A036-01 4883e039-c3b8-4777-a0fa-765f06006523 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D10_667130.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11D-A036-01 4883e039-c3b8-4777-a0fa-765f06006523 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D10_667130.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11D-A036-01 4883e039-c3b8-4777-a0fa-765f06006523 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D10_667130.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11D-A036-01 4883e039-c3b8-4777-a0fa-765f06006523 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D10_667130.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11D-A044-08 f17b87d4-a253-4a0f-acc9-f1fde96b7fae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11D-A045-09 df90522f-331b-40ad-93af-1ab4b1c7961b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11D-A128-09 110b5f05-ded7-45ec-b0f6-a941c92d77dd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11R-A034-07 4808bc63-000a-4a49-a25b-4b817ca5ea54 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11R-A034-07 4808bc63-000a-4a49-a25b-4b817ca5ea54 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012383_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11R-A034-07 4808bc63-000a-4a49-a25b-4b817ca5ea54 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012383_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11R-A034-07 4808bc63-000a-4a49-a25b-4b817ca5ea54 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012383_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11R-A034-07 4808bc63-000a-4a49-a25b-4b817ca5ea54 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_470202.TCGA-AO-A0J4-01A-11R-A034-07.110503_UNC12-SN629_0079_AB0151ABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11R-A034-07 4808bc63-000a-4a49-a25b-4b817ca5ea54 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_470209.TCGA-AO-A0J4-01A-11R-A034-07.110503_UNC12-SN629_0079_AB0151ABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11R-A034-07 4808bc63-000a-4a49-a25b-4b817ca5ea54 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_470228.TCGA-AO-A0J4-01A-11R-A034-07.110503_UNC12-SN629_0079_AB0151ABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11R-A035-13 56dc2230-8f9e-4c98-936d-7db210111c22 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11R-A035-13 56dc2230-8f9e-4c98-936d-7db210111c22 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0J4-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11R-A035-13 56dc2230-8f9e-4c98-936d-7db210111c22 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0J4-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11W-A050-09 7667f49c-449d-44ce-bab8-02a491bb6775 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11W-A050-09 7667f49c-449d-44ce-bab8-02a491bb6775 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11W-A050-09 7667f49c-449d-44ce-bab8-02a491bb6775 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11W-A051-08 a30c6374-3d0f-4c6d-b41e-db36eff6ea51 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11X-A048-08 1e638ae4-307e-44fe-9f78-253224b11a69 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-01A TCGA-AO-A0J4-01A-11X-A049-09 985246d2-ab5f-4442-adc4-edcf638c1212 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-10A TCGA-AO-A0J4-10A-01D-A031-02 b705bc76-6fa5-4e32-906b-4a4cce91b692 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-10A TCGA-AO-A0J4-10A-01D-A037-01 af7d83ed-09a4-4e6c-ad9d-cdb929a51cb9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-10A TCGA-AO-A0J4-10A-01D-A037-01 af7d83ed-09a4-4e6c-ad9d-cdb929a51cb9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G05_667150.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AO-A0J4 TCGA-AO-A0J4-10A TCGA-AO-A0J4-10A-01D-A037-01 af7d83ed-09a4-4e6c-ad9d-cdb929a51cb9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G05_667150.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-10A TCGA-AO-A0J4-10A-01D-A037-01 af7d83ed-09a4-4e6c-ad9d-cdb929a51cb9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G05_667150.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-10A TCGA-AO-A0J4-10A-01D-A037-01 af7d83ed-09a4-4e6c-ad9d-cdb929a51cb9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G05_667150.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-10A TCGA-AO-A0J4-10A-01D-A037-01 af7d83ed-09a4-4e6c-ad9d-cdb929a51cb9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G05_667150.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-10A TCGA-AO-A0J4-10A-01D-A037-01 af7d83ed-09a4-4e6c-ad9d-cdb929a51cb9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G05_667150.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-10A TCGA-AO-A0J4-10A-01D-A037-01 af7d83ed-09a4-4e6c-ad9d-cdb929a51cb9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G05_667150.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-10A TCGA-AO-A0J4-10A-01D-A037-01 af7d83ed-09a4-4e6c-ad9d-cdb929a51cb9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G05_667150.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-10A TCGA-AO-A0J4-10A-01D-A046-08 5c9098ee-d949-4b23-bcf2-d18f94b8d642 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-10A TCGA-AO-A0J4-10A-01D-A047-09 662f283c-6055-49aa-8e41-8841a416ea59 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-10A TCGA-AO-A0J4-10A-01D-A128-09 f146c30d-fce0-49bc-b684-8ad9ccaca7cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-10A TCGA-AO-A0J4-10A-01W-A053-08 9bac5fb6-9583-4e58-8d30-700697b25e1c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-10A TCGA-AO-A0J4-10A-01W-A055-09 211ddcb7-5fea-46cf-86f5-dc6d5f4cae36 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-10A TCGA-AO-A0J4-10A-01W-A055-09 211ddcb7-5fea-46cf-86f5-dc6d5f4cae36 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-10A TCGA-AO-A0J4-10A-01W-A055-09 211ddcb7-5fea-46cf-86f5-dc6d5f4cae36 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-10A TCGA-AO-A0J4-10A-01X-A052-08 efcaa4c2-f229-4869-84cc-157cda31873e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J4 TCGA-AO-A0J4-10A TCGA-AO-A0J4-10A-01X-A054-09 4e69a21e-2f91-48f6-b0de-aa4a9e7faa2c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11D-A032-05 a52eeb7a-5268-4b78-8120-442159c6e022 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11D-A032-05 a52eeb7a-5268-4b78-8120-442159c6e022 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AO-A0J5-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11D-A032-05 a52eeb7a-5268-4b78-8120-442159c6e022 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AO-A0J5-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11D-A032-05 a52eeb7a-5268-4b78-8120-442159c6e022 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AO-A0J5-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11D-A033-02 0fede346-3afb-4064-a603-caa1cb454795 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11D-A036-01 7a2353f9-e0cf-4231-8c96-1799f9547328 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11D-A036-01 7a2353f9-e0cf-4231-8c96-1799f9547328 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H02_667102.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11D-A036-01 7a2353f9-e0cf-4231-8c96-1799f9547328 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H02_667102.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11D-A036-01 7a2353f9-e0cf-4231-8c96-1799f9547328 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H02_667102.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11D-A036-01 7a2353f9-e0cf-4231-8c96-1799f9547328 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H02_667102.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11D-A036-01 7a2353f9-e0cf-4231-8c96-1799f9547328 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H02_667102.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11D-A036-01 7a2353f9-e0cf-4231-8c96-1799f9547328 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H02_667102.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11D-A036-01 7a2353f9-e0cf-4231-8c96-1799f9547328 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H02_667102.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11D-A036-01 7a2353f9-e0cf-4231-8c96-1799f9547328 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H02_667102.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11D-A044-08 b4d4696c-f895-4409-b1f1-c5679d8eb8d3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11D-A045-09 d970dc81-7406-4cf8-94bb-148f53f31825 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11R-A034-07 5d033f3f-b22f-4d10-b39b-0bae2b4db5be Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11R-A034-07 5d033f3f-b22f-4d10-b39b-0bae2b4db5be Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012384_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11R-A034-07 5d033f3f-b22f-4d10-b39b-0bae2b4db5be Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012384_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11R-A034-07 5d033f3f-b22f-4d10-b39b-0bae2b4db5be Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012384_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11R-A034-07 5d033f3f-b22f-4d10-b39b-0bae2b4db5be RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_470201.TCGA-AO-A0J5-01A-11R-A034-07.110503_UNC12-SN629_0079_AB0151ABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11R-A034-07 5d033f3f-b22f-4d10-b39b-0bae2b4db5be RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_470204.TCGA-AO-A0J5-01A-11R-A034-07.110503_UNC12-SN629_0079_AB0151ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11R-A034-07 5d033f3f-b22f-4d10-b39b-0bae2b4db5be RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_470210.TCGA-AO-A0J5-01A-11R-A034-07.110503_UNC12-SN629_0079_AB0151ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11R-A035-13 11994e15-05cc-47e8-8beb-01f85fca6737 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11R-A035-13 11994e15-05cc-47e8-8beb-01f85fca6737 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0J5-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11R-A035-13 11994e15-05cc-47e8-8beb-01f85fca6737 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0J5-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11W-A050-09 93ae73f6-c355-47be-a355-faa78c0632d4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11W-A050-09 93ae73f6-c355-47be-a355-faa78c0632d4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11W-A051-08 765aec2b-6061-44be-8101-f3760ad04014 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11X-A048-08 1b4cc341-e11e-4ad4-8745-476c0f278f6b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-01A TCGA-AO-A0J5-01A-11X-A049-09 33a7952b-6b00-415d-9fc6-04c70f33a3dd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-10A TCGA-AO-A0J5-10A-01D-A031-02 bcbe1e11-8d93-4f37-a893-e4c082e881ba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-10A TCGA-AO-A0J5-10A-01D-A037-01 237a9d78-89b8-4306-82e5-d2b051038ded Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-10A TCGA-AO-A0J5-10A-01D-A037-01 237a9d78-89b8-4306-82e5-d2b051038ded SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B04_667212.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-10A TCGA-AO-A0J5-10A-01D-A037-01 237a9d78-89b8-4306-82e5-d2b051038ded SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B04_667212.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-10A TCGA-AO-A0J5-10A-01D-A037-01 237a9d78-89b8-4306-82e5-d2b051038ded SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B04_667212.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-10A TCGA-AO-A0J5-10A-01D-A037-01 237a9d78-89b8-4306-82e5-d2b051038ded SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B04_667212.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-10A TCGA-AO-A0J5-10A-01D-A037-01 237a9d78-89b8-4306-82e5-d2b051038ded SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B04_667212.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-10A TCGA-AO-A0J5-10A-01D-A037-01 237a9d78-89b8-4306-82e5-d2b051038ded SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B04_667212.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-10A TCGA-AO-A0J5-10A-01D-A037-01 237a9d78-89b8-4306-82e5-d2b051038ded SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B04_667212.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-10A TCGA-AO-A0J5-10A-01D-A037-01 237a9d78-89b8-4306-82e5-d2b051038ded SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B04_667212.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-10A TCGA-AO-A0J5-10A-01D-A046-08 8ebca180-d4c2-42f0-a5c0-5bf0253946c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-10A TCGA-AO-A0J5-10A-01D-A047-09 9149898c-6c8f-41a7-9048-c972a825e44a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-10A TCGA-AO-A0J5-10A-01W-A053-08 f93aca40-cccc-4b4f-bc68-55195e8ef7bf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-10A TCGA-AO-A0J5-10A-01W-A055-09 7a28e38f-8fc4-4ac7-974c-03925fab2da6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-10A TCGA-AO-A0J5-10A-01W-A055-09 7a28e38f-8fc4-4ac7-974c-03925fab2da6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-10A TCGA-AO-A0J5-10A-01X-A052-08 10bbe8b1-c3e4-441f-8f63-95a85d50fcd8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J5 TCGA-AO-A0J5-10A TCGA-AO-A0J5-10A-01X-A054-09 445d2e04-353a-4c2f-832a-df2a5ae81ba7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11D-A032-05 1095a4f5-c87f-4437-8f7a-0d627d84afd1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11D-A032-05 1095a4f5-c87f-4437-8f7a-0d627d84afd1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AO-A0J6-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11D-A032-05 1095a4f5-c87f-4437-8f7a-0d627d84afd1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AO-A0J6-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11D-A032-05 1095a4f5-c87f-4437-8f7a-0d627d84afd1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AO-A0J6-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11D-A033-02 130bd773-3cb9-4dd5-a846-d056bf220811 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11D-A036-01 6fc05d70-1569-4bfa-bab2-5947d36fd71b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11D-A036-01 6fc05d70-1569-4bfa-bab2-5947d36fd71b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F04_667068.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11D-A036-01 6fc05d70-1569-4bfa-bab2-5947d36fd71b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F04_667068.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11D-A036-01 6fc05d70-1569-4bfa-bab2-5947d36fd71b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F04_667068.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11D-A036-01 6fc05d70-1569-4bfa-bab2-5947d36fd71b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F04_667068.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11D-A036-01 6fc05d70-1569-4bfa-bab2-5947d36fd71b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F04_667068.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11D-A036-01 6fc05d70-1569-4bfa-bab2-5947d36fd71b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F04_667068.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11D-A036-01 6fc05d70-1569-4bfa-bab2-5947d36fd71b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F04_667068.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11D-A036-01 6fc05d70-1569-4bfa-bab2-5947d36fd71b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F04_667068.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11D-A044-08 89b23b26-9c14-4775-8444-32a75dc12c9b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11D-A045-09 96a09cc7-3be8-4842-8c9c-3f306f5c3ae5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11D-A128-09 f69e5057-eda6-4391-ba9a-aedbf6b572da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11R-A034-07 1fe98b05-6803-4803-83cd-a59e794b956e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11R-A034-07 1fe98b05-6803-4803-83cd-a59e794b956e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012385_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11R-A034-07 1fe98b05-6803-4803-83cd-a59e794b956e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012385_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11R-A034-07 1fe98b05-6803-4803-83cd-a59e794b956e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012385_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11R-A034-07 1fe98b05-6803-4803-83cd-a59e794b956e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_470195.TCGA-AO-A0J6-01A-11R-A034-07.110503_UNC12-SN629_0079_AB0151ABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11R-A034-07 1fe98b05-6803-4803-83cd-a59e794b956e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_470198.TCGA-AO-A0J6-01A-11R-A034-07.110503_UNC12-SN629_0079_AB0151ABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11R-A034-07 1fe98b05-6803-4803-83cd-a59e794b956e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_470220.TCGA-AO-A0J6-01A-11R-A034-07.110503_UNC12-SN629_0079_AB0151ABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11R-A035-13 145eb516-5a56-4744-8da1-049946c74d65 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11R-A035-13 145eb516-5a56-4744-8da1-049946c74d65 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0J6-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11R-A035-13 145eb516-5a56-4744-8da1-049946c74d65 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0J6-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11W-A050-09 7d21a0c4-03c7-4641-8b4d-7a5877960360 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11W-A050-09 7d21a0c4-03c7-4641-8b4d-7a5877960360 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11W-A051-08 900aa476-3d36-407c-8710-f681a0b7d5d1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11X-A048-08 c4fdf4c0-6f18-4c80-97c1-271390514c57 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-01A TCGA-AO-A0J6-01A-11X-A049-09 3d746590-20ac-4d96-af1e-2980b97d237e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-10A TCGA-AO-A0J6-10A-01D-A031-02 487b8cde-49d2-460b-8116-07509c05b97a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-10A TCGA-AO-A0J6-10A-01D-A037-01 3f7ce10c-987b-4d16-82c3-671e828c84a0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-10A TCGA-AO-A0J6-10A-01D-A037-01 3f7ce10c-987b-4d16-82c3-671e828c84a0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A03_667248.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AO-A0J6 TCGA-AO-A0J6-10A TCGA-AO-A0J6-10A-01D-A037-01 3f7ce10c-987b-4d16-82c3-671e828c84a0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A03_667248.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-10A TCGA-AO-A0J6-10A-01D-A037-01 3f7ce10c-987b-4d16-82c3-671e828c84a0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A03_667248.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-10A TCGA-AO-A0J6-10A-01D-A037-01 3f7ce10c-987b-4d16-82c3-671e828c84a0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A03_667248.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-10A TCGA-AO-A0J6-10A-01D-A037-01 3f7ce10c-987b-4d16-82c3-671e828c84a0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A03_667248.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-10A TCGA-AO-A0J6-10A-01D-A037-01 3f7ce10c-987b-4d16-82c3-671e828c84a0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A03_667248.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-10A TCGA-AO-A0J6-10A-01D-A037-01 3f7ce10c-987b-4d16-82c3-671e828c84a0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A03_667248.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-10A TCGA-AO-A0J6-10A-01D-A037-01 3f7ce10c-987b-4d16-82c3-671e828c84a0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A03_667248.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-10A TCGA-AO-A0J6-10A-01D-A046-08 192cbf30-cd12-4aa9-8788-1418a2e80c00 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-10A TCGA-AO-A0J6-10A-01D-A047-09 1162b138-8c62-4c70-bc04-b277102fd887 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-10A TCGA-AO-A0J6-10A-01D-A128-09 65efed79-ce4a-4318-b8cc-b542af419b26 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-10A TCGA-AO-A0J6-10A-01W-A053-08 bc116ab6-571a-427c-82cc-21eb44f2de4c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-10A TCGA-AO-A0J6-10A-01W-A055-09 2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-10A TCGA-AO-A0J6-10A-01W-A055-09 2014e5c3-3ac5-4d79-8942-3ee4e0cbf60d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-10A TCGA-AO-A0J6-10A-01X-A052-08 56e0fc75-ed83-4e6f-9398-b7a3224e1a8d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J6 TCGA-AO-A0J6-10A TCGA-AO-A0J6-10A-01X-A054-09 ac5df876-1ed4-48f7-8034-c377e18c43c0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11D-A032-05 b1cb772a-08bb-430b-965d-1563250a9958 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11D-A032-05 b1cb772a-08bb-430b-965d-1563250a9958 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AO-A0J7-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11D-A032-05 b1cb772a-08bb-430b-965d-1563250a9958 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AO-A0J7-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11D-A032-05 b1cb772a-08bb-430b-965d-1563250a9958 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AO-A0J7-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11D-A033-02 a530aab7-e594-4755-95d9-08b70949d532 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11D-A036-01 1dcce010-051a-42dc-a569-f669660fe99a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11D-A036-01 1dcce010-051a-42dc-a569-f669660fe99a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D09_667240.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11D-A036-01 1dcce010-051a-42dc-a569-f669660fe99a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D09_667240.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11D-A036-01 1dcce010-051a-42dc-a569-f669660fe99a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D09_667240.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11D-A036-01 1dcce010-051a-42dc-a569-f669660fe99a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D09_667240.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11D-A036-01 1dcce010-051a-42dc-a569-f669660fe99a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D09_667240.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11D-A036-01 1dcce010-051a-42dc-a569-f669660fe99a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D09_667240.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11D-A036-01 1dcce010-051a-42dc-a569-f669660fe99a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D09_667240.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11D-A036-01 1dcce010-051a-42dc-a569-f669660fe99a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D09_667240.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11D-A044-08 f4716438-2fa4-43b0-ac3e-6e3632023c78 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11D-A045-09 7620414f-74a0-49b6-a9b4-bfbd6d06bfe4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11R-A034-07 542bb107-1b0c-4ace-834d-9e32ed82429c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11R-A034-07 542bb107-1b0c-4ace-834d-9e32ed82429c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012386_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11R-A034-07 542bb107-1b0c-4ace-834d-9e32ed82429c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012386_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11R-A034-07 542bb107-1b0c-4ace-834d-9e32ed82429c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012386_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11R-A034-07 542bb107-1b0c-4ace-834d-9e32ed82429c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406295.TCGA-AO-A0J7-01A-11R-A034-07.110725_UNC9-SN296_0209_BC0479ABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11R-A034-07 542bb107-1b0c-4ace-834d-9e32ed82429c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406428.TCGA-AO-A0J7-01A-11R-A034-07.110725_UNC9-SN296_0209_BC0479ABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11R-A034-07 542bb107-1b0c-4ace-834d-9e32ed82429c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406517.TCGA-AO-A0J7-01A-11R-A034-07.110725_UNC9-SN296_0209_BC0479ABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11R-A035-13 410f0e64-0356-4fa9-894a-ffa0a7e0c285 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11R-A035-13 410f0e64-0356-4fa9-894a-ffa0a7e0c285 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0J7-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11R-A035-13 410f0e64-0356-4fa9-894a-ffa0a7e0c285 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0J7-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11W-A050-09 a53056d9-e8bd-4cb1-ad67-85879ccc925d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11W-A050-09 a53056d9-e8bd-4cb1-ad67-85879ccc925d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11W-A050-09 a53056d9-e8bd-4cb1-ad67-85879ccc925d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11W-A051-08 1b4789ce-490c-40ad-a764-9bc1914d5162 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11X-A048-08 55602b51-241a-4cdf-8c79-fb9e74530aa7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-01A TCGA-AO-A0J7-01A-11X-A049-09 5f9c5b49-56b8-4565-8884-2e900f6dc1b6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-10A TCGA-AO-A0J7-10A-01D-A031-02 e0d3986e-502b-463a-b7e0-dc4783ab445d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-10A TCGA-AO-A0J7-10A-01D-A037-01 d052a6e8-2f32-49f2-9522-d0349bf0b44f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-10A TCGA-AO-A0J7-10A-01D-A037-01 d052a6e8-2f32-49f2-9522-d0349bf0b44f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C03_667120.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AO-A0J7 TCGA-AO-A0J7-10A TCGA-AO-A0J7-10A-01D-A037-01 d052a6e8-2f32-49f2-9522-d0349bf0b44f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C03_667120.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-10A TCGA-AO-A0J7-10A-01D-A037-01 d052a6e8-2f32-49f2-9522-d0349bf0b44f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C03_667120.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-10A TCGA-AO-A0J7-10A-01D-A037-01 d052a6e8-2f32-49f2-9522-d0349bf0b44f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C03_667120.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-10A TCGA-AO-A0J7-10A-01D-A037-01 d052a6e8-2f32-49f2-9522-d0349bf0b44f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C03_667120.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-10A TCGA-AO-A0J7-10A-01D-A037-01 d052a6e8-2f32-49f2-9522-d0349bf0b44f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C03_667120.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-10A TCGA-AO-A0J7-10A-01D-A037-01 d052a6e8-2f32-49f2-9522-d0349bf0b44f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C03_667120.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-10A TCGA-AO-A0J7-10A-01D-A037-01 d052a6e8-2f32-49f2-9522-d0349bf0b44f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C03_667120.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-10A TCGA-AO-A0J7-10A-01D-A046-08 a57f57cc-13f7-4233-9d35-16f852b8d89e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-10A TCGA-AO-A0J7-10A-01D-A047-09 734c2fe0-8f16-4643-864b-dbcd2e74a2fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-10A TCGA-AO-A0J7-10A-01W-A053-08 c95b35fd-ab0b-43d6-8904-b0a9f081960e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-10A TCGA-AO-A0J7-10A-01W-A055-09 30586533-e188-4eb3-8ffd-0ce7c98a1b6b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-10A TCGA-AO-A0J7-10A-01W-A055-09 30586533-e188-4eb3-8ffd-0ce7c98a1b6b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-10A TCGA-AO-A0J7-10A-01W-A055-09 30586533-e188-4eb3-8ffd-0ce7c98a1b6b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-10A TCGA-AO-A0J7-10A-01X-A052-08 d0f37099-a426-4d76-9c2d-854e946ca4ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J7 TCGA-AO-A0J7-10A TCGA-AO-A0J7-10A-01X-A054-09 c54e506e-1a92-4b5c-896c-3c78064746ba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21D-A032-05 8f537afd-86db-417a-a547-6fb02d293a16 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21D-A032-05 8f537afd-86db-417a-a547-6fb02d293a16 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AO-A0J8-01A-21D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21D-A032-05 8f537afd-86db-417a-a547-6fb02d293a16 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AO-A0J8-01A-21D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21D-A032-05 8f537afd-86db-417a-a547-6fb02d293a16 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AO-A0J8-01A-21D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21D-A033-02 f7518429-2ac5-4203-a018-af3ccc1b5559 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21D-A036-01 962ff806-5a8d-44ff-ac8b-9f158d65d014 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21D-A036-01 962ff806-5a8d-44ff-ac8b-9f158d65d014 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F06_667244.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21D-A036-01 962ff806-5a8d-44ff-ac8b-9f158d65d014 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F06_667244.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21D-A036-01 962ff806-5a8d-44ff-ac8b-9f158d65d014 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F06_667244.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21D-A036-01 962ff806-5a8d-44ff-ac8b-9f158d65d014 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F06_667244.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21D-A036-01 962ff806-5a8d-44ff-ac8b-9f158d65d014 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F06_667244.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21D-A036-01 962ff806-5a8d-44ff-ac8b-9f158d65d014 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F06_667244.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21D-A036-01 962ff806-5a8d-44ff-ac8b-9f158d65d014 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F06_667244.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21D-A036-01 962ff806-5a8d-44ff-ac8b-9f158d65d014 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F06_667244.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21D-A044-08 022260f8-19dc-4bef-839d-131d7e6d4166 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21D-A045-09 24ba5501-8097-4af6-b12c-bb6dcbe10cac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21D-A045-09 24ba5501-8097-4af6-b12c-bb6dcbe10cac Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21R-A034-07 70109263-1d2b-4abe-a582-2b28e87cde67 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21R-A034-07 70109263-1d2b-4abe-a582-2b28e87cde67 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012387_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21R-A034-07 70109263-1d2b-4abe-a582-2b28e87cde67 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012387_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21R-A034-07 70109263-1d2b-4abe-a582-2b28e87cde67 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012387_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21R-A034-07 70109263-1d2b-4abe-a582-2b28e87cde67 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_469479.TCGA-AO-A0J8-01A-21R-A034-07.110503_UNC12-SN629_0080_BC011MABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21R-A034-07 70109263-1d2b-4abe-a582-2b28e87cde67 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_469491.TCGA-AO-A0J8-01A-21R-A034-07.110503_UNC12-SN629_0080_BC011MABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21R-A034-07 70109263-1d2b-4abe-a582-2b28e87cde67 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_469572.TCGA-AO-A0J8-01A-21R-A034-07.110503_UNC12-SN629_0080_BC011MABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21R-A035-13 fd3038fe-6ea3-49af-9984-f9102230f22f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21R-A035-13 fd3038fe-6ea3-49af-9984-f9102230f22f miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0J8-01A-21R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21R-A035-13 fd3038fe-6ea3-49af-9984-f9102230f22f miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0J8-01A-21R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21W-A050-09 43fbdcf9-6848-4927-9bde-40b372ed6469 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21W-A051-08 c6969188-cb72-4fca-803c-485ba30d3461 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21X-A048-08 078d9593-338b-4b33-b275-36d775efa7fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-01A TCGA-AO-A0J8-01A-21X-A049-09 0fac8582-2b01-4199-942c-9f8a8ac735a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-10A TCGA-AO-A0J8-10A-01D-A031-02 737285b2-0de3-442f-86e7-3342da823bc6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-10A TCGA-AO-A0J8-10A-01D-A037-01 ed6d7f78-d885-4db1-a356-0c5db5e29b2d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-10A TCGA-AO-A0J8-10A-01D-A037-01 ed6d7f78-d885-4db1-a356-0c5db5e29b2d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A07_667148.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AO-A0J8 TCGA-AO-A0J8-10A TCGA-AO-A0J8-10A-01D-A037-01 ed6d7f78-d885-4db1-a356-0c5db5e29b2d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A07_667148.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-10A TCGA-AO-A0J8-10A-01D-A037-01 ed6d7f78-d885-4db1-a356-0c5db5e29b2d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A07_667148.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-10A TCGA-AO-A0J8-10A-01D-A037-01 ed6d7f78-d885-4db1-a356-0c5db5e29b2d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A07_667148.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-10A TCGA-AO-A0J8-10A-01D-A037-01 ed6d7f78-d885-4db1-a356-0c5db5e29b2d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A07_667148.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-10A TCGA-AO-A0J8-10A-01D-A037-01 ed6d7f78-d885-4db1-a356-0c5db5e29b2d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A07_667148.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-10A TCGA-AO-A0J8-10A-01D-A037-01 ed6d7f78-d885-4db1-a356-0c5db5e29b2d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A07_667148.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-10A TCGA-AO-A0J8-10A-01D-A037-01 ed6d7f78-d885-4db1-a356-0c5db5e29b2d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A07_667148.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-10A TCGA-AO-A0J8-10A-01D-A046-08 b997a043-efe4-4a45-8ce6-aad40363ee82 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-10A TCGA-AO-A0J8-10A-01D-A047-09 59bd22b4-999a-4c0a-9973-c3d8bfaea385 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-10A TCGA-AO-A0J8-10A-01W-A053-08 272a2bc2-bb20-4b0a-a754-b689340eb471 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-10A TCGA-AO-A0J8-10A-01W-A055-09 a6efdded-0dee-4407-a1b2-bdfdb1649a07 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-10A TCGA-AO-A0J8-10A-01W-A055-09 a6efdded-0dee-4407-a1b2-bdfdb1649a07 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-10A TCGA-AO-A0J8-10A-01X-A052-08 f15f45db-ea5c-4da9-b201-459d01a16201 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J8 TCGA-AO-A0J8-10A TCGA-AO-A0J8-10A-01X-A054-09 b2be8467-2554-4ef1-b327-ab05f079e486 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11D-A032-05 d9383a8d-f719-4674-bfda-50b733131e36 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11D-A032-05 d9383a8d-f719-4674-bfda-50b733131e36 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AO-A0J9-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11D-A032-05 d9383a8d-f719-4674-bfda-50b733131e36 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AO-A0J9-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11D-A032-05 d9383a8d-f719-4674-bfda-50b733131e36 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AO-A0J9-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11D-A033-02 3f8b37f2-bb26-4297-ae3d-31f087fea6e6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11D-A036-01 556981d5-78ea-4e3e-ad02-4d9f71729caa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11D-A036-01 556981d5-78ea-4e3e-ad02-4d9f71729caa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H09_667226.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11D-A036-01 556981d5-78ea-4e3e-ad02-4d9f71729caa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H09_667226.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11D-A036-01 556981d5-78ea-4e3e-ad02-4d9f71729caa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H09_667226.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11D-A036-01 556981d5-78ea-4e3e-ad02-4d9f71729caa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H09_667226.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11D-A036-01 556981d5-78ea-4e3e-ad02-4d9f71729caa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H09_667226.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11D-A036-01 556981d5-78ea-4e3e-ad02-4d9f71729caa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H09_667226.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11D-A036-01 556981d5-78ea-4e3e-ad02-4d9f71729caa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H09_667226.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11D-A036-01 556981d5-78ea-4e3e-ad02-4d9f71729caa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H09_667226.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11D-A044-08 b8aee9c1-358e-4a52-a0a3-67793ef3ea74 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11D-A045-09 9d776309-9da0-4a56-9737-78386ddca4ab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11R-A034-07 2d4b31ad-8790-426a-965b-25b74293156c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11R-A034-07 2d4b31ad-8790-426a-965b-25b74293156c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012388_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11R-A034-07 2d4b31ad-8790-426a-965b-25b74293156c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012388_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11R-A034-07 2d4b31ad-8790-426a-965b-25b74293156c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012388_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11R-A034-07 2d4b31ad-8790-426a-965b-25b74293156c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_469435.TCGA-AO-A0J9-01A-11R-A034-07.110503_UNC12-SN629_0080_BC011MABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11R-A034-07 2d4b31ad-8790-426a-965b-25b74293156c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_469472.TCGA-AO-A0J9-01A-11R-A034-07.110503_UNC12-SN629_0080_BC011MABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11R-A034-07 2d4b31ad-8790-426a-965b-25b74293156c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_469501.TCGA-AO-A0J9-01A-11R-A034-07.110503_UNC12-SN629_0080_BC011MABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11R-A035-13 2c78480b-6ee0-455f-9f0b-0bdb39e8b093 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11R-A035-13 2c78480b-6ee0-455f-9f0b-0bdb39e8b093 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0J9-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11R-A035-13 2c78480b-6ee0-455f-9f0b-0bdb39e8b093 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0J9-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11W-A050-09 9932232f-a7b0-4962-9b14-adb8316a4661 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11W-A050-09 9932232f-a7b0-4962-9b14-adb8316a4661 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11W-A050-09 9932232f-a7b0-4962-9b14-adb8316a4661 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11W-A051-08 b4411e15-81f9-4477-94f0-a6bbea569af9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11X-A048-08 72e856e9-1527-4d4b-beb2-b9cc4e10d07c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-01A TCGA-AO-A0J9-01A-11X-A049-09 9ecfa98e-df8c-404a-9462-6310658ce04a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-10A TCGA-AO-A0J9-10A-01D-A031-02 249599ae-5d38-44de-979f-481ef473ece2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-10A TCGA-AO-A0J9-10A-01D-A037-01 7a480f49-5de4-428a-be5d-70ce32b40b27 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-10A TCGA-AO-A0J9-10A-01D-A037-01 7a480f49-5de4-428a-be5d-70ce32b40b27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F11_667108.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AO-A0J9 TCGA-AO-A0J9-10A TCGA-AO-A0J9-10A-01D-A037-01 7a480f49-5de4-428a-be5d-70ce32b40b27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F11_667108.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-10A TCGA-AO-A0J9-10A-01D-A037-01 7a480f49-5de4-428a-be5d-70ce32b40b27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F11_667108.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-10A TCGA-AO-A0J9-10A-01D-A037-01 7a480f49-5de4-428a-be5d-70ce32b40b27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F11_667108.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-10A TCGA-AO-A0J9-10A-01D-A037-01 7a480f49-5de4-428a-be5d-70ce32b40b27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F11_667108.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-10A TCGA-AO-A0J9-10A-01D-A037-01 7a480f49-5de4-428a-be5d-70ce32b40b27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F11_667108.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-10A TCGA-AO-A0J9-10A-01D-A037-01 7a480f49-5de4-428a-be5d-70ce32b40b27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F11_667108.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-10A TCGA-AO-A0J9-10A-01D-A037-01 7a480f49-5de4-428a-be5d-70ce32b40b27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F11_667108.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-10A TCGA-AO-A0J9-10A-01D-A046-08 f5251699-0abc-42d0-b99e-e4c989a9b1fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-10A TCGA-AO-A0J9-10A-01D-A047-09 5e9204b9-5180-41d0-8718-73cde3f8d809 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-10A TCGA-AO-A0J9-10A-01W-A053-08 9558ec2f-1749-479c-b748-d4faff4d4941 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-10A TCGA-AO-A0J9-10A-01W-A055-09 635a03b8-f873-4ec7-bb1d-82dbcc6cb02a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-10A TCGA-AO-A0J9-10A-01W-A055-09 635a03b8-f873-4ec7-bb1d-82dbcc6cb02a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-10A TCGA-AO-A0J9-10A-01W-A055-09 635a03b8-f873-4ec7-bb1d-82dbcc6cb02a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-10A TCGA-AO-A0J9-10A-01X-A052-08 fa4f83d4-124c-4f80-bca8-ae348d467ba2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0J9 TCGA-AO-A0J9-10A TCGA-AO-A0J9-10A-01X-A054-09 aee732cb-f522-407b-809f-259b33e96b02 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0J9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11D-A058-05 cca4eb61-7912-4e48-9d2b-2e15b9c09eb7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11D-A059-01 25822371-680d-4663-98ef-ebf79e6dff4d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11D-A059-01 25822371-680d-4663-98ef-ebf79e6dff4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G12_697192.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11D-A059-01 25822371-680d-4663-98ef-ebf79e6dff4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G12_697192.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11D-A059-01 25822371-680d-4663-98ef-ebf79e6dff4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G12_697192.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11D-A059-01 25822371-680d-4663-98ef-ebf79e6dff4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G12_697192.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11D-A059-01 25822371-680d-4663-98ef-ebf79e6dff4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G12_697192.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11D-A059-01 25822371-680d-4663-98ef-ebf79e6dff4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G12_697192.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11D-A059-01 25822371-680d-4663-98ef-ebf79e6dff4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G12_697192.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11D-A059-01 25822371-680d-4663-98ef-ebf79e6dff4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G12_697192.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11D-A060-02 0b946363-2025-4c12-8c0d-2f2ece124aab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11D-A074-08 51f5dc45-b979-4e58-89bf-5769b085b41f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11D-A075-09 0e125fe2-a93a-4e40-bb94-e5eb5fc5e887 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11D-A10P-05 7dcba77e-6c2f-45a0-85ad-bc4ee0467d5f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11D-A10P-05 7dcba77e-6c2f-45a0-85ad-bc4ee0467d5f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486023_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11D-A10P-05 7dcba77e-6c2f-45a0-85ad-bc4ee0467d5f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486023_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11D-A10P-05 7dcba77e-6c2f-45a0-85ad-bc4ee0467d5f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-AO-A0JA-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11D-A10P-05 7dcba77e-6c2f-45a0-85ad-bc4ee0467d5f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-AO-A0JA-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11R-A056-07 d38a839f-06dc-40d2-81e9-3b7822e258c7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11R-A056-07 d38a839f-06dc-40d2-81e9-3b7822e258c7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012209_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11R-A056-07 d38a839f-06dc-40d2-81e9-3b7822e258c7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012209_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11R-A056-07 d38a839f-06dc-40d2-81e9-3b7822e258c7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012209_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11R-A056-07 d38a839f-06dc-40d2-81e9-3b7822e258c7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478206.TCGA-AO-A0JA-01A-11R-A056-07.110318_SN749_0047_BB039EABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11R-A056-07 d38a839f-06dc-40d2-81e9-3b7822e258c7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478219.TCGA-AO-A0JA-01A-11R-A056-07.110318_SN749_0047_BB039EABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11R-A056-07 d38a839f-06dc-40d2-81e9-3b7822e258c7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478350.TCGA-AO-A0JA-01A-11R-A056-07.110318_SN749_0047_BB039EABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11R-A057-13 4f0a3437-1144-493f-9dc7-bc7f9848c27d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11R-A057-13 4f0a3437-1144-493f-9dc7-bc7f9848c27d miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0JA-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11R-A057-13 4f0a3437-1144-493f-9dc7-bc7f9848c27d miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0JA-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11W-A070-08 4ee57f1e-0ab3-4920-93e2-7710950fa78e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11W-A071-09 0215d4f1-6697-4e8f-afc4-ff7c6439e56d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11W-A071-09 0215d4f1-6697-4e8f-afc4-ff7c6439e56d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11X-A072-08 e8add0f1-a415-4ae4-b2a4-4391db2c87ea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-01A TCGA-AO-A0JA-01A-11X-A073-09 c66caefd-ba28-4dfd-9adb-88cb9aa91fff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-10A TCGA-AO-A0JA-10A-01D-A059-01 d034e628-40ff-412c-a424-0fe4a3a797aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-10A TCGA-AO-A0JA-10A-01D-A059-01 d034e628-40ff-412c-a424-0fe4a3a797aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F08_697198.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-AO-A0JA TCGA-AO-A0JA-10A TCGA-AO-A0JA-10A-01D-A059-01 d034e628-40ff-412c-a424-0fe4a3a797aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F08_697198.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-10A TCGA-AO-A0JA-10A-01D-A059-01 d034e628-40ff-412c-a424-0fe4a3a797aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F08_697198.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-10A TCGA-AO-A0JA-10A-01D-A059-01 d034e628-40ff-412c-a424-0fe4a3a797aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F08_697198.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-10A TCGA-AO-A0JA-10A-01D-A059-01 d034e628-40ff-412c-a424-0fe4a3a797aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F08_697198.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-10A TCGA-AO-A0JA-10A-01D-A059-01 d034e628-40ff-412c-a424-0fe4a3a797aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F08_697198.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-10A TCGA-AO-A0JA-10A-01D-A059-01 d034e628-40ff-412c-a424-0fe4a3a797aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F08_697198.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-10A TCGA-AO-A0JA-10A-01D-A059-01 d034e628-40ff-412c-a424-0fe4a3a797aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F08_697198.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-10A TCGA-AO-A0JA-10A-01D-A060-02 7f526696-9b0d-481c-a25a-93ccb6d429f3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-10A TCGA-AO-A0JA-10A-01D-A074-08 5676b49c-c8cf-4dad-a6c7-11feae44ba74 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-10A TCGA-AO-A0JA-10A-01D-A075-09 d3fe7cf8-9483-48f4-91fd-cf93ce37eb3e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-10A TCGA-AO-A0JA-10A-01W-A070-08 26a68713-64d2-4c07-a756-8fc83ba9136e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-10A TCGA-AO-A0JA-10A-01W-A071-09 55ed9925-691d-43df-8472-2d6a52bc9068 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-10A TCGA-AO-A0JA-10A-01W-A071-09 55ed9925-691d-43df-8472-2d6a52bc9068 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-10A TCGA-AO-A0JA-10A-01X-A072-08 35438a90-5004-4ed5-bf68-07b94e56ab14 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JA TCGA-AO-A0JA-10A TCGA-AO-A0JA-10A-01X-A073-09 7e26de65-6876-4417-a0e0-24cc19de39b4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11D-A058-05 eb8a2364-f6f4-4375-81c0-609f96d5e651 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11D-A059-01 747d51ed-f576-421b-8e92-868a35b01cdb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11D-A059-01 747d51ed-f576-421b-8e92-868a35b01cdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H03_697088.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11D-A059-01 747d51ed-f576-421b-8e92-868a35b01cdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H03_697088.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11D-A059-01 747d51ed-f576-421b-8e92-868a35b01cdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H03_697088.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11D-A059-01 747d51ed-f576-421b-8e92-868a35b01cdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H03_697088.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11D-A059-01 747d51ed-f576-421b-8e92-868a35b01cdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H03_697088.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11D-A059-01 747d51ed-f576-421b-8e92-868a35b01cdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H03_697088.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11D-A059-01 747d51ed-f576-421b-8e92-868a35b01cdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H03_697088.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11D-A059-01 747d51ed-f576-421b-8e92-868a35b01cdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H03_697088.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11D-A060-02 e823fe53-f363-483b-9742-f6b61f490e85 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11D-A074-08 de29641d-d3cb-4150-9462-80078e12712c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11D-A075-09 67e47595-4eee-417e-8871-6d172f173449 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11D-A10P-05 69b7278b-de71-404e-96e8-8caf8ff5ca2c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11D-A10P-05 69b7278b-de71-404e-96e8-8caf8ff5ca2c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486014_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11D-A10P-05 69b7278b-de71-404e-96e8-8caf8ff5ca2c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486014_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11D-A10P-05 69b7278b-de71-404e-96e8-8caf8ff5ca2c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-AO-A0JB-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11D-A10P-05 69b7278b-de71-404e-96e8-8caf8ff5ca2c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-AO-A0JB-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11R-A056-07 28ff8f2f-d925-4f12-9d3b-c35711f4a91f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11R-A056-07 28ff8f2f-d925-4f12-9d3b-c35711f4a91f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012482_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11R-A056-07 28ff8f2f-d925-4f12-9d3b-c35711f4a91f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012482_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11R-A056-07 28ff8f2f-d925-4f12-9d3b-c35711f4a91f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012482_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11R-A057-13 4edf2e61-b3ed-49be-b734-486ce078a3a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11R-A057-13 4edf2e61-b3ed-49be-b734-486ce078a3a6 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0JB-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11R-A057-13 4edf2e61-b3ed-49be-b734-486ce078a3a6 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0JB-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11W-A070-08 40855050-5b06-4e08-9e28-79d618219d89 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11W-A071-09 8f4f06be-2a16-4ae2-9dd4-5d87f480810b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11W-A071-09 8f4f06be-2a16-4ae2-9dd4-5d87f480810b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11X-A072-08 df9485f0-9fa9-48f5-b04e-674891d50014 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-01A TCGA-AO-A0JB-01A-11X-A073-09 51ee5906-129a-4ec3-b973-7709aa382323 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-10A TCGA-AO-A0JB-10A-01D-A059-01 84209607-6090-4bf0-b8b2-911e288d0d45 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-10A TCGA-AO-A0JB-10A-01D-A059-01 84209607-6090-4bf0-b8b2-911e288d0d45 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D10_697056.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-AO-A0JB TCGA-AO-A0JB-10A TCGA-AO-A0JB-10A-01D-A059-01 84209607-6090-4bf0-b8b2-911e288d0d45 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D10_697056.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-10A TCGA-AO-A0JB-10A-01D-A059-01 84209607-6090-4bf0-b8b2-911e288d0d45 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D10_697056.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-10A TCGA-AO-A0JB-10A-01D-A059-01 84209607-6090-4bf0-b8b2-911e288d0d45 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D10_697056.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-10A TCGA-AO-A0JB-10A-01D-A059-01 84209607-6090-4bf0-b8b2-911e288d0d45 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D10_697056.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-10A TCGA-AO-A0JB-10A-01D-A059-01 84209607-6090-4bf0-b8b2-911e288d0d45 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D10_697056.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-10A TCGA-AO-A0JB-10A-01D-A059-01 84209607-6090-4bf0-b8b2-911e288d0d45 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D10_697056.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-10A TCGA-AO-A0JB-10A-01D-A059-01 84209607-6090-4bf0-b8b2-911e288d0d45 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D10_697056.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-10A TCGA-AO-A0JB-10A-01D-A060-02 12cfa460-6171-46fc-856e-15b654b8ee9c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-10A TCGA-AO-A0JB-10A-01D-A074-08 648ed408-2c17-486f-98f6-7b24bf09a1d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-10A TCGA-AO-A0JB-10A-01D-A075-09 911bd9ee-f47e-48b3-9514-8458ab8d6e13 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-10A TCGA-AO-A0JB-10A-01W-A070-08 b1647f3d-9598-4ad7-9da4-818e210c9ce2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-10A TCGA-AO-A0JB-10A-01W-A071-09 f51b5a75-a541-4589-b883-7f651a2612c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-10A TCGA-AO-A0JB-10A-01W-A071-09 f51b5a75-a541-4589-b883-7f651a2612c9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-10A TCGA-AO-A0JB-10A-01X-A072-08 b16d1006-47fb-4312-ab01-904734383928 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JB TCGA-AO-A0JB-10A TCGA-AO-A0JB-10A-01X-A073-09 cb055979-2c4a-4abb-a75a-67384b2350dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11D-A058-05 76156f47-98da-44b6-b0b8-62ad0dc2176f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11D-A059-01 6ef9047c-f0c6-4414-8025-2ea0dc914014 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11D-A059-01 6ef9047c-f0c6-4414-8025-2ea0dc914014 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D12_697044.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11D-A059-01 6ef9047c-f0c6-4414-8025-2ea0dc914014 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D12_697044.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11D-A059-01 6ef9047c-f0c6-4414-8025-2ea0dc914014 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D12_697044.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11D-A059-01 6ef9047c-f0c6-4414-8025-2ea0dc914014 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D12_697044.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11D-A059-01 6ef9047c-f0c6-4414-8025-2ea0dc914014 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D12_697044.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11D-A059-01 6ef9047c-f0c6-4414-8025-2ea0dc914014 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D12_697044.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11D-A059-01 6ef9047c-f0c6-4414-8025-2ea0dc914014 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D12_697044.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11D-A059-01 6ef9047c-f0c6-4414-8025-2ea0dc914014 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D12_697044.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11D-A060-02 ae4c953e-fecf-48c7-b2d0-249fa4e01137 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11D-A074-08 d9dc925d-20db-4940-9f8d-0aa897b7986d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11D-A075-09 b51cfaf4-748e-4c60-92ba-f0be2d40d072 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11D-A10P-05 505a6320-f1f2-4213-9dee-f515edc478bd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11D-A10P-05 505a6320-f1f2-4213-9dee-f515edc478bd DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486014_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11D-A10P-05 505a6320-f1f2-4213-9dee-f515edc478bd DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486014_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11D-A10P-05 505a6320-f1f2-4213-9dee-f515edc478bd DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-AO-A0JC-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11D-A10P-05 505a6320-f1f2-4213-9dee-f515edc478bd DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-AO-A0JC-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11R-A056-07 0f578102-ede7-46ad-ae1f-3c7351edb491 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11R-A056-07 0f578102-ede7-46ad-ae1f-3c7351edb491 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012499_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11R-A056-07 0f578102-ede7-46ad-ae1f-3c7351edb491 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012499_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11R-A056-07 0f578102-ede7-46ad-ae1f-3c7351edb491 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012499_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11R-A056-07 0f578102-ede7-46ad-ae1f-3c7351edb491 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478191.TCGA-AO-A0JC-01A-11R-A056-07.110318_SN749_0047_BB039EABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11R-A056-07 0f578102-ede7-46ad-ae1f-3c7351edb491 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478199.TCGA-AO-A0JC-01A-11R-A056-07.110318_SN749_0047_BB039EABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11R-A056-07 0f578102-ede7-46ad-ae1f-3c7351edb491 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478248.TCGA-AO-A0JC-01A-11R-A056-07.110318_SN749_0047_BB039EABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11R-A057-13 d0daba12-f5dd-425c-9bd1-579cd39b879d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11R-A057-13 d0daba12-f5dd-425c-9bd1-579cd39b879d miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0JC-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11R-A057-13 d0daba12-f5dd-425c-9bd1-579cd39b879d miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0JC-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11W-A070-08 fbfe6b22-bed1-490a-bfc3-333ed40c1218 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11W-A071-09 120f55df-5d1d-4073-a21a-632c892d3da9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11W-A071-09 120f55df-5d1d-4073-a21a-632c892d3da9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11X-A072-08 a5de205a-62e1-446c-a022-bc75513ef62f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-01A TCGA-AO-A0JC-01A-11X-A073-09 8fd305f8-e34a-4141-b5f6-10c1e4c0ef9d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-10A TCGA-AO-A0JC-10A-01D-A059-01 4b5bed6f-affc-476d-8e54-9f9e1c67b41f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-10A TCGA-AO-A0JC-10A-01D-A059-01 4b5bed6f-affc-476d-8e54-9f9e1c67b41f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H05_697182.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-AO-A0JC TCGA-AO-A0JC-10A TCGA-AO-A0JC-10A-01D-A059-01 4b5bed6f-affc-476d-8e54-9f9e1c67b41f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H05_697182.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-10A TCGA-AO-A0JC-10A-01D-A059-01 4b5bed6f-affc-476d-8e54-9f9e1c67b41f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H05_697182.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-10A TCGA-AO-A0JC-10A-01D-A059-01 4b5bed6f-affc-476d-8e54-9f9e1c67b41f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H05_697182.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-10A TCGA-AO-A0JC-10A-01D-A059-01 4b5bed6f-affc-476d-8e54-9f9e1c67b41f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H05_697182.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-10A TCGA-AO-A0JC-10A-01D-A059-01 4b5bed6f-affc-476d-8e54-9f9e1c67b41f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H05_697182.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-10A TCGA-AO-A0JC-10A-01D-A059-01 4b5bed6f-affc-476d-8e54-9f9e1c67b41f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H05_697182.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-10A TCGA-AO-A0JC-10A-01D-A059-01 4b5bed6f-affc-476d-8e54-9f9e1c67b41f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H05_697182.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-10A TCGA-AO-A0JC-10A-01D-A060-02 4530e3ba-75a4-4358-b094-a224d953c8db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-10A TCGA-AO-A0JC-10A-01D-A074-08 3518a1ae-4467-4764-94bf-49d48fbd9478 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-10A TCGA-AO-A0JC-10A-01D-A075-09 d56675d0-7422-4391-9b85-44df967ad026 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-10A TCGA-AO-A0JC-10A-01W-A070-08 7985fdf3-4c70-46fa-b8dd-64f58f37a5b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-10A TCGA-AO-A0JC-10A-01W-A071-09 a9132e75-b777-4399-969c-d1e8fab91117 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-10A TCGA-AO-A0JC-10A-01W-A071-09 a9132e75-b777-4399-969c-d1e8fab91117 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-10A TCGA-AO-A0JC-10A-01X-A072-08 d6c51ad8-3e06-4829-a494-5e5560db2661 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JC TCGA-AO-A0JC-10A TCGA-AO-A0JC-10A-01X-A073-09 1634f9cd-5b5e-4ab9-a7dc-53f06361c5e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11D-A058-05 69b469ed-401a-43ae-ab70-e3e650df2644 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11D-A059-01 ce2e1bd2-6d7a-45d2-92ca-e2550974cfc8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11D-A059-01 ce2e1bd2-6d7a-45d2-92ca-e2550974cfc8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E03_697050.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11D-A059-01 ce2e1bd2-6d7a-45d2-92ca-e2550974cfc8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E03_697050.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11D-A059-01 ce2e1bd2-6d7a-45d2-92ca-e2550974cfc8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E03_697050.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11D-A059-01 ce2e1bd2-6d7a-45d2-92ca-e2550974cfc8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E03_697050.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11D-A059-01 ce2e1bd2-6d7a-45d2-92ca-e2550974cfc8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E03_697050.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11D-A059-01 ce2e1bd2-6d7a-45d2-92ca-e2550974cfc8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E03_697050.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11D-A059-01 ce2e1bd2-6d7a-45d2-92ca-e2550974cfc8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E03_697050.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11D-A059-01 ce2e1bd2-6d7a-45d2-92ca-e2550974cfc8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E03_697050.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11D-A060-02 a3e91783-1371-4ac2-a287-1fcc80b74d07 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11D-A074-08 a6f10b39-2ff2-48a4-a5b4-8f5f49860ed4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11D-A075-09 b21911ad-cf03-444b-a13c-b14000be574c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11D-A10P-05 deb12955-614e-4735-bafd-20d4ebf1a384 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11D-A10P-05 deb12955-614e-4735-bafd-20d4ebf1a384 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486023_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11D-A10P-05 deb12955-614e-4735-bafd-20d4ebf1a384 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486023_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11D-A10P-05 deb12955-614e-4735-bafd-20d4ebf1a384 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-AO-A0JD-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11D-A10P-05 deb12955-614e-4735-bafd-20d4ebf1a384 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-AO-A0JD-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11R-A056-07 0bef9bfc-43d3-4ac9-a60f-9b65623f7e37 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11R-A056-07 0bef9bfc-43d3-4ac9-a60f-9b65623f7e37 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012505_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11R-A056-07 0bef9bfc-43d3-4ac9-a60f-9b65623f7e37 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012505_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11R-A056-07 0bef9bfc-43d3-4ac9-a60f-9b65623f7e37 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012505_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11R-A056-07 0bef9bfc-43d3-4ac9-a60f-9b65623f7e37 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478186.TCGA-AO-A0JD-01A-11R-A056-07.110318_SN749_0047_BB039EABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11R-A056-07 0bef9bfc-43d3-4ac9-a60f-9b65623f7e37 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478189.TCGA-AO-A0JD-01A-11R-A056-07.110318_SN749_0047_BB039EABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11R-A056-07 0bef9bfc-43d3-4ac9-a60f-9b65623f7e37 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478267.TCGA-AO-A0JD-01A-11R-A056-07.110318_SN749_0047_BB039EABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11R-A057-13 ffde17b2-e2e0-434e-b694-d9dbe7a67b4d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11R-A057-13 ffde17b2-e2e0-434e-b694-d9dbe7a67b4d miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0JD-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11R-A057-13 ffde17b2-e2e0-434e-b694-d9dbe7a67b4d miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0JD-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11W-A070-08 f1956f09-3263-4f49-a443-547872b84b1f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11W-A071-09 9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11W-A071-09 9d3ad8d0-ddd3-44d2-ba0e-0b283a4fbf32 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11X-A072-08 5866ad0b-a3ea-46b4-81a8-bd53ca121a42 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-01A TCGA-AO-A0JD-01A-11X-A073-09 302b14cc-753e-43c2-bee5-3c39df92b80c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-10A TCGA-AO-A0JD-10A-01D-A059-01 06f860c9-8baa-4c7f-b3ca-1b59f73e288d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-10A TCGA-AO-A0JD-10A-01D-A059-01 06f860c9-8baa-4c7f-b3ca-1b59f73e288d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H06_697098.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-AO-A0JD TCGA-AO-A0JD-10A TCGA-AO-A0JD-10A-01D-A059-01 06f860c9-8baa-4c7f-b3ca-1b59f73e288d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H06_697098.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-10A TCGA-AO-A0JD-10A-01D-A059-01 06f860c9-8baa-4c7f-b3ca-1b59f73e288d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H06_697098.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-10A TCGA-AO-A0JD-10A-01D-A059-01 06f860c9-8baa-4c7f-b3ca-1b59f73e288d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H06_697098.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-10A TCGA-AO-A0JD-10A-01D-A059-01 06f860c9-8baa-4c7f-b3ca-1b59f73e288d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H06_697098.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-10A TCGA-AO-A0JD-10A-01D-A059-01 06f860c9-8baa-4c7f-b3ca-1b59f73e288d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H06_697098.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-10A TCGA-AO-A0JD-10A-01D-A059-01 06f860c9-8baa-4c7f-b3ca-1b59f73e288d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H06_697098.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-10A TCGA-AO-A0JD-10A-01D-A059-01 06f860c9-8baa-4c7f-b3ca-1b59f73e288d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H06_697098.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-10A TCGA-AO-A0JD-10A-01D-A060-02 4c9f7051-7c8e-4f57-b063-b8be335a2cd3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-10A TCGA-AO-A0JD-10A-01D-A074-08 d0b50882-d26e-46f1-9f8e-4ecc931a5ae2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-10A TCGA-AO-A0JD-10A-01D-A075-09 f59356d2-c954-46d3-b4e6-8065b0a8c6e2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-10A TCGA-AO-A0JD-10A-01W-A070-08 2478c7b0-bda5-4d4c-aca3-608472147859 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-10A TCGA-AO-A0JD-10A-01W-A071-09 b3d6fcbb-a58c-488b-81d0-3af21736e84f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-10A TCGA-AO-A0JD-10A-01W-A071-09 b3d6fcbb-a58c-488b-81d0-3af21736e84f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-10A TCGA-AO-A0JD-10A-01X-A072-08 59b4f38f-def6-45ea-a63b-7c47f56ec806 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JD TCGA-AO-A0JD-10A TCGA-AO-A0JD-10A-01X-A073-09 6964b8fd-9a04-49c8-a5a8-5082172a90bc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11D-A058-05 caf384ff-ae83-46ec-b7d2-1fb9c38396ee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11D-A059-01 3110bb7f-d80d-4f08-9758-d90368f07cf0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11D-A059-01 3110bb7f-d80d-4f08-9758-d90368f07cf0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E09_697144.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11D-A059-01 3110bb7f-d80d-4f08-9758-d90368f07cf0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E09_697144.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11D-A059-01 3110bb7f-d80d-4f08-9758-d90368f07cf0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E09_697144.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11D-A059-01 3110bb7f-d80d-4f08-9758-d90368f07cf0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E09_697144.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11D-A059-01 3110bb7f-d80d-4f08-9758-d90368f07cf0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E09_697144.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11D-A059-01 3110bb7f-d80d-4f08-9758-d90368f07cf0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E09_697144.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11D-A059-01 3110bb7f-d80d-4f08-9758-d90368f07cf0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E09_697144.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11D-A059-01 3110bb7f-d80d-4f08-9758-d90368f07cf0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E09_697144.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11D-A060-02 e107ab0d-6c98-484b-88ec-14508c3ddee6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11D-A074-08 adfec22f-c0ee-4ec1-8ac7-8588daf53e8d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11D-A075-09 5ab05d56-9810-42e7-a22f-42d6b61a86e0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11D-A10P-05 aa97b7ed-3845-409f-acec-dfe1679cf4a8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11D-A10P-05 aa97b7ed-3845-409f-acec-dfe1679cf4a8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486019_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11D-A10P-05 aa97b7ed-3845-409f-acec-dfe1679cf4a8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486019_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11D-A10P-05 aa97b7ed-3845-409f-acec-dfe1679cf4a8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-AO-A0JE-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11D-A10P-05 aa97b7ed-3845-409f-acec-dfe1679cf4a8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-AO-A0JE-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11R-A056-07 d73174ef-182c-48b9-af79-dfb457d5b7be Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11R-A056-07 d73174ef-182c-48b9-af79-dfb457d5b7be Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012511_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11R-A056-07 d73174ef-182c-48b9-af79-dfb457d5b7be Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012511_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11R-A056-07 d73174ef-182c-48b9-af79-dfb457d5b7be Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012511_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11R-A056-07 d73174ef-182c-48b9-af79-dfb457d5b7be RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478184.TCGA-AO-A0JE-01A-11R-A056-07.110318_SN749_0047_BB039EABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11R-A056-07 d73174ef-182c-48b9-af79-dfb457d5b7be RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478201.TCGA-AO-A0JE-01A-11R-A056-07.110318_SN749_0047_BB039EABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11R-A056-07 d73174ef-182c-48b9-af79-dfb457d5b7be RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478297.TCGA-AO-A0JE-01A-11R-A056-07.110318_SN749_0047_BB039EABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11R-A057-13 8f49ee3d-69b8-4961-be26-55b18d80c799 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11R-A057-13 8f49ee3d-69b8-4961-be26-55b18d80c799 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0JE-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11R-A057-13 8f49ee3d-69b8-4961-be26-55b18d80c799 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0JE-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11W-A070-08 f9ce11a3-bb9e-4fd1-95d7-4f4faaee34a9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11W-A071-09 4f311714-ebb4-47fb-b471-62c6951d9066 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11W-A071-09 4f311714-ebb4-47fb-b471-62c6951d9066 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11X-A072-08 2c94c559-de31-48b9-99a7-7d208ee65124 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-01A TCGA-AO-A0JE-01A-11X-A073-09 ff02ea11-d5eb-437c-b9a3-a22e165d3b2c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-10A TCGA-AO-A0JE-10A-01D-A059-01 5b2531f7-457f-49c6-82e0-175ae1be50a5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-10A TCGA-AO-A0JE-10A-01D-A059-01 5b2531f7-457f-49c6-82e0-175ae1be50a5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H09_697118.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-AO-A0JE TCGA-AO-A0JE-10A TCGA-AO-A0JE-10A-01D-A059-01 5b2531f7-457f-49c6-82e0-175ae1be50a5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H09_697118.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-10A TCGA-AO-A0JE-10A-01D-A059-01 5b2531f7-457f-49c6-82e0-175ae1be50a5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H09_697118.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-10A TCGA-AO-A0JE-10A-01D-A059-01 5b2531f7-457f-49c6-82e0-175ae1be50a5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H09_697118.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-10A TCGA-AO-A0JE-10A-01D-A059-01 5b2531f7-457f-49c6-82e0-175ae1be50a5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H09_697118.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-10A TCGA-AO-A0JE-10A-01D-A059-01 5b2531f7-457f-49c6-82e0-175ae1be50a5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H09_697118.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-10A TCGA-AO-A0JE-10A-01D-A059-01 5b2531f7-457f-49c6-82e0-175ae1be50a5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H09_697118.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-10A TCGA-AO-A0JE-10A-01D-A059-01 5b2531f7-457f-49c6-82e0-175ae1be50a5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H09_697118.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-10A TCGA-AO-A0JE-10A-01D-A060-02 6a982e2b-01a4-4900-bc36-8e69f74cc8fa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-10A TCGA-AO-A0JE-10A-01D-A074-08 cc1368fe-5ebe-4006-b597-ab56c6b6570c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-10A TCGA-AO-A0JE-10A-01D-A075-09 104e1a23-7443-46a5-89b7-a2553688abf8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-10A TCGA-AO-A0JE-10A-01W-A070-08 92a68f42-60e1-4f9a-9cb0-5fdb4a52363e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-10A TCGA-AO-A0JE-10A-01W-A071-09 f08265fa-cf7d-4d5b-a516-a319b0595cc1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-10A TCGA-AO-A0JE-10A-01W-A071-09 f08265fa-cf7d-4d5b-a516-a319b0595cc1 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-10A TCGA-AO-A0JE-10A-01X-A072-08 909dd419-2fbe-4902-966a-c2ec2851620b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JE TCGA-AO-A0JE-10A TCGA-AO-A0JE-10A-01X-A073-09 b68b1bd5-83bd-4b3d-93d7-59c015e39553 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11D-A058-05 277d6c10-6cbf-4ca1-99c9-08eb4db68ceb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11D-A059-01 d075dd35-f392-4092-8e32-3f4fb622ccb1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11D-A059-01 d075dd35-f392-4092-8e32-3f4fb622ccb1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A09_697146.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11D-A059-01 d075dd35-f392-4092-8e32-3f4fb622ccb1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A09_697146.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11D-A059-01 d075dd35-f392-4092-8e32-3f4fb622ccb1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A09_697146.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11D-A059-01 d075dd35-f392-4092-8e32-3f4fb622ccb1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A09_697146.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11D-A059-01 d075dd35-f392-4092-8e32-3f4fb622ccb1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A09_697146.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11D-A059-01 d075dd35-f392-4092-8e32-3f4fb622ccb1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A09_697146.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11D-A059-01 d075dd35-f392-4092-8e32-3f4fb622ccb1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A09_697146.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11D-A059-01 d075dd35-f392-4092-8e32-3f4fb622ccb1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A09_697146.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11D-A060-02 bdaa1600-1b4f-4bba-b4d6-a4d169b029d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11D-A074-08 107488e8-b93c-4732-a708-37b9de50e446 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11D-A075-09 9797159a-af16-467a-af3b-916a0f59c1a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11D-A10P-05 e3f1070b-c50e-4109-881f-0092ba72edf5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11D-A10P-05 e3f1070b-c50e-4109-881f-0092ba72edf5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486023_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11D-A10P-05 e3f1070b-c50e-4109-881f-0092ba72edf5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486023_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11D-A10P-05 e3f1070b-c50e-4109-881f-0092ba72edf5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-AO-A0JF-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11D-A10P-05 e3f1070b-c50e-4109-881f-0092ba72edf5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-AO-A0JF-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11R-A056-07 3389d4b9-0190-4a69-a647-a6d53e3c96be Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11R-A056-07 3389d4b9-0190-4a69-a647-a6d53e3c96be Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012517_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11R-A056-07 3389d4b9-0190-4a69-a647-a6d53e3c96be Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012517_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11R-A056-07 3389d4b9-0190-4a69-a647-a6d53e3c96be Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012517_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11R-A056-07 3389d4b9-0190-4a69-a647-a6d53e3c96be RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478168.TCGA-AO-A0JF-01A-11R-A056-07.110318_SN749_0047_BB039EABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11R-A056-07 3389d4b9-0190-4a69-a647-a6d53e3c96be RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478182.TCGA-AO-A0JF-01A-11R-A056-07.110318_SN749_0047_BB039EABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11R-A056-07 3389d4b9-0190-4a69-a647-a6d53e3c96be RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478220.TCGA-AO-A0JF-01A-11R-A056-07.110318_SN749_0047_BB039EABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11R-A057-13 7fd1d8a1-895a-4c6f-a449-e0891c2fb104 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11R-A057-13 7fd1d8a1-895a-4c6f-a449-e0891c2fb104 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0JF-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11R-A057-13 7fd1d8a1-895a-4c6f-a449-e0891c2fb104 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0JF-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11W-A070-08 1a5917a2-26f4-464d-8f52-2e3f52308243 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11W-A071-09 191caa1a-5ab8-4db5-b42a-f1c5964b0b0d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11W-A071-09 191caa1a-5ab8-4db5-b42a-f1c5964b0b0d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11X-A072-08 e4b29e61-997f-4c85-91ad-b43fb37aad77 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-01A TCGA-AO-A0JF-01A-11X-A073-09 ed2ad0c5-244b-4e51-85a9-683945df7fb6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-10A TCGA-AO-A0JF-10A-01D-A059-01 b5524298-9e76-4b8a-915a-6518aa64ed4f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-10A TCGA-AO-A0JF-10A-01D-A059-01 b5524298-9e76-4b8a-915a-6518aa64ed4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A11_697156.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-AO-A0JF TCGA-AO-A0JF-10A TCGA-AO-A0JF-10A-01D-A059-01 b5524298-9e76-4b8a-915a-6518aa64ed4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A11_697156.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-10A TCGA-AO-A0JF-10A-01D-A059-01 b5524298-9e76-4b8a-915a-6518aa64ed4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A11_697156.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-10A TCGA-AO-A0JF-10A-01D-A059-01 b5524298-9e76-4b8a-915a-6518aa64ed4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A11_697156.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-10A TCGA-AO-A0JF-10A-01D-A059-01 b5524298-9e76-4b8a-915a-6518aa64ed4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A11_697156.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-10A TCGA-AO-A0JF-10A-01D-A059-01 b5524298-9e76-4b8a-915a-6518aa64ed4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A11_697156.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-10A TCGA-AO-A0JF-10A-01D-A059-01 b5524298-9e76-4b8a-915a-6518aa64ed4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A11_697156.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-10A TCGA-AO-A0JF-10A-01D-A059-01 b5524298-9e76-4b8a-915a-6518aa64ed4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A11_697156.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-10A TCGA-AO-A0JF-10A-01D-A060-02 85f3a9d5-e0b8-47b2-b525-5c8177f22c46 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-10A TCGA-AO-A0JF-10A-01D-A074-08 aec67f09-f91b-49da-9c75-1d69cb905976 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-10A TCGA-AO-A0JF-10A-01D-A075-09 90a8a44b-0a26-456a-a167-8ca979d78d30 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-10A TCGA-AO-A0JF-10A-01W-A070-08 7bea06f4-89e3-4338-909f-67a4f187abe3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-10A TCGA-AO-A0JF-10A-01W-A071-09 58109f2e-3c8d-4313-bc3e-1de6c5b245c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-10A TCGA-AO-A0JF-10A-01W-A071-09 58109f2e-3c8d-4313-bc3e-1de6c5b245c4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-10A TCGA-AO-A0JF-10A-01X-A072-08 6764ebd2-291d-4dcb-9ba4-cd33516d6f02 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JF TCGA-AO-A0JF-10A TCGA-AO-A0JF-10A-01X-A073-09 ab28b073-9137-49f5-b8aa-21fbb5791eb9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31D-A086-02 78e23eb9-4f95-40fa-8c1b-6ca33a13f861 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31D-A087-01 fda181a5-c1fa-4e2a-8df5-57b5cd18b0e0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31D-A087-01 fda181a5-c1fa-4e2a-8df5-57b5cd18b0e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F02_698102.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31D-A087-01 fda181a5-c1fa-4e2a-8df5-57b5cd18b0e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F02_698102.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31D-A087-01 fda181a5-c1fa-4e2a-8df5-57b5cd18b0e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F02_698102.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31D-A087-01 fda181a5-c1fa-4e2a-8df5-57b5cd18b0e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F02_698102.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31D-A087-01 fda181a5-c1fa-4e2a-8df5-57b5cd18b0e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F02_698102.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31D-A087-01 fda181a5-c1fa-4e2a-8df5-57b5cd18b0e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F02_698102.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31D-A087-01 fda181a5-c1fa-4e2a-8df5-57b5cd18b0e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F02_698102.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31D-A087-01 fda181a5-c1fa-4e2a-8df5-57b5cd18b0e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F02_698102.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31D-A088-05 5b9c93cc-cf5e-4498-b623-6b938426ad8b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31D-A099-09 cf7ec093-5040-43db-949c-f426795a7488 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31D-A099-09 cf7ec093-5040-43db-949c-f426795a7488 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31D-A099-09 cf7ec093-5040-43db-949c-f426795a7488 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31D-A10P-05 3f15f7d3-37bc-4b74-9d1f-95eadd8725af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31D-A10P-05 3f15f7d3-37bc-4b74-9d1f-95eadd8725af DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791004_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31D-A10P-05 3f15f7d3-37bc-4b74-9d1f-95eadd8725af DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791004_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31D-A10P-05 3f15f7d3-37bc-4b74-9d1f-95eadd8725af DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-AO-A0JG-01A-31D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31D-A10P-05 3f15f7d3-37bc-4b74-9d1f-95eadd8725af DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-AO-A0JG-01A-31D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31R-A084-07 97b5ef6f-d621-4093-ab77-d60dcf706173 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31R-A084-07 97b5ef6f-d621-4093-ab77-d60dcf706173 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012584_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31R-A084-07 97b5ef6f-d621-4093-ab77-d60dcf706173 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012584_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31R-A084-07 97b5ef6f-d621-4093-ab77-d60dcf706173 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012584_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31R-A084-07 97b5ef6f-d621-4093-ab77-d60dcf706173 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477709.TCGA-AO-A0JG-01A-31R-A084-07.110325_UNC13-SN749_0047_AB02CWABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31R-A084-07 97b5ef6f-d621-4093-ab77-d60dcf706173 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477728.TCGA-AO-A0JG-01A-31R-A084-07.110325_UNC13-SN749_0047_AB02CWABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31R-A084-07 97b5ef6f-d621-4093-ab77-d60dcf706173 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477892.TCGA-AO-A0JG-01A-31R-A084-07.110325_UNC13-SN749_0047_AB02CWABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31R-A085-13 18b9c782-ad6e-4226-ac51-9d91f9f3e0ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31R-A085-13 18b9c782-ad6e-4226-ac51-9d91f9f3e0ec miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0JG-01A-31R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31R-A085-13 18b9c782-ad6e-4226-ac51-9d91f9f3e0ec miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0JG-01A-31R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31W-A097-09 8e9e6885-fcdb-4338-a1e6-2b664f637b3f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-01A TCGA-AO-A0JG-01A-31X-A098-09 38bd9520-0ad1-4508-a9e7-17ee03527e91 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-10A TCGA-AO-A0JG-10A-01D-A086-02 3182aaea-1e8b-49ac-8e29-13f90fbc1af5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-10A TCGA-AO-A0JG-10A-01D-A087-01 62c9150e-33f0-48c7-a93d-f50d6e9acce6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-10A TCGA-AO-A0JG-10A-01D-A087-01 62c9150e-33f0-48c7-a93d-f50d6e9acce6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A03_698128.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-AO-A0JG TCGA-AO-A0JG-10A TCGA-AO-A0JG-10A-01D-A087-01 62c9150e-33f0-48c7-a93d-f50d6e9acce6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A03_698128.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-10A TCGA-AO-A0JG-10A-01D-A087-01 62c9150e-33f0-48c7-a93d-f50d6e9acce6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A03_698128.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-10A TCGA-AO-A0JG-10A-01D-A087-01 62c9150e-33f0-48c7-a93d-f50d6e9acce6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A03_698128.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-10A TCGA-AO-A0JG-10A-01D-A087-01 62c9150e-33f0-48c7-a93d-f50d6e9acce6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A03_698128.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-10A TCGA-AO-A0JG-10A-01D-A087-01 62c9150e-33f0-48c7-a93d-f50d6e9acce6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A03_698128.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-10A TCGA-AO-A0JG-10A-01D-A087-01 62c9150e-33f0-48c7-a93d-f50d6e9acce6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A03_698128.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-10A TCGA-AO-A0JG-10A-01D-A087-01 62c9150e-33f0-48c7-a93d-f50d6e9acce6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A03_698128.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-10A TCGA-AO-A0JG-10A-01D-A099-09 20816396-b37f-4bde-b8cb-418a3a6731f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-10A TCGA-AO-A0JG-10A-01D-A099-09 20816396-b37f-4bde-b8cb-418a3a6731f6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-10A TCGA-AO-A0JG-10A-01D-A099-09 20816396-b37f-4bde-b8cb-418a3a6731f6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-10A TCGA-AO-A0JG-10A-01W-A097-09 001a9851-7ebd-4011-afad-145cc1673e22 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AO-A0JG TCGA-AO-A0JG-10A TCGA-AO-A0JG-10A-01X-A098-09 50b9859e-3777-4eb4-9616-d907e655ee5a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21D-A058-05 665aa7e0-4e92-4601-8ef0-048d09e25e46 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21D-A059-01 fdc086da-5ae1-4600-9039-4ea5c1fb7655 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21D-A059-01 fdc086da-5ae1-4600-9039-4ea5c1fb7655 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C04_697074.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21D-A059-01 fdc086da-5ae1-4600-9039-4ea5c1fb7655 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C04_697074.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21D-A059-01 fdc086da-5ae1-4600-9039-4ea5c1fb7655 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C04_697074.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21D-A059-01 fdc086da-5ae1-4600-9039-4ea5c1fb7655 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C04_697074.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21D-A059-01 fdc086da-5ae1-4600-9039-4ea5c1fb7655 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C04_697074.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21D-A059-01 fdc086da-5ae1-4600-9039-4ea5c1fb7655 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C04_697074.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21D-A059-01 fdc086da-5ae1-4600-9039-4ea5c1fb7655 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C04_697074.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21D-A059-01 fdc086da-5ae1-4600-9039-4ea5c1fb7655 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C04_697074.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21D-A060-02 8b9b4371-d3ba-4129-8aae-3e71d2ffe2f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21D-A100-09 78f59a16-b106-495b-8e9b-759e5676eb9f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21D-A10P-05 ff2c468d-f148-4d94-ae1e-dc6c1a2a7936 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21D-A10P-05 ff2c468d-f148-4d94-ae1e-dc6c1a2a7936 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486014_R05C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21D-A10P-05 ff2c468d-f148-4d94-ae1e-dc6c1a2a7936 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486014_R05C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21D-A10P-05 ff2c468d-f148-4d94-ae1e-dc6c1a2a7936 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-AO-A0JI-01A-21D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21D-A10P-05 ff2c468d-f148-4d94-ae1e-dc6c1a2a7936 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-AO-A0JI-01A-21D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21R-A056-07 fb0cd718-5300-4447-9740-a63308f65d92 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21R-A056-07 fb0cd718-5300-4447-9740-a63308f65d92 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012264_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21R-A056-07 fb0cd718-5300-4447-9740-a63308f65d92 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012264_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21R-A056-07 fb0cd718-5300-4447-9740-a63308f65d92 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012264_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21R-A056-07 fb0cd718-5300-4447-9740-a63308f65d92 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478167.TCGA-AO-A0JI-01A-21R-A056-07.110318_SN749_0047_BB039EABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21R-A056-07 fb0cd718-5300-4447-9740-a63308f65d92 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478175.TCGA-AO-A0JI-01A-21R-A056-07.110318_SN749_0047_BB039EABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21R-A056-07 fb0cd718-5300-4447-9740-a63308f65d92 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478211.TCGA-AO-A0JI-01A-21R-A056-07.110318_SN749_0047_BB039EABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21R-A057-13 0cf9968d-3921-4d96-b325-83d60b6cb746 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21R-A057-13 0cf9968d-3921-4d96-b325-83d60b6cb746 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0JI-01A-21R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21R-A057-13 0cf9968d-3921-4d96-b325-83d60b6cb746 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0JI-01A-21R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21W-A100-09 861297ec-2c88-4717-ae63-eb8e21fe8c52 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21W-A100-09 861297ec-2c88-4717-ae63-eb8e21fe8c52 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 61 22-JUL-11 04.53.19.115000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21W-A100-09 861297ec-2c88-4717-ae63-eb8e21fe8c52 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-01A TCGA-AO-A0JI-01A-21X-A100-09 69e61112-a504-46c1-a0ff-bcd4ec584e80 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-10A TCGA-AO-A0JI-10A-01D-A059-01 e04eb1e2-2e7a-49e6-aedf-46078c25235f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-10A TCGA-AO-A0JI-10A-01D-A059-01 e04eb1e2-2e7a-49e6-aedf-46078c25235f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A03_697148.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-10A TCGA-AO-A0JI-10A-01D-A059-01 e04eb1e2-2e7a-49e6-aedf-46078c25235f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A03_697148.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-10A TCGA-AO-A0JI-10A-01D-A059-01 e04eb1e2-2e7a-49e6-aedf-46078c25235f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A03_697148.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-10A TCGA-AO-A0JI-10A-01D-A059-01 e04eb1e2-2e7a-49e6-aedf-46078c25235f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A03_697148.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-10A TCGA-AO-A0JI-10A-01D-A059-01 e04eb1e2-2e7a-49e6-aedf-46078c25235f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A03_697148.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-10A TCGA-AO-A0JI-10A-01D-A059-01 e04eb1e2-2e7a-49e6-aedf-46078c25235f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A03_697148.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-10A TCGA-AO-A0JI-10A-01D-A059-01 e04eb1e2-2e7a-49e6-aedf-46078c25235f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A03_697148.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-10A TCGA-AO-A0JI-10A-01D-A059-01 e04eb1e2-2e7a-49e6-aedf-46078c25235f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A03_697148.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-10A TCGA-AO-A0JI-10A-01D-A060-02 e0be5964-a146-47f2-9760-b0f225b5cb7b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-10A TCGA-AO-A0JI-10A-01D-A100-09 08e87450-9062-44f2-bf93-68b2f3777fa8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-10A TCGA-AO-A0JI-10A-01W-A100-09 f1f91ae3-80bd-40ed-b495-d8dd96299105 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-10A TCGA-AO-A0JI-10A-01W-A100-09 f1f91ae3-80bd-40ed-b495-d8dd96299105 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 61 22-JUL-11 04.53.19.115000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-10A TCGA-AO-A0JI-10A-01W-A100-09 f1f91ae3-80bd-40ed-b495-d8dd96299105 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JI TCGA-AO-A0JI-10A TCGA-AO-A0JI-10A-01X-A100-09 283d5e2b-8e45-4e52-9803-3d2805a947a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM Notification Prior malignancy No Note Specified TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11D-A058-05 86b29588-b0d8-4dac-b91a-d30d6f69162f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11D-A059-01 8429bc9e-7bf1-44b1-8e7f-a3ee2d8c2b43 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11D-A059-01 8429bc9e-7bf1-44b1-8e7f-a3ee2d8c2b43 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B03_697186.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11D-A059-01 8429bc9e-7bf1-44b1-8e7f-a3ee2d8c2b43 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B03_697186.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11D-A059-01 8429bc9e-7bf1-44b1-8e7f-a3ee2d8c2b43 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B03_697186.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11D-A059-01 8429bc9e-7bf1-44b1-8e7f-a3ee2d8c2b43 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B03_697186.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11D-A059-01 8429bc9e-7bf1-44b1-8e7f-a3ee2d8c2b43 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B03_697186.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11D-A059-01 8429bc9e-7bf1-44b1-8e7f-a3ee2d8c2b43 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B03_697186.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11D-A059-01 8429bc9e-7bf1-44b1-8e7f-a3ee2d8c2b43 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B03_697186.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11D-A059-01 8429bc9e-7bf1-44b1-8e7f-a3ee2d8c2b43 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B03_697186.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11D-A060-02 ed24b69d-599e-42ed-bbe3-5c4f59fabed4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11D-A074-08 fb55f2e1-ef0e-44de-8226-288d16af09ad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11D-A075-09 3f22afdd-e974-4c37-9bfa-d624b1e753f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11D-A10P-05 4a6c7f38-95a7-4f88-9a8e-de0f02db71bd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11D-A10P-05 4a6c7f38-95a7-4f88-9a8e-de0f02db71bd DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486014_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11D-A10P-05 4a6c7f38-95a7-4f88-9a8e-de0f02db71bd DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486014_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11D-A10P-05 4a6c7f38-95a7-4f88-9a8e-de0f02db71bd DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-AO-A0JJ-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11D-A10P-05 4a6c7f38-95a7-4f88-9a8e-de0f02db71bd DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-AO-A0JJ-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11R-A056-07 b5eeba4f-8e46-4084-9054-961ea524cf72 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11R-A056-07 b5eeba4f-8e46-4084-9054-961ea524cf72 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012204_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11R-A056-07 b5eeba4f-8e46-4084-9054-961ea524cf72 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012204_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11R-A056-07 b5eeba4f-8e46-4084-9054-961ea524cf72 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012204_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11R-A056-07 b5eeba4f-8e46-4084-9054-961ea524cf72 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593274.TCGA-AO-A0JJ-01A-11R-A056-07.110318_SN744_0079_AB042LABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11R-A056-07 b5eeba4f-8e46-4084-9054-961ea524cf72 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593281.TCGA-AO-A0JJ-01A-11R-A056-07.110318_SN744_0079_AB042LABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11R-A056-07 b5eeba4f-8e46-4084-9054-961ea524cf72 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593292.TCGA-AO-A0JJ-01A-11R-A056-07.110318_SN744_0079_AB042LABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11R-A057-13 4fdeef5f-bc5d-4577-a47f-55cd719f70aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11R-A057-13 4fdeef5f-bc5d-4577-a47f-55cd719f70aa miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0JJ-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11R-A057-13 4fdeef5f-bc5d-4577-a47f-55cd719f70aa miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0JJ-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11W-A070-08 5556b10c-26bb-4af0-89ce-e118d770d44b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11W-A071-09 812191d1-6711-4efd-8932-c76159b60ffb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11W-A071-09 812191d1-6711-4efd-8932-c76159b60ffb Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11X-A072-08 40ad62d7-3f7b-4a88-b314-38cff58b9d7a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-01A TCGA-AO-A0JJ-01A-11X-A073-09 54b86f46-4a5b-425e-ad95-3e9036ab9b13 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-10A TCGA-AO-A0JJ-10A-01D-A059-01 773b20da-4fba-40e6-a607-7ae03a871323 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-10A TCGA-AO-A0JJ-10A-01D-A059-01 773b20da-4fba-40e6-a607-7ae03a871323 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G11_697176.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-AO-A0JJ TCGA-AO-A0JJ-10A TCGA-AO-A0JJ-10A-01D-A059-01 773b20da-4fba-40e6-a607-7ae03a871323 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G11_697176.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-10A TCGA-AO-A0JJ-10A-01D-A059-01 773b20da-4fba-40e6-a607-7ae03a871323 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G11_697176.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-10A TCGA-AO-A0JJ-10A-01D-A059-01 773b20da-4fba-40e6-a607-7ae03a871323 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G11_697176.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-10A TCGA-AO-A0JJ-10A-01D-A059-01 773b20da-4fba-40e6-a607-7ae03a871323 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G11_697176.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-10A TCGA-AO-A0JJ-10A-01D-A059-01 773b20da-4fba-40e6-a607-7ae03a871323 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G11_697176.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-10A TCGA-AO-A0JJ-10A-01D-A059-01 773b20da-4fba-40e6-a607-7ae03a871323 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G11_697176.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-10A TCGA-AO-A0JJ-10A-01D-A059-01 773b20da-4fba-40e6-a607-7ae03a871323 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G11_697176.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-10A TCGA-AO-A0JJ-10A-01D-A060-02 8a9f1058-6930-4942-879d-6633db1848e0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-10A TCGA-AO-A0JJ-10A-01D-A074-08 163b4ccb-e4b5-47ea-b0dc-c816e7a6e1f2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-10A TCGA-AO-A0JJ-10A-01D-A075-09 055db506-a4c5-4e6e-9c23-9aa46bf0755f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-10A TCGA-AO-A0JJ-10A-01W-A070-08 d6f6c4d6-f364-466f-adc5-c0e8767ee25d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-10A TCGA-AO-A0JJ-10A-01W-A071-09 a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-10A TCGA-AO-A0JJ-10A-01W-A071-09 a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-10A TCGA-AO-A0JJ-10A-01X-A072-08 b996b9eb-a6f3-49af-8b33-f22a63986dac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JJ TCGA-AO-A0JJ-10A TCGA-AO-A0JJ-10A-01X-A073-09 0a873050-cfd0-48c8-b2c1-fd8225c6e4e2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11D-A058-05 c75bc05a-3bb8-4e72-831a-e243d33d731a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11D-A059-01 cb51709b-1103-435b-b9da-eb362eae58fe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11D-A059-01 cb51709b-1103-435b-b9da-eb362eae58fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A04_697150.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11D-A059-01 cb51709b-1103-435b-b9da-eb362eae58fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A04_697150.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11D-A059-01 cb51709b-1103-435b-b9da-eb362eae58fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A04_697150.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11D-A059-01 cb51709b-1103-435b-b9da-eb362eae58fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A04_697150.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11D-A059-01 cb51709b-1103-435b-b9da-eb362eae58fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A04_697150.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11D-A059-01 cb51709b-1103-435b-b9da-eb362eae58fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A04_697150.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11D-A059-01 cb51709b-1103-435b-b9da-eb362eae58fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A04_697150.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11D-A059-01 cb51709b-1103-435b-b9da-eb362eae58fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A04_697150.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11D-A060-02 a34c3f47-ad37-4777-a733-07ae8f4b4bff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11D-A074-08 165bc759-5ef1-4499-85fe-311748f0bb75 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11D-A075-09 b0fa531d-ffa9-495d-8546-5c9b9238f121 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11D-A10P-05 d5312e85-510e-4899-8179-b7349044a508 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11D-A10P-05 d5312e85-510e-4899-8179-b7349044a508 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486014_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11D-A10P-05 d5312e85-510e-4899-8179-b7349044a508 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486014_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11D-A10P-05 d5312e85-510e-4899-8179-b7349044a508 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-AO-A0JL-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11D-A10P-05 d5312e85-510e-4899-8179-b7349044a508 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-AO-A0JL-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11R-A056-07 7953e62d-4871-4928-a2ba-a38c740134e1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11R-A056-07 7953e62d-4871-4928-a2ba-a38c740134e1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012210_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11R-A056-07 7953e62d-4871-4928-a2ba-a38c740134e1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012210_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11R-A056-07 7953e62d-4871-4928-a2ba-a38c740134e1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012210_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11R-A056-07 7953e62d-4871-4928-a2ba-a38c740134e1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593255.TCGA-AO-A0JL-01A-11R-A056-07.110318_SN744_0079_AB042LABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11R-A056-07 7953e62d-4871-4928-a2ba-a38c740134e1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593258.TCGA-AO-A0JL-01A-11R-A056-07.110318_SN744_0079_AB042LABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11R-A056-07 7953e62d-4871-4928-a2ba-a38c740134e1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593287.TCGA-AO-A0JL-01A-11R-A056-07.110318_SN744_0079_AB042LABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11R-A057-13 909d72db-9f14-428e-aae3-ca29a35187b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11R-A057-13 909d72db-9f14-428e-aae3-ca29a35187b0 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0JL-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11R-A057-13 909d72db-9f14-428e-aae3-ca29a35187b0 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0JL-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11W-A070-08 4c4a0ab8-0183-48d4-ac3b-da8639dfcf77 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11W-A071-09 56a22648-be92-402c-a225-bcaa44a7e612 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11W-A071-09 56a22648-be92-402c-a225-bcaa44a7e612 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11X-A072-08 7b6b62e2-2c1e-4103-a9b5-6b9726f32a1c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-01A TCGA-AO-A0JL-01A-11X-A073-09 0d2d5685-fbcf-444c-862d-fd1ee7f97849 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-10A TCGA-AO-A0JL-10A-01D-A059-01 56c3b736-47ab-4c5a-8ae1-68198fb1e5c5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-10A TCGA-AO-A0JL-10A-01D-A059-01 56c3b736-47ab-4c5a-8ae1-68198fb1e5c5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B06_697196.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-AO-A0JL TCGA-AO-A0JL-10A TCGA-AO-A0JL-10A-01D-A059-01 56c3b736-47ab-4c5a-8ae1-68198fb1e5c5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B06_697196.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-10A TCGA-AO-A0JL-10A-01D-A059-01 56c3b736-47ab-4c5a-8ae1-68198fb1e5c5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B06_697196.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-10A TCGA-AO-A0JL-10A-01D-A059-01 56c3b736-47ab-4c5a-8ae1-68198fb1e5c5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B06_697196.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-10A TCGA-AO-A0JL-10A-01D-A059-01 56c3b736-47ab-4c5a-8ae1-68198fb1e5c5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B06_697196.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-10A TCGA-AO-A0JL-10A-01D-A059-01 56c3b736-47ab-4c5a-8ae1-68198fb1e5c5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B06_697196.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-10A TCGA-AO-A0JL-10A-01D-A059-01 56c3b736-47ab-4c5a-8ae1-68198fb1e5c5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B06_697196.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-10A TCGA-AO-A0JL-10A-01D-A059-01 56c3b736-47ab-4c5a-8ae1-68198fb1e5c5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B06_697196.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-10A TCGA-AO-A0JL-10A-01D-A060-02 5159552d-2bc4-4c78-a5fd-3b34084c6a4e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-10A TCGA-AO-A0JL-10A-01D-A074-08 af6923a5-a236-48d8-9b08-f63aa16beb68 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-10A TCGA-AO-A0JL-10A-01D-A075-09 9c7b21b5-15a8-4e5e-b30e-3dbf0c51eafa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-10A TCGA-AO-A0JL-10A-01W-A070-08 76085a5e-73ee-4644-af39-3b9dbdd24440 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-10A TCGA-AO-A0JL-10A-01W-A071-09 efe1ab84-6be7-4543-b692-f12470b5ddea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-10A TCGA-AO-A0JL-10A-01W-A071-09 efe1ab84-6be7-4543-b692-f12470b5ddea Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-10A TCGA-AO-A0JL-10A-01X-A072-08 be45ac98-e121-48eb-9569-78621455ce31 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JL TCGA-AO-A0JL-10A TCGA-AO-A0JL-10A-01X-A073-09 d7ebd2df-8bb5-4785-8914-fb7dd2624452 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21D-A058-05 f15f083e-4ba8-4004-abcf-57372a5ca29b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21D-A059-01 34401e18-8273-4fbb-bbf6-4830e1d7cc96 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21D-A059-01 34401e18-8273-4fbb-bbf6-4830e1d7cc96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B07_697190.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21D-A059-01 34401e18-8273-4fbb-bbf6-4830e1d7cc96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B07_697190.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21D-A059-01 34401e18-8273-4fbb-bbf6-4830e1d7cc96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B07_697190.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21D-A059-01 34401e18-8273-4fbb-bbf6-4830e1d7cc96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B07_697190.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21D-A059-01 34401e18-8273-4fbb-bbf6-4830e1d7cc96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B07_697190.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21D-A059-01 34401e18-8273-4fbb-bbf6-4830e1d7cc96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B07_697190.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21D-A059-01 34401e18-8273-4fbb-bbf6-4830e1d7cc96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B07_697190.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21D-A059-01 34401e18-8273-4fbb-bbf6-4830e1d7cc96 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B07_697190.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21D-A060-02 b4ff2c04-4e66-48c6-9160-74118fedeb5b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21D-A074-08 8472beff-29b7-4ce0-ac57-8dca86f9eabe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21D-A075-09 fbdf5fb8-3ae2-4b0f-8b5e-ecead75307c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21D-A10P-05 c4756a84-80a3-4d7c-81b3-0c02087c6757 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21D-A10P-05 c4756a84-80a3-4d7c-81b3-0c02087c6757 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486019_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21D-A10P-05 c4756a84-80a3-4d7c-81b3-0c02087c6757 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486019_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21D-A10P-05 c4756a84-80a3-4d7c-81b3-0c02087c6757 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-AO-A0JM-01A-21D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21D-A10P-05 c4756a84-80a3-4d7c-81b3-0c02087c6757 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-AO-A0JM-01A-21D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21D-A19H-09 aacaba97-ecde-440b-aae0-0e9c608c4b24 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21R-A056-07 7b53ba9f-506e-4af7-9752-ae50e4445880 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21R-A056-07 7b53ba9f-506e-4af7-9752-ae50e4445880 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012483_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21R-A056-07 7b53ba9f-506e-4af7-9752-ae50e4445880 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012483_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21R-A056-07 7b53ba9f-506e-4af7-9752-ae50e4445880 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012483_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21R-A056-07 7b53ba9f-506e-4af7-9752-ae50e4445880 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593239.TCGA-AO-A0JM-01A-21R-A056-07.110318_SN744_0079_AB042LABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21R-A056-07 7b53ba9f-506e-4af7-9752-ae50e4445880 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593244.TCGA-AO-A0JM-01A-21R-A056-07.110318_SN744_0079_AB042LABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21R-A056-07 7b53ba9f-506e-4af7-9752-ae50e4445880 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593264.TCGA-AO-A0JM-01A-21R-A056-07.110318_SN744_0079_AB042LABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21R-A057-13 865f8629-be78-49a3-b76e-43f79c8eb025 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21R-A057-13 865f8629-be78-49a3-b76e-43f79c8eb025 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0JM-01A-21R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21R-A057-13 865f8629-be78-49a3-b76e-43f79c8eb025 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A0JM-01A-21R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21W-A070-08 26e8866a-0b04-4cec-95bc-0a627803ed20 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21W-A071-09 f070142b-f44e-4264-8919-dde7d02ad835 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21W-A071-09 f070142b-f44e-4264-8919-dde7d02ad835 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21X-A072-08 923586e2-e358-4fa2-8e02-10ee4cdfa20e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-01A TCGA-AO-A0JM-01A-21X-A073-09 44e2f93b-8ce1-49a7-a34c-76a3fe5017c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-10A TCGA-AO-A0JM-10A-01D-A059-01 726afe39-83af-4a0e-be08-67294300b971 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-10A TCGA-AO-A0JM-10A-01D-A059-01 726afe39-83af-4a0e-be08-67294300b971 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F09_697188.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-AO-A0JM TCGA-AO-A0JM-10A TCGA-AO-A0JM-10A-01D-A059-01 726afe39-83af-4a0e-be08-67294300b971 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F09_697188.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-10A TCGA-AO-A0JM-10A-01D-A059-01 726afe39-83af-4a0e-be08-67294300b971 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F09_697188.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-10A TCGA-AO-A0JM-10A-01D-A059-01 726afe39-83af-4a0e-be08-67294300b971 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F09_697188.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-10A TCGA-AO-A0JM-10A-01D-A059-01 726afe39-83af-4a0e-be08-67294300b971 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F09_697188.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-10A TCGA-AO-A0JM-10A-01D-A059-01 726afe39-83af-4a0e-be08-67294300b971 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F09_697188.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-10A TCGA-AO-A0JM-10A-01D-A059-01 726afe39-83af-4a0e-be08-67294300b971 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F09_697188.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-10A TCGA-AO-A0JM-10A-01D-A059-01 726afe39-83af-4a0e-be08-67294300b971 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F09_697188.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-10A TCGA-AO-A0JM-10A-01D-A060-02 e636719b-5e1c-473b-8210-bab729a9a8c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-10A TCGA-AO-A0JM-10A-01D-A074-08 b300215f-9d5d-4aa2-9683-5a8aad889cc4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-10A TCGA-AO-A0JM-10A-01D-A075-09 9002d3ee-c1cf-46ce-a35c-478b30b5232c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-10A TCGA-AO-A0JM-10A-01D-A19H-09 440cc94e-413d-464c-9160-91d4b0f81d18 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-10A TCGA-AO-A0JM-10A-01W-A070-08 cc579e2e-e2f1-4040-b3b1-557caa2e9a98 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-10A TCGA-AO-A0JM-10A-01W-A071-09 e8905dd3-81d6-424c-8329-33aba5498151 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-10A TCGA-AO-A0JM-10A-01W-A071-09 e8905dd3-81d6-424c-8329-33aba5498151 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-10A TCGA-AO-A0JM-10A-01X-A072-08 2f288307-60da-47ed-bf75-f0b5e1c7fb79 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A0JM TCGA-AO-A0JM-10A TCGA-AO-A0JM-10A-01X-A073-09 7fcfdcdc-4954-4ff0-ba8a-8cd95b110063 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-AO-A0JM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11D-A10K-02 783db361-df4a-4112-9ab5-60aca26881ca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A124.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11D-A10L-01 cea1bfb5-fe63-4515-8f2b-66696afa23b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A124.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11D-A10L-01 cea1bfb5-fe63-4515-8f2b-66696afa23b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F11_734726.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11D-A10L-01 cea1bfb5-fe63-4515-8f2b-66696afa23b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F11_734726.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11D-A10L-01 cea1bfb5-fe63-4515-8f2b-66696afa23b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F11_734726.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11D-A10L-01 cea1bfb5-fe63-4515-8f2b-66696afa23b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F11_734726.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11D-A10L-01 cea1bfb5-fe63-4515-8f2b-66696afa23b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F11_734726.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11D-A10L-01 cea1bfb5-fe63-4515-8f2b-66696afa23b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F11_734726.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11D-A10L-01 cea1bfb5-fe63-4515-8f2b-66696afa23b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F11_734726.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11D-A10L-01 cea1bfb5-fe63-4515-8f2b-66696afa23b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F11_734726.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11D-A10M-09 987528ac-437a-4eb8-a335-4f2076d5c006 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A124.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11D-A10M-09 987528ac-437a-4eb8-a335-4f2076d5c006 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11D-A10N-05 e6d06e89-8218-475f-9683-25ab925aa2be Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A124.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11D-A10N-05 e6d06e89-8218-475f-9683-25ab925aa2be DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486017_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11D-A10N-05 e6d06e89-8218-475f-9683-25ab925aa2be DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486017_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11D-A10N-05 e6d06e89-8218-475f-9683-25ab925aa2be DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-AO-A124-01A-11D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11D-A10N-05 e6d06e89-8218-475f-9683-25ab925aa2be DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-AO-A124-01A-11D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11R-A10I-13 25c449b9-712a-447e-b69e-2de825e5ecf8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A124.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11R-A10I-13 25c449b9-712a-447e-b69e-2de825e5ecf8 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A124-01A-11R-A10I-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11R-A10I-13 25c449b9-712a-447e-b69e-2de825e5ecf8 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A124-01A-11R-A10I-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11R-A10J-07 5cd42d4a-5971-4a01-8c10-99321105a864 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A124.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11R-A10J-07 5cd42d4a-5971-4a01-8c10-99321105a864 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012728_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11R-A10J-07 5cd42d4a-5971-4a01-8c10-99321105a864 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012728_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11R-A10J-07 5cd42d4a-5971-4a01-8c10-99321105a864 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012728_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11R-A10J-07 5cd42d4a-5971-4a01-8c10-99321105a864 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_440691.TCGA-AO-A124-01A-11R-A10J-07.110511_UNC11-SN627_0084_AC02M9ABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11R-A10J-07 5cd42d4a-5971-4a01-8c10-99321105a864 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_440736.TCGA-AO-A124-01A-11R-A10J-07.110511_UNC11-SN627_0084_AC02M9ABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11R-A10J-07 5cd42d4a-5971-4a01-8c10-99321105a864 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_440985.TCGA-AO-A124-01A-11R-A10J-07.110511_UNC11-SN627_0084_AC02M9ABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A124 TCGA-AO-A124-01A TCGA-AO-A124-01A-11W-A124-09 32ea34aa-9c4b-4bea-b9a0-d2e54e777e34 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A124.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A124 TCGA-AO-A124-10A TCGA-AO-A124-10A-01D-A10K-02 4eb37500-81ec-4d97-8c9c-3e375aafee06 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A124.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A124 TCGA-AO-A124-10A TCGA-AO-A124-10A-01D-A10L-01 2615ad42-feb6-48e4-a63c-968c85ecc4b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A124.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A124 TCGA-AO-A124-10A TCGA-AO-A124-10A-01D-A10L-01 2615ad42-feb6-48e4-a63c-968c85ecc4b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E10_734642.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AO-A124 TCGA-AO-A124-10A TCGA-AO-A124-10A-01D-A10L-01 2615ad42-feb6-48e4-a63c-968c85ecc4b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E10_734642.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A124 TCGA-AO-A124-10A TCGA-AO-A124-10A-01D-A10L-01 2615ad42-feb6-48e4-a63c-968c85ecc4b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E10_734642.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A124 TCGA-AO-A124-10A TCGA-AO-A124-10A-01D-A10L-01 2615ad42-feb6-48e4-a63c-968c85ecc4b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E10_734642.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A124 TCGA-AO-A124-10A TCGA-AO-A124-10A-01D-A10L-01 2615ad42-feb6-48e4-a63c-968c85ecc4b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E10_734642.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A124 TCGA-AO-A124-10A TCGA-AO-A124-10A-01D-A10L-01 2615ad42-feb6-48e4-a63c-968c85ecc4b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E10_734642.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A124 TCGA-AO-A124-10A TCGA-AO-A124-10A-01D-A10L-01 2615ad42-feb6-48e4-a63c-968c85ecc4b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E10_734642.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A124 TCGA-AO-A124-10A TCGA-AO-A124-10A-01D-A10L-01 2615ad42-feb6-48e4-a63c-968c85ecc4b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E10_734642.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AO-A124 TCGA-AO-A124-10A TCGA-AO-A124-10A-01D-A10M-09 0c4d979c-75f8-49bd-8e65-f980cbeae267 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A124.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A124 TCGA-AO-A124-10A TCGA-AO-A124-10A-01D-A10M-09 0c4d979c-75f8-49bd-8e65-f980cbeae267 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A124 TCGA-AO-A124-10A TCGA-AO-A124-10A-01W-A124-09 dd095c59-0536-49ed-93f8-a5e0ce423796 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A124.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11D-A10K-02 47f86b86-281d-46af-9c7a-a4378d6874a4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A125.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11D-A10L-01 dbda4063-8216-488e-b84f-65847e980fe5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A125.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11D-A10L-01 dbda4063-8216-488e-b84f-65847e980fe5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H10_734678.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11D-A10L-01 dbda4063-8216-488e-b84f-65847e980fe5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H10_734678.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11D-A10L-01 dbda4063-8216-488e-b84f-65847e980fe5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H10_734678.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11D-A10L-01 dbda4063-8216-488e-b84f-65847e980fe5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H10_734678.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11D-A10L-01 dbda4063-8216-488e-b84f-65847e980fe5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H10_734678.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11D-A10L-01 dbda4063-8216-488e-b84f-65847e980fe5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H10_734678.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11D-A10L-01 dbda4063-8216-488e-b84f-65847e980fe5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H10_734678.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11D-A10L-01 dbda4063-8216-488e-b84f-65847e980fe5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H10_734678.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11D-A10M-09 17669c6d-2eeb-4d56-ac72-f06bfafb7e42 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A125.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11D-A10M-09 17669c6d-2eeb-4d56-ac72-f06bfafb7e42 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11D-A10N-05 d37f8dd7-b184-4894-a2d3-cfe0b7cf1abc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A125.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11D-A10N-05 d37f8dd7-b184-4894-a2d3-cfe0b7cf1abc DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486013_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11D-A10N-05 d37f8dd7-b184-4894-a2d3-cfe0b7cf1abc DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486013_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11D-A10N-05 d37f8dd7-b184-4894-a2d3-cfe0b7cf1abc DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-AO-A125-01A-11D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11D-A10N-05 d37f8dd7-b184-4894-a2d3-cfe0b7cf1abc DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-AO-A125-01A-11D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11R-A10I-13 8dfb6ce3-c56b-420d-9a13-bcf45597db62 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A125.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11R-A10I-13 8dfb6ce3-c56b-420d-9a13-bcf45597db62 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A125-01A-11R-A10I-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11R-A10I-13 8dfb6ce3-c56b-420d-9a13-bcf45597db62 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A125-01A-11R-A10I-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11R-A10J-07 6c8cb6ae-99bb-4878-b6f5-9da28be98588 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A125.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11R-A10J-07 6c8cb6ae-99bb-4878-b6f5-9da28be98588 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012707_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11R-A10J-07 6c8cb6ae-99bb-4878-b6f5-9da28be98588 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012707_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11R-A10J-07 6c8cb6ae-99bb-4878-b6f5-9da28be98588 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012707_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11R-A10J-07 6c8cb6ae-99bb-4878-b6f5-9da28be98588 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439662.TCGA-AO-A125-01A-11R-A10J-07.110511_UNC11-SN627_0084_AC02M9ABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11R-A10J-07 6c8cb6ae-99bb-4878-b6f5-9da28be98588 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439699.TCGA-AO-A125-01A-11R-A10J-07.110511_UNC11-SN627_0084_AC02M9ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11R-A10J-07 6c8cb6ae-99bb-4878-b6f5-9da28be98588 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439726.TCGA-AO-A125-01A-11R-A10J-07.110511_UNC11-SN627_0084_AC02M9ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A125 TCGA-AO-A125-01A TCGA-AO-A125-01A-11W-A124-09 612e01d7-36ef-41f1-a18f-c607ef90c57e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A125.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A125 TCGA-AO-A125-10A TCGA-AO-A125-10A-01D-A10K-02 59f7d012-f4e4-4ec7-9b4d-e5bd00bbe4db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A125.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A125 TCGA-AO-A125-10A TCGA-AO-A125-10A-01D-A10L-01 264c8b42-e178-44b7-856d-ba3ebf0e2879 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A125.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A125 TCGA-AO-A125-10A TCGA-AO-A125-10A-01D-A10L-01 264c8b42-e178-44b7-856d-ba3ebf0e2879 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F01_734778.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AO-A125 TCGA-AO-A125-10A TCGA-AO-A125-10A-01D-A10L-01 264c8b42-e178-44b7-856d-ba3ebf0e2879 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F01_734778.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A125 TCGA-AO-A125-10A TCGA-AO-A125-10A-01D-A10L-01 264c8b42-e178-44b7-856d-ba3ebf0e2879 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F01_734778.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A125 TCGA-AO-A125-10A TCGA-AO-A125-10A-01D-A10L-01 264c8b42-e178-44b7-856d-ba3ebf0e2879 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F01_734778.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A125 TCGA-AO-A125-10A TCGA-AO-A125-10A-01D-A10L-01 264c8b42-e178-44b7-856d-ba3ebf0e2879 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F01_734778.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A125 TCGA-AO-A125-10A TCGA-AO-A125-10A-01D-A10L-01 264c8b42-e178-44b7-856d-ba3ebf0e2879 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F01_734778.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A125 TCGA-AO-A125-10A TCGA-AO-A125-10A-01D-A10L-01 264c8b42-e178-44b7-856d-ba3ebf0e2879 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F01_734778.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A125 TCGA-AO-A125-10A TCGA-AO-A125-10A-01D-A10L-01 264c8b42-e178-44b7-856d-ba3ebf0e2879 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F01_734778.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AO-A125 TCGA-AO-A125-10A TCGA-AO-A125-10A-01D-A10M-09 423d3a68-5276-4fa6-bc76-298f23758452 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A125.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A125 TCGA-AO-A125-10A TCGA-AO-A125-10A-01D-A10M-09 423d3a68-5276-4fa6-bc76-298f23758452 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A125 TCGA-AO-A125-10A TCGA-AO-A125-10A-01W-A124-09 b82a499d-ea12-4527-9296-6059e72baa94 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A125.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11D-A10K-02 23b0311d-939c-4dff-88a3-2051a141ea85 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A126.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11D-A10L-01 b232d272-6cc0-43ec-92e6-f854213a4b19 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A126.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11D-A10L-01 b232d272-6cc0-43ec-92e6-f854213a4b19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G04_734704.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11D-A10L-01 b232d272-6cc0-43ec-92e6-f854213a4b19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G04_734704.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11D-A10L-01 b232d272-6cc0-43ec-92e6-f854213a4b19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G04_734704.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11D-A10L-01 b232d272-6cc0-43ec-92e6-f854213a4b19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G04_734704.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11D-A10L-01 b232d272-6cc0-43ec-92e6-f854213a4b19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G04_734704.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11D-A10L-01 b232d272-6cc0-43ec-92e6-f854213a4b19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G04_734704.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11D-A10L-01 b232d272-6cc0-43ec-92e6-f854213a4b19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G04_734704.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11D-A10L-01 b232d272-6cc0-43ec-92e6-f854213a4b19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G04_734704.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11D-A10M-09 85b39644-6f19-40dc-94c1-0afc93ee4981 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A126.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11D-A10M-09 85b39644-6f19-40dc-94c1-0afc93ee4981 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11D-A10N-05 833237ce-6d7c-45e3-bda9-65b1d19947d1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A126.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11D-A10N-05 833237ce-6d7c-45e3-bda9-65b1d19947d1 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486012_R05C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11D-A10N-05 833237ce-6d7c-45e3-bda9-65b1d19947d1 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486012_R05C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11D-A10N-05 833237ce-6d7c-45e3-bda9-65b1d19947d1 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-AO-A126-01A-11D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11D-A10N-05 833237ce-6d7c-45e3-bda9-65b1d19947d1 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-AO-A126-01A-11D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11R-A10I-13 9b579f73-20da-4ec3-95fb-b5af07c33561 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A126.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11R-A10I-13 9b579f73-20da-4ec3-95fb-b5af07c33561 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A126-01A-11R-A10I-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11R-A10I-13 9b579f73-20da-4ec3-95fb-b5af07c33561 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A126-01A-11R-A10I-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11R-A10J-07 690cf196-9b2c-4886-a0e2-ce3a49cb4389 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A126.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11R-A10J-07 690cf196-9b2c-4886-a0e2-ce3a49cb4389 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012710_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11R-A10J-07 690cf196-9b2c-4886-a0e2-ce3a49cb4389 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012710_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11R-A10J-07 690cf196-9b2c-4886-a0e2-ce3a49cb4389 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012710_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11R-A10J-07 690cf196-9b2c-4886-a0e2-ce3a49cb4389 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439719.TCGA-AO-A126-01A-11R-A10J-07.110511_UNC11-SN627_0084_AC02M9ABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11R-A10J-07 690cf196-9b2c-4886-a0e2-ce3a49cb4389 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439721.TCGA-AO-A126-01A-11R-A10J-07.110511_UNC11-SN627_0084_AC02M9ABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11R-A10J-07 690cf196-9b2c-4886-a0e2-ce3a49cb4389 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439764.TCGA-AO-A126-01A-11R-A10J-07.110511_UNC11-SN627_0084_AC02M9ABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A126 TCGA-AO-A126-01A TCGA-AO-A126-01A-11W-A124-09 be643556-aa06-4038-8aec-1c7043373d12 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A126.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A126 TCGA-AO-A126-10A TCGA-AO-A126-10A-01D-A10K-02 e0016f92-ebc3-42f1-aefa-6d2c5326c11e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A126.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A126 TCGA-AO-A126-10A TCGA-AO-A126-10A-01D-A10L-01 0380700b-e258-4e00-a468-bbdd3dd444a9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A126.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A126 TCGA-AO-A126-10A TCGA-AO-A126-10A-01D-A10L-01 0380700b-e258-4e00-a468-bbdd3dd444a9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H12_734776.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AO-A126 TCGA-AO-A126-10A TCGA-AO-A126-10A-01D-A10L-01 0380700b-e258-4e00-a468-bbdd3dd444a9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H12_734776.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A126 TCGA-AO-A126-10A TCGA-AO-A126-10A-01D-A10L-01 0380700b-e258-4e00-a468-bbdd3dd444a9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H12_734776.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A126 TCGA-AO-A126-10A TCGA-AO-A126-10A-01D-A10L-01 0380700b-e258-4e00-a468-bbdd3dd444a9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H12_734776.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A126 TCGA-AO-A126-10A TCGA-AO-A126-10A-01D-A10L-01 0380700b-e258-4e00-a468-bbdd3dd444a9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H12_734776.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A126 TCGA-AO-A126-10A TCGA-AO-A126-10A-01D-A10L-01 0380700b-e258-4e00-a468-bbdd3dd444a9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H12_734776.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A126 TCGA-AO-A126-10A TCGA-AO-A126-10A-01D-A10L-01 0380700b-e258-4e00-a468-bbdd3dd444a9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H12_734776.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A126 TCGA-AO-A126-10A TCGA-AO-A126-10A-01D-A10L-01 0380700b-e258-4e00-a468-bbdd3dd444a9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H12_734776.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AO-A126 TCGA-AO-A126-10A TCGA-AO-A126-10A-01D-A10M-09 329950fe-6d8e-4e48-85c8-f963868375bb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A126.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A126 TCGA-AO-A126-10A TCGA-AO-A126-10A-01D-A10M-09 329950fe-6d8e-4e48-85c8-f963868375bb Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A126 TCGA-AO-A126-10A TCGA-AO-A126-10A-01W-A124-09 6b5dd442-0ea4-4e26-972c-706367c41581 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A126.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11D-A10K-02 ebd3c7e2-4590-43fc-bea6-1efc889ee807 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A128.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11D-A10L-01 e704bf4e-f9a2-4ae5-a6ae-2cf62564c0ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A128.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11D-A10L-01 e704bf4e-f9a2-4ae5-a6ae-2cf62564c0ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G08_734684.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11D-A10L-01 e704bf4e-f9a2-4ae5-a6ae-2cf62564c0ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G08_734684.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11D-A10L-01 e704bf4e-f9a2-4ae5-a6ae-2cf62564c0ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G08_734684.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11D-A10L-01 e704bf4e-f9a2-4ae5-a6ae-2cf62564c0ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G08_734684.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11D-A10L-01 e704bf4e-f9a2-4ae5-a6ae-2cf62564c0ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G08_734684.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11D-A10L-01 e704bf4e-f9a2-4ae5-a6ae-2cf62564c0ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G08_734684.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11D-A10L-01 e704bf4e-f9a2-4ae5-a6ae-2cf62564c0ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G08_734684.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11D-A10L-01 e704bf4e-f9a2-4ae5-a6ae-2cf62564c0ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G08_734684.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11D-A10M-09 46ae2a1c-e694-4a86-b127-e6fbaa676b69 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A128.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11D-A10N-05 0673680d-58ed-4098-8a7c-233f49209faa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A128.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11D-A10N-05 0673680d-58ed-4098-8a7c-233f49209faa DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486017_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11D-A10N-05 0673680d-58ed-4098-8a7c-233f49209faa DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486017_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11D-A10N-05 0673680d-58ed-4098-8a7c-233f49209faa DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-AO-A128-01A-11D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11D-A10N-05 0673680d-58ed-4098-8a7c-233f49209faa DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-AO-A128-01A-11D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11R-A10I-13 942b2eea-ca36-4777-987f-893ac21ad53b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A128.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11R-A10I-13 942b2eea-ca36-4777-987f-893ac21ad53b miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A128-01A-11R-A10I-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11R-A10I-13 942b2eea-ca36-4777-987f-893ac21ad53b miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A128-01A-11R-A10I-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11R-A10J-07 4a93eaee-d821-4640-a441-255008aaf3b4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A128.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11R-A10J-07 4a93eaee-d821-4640-a441-255008aaf3b4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012729_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11R-A10J-07 4a93eaee-d821-4640-a441-255008aaf3b4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012729_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11R-A10J-07 4a93eaee-d821-4640-a441-255008aaf3b4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012729_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11R-A10J-07 4a93eaee-d821-4640-a441-255008aaf3b4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439933.TCGA-AO-A128-01A-11R-A10J-07.110511_UNC11-SN627_0084_AC02M9ABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11R-A10J-07 4a93eaee-d821-4640-a441-255008aaf3b4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439948.TCGA-AO-A128-01A-11R-A10J-07.110511_UNC11-SN627_0084_AC02M9ABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11R-A10J-07 4a93eaee-d821-4640-a441-255008aaf3b4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_440133.TCGA-AO-A128-01A-11R-A10J-07.110511_UNC11-SN627_0084_AC02M9ABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A128 TCGA-AO-A128-01A TCGA-AO-A128-01A-11W-A124-09 8d97b796-96e2-4505-a2f2-4bbea80cbdaa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A128.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A128 TCGA-AO-A128-10A TCGA-AO-A128-10A-01D-A10K-02 f374f9df-2d12-4145-8eba-c94c820f8c31 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A128.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A128 TCGA-AO-A128-10A TCGA-AO-A128-10A-01D-A10L-01 41f1ff30-b93a-4514-adc2-44243095f3ce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A128.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A128 TCGA-AO-A128-10A TCGA-AO-A128-10A-01D-A10L-01 41f1ff30-b93a-4514-adc2-44243095f3ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G09_734640.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AO-A128 TCGA-AO-A128-10A TCGA-AO-A128-10A-01D-A10L-01 41f1ff30-b93a-4514-adc2-44243095f3ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G09_734640.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A128 TCGA-AO-A128-10A TCGA-AO-A128-10A-01D-A10L-01 41f1ff30-b93a-4514-adc2-44243095f3ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G09_734640.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A128 TCGA-AO-A128-10A TCGA-AO-A128-10A-01D-A10L-01 41f1ff30-b93a-4514-adc2-44243095f3ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G09_734640.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A128 TCGA-AO-A128-10A TCGA-AO-A128-10A-01D-A10L-01 41f1ff30-b93a-4514-adc2-44243095f3ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G09_734640.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A128 TCGA-AO-A128-10A TCGA-AO-A128-10A-01D-A10L-01 41f1ff30-b93a-4514-adc2-44243095f3ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G09_734640.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A128 TCGA-AO-A128-10A TCGA-AO-A128-10A-01D-A10L-01 41f1ff30-b93a-4514-adc2-44243095f3ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G09_734640.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A128 TCGA-AO-A128-10A TCGA-AO-A128-10A-01D-A10L-01 41f1ff30-b93a-4514-adc2-44243095f3ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G09_734640.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AO-A128 TCGA-AO-A128-10A TCGA-AO-A128-10A-01D-A10M-09 cf7bd3e2-fe1d-43bc-a1dd-14197984162e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A128.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A128 TCGA-AO-A128-10A TCGA-AO-A128-10A-01D-A125-01 d962aa49-a0d9-47a0-a1e0-48517e934582 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A128.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A128 TCGA-AO-A128-10A TCGA-AO-A128-10A-01W-A124-09 af4f0ede-dde5-4a82-b57f-8f3fed21d100 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A128.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21D-A10K-02 cedc1826-c2b3-400f-a3c2-5120d5a610c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A129.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21D-A10L-01 4cd8277c-8a70-44e6-b491-cd35c63408db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A129.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21D-A10L-01 4cd8277c-8a70-44e6-b491-cd35c63408db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F03_734746.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21D-A10L-01 4cd8277c-8a70-44e6-b491-cd35c63408db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F03_734746.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21D-A10L-01 4cd8277c-8a70-44e6-b491-cd35c63408db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F03_734746.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21D-A10L-01 4cd8277c-8a70-44e6-b491-cd35c63408db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F03_734746.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21D-A10L-01 4cd8277c-8a70-44e6-b491-cd35c63408db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F03_734746.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21D-A10L-01 4cd8277c-8a70-44e6-b491-cd35c63408db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F03_734746.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21D-A10L-01 4cd8277c-8a70-44e6-b491-cd35c63408db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F03_734746.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21D-A10L-01 4cd8277c-8a70-44e6-b491-cd35c63408db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F03_734746.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21D-A10M-09 cdf43c25-3ba7-4073-a92d-4a97f651f4a8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A129.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21D-A10M-09 cdf43c25-3ba7-4073-a92d-4a97f651f4a8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21D-A10N-05 55c7e324-02d6-413e-9d2f-5152a1a6cd8e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A129.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21D-A10N-05 55c7e324-02d6-413e-9d2f-5152a1a6cd8e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486012_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21D-A10N-05 55c7e324-02d6-413e-9d2f-5152a1a6cd8e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486012_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21D-A10N-05 55c7e324-02d6-413e-9d2f-5152a1a6cd8e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-AO-A129-01A-21D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21D-A10N-05 55c7e324-02d6-413e-9d2f-5152a1a6cd8e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-AO-A129-01A-21D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21D-A125-01 67ecd822-02e7-48c9-a43b-e7d84aa31c17 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A129.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21R-A10I-13 110ff0b8-51a3-40bb-8d27-62d3944bacc4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A129.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21R-A10I-13 110ff0b8-51a3-40bb-8d27-62d3944bacc4 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A129-01A-21R-A10I-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21R-A10I-13 110ff0b8-51a3-40bb-8d27-62d3944bacc4 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A129-01A-21R-A10I-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21R-A10J-07 15b9736e-eafc-465e-9ddd-b1b498e8b701 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A129.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21R-A10J-07 15b9736e-eafc-465e-9ddd-b1b498e8b701 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012732_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21R-A10J-07 15b9736e-eafc-465e-9ddd-b1b498e8b701 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012732_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21R-A10J-07 15b9736e-eafc-465e-9ddd-b1b498e8b701 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012732_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21R-A10J-07 15b9736e-eafc-465e-9ddd-b1b498e8b701 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442707.TCGA-AO-A129-01A-21R-A10J-07.110509_UNC14-SN744_0110_AC02MVABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21R-A10J-07 15b9736e-eafc-465e-9ddd-b1b498e8b701 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442723.TCGA-AO-A129-01A-21R-A10J-07.110509_UNC14-SN744_0110_AC02MVABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21R-A10J-07 15b9736e-eafc-465e-9ddd-b1b498e8b701 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442759.TCGA-AO-A129-01A-21R-A10J-07.110509_UNC14-SN744_0110_AC02MVABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A129 TCGA-AO-A129-01A TCGA-AO-A129-01A-21W-A124-09 9d0fc37c-f4e6-4708-b79f-191998bbfe70 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A129.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A129 TCGA-AO-A129-10A TCGA-AO-A129-10A-01D-A10K-02 aa5b0e46-0b0d-4c30-b1d8-850d81bb94ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A129.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A129 TCGA-AO-A129-10A TCGA-AO-A129-10A-01D-A10L-01 8460429b-625f-4e54-899f-3971bea3e46e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A129.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A129 TCGA-AO-A129-10A TCGA-AO-A129-10A-01D-A10L-01 8460429b-625f-4e54-899f-3971bea3e46e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G12_734766.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AO-A129 TCGA-AO-A129-10A TCGA-AO-A129-10A-01D-A10L-01 8460429b-625f-4e54-899f-3971bea3e46e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G12_734766.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A129 TCGA-AO-A129-10A TCGA-AO-A129-10A-01D-A10L-01 8460429b-625f-4e54-899f-3971bea3e46e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G12_734766.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A129 TCGA-AO-A129-10A TCGA-AO-A129-10A-01D-A10L-01 8460429b-625f-4e54-899f-3971bea3e46e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G12_734766.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A129 TCGA-AO-A129-10A TCGA-AO-A129-10A-01D-A10L-01 8460429b-625f-4e54-899f-3971bea3e46e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G12_734766.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A129 TCGA-AO-A129-10A TCGA-AO-A129-10A-01D-A10L-01 8460429b-625f-4e54-899f-3971bea3e46e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G12_734766.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A129 TCGA-AO-A129-10A TCGA-AO-A129-10A-01D-A10L-01 8460429b-625f-4e54-899f-3971bea3e46e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G12_734766.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A129 TCGA-AO-A129-10A TCGA-AO-A129-10A-01D-A10L-01 8460429b-625f-4e54-899f-3971bea3e46e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G12_734766.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AO-A129 TCGA-AO-A129-10A TCGA-AO-A129-10A-01D-A10M-09 c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A129.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A129 TCGA-AO-A129-10A TCGA-AO-A129-10A-01D-A10M-09 c60ba4ed-706e-4e4b-bfcc-8ec36ff0fbd8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A129 TCGA-AO-A129-10A TCGA-AO-A129-10A-01W-A124-09 6a6a4b2f-fb88-4474-b4c6-cd6799f74808 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A129.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21D-A10X-02 54df7123-c941-42d7-8925-98095a34afd7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21D-A10Y-09 77e7b41a-d4c8-42ee-ae6e-da15ea3634d9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21D-A10Y-09 77e7b41a-d4c8-42ee-ae6e-da15ea3634d9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21D-A111-01 2cbacdf7-951b-4e62-b703-909aaae769ae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21D-A111-01 2cbacdf7-951b-4e62-b703-909aaae769ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F09_735164.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21D-A111-01 2cbacdf7-951b-4e62-b703-909aaae769ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F09_735164.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21D-A111-01 2cbacdf7-951b-4e62-b703-909aaae769ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F09_735164.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21D-A111-01 2cbacdf7-951b-4e62-b703-909aaae769ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F09_735164.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21D-A111-01 2cbacdf7-951b-4e62-b703-909aaae769ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F09_735164.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21D-A111-01 2cbacdf7-951b-4e62-b703-909aaae769ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F09_735164.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21D-A111-01 2cbacdf7-951b-4e62-b703-909aaae769ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F09_735164.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21D-A111-01 2cbacdf7-951b-4e62-b703-909aaae769ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F09_735164.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21D-A112-05 24e5a04f-03dd-4c17-8693-f9cba393bfd1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21D-A112-05 24e5a04f-03dd-4c17-8693-f9cba393bfd1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-AO-A12A-01A-21D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21D-A112-05 24e5a04f-03dd-4c17-8693-f9cba393bfd1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-AO-A12A-01A-21D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21D-A112-05 24e5a04f-03dd-4c17-8693-f9cba393bfd1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-AO-A12A-01A-21D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21R-A114-13 29ef0aff-ae9d-4188-b194-c21f8f18d519 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21R-A114-13 29ef0aff-ae9d-4188-b194-c21f8f18d519 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AO-A12A-01A-21R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21R-A114-13 29ef0aff-ae9d-4188-b194-c21f8f18d519 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AO-A12A-01A-21R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21R-A115-07 3f4c6d17-a971-4ba0-83ad-3addc24f1298 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21R-A115-07 3f4c6d17-a971-4ba0-83ad-3addc24f1298 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012823_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21R-A115-07 3f4c6d17-a971-4ba0-83ad-3addc24f1298 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012823_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21R-A115-07 3f4c6d17-a971-4ba0-83ad-3addc24f1298 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012823_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21R-A115-07 3f4c6d17-a971-4ba0-83ad-3addc24f1298 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_447892.TCGA-AO-A12A-01A-21R-A115-07.110620_UNC11-SN627_0109_AD0CNFABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21R-A115-07 3f4c6d17-a971-4ba0-83ad-3addc24f1298 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_447922.TCGA-AO-A12A-01A-21R-A115-07.110620_UNC11-SN627_0109_AD0CNFABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21R-A115-07 3f4c6d17-a971-4ba0-83ad-3addc24f1298 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_448002.TCGA-AO-A12A-01A-21R-A115-07.110620_UNC11-SN627_0109_AD0CNFABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A12A TCGA-AO-A12A-01A TCGA-AO-A12A-01A-21W-A12T-09 7fb0699d-0594-4cb5-a726-dde4ebc8a70f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12A TCGA-AO-A12A-10A TCGA-AO-A12A-10A-01D-A10Z-02 e9781520-2cf8-4bfd-afe0-8dd9baf5c90d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12A TCGA-AO-A12A-10A TCGA-AO-A12A-10A-01D-A110-09 b6e9d2a3-6c63-406b-b101-c4ee350b90df Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12A TCGA-AO-A12A-10A TCGA-AO-A12A-10A-01D-A110-09 b6e9d2a3-6c63-406b-b101-c4ee350b90df Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A12A TCGA-AO-A12A-10A TCGA-AO-A12A-10A-01D-A113-01 2890b547-6c17-4466-a63e-dc09ed9600ae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12A TCGA-AO-A12A-10A TCGA-AO-A12A-10A-01D-A113-01 2890b547-6c17-4466-a63e-dc09ed9600ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C01_735156.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-AO-A12A TCGA-AO-A12A-10A TCGA-AO-A12A-10A-01D-A113-01 2890b547-6c17-4466-a63e-dc09ed9600ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C01_735156.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12A TCGA-AO-A12A-10A TCGA-AO-A12A-10A-01D-A113-01 2890b547-6c17-4466-a63e-dc09ed9600ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C01_735156.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12A TCGA-AO-A12A-10A TCGA-AO-A12A-10A-01D-A113-01 2890b547-6c17-4466-a63e-dc09ed9600ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C01_735156.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12A TCGA-AO-A12A-10A TCGA-AO-A12A-10A-01D-A113-01 2890b547-6c17-4466-a63e-dc09ed9600ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C01_735156.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12A TCGA-AO-A12A-10A TCGA-AO-A12A-10A-01D-A113-01 2890b547-6c17-4466-a63e-dc09ed9600ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C01_735156.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12A TCGA-AO-A12A-10A TCGA-AO-A12A-10A-01D-A113-01 2890b547-6c17-4466-a63e-dc09ed9600ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C01_735156.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12A TCGA-AO-A12A-10A TCGA-AO-A12A-10A-01D-A113-01 2890b547-6c17-4466-a63e-dc09ed9600ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C01_735156.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-AO-A12A TCGA-AO-A12A-10A TCGA-AO-A12A-10A-01W-A12U-09 fb41931a-ecf7-4789-aa58-a98abe55001d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11D-A10K-02 f6cbb5ba-dddc-4ec6-a266-23c3fa4bbd56 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11D-A10L-01 9c9304d2-57bc-42b3-91ae-e4671165e030 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11D-A10L-01 9c9304d2-57bc-42b3-91ae-e4671165e030 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F05_734658.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11D-A10L-01 9c9304d2-57bc-42b3-91ae-e4671165e030 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F05_734658.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11D-A10L-01 9c9304d2-57bc-42b3-91ae-e4671165e030 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F05_734658.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11D-A10L-01 9c9304d2-57bc-42b3-91ae-e4671165e030 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F05_734658.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11D-A10L-01 9c9304d2-57bc-42b3-91ae-e4671165e030 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F05_734658.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11D-A10L-01 9c9304d2-57bc-42b3-91ae-e4671165e030 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F05_734658.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11D-A10L-01 9c9304d2-57bc-42b3-91ae-e4671165e030 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F05_734658.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11D-A10L-01 9c9304d2-57bc-42b3-91ae-e4671165e030 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F05_734658.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11D-A10M-09 865ebd77-7b7d-4a27-b945-df5ec8d1f86a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11D-A10M-09 865ebd77-7b7d-4a27-b945-df5ec8d1f86a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11D-A10N-05 853981ca-e77b-42fc-84c1-24bfacc5821b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11D-A10N-05 853981ca-e77b-42fc-84c1-24bfacc5821b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486013_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11D-A10N-05 853981ca-e77b-42fc-84c1-24bfacc5821b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486013_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11D-A10N-05 853981ca-e77b-42fc-84c1-24bfacc5821b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-AO-A12B-01A-11D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11D-A10N-05 853981ca-e77b-42fc-84c1-24bfacc5821b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-AO-A12B-01A-11D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11R-A10I-13 19615867-8546-49b2-8708-ca4f2baa275e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11R-A10I-13 19615867-8546-49b2-8708-ca4f2baa275e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AO-A12B-01A-11R-A10I-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 80 31-OCT-11 10.17.59.939000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11R-A10I-13 19615867-8546-49b2-8708-ca4f2baa275e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AO-A12B-01A-11R-A10I-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 80 31-OCT-11 10.17.59.939000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11R-A10J-07 44225bb7-92c6-4a6d-b136-bc51666ba84a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11R-A10J-07 44225bb7-92c6-4a6d-b136-bc51666ba84a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012735_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11R-A10J-07 44225bb7-92c6-4a6d-b136-bc51666ba84a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012735_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11R-A10J-07 44225bb7-92c6-4a6d-b136-bc51666ba84a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012735_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11R-A10J-07 44225bb7-92c6-4a6d-b136-bc51666ba84a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421109.TCGA-AO-A12B-01A-11R-A10J-07.110606_UNC12-SN629_0090_AD0CTGABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11R-A10J-07 44225bb7-92c6-4a6d-b136-bc51666ba84a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421118.TCGA-AO-A12B-01A-11R-A10J-07.110606_UNC12-SN629_0090_AD0CTGABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11R-A10J-07 44225bb7-92c6-4a6d-b136-bc51666ba84a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421165.TCGA-AO-A12B-01A-11R-A10J-07.110606_UNC12-SN629_0090_AD0CTGABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A12B TCGA-AO-A12B-01A TCGA-AO-A12B-01A-11W-A124-09 7d3b107c-9f95-4f21-9703-7ec47def657e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12B TCGA-AO-A12B-10A TCGA-AO-A12B-10A-01D-A10K-02 6db64cfa-0090-4f76-939b-1fb750b85226 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12B TCGA-AO-A12B-10A TCGA-AO-A12B-10A-01D-A10L-01 70af31e6-44e2-4d2c-baab-d9a7ff07670b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12B TCGA-AO-A12B-10A TCGA-AO-A12B-10A-01D-A10L-01 70af31e6-44e2-4d2c-baab-d9a7ff07670b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H03_734648.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AO-A12B TCGA-AO-A12B-10A TCGA-AO-A12B-10A-01D-A10L-01 70af31e6-44e2-4d2c-baab-d9a7ff07670b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H03_734648.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12B TCGA-AO-A12B-10A TCGA-AO-A12B-10A-01D-A10L-01 70af31e6-44e2-4d2c-baab-d9a7ff07670b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H03_734648.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12B TCGA-AO-A12B-10A TCGA-AO-A12B-10A-01D-A10L-01 70af31e6-44e2-4d2c-baab-d9a7ff07670b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H03_734648.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12B TCGA-AO-A12B-10A TCGA-AO-A12B-10A-01D-A10L-01 70af31e6-44e2-4d2c-baab-d9a7ff07670b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H03_734648.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12B TCGA-AO-A12B-10A TCGA-AO-A12B-10A-01D-A10L-01 70af31e6-44e2-4d2c-baab-d9a7ff07670b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H03_734648.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12B TCGA-AO-A12B-10A TCGA-AO-A12B-10A-01D-A10L-01 70af31e6-44e2-4d2c-baab-d9a7ff07670b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H03_734648.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12B TCGA-AO-A12B-10A TCGA-AO-A12B-10A-01D-A10L-01 70af31e6-44e2-4d2c-baab-d9a7ff07670b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H03_734648.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AO-A12B TCGA-AO-A12B-10A TCGA-AO-A12B-10A-01D-A10M-09 ce0e2cbf-a483-4093-b46a-32d1f14ea2f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12B TCGA-AO-A12B-10A TCGA-AO-A12B-10A-01D-A10M-09 ce0e2cbf-a483-4093-b46a-32d1f14ea2f9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A12B TCGA-AO-A12B-10A TCGA-AO-A12B-10A-01W-A124-09 b7b7477e-9176-43a4-9520-5f60380bea60 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12C TCGA-AO-A12C-01A TCGA-AO-A12C-01A-11D-A10K-02 d61dce0a-8ca4-4f8a-a1f8-7de4bb0c56c2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12C TCGA-AO-A12C-01A TCGA-AO-A12C-01A-11D-A10L-01 2e146555-16fd-4c9a-b907-6c440fcd58fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.after_5NN.copynumber.data.txt'. TCGA-AO-A12C TCGA-AO-A12C-01A TCGA-AO-A12C-01A-11D-A10L-01 2e146555-16fd-4c9a-b907-6c440fcd58fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.after_5NN.copynumber.data.txt'. TCGA-AO-A12C TCGA-AO-A12C-01A TCGA-AO-A12C-01A-11D-A10L-01 2e146555-16fd-4c9a-b907-6c440fcd58fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.after_5NN.copynumber.data.txt'. TCGA-AO-A12C TCGA-AO-A12C-01A TCGA-AO-A12C-01A-11D-A10L-01 2e146555-16fd-4c9a-b907-6c440fcd58fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.after_5NN.copynumber.data.txt'. TCGA-AO-A12C TCGA-AO-A12C-01A TCGA-AO-A12C-01A-11D-A10L-01 2e146555-16fd-4c9a-b907-6c440fcd58fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.after_5NN.copynumber.data.txt'. TCGA-AO-A12C TCGA-AO-A12C-01A TCGA-AO-A12C-01A-11D-A10L-01 2e146555-16fd-4c9a-b907-6c440fcd58fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.after_5NN.copynumber.data.txt'. TCGA-AO-A12C TCGA-AO-A12C-01A TCGA-AO-A12C-01A-11D-A10L-01 2e146555-16fd-4c9a-b907-6c440fcd58fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H05_734770.after_5NN.copynumber.data.txt'. TCGA-AO-A12C TCGA-AO-A12C-01A TCGA-AO-A12C-01A-11D-A10M-09 139bb647-6232-4d93-937a-efab9d4421f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12C TCGA-AO-A12C-01A TCGA-AO-A12C-01A-11D-A10N-05 a35380bd-9737-4d32-a0bf-e866d37fe624 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12C TCGA-AO-A12C-01A TCGA-AO-A12C-01A-11D-A10N-05 a35380bd-9737-4d32-a0bf-e866d37fe624 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486017_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AO-A12C TCGA-AO-A12C-01A TCGA-AO-A12C-01A-11D-A10N-05 a35380bd-9737-4d32-a0bf-e866d37fe624 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486017_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AO-A12C TCGA-AO-A12C-01A TCGA-AO-A12C-01A-11D-A10N-05 a35380bd-9737-4d32-a0bf-e866d37fe624 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-AO-A12C-01A-11D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM TCGA-AO-A12C TCGA-AO-A12C-01A TCGA-AO-A12C-01A-11D-A10N-05 a35380bd-9737-4d32-a0bf-e866d37fe624 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-AO-A12C-01A-11D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM TCGA-AO-A12C TCGA-AO-A12C-01A TCGA-AO-A12C-01A-11R-A10I-13 5db70113-6361-4b2f-b8e8-b7b4c23bab2b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12C TCGA-AO-A12C-01A TCGA-AO-A12C-01A-11R-A10I-13 5db70113-6361-4b2f-b8e8-b7b4c23bab2b miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A12C-01A-11R-A10I-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A12C TCGA-AO-A12C-01A TCGA-AO-A12C-01A-11R-A10I-13 5db70113-6361-4b2f-b8e8-b7b4c23bab2b miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A12C-01A-11R-A10I-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A12C TCGA-AO-A12C-01A TCGA-AO-A12C-01A-11R-A10J-07 3b1da7ee-4470-4ab5-b1a7-53ac92b4e4d3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12C TCGA-AO-A12C-01A TCGA-AO-A12C-01A-11R-A10J-07 3b1da7ee-4470-4ab5-b1a7-53ac92b4e4d3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012721_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM TCGA-AO-A12C TCGA-AO-A12C-01A TCGA-AO-A12C-01A-11R-A10J-07 3b1da7ee-4470-4ab5-b1a7-53ac92b4e4d3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012721_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM TCGA-AO-A12C TCGA-AO-A12C-01A TCGA-AO-A12C-01A-11R-A10J-07 3b1da7ee-4470-4ab5-b1a7-53ac92b4e4d3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012721_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM TCGA-AO-A12C TCGA-AO-A12C-01A TCGA-AO-A12C-01A-11R-A10J-07 3b1da7ee-4470-4ab5-b1a7-53ac92b4e4d3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_577966.TCGA-AO-A12C-01A-11R-A10J-07.110509_UNC14-SN744_0110_AC02MVABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A12C TCGA-AO-A12C-01A TCGA-AO-A12C-01A-11R-A10J-07 3b1da7ee-4470-4ab5-b1a7-53ac92b4e4d3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_578066.TCGA-AO-A12C-01A-11R-A10J-07.110509_UNC14-SN744_0110_AC02MVABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A12C TCGA-AO-A12C-01A TCGA-AO-A12C-01A-11R-A10J-07 3b1da7ee-4470-4ab5-b1a7-53ac92b4e4d3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_578148.TCGA-AO-A12C-01A-11R-A10J-07.110509_UNC14-SN744_0110_AC02MVABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A12C TCGA-AO-A12C-01A TCGA-AO-A12C-01A-11W-A124-09 567ebe54-4d37-43e3-8d4e-6c6086e452d0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12C TCGA-AO-A12C-10A TCGA-AO-A12C-10A-01D-A10K-02 1e861fc5-7151-4b20-bfc9-c38a9f09723a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12C TCGA-AO-A12C-10A TCGA-AO-A12C-10A-01D-A10L-01 1c7a2fd1-f105-46ae-9139-c2a3a0392b4f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12C TCGA-AO-A12C-10A TCGA-AO-A12C-10A-01D-A10L-01 1c7a2fd1-f105-46ae-9139-c2a3a0392b4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D07_734786.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AO-A12C TCGA-AO-A12C-10A TCGA-AO-A12C-10A-01D-A10L-01 1c7a2fd1-f105-46ae-9139-c2a3a0392b4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D07_734786.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12C TCGA-AO-A12C-10A TCGA-AO-A12C-10A-01D-A10L-01 1c7a2fd1-f105-46ae-9139-c2a3a0392b4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D07_734786.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12C TCGA-AO-A12C-10A TCGA-AO-A12C-10A-01D-A10L-01 1c7a2fd1-f105-46ae-9139-c2a3a0392b4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D07_734786.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12C TCGA-AO-A12C-10A TCGA-AO-A12C-10A-01D-A10L-01 1c7a2fd1-f105-46ae-9139-c2a3a0392b4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D07_734786.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12C TCGA-AO-A12C-10A TCGA-AO-A12C-10A-01D-A10L-01 1c7a2fd1-f105-46ae-9139-c2a3a0392b4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D07_734786.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12C TCGA-AO-A12C-10A TCGA-AO-A12C-10A-01D-A10L-01 1c7a2fd1-f105-46ae-9139-c2a3a0392b4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D07_734786.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12C TCGA-AO-A12C-10A TCGA-AO-A12C-10A-01D-A10L-01 1c7a2fd1-f105-46ae-9139-c2a3a0392b4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D07_734786.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AO-A12C TCGA-AO-A12C-10A TCGA-AO-A12C-10A-01D-A10M-09 a7620f45-3154-4197-a742-fcb5cfe511b8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12C TCGA-AO-A12C-10A TCGA-AO-A12C-10A-01W-A124-09 ebef845d-a623-412e-8c62-16bad2152969 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11D-A10X-02 6d1f1074-cf0c-43dc-ba2f-c57d9d650df8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11D-A10Y-09 b3065cfe-3067-4f08-8c82-46f10c1ec279 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11D-A10Y-09 b3065cfe-3067-4f08-8c82-46f10c1ec279 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11D-A111-01 83122683-8f67-481a-92f2-f60687a83ba3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11D-A111-01 83122683-8f67-481a-92f2-f60687a83ba3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F12_735104.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11D-A111-01 83122683-8f67-481a-92f2-f60687a83ba3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F12_735104.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11D-A111-01 83122683-8f67-481a-92f2-f60687a83ba3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F12_735104.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11D-A111-01 83122683-8f67-481a-92f2-f60687a83ba3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F12_735104.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11D-A111-01 83122683-8f67-481a-92f2-f60687a83ba3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F12_735104.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11D-A111-01 83122683-8f67-481a-92f2-f60687a83ba3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F12_735104.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11D-A111-01 83122683-8f67-481a-92f2-f60687a83ba3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F12_735104.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11D-A111-01 83122683-8f67-481a-92f2-f60687a83ba3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F12_735104.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11D-A112-05 92250831-97e6-41cd-9255-4fc97ed978ad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11D-A112-05 92250831-97e6-41cd-9255-4fc97ed978ad DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-AO-A12D-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11D-A112-05 92250831-97e6-41cd-9255-4fc97ed978ad DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-AO-A12D-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11D-A112-05 92250831-97e6-41cd-9255-4fc97ed978ad DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-AO-A12D-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11R-A114-13 45d2b569-0dd4-485b-bfa4-5f373a84286c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11R-A114-13 45d2b569-0dd4-485b-bfa4-5f373a84286c miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AO-A12D-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11R-A114-13 45d2b569-0dd4-485b-bfa4-5f373a84286c miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AO-A12D-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11R-A115-07 4adf4439-3d60-44ac-a6f0-9f42cc081a93 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11R-A115-07 4adf4439-3d60-44ac-a6f0-9f42cc081a93 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012834_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11R-A115-07 4adf4439-3d60-44ac-a6f0-9f42cc081a93 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012834_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11R-A115-07 4adf4439-3d60-44ac-a6f0-9f42cc081a93 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012834_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11R-A115-07 4adf4439-3d60-44ac-a6f0-9f42cc081a93 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442032.TCGA-AO-A12D-01A-11R-A115-07.110628_UNC10-SN254_0238_AC03J5ABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11R-A115-07 4adf4439-3d60-44ac-a6f0-9f42cc081a93 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442071.TCGA-AO-A12D-01A-11R-A115-07.110628_UNC10-SN254_0238_AC03J5ABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11R-A115-07 4adf4439-3d60-44ac-a6f0-9f42cc081a93 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442211.TCGA-AO-A12D-01A-11R-A115-07.110628_UNC10-SN254_0238_AC03J5ABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A12D TCGA-AO-A12D-01A TCGA-AO-A12D-01A-11W-A12T-09 75b1d273-2975-4994-984a-fdf664a746e2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12D TCGA-AO-A12D-10A TCGA-AO-A12D-10A-01D-A10Z-02 6d881397-d609-4a35-85f6-abd055e46ace Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12D TCGA-AO-A12D-10A TCGA-AO-A12D-10A-01D-A110-09 d1f36155-9a05-4343-9a9a-c25286291304 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12D TCGA-AO-A12D-10A TCGA-AO-A12D-10A-01D-A110-09 d1f36155-9a05-4343-9a9a-c25286291304 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A12D TCGA-AO-A12D-10A TCGA-AO-A12D-10A-01D-A113-01 1fcc133f-1f37-43e1-9845-7431a3650e90 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12D TCGA-AO-A12D-10A TCGA-AO-A12D-10A-01D-A113-01 1fcc133f-1f37-43e1-9845-7431a3650e90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C02_735112.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-AO-A12D TCGA-AO-A12D-10A TCGA-AO-A12D-10A-01D-A113-01 1fcc133f-1f37-43e1-9845-7431a3650e90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C02_735112.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12D TCGA-AO-A12D-10A TCGA-AO-A12D-10A-01D-A113-01 1fcc133f-1f37-43e1-9845-7431a3650e90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C02_735112.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12D TCGA-AO-A12D-10A TCGA-AO-A12D-10A-01D-A113-01 1fcc133f-1f37-43e1-9845-7431a3650e90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C02_735112.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12D TCGA-AO-A12D-10A TCGA-AO-A12D-10A-01D-A113-01 1fcc133f-1f37-43e1-9845-7431a3650e90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C02_735112.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12D TCGA-AO-A12D-10A TCGA-AO-A12D-10A-01D-A113-01 1fcc133f-1f37-43e1-9845-7431a3650e90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C02_735112.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12D TCGA-AO-A12D-10A TCGA-AO-A12D-10A-01D-A113-01 1fcc133f-1f37-43e1-9845-7431a3650e90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C02_735112.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12D TCGA-AO-A12D-10A TCGA-AO-A12D-10A-01D-A113-01 1fcc133f-1f37-43e1-9845-7431a3650e90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C02_735112.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-AO-A12D TCGA-AO-A12D-10A TCGA-AO-A12D-10A-01W-A12U-09 6ab5f85a-da6c-460a-ad1f-509746b91cad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11D-A10K-02 fc6e41a6-9aee-4aca-a950-b848bda4ceab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11D-A10L-01 ecb453b9-9594-424f-9a73-be8f90737a6a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11D-A10L-01 ecb453b9-9594-424f-9a73-be8f90737a6a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E06_734622.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11D-A10L-01 ecb453b9-9594-424f-9a73-be8f90737a6a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E06_734622.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11D-A10L-01 ecb453b9-9594-424f-9a73-be8f90737a6a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E06_734622.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11D-A10L-01 ecb453b9-9594-424f-9a73-be8f90737a6a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E06_734622.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11D-A10L-01 ecb453b9-9594-424f-9a73-be8f90737a6a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E06_734622.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11D-A10L-01 ecb453b9-9594-424f-9a73-be8f90737a6a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E06_734622.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11D-A10L-01 ecb453b9-9594-424f-9a73-be8f90737a6a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E06_734622.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11D-A10L-01 ecb453b9-9594-424f-9a73-be8f90737a6a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E06_734622.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11D-A10M-09 b3990b59-e2f4-4759-8eb0-11ad3c34ac50 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11D-A10M-09 b3990b59-e2f4-4759-8eb0-11ad3c34ac50 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11D-A10N-05 4e7d4d64-f536-4348-b075-969f002dcd8e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11D-A10N-05 4e7d4d64-f536-4348-b075-969f002dcd8e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486017_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11D-A10N-05 4e7d4d64-f536-4348-b075-969f002dcd8e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486017_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11D-A10N-05 4e7d4d64-f536-4348-b075-969f002dcd8e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-AO-A12E-01A-11D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11D-A10N-05 4e7d4d64-f536-4348-b075-969f002dcd8e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-AO-A12E-01A-11D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11R-A10I-13 944021a6-7706-4e7f-af0f-d7dd2f128e39 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11R-A10I-13 944021a6-7706-4e7f-af0f-d7dd2f128e39 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A12E-01A-11R-A10I-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11R-A10I-13 944021a6-7706-4e7f-af0f-d7dd2f128e39 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A12E-01A-11R-A10I-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11R-A10J-07 222c7e4d-f6ed-4db0-ba36-1670159cee1b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11R-A10J-07 222c7e4d-f6ed-4db0-ba36-1670159cee1b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012725_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11R-A10J-07 222c7e4d-f6ed-4db0-ba36-1670159cee1b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012725_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11R-A10J-07 222c7e4d-f6ed-4db0-ba36-1670159cee1b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012725_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11R-A10J-07 222c7e4d-f6ed-4db0-ba36-1670159cee1b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442747.TCGA-AO-A12E-01A-11R-A10J-07.110509_UNC14-SN744_0110_AC02MVABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11R-A10J-07 222c7e4d-f6ed-4db0-ba36-1670159cee1b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442754.TCGA-AO-A12E-01A-11R-A10J-07.110509_UNC14-SN744_0110_AC02MVABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11R-A10J-07 222c7e4d-f6ed-4db0-ba36-1670159cee1b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442800.TCGA-AO-A12E-01A-11R-A10J-07.110509_UNC14-SN744_0110_AC02MVABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A12E TCGA-AO-A12E-01A TCGA-AO-A12E-01A-11W-A124-09 d0be1ab0-d63d-4504-ab3a-f14450eb20c5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12E TCGA-AO-A12E-10A TCGA-AO-A12E-10A-01D-A10K-02 619f9d5d-7ad3-4582-8a35-71502a47d3ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12E TCGA-AO-A12E-10A TCGA-AO-A12E-10A-01D-A10L-01 7addfc42-918e-4719-8122-dab358fda881 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H08_734654.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H08_734654.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H08_734654.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H08_734654.ismpolish.data.txt'. TCGA-AO-A12E TCGA-AO-A12E-10A TCGA-AO-A12E-10A-01D-A10L-01 7addfc42-918e-4719-8122-dab358fda881 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H08_734654.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H08_734654.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H08_734654.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H08_734654.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H08_734654.ismpolish.data.txt'. TCGA-AO-A12E TCGA-AO-A12E-10A TCGA-AO-A12E-10A-01D-A10L-01 7addfc42-918e-4719-8122-dab358fda881 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H08_734654.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H08_734654.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H08_734654.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H08_734654.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H08_734654.ismpolish.data.txt'. TCGA-AO-A12E TCGA-AO-A12E-10A TCGA-AO-A12E-10A-01D-A10M-09 6158f7a6-f20f-48ec-ae6d-657f09f9a6f0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12E TCGA-AO-A12E-10A TCGA-AO-A12E-10A-01D-A10M-09 6158f7a6-f20f-48ec-ae6d-657f09f9a6f0 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A12E TCGA-AO-A12E-10A TCGA-AO-A12E-10A-01W-A124-09 a233afe2-ad4d-435c-8d8c-728017435ce4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11D-A10X-02 58cb3628-57ae-43a6-bf32-9c1370e1dec9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11D-A10Y-09 d1617673-57c2-40c1-a970-f3692ee13cf3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11D-A10Y-09 d1617673-57c2-40c1-a970-f3692ee13cf3 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11D-A111-01 d36528cb-bb4a-4878-abf6-1709a1a0fb7e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11D-A111-01 d36528cb-bb4a-4878-abf6-1709a1a0fb7e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H07_735082.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11D-A111-01 d36528cb-bb4a-4878-abf6-1709a1a0fb7e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H07_735082.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11D-A111-01 d36528cb-bb4a-4878-abf6-1709a1a0fb7e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H07_735082.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11D-A111-01 d36528cb-bb4a-4878-abf6-1709a1a0fb7e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H07_735082.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11D-A111-01 d36528cb-bb4a-4878-abf6-1709a1a0fb7e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H07_735082.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11D-A111-01 d36528cb-bb4a-4878-abf6-1709a1a0fb7e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H07_735082.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11D-A111-01 d36528cb-bb4a-4878-abf6-1709a1a0fb7e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H07_735082.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11D-A111-01 d36528cb-bb4a-4878-abf6-1709a1a0fb7e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H07_735082.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11D-A112-05 df487f0c-6dad-4887-b2ff-8286a76a6aa3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11D-A112-05 df487f0c-6dad-4887-b2ff-8286a76a6aa3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-AO-A12F-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11D-A112-05 df487f0c-6dad-4887-b2ff-8286a76a6aa3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-AO-A12F-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11D-A112-05 df487f0c-6dad-4887-b2ff-8286a76a6aa3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-AO-A12F-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11R-A114-13 d4e58934-623f-4524-a8a3-53b5684c0744 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11R-A114-13 d4e58934-623f-4524-a8a3-53b5684c0744 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AO-A12F-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11R-A114-13 d4e58934-623f-4524-a8a3-53b5684c0744 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AO-A12F-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11R-A115-07 05610046-ec77-4592-892a-464a81d55c45 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11R-A115-07 05610046-ec77-4592-892a-464a81d55c45 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012746_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11R-A115-07 05610046-ec77-4592-892a-464a81d55c45 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012746_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11R-A115-07 05610046-ec77-4592-892a-464a81d55c45 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012746_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11R-A115-07 05610046-ec77-4592-892a-464a81d55c45 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_448893.TCGA-AO-A12F-01A-11R-A115-07.110608_UNC13-SN749_0073_BD0CV8ABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11R-A115-07 05610046-ec77-4592-892a-464a81d55c45 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_448898.TCGA-AO-A12F-01A-11R-A115-07.110608_UNC13-SN749_0073_BD0CV8ABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11R-A115-07 05610046-ec77-4592-892a-464a81d55c45 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_449282.TCGA-AO-A12F-01A-11R-A115-07.110608_UNC13-SN749_0073_BD0CV8ABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A12F TCGA-AO-A12F-01A TCGA-AO-A12F-01A-11W-A12T-09 dbb62961-c02d-4ecc-86b6-d85e05e45e5d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12F TCGA-AO-A12F-10A TCGA-AO-A12F-10A-01D-A10Z-02 0c568d74-0b37-419a-8fc4-a9427562de4b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12F TCGA-AO-A12F-10A TCGA-AO-A12F-10A-01D-A110-09 be77b3ee-bdc2-4208-8894-af0e15e43af0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12F TCGA-AO-A12F-10A TCGA-AO-A12F-10A-01D-A110-09 be77b3ee-bdc2-4208-8894-af0e15e43af0 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A12F TCGA-AO-A12F-10A TCGA-AO-A12F-10A-01D-A113-01 7c7439b4-3bf8-48fd-8860-b672ed092c17 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12F TCGA-AO-A12F-10A TCGA-AO-A12F-10A-01D-A113-01 7c7439b4-3bf8-48fd-8860-b672ed092c17 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A11_735188.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-AO-A12F TCGA-AO-A12F-10A TCGA-AO-A12F-10A-01D-A113-01 7c7439b4-3bf8-48fd-8860-b672ed092c17 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A11_735188.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12F TCGA-AO-A12F-10A TCGA-AO-A12F-10A-01D-A113-01 7c7439b4-3bf8-48fd-8860-b672ed092c17 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A11_735188.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12F TCGA-AO-A12F-10A TCGA-AO-A12F-10A-01D-A113-01 7c7439b4-3bf8-48fd-8860-b672ed092c17 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A11_735188.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12F TCGA-AO-A12F-10A TCGA-AO-A12F-10A-01D-A113-01 7c7439b4-3bf8-48fd-8860-b672ed092c17 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A11_735188.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12F TCGA-AO-A12F-10A TCGA-AO-A12F-10A-01D-A113-01 7c7439b4-3bf8-48fd-8860-b672ed092c17 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A11_735188.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12F TCGA-AO-A12F-10A TCGA-AO-A12F-10A-01D-A113-01 7c7439b4-3bf8-48fd-8860-b672ed092c17 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A11_735188.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12F TCGA-AO-A12F-10A TCGA-AO-A12F-10A-01D-A113-01 7c7439b4-3bf8-48fd-8860-b672ed092c17 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A11_735188.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-AO-A12F TCGA-AO-A12F-10A TCGA-AO-A12F-10A-01W-A12U-09 c83aa4d8-54b6-4e8c-a04d-9404a4ef8f2e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11D-A10K-02 0f8f099d-bec7-4124-b118-3a3f01222a68 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11D-A10L-01 4a2c3e4c-941a-4d08-9d30-386ac70cd657 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11D-A10L-01 4a2c3e4c-941a-4d08-9d30-386ac70cd657 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D08_734752.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11D-A10L-01 4a2c3e4c-941a-4d08-9d30-386ac70cd657 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D08_734752.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11D-A10L-01 4a2c3e4c-941a-4d08-9d30-386ac70cd657 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D08_734752.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11D-A10L-01 4a2c3e4c-941a-4d08-9d30-386ac70cd657 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D08_734752.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11D-A10L-01 4a2c3e4c-941a-4d08-9d30-386ac70cd657 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D08_734752.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11D-A10L-01 4a2c3e4c-941a-4d08-9d30-386ac70cd657 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D08_734752.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11D-A10L-01 4a2c3e4c-941a-4d08-9d30-386ac70cd657 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D08_734752.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11D-A10L-01 4a2c3e4c-941a-4d08-9d30-386ac70cd657 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D08_734752.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11D-A10M-09 5b9d3741-2aa3-489b-93e6-3b5376b80d48 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11D-A10M-09 5b9d3741-2aa3-489b-93e6-3b5376b80d48 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11D-A10N-05 f9f4986f-5e38-4388-a597-0910ec5229f0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11D-A10N-05 f9f4986f-5e38-4388-a597-0910ec5229f0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486017_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11D-A10N-05 f9f4986f-5e38-4388-a597-0910ec5229f0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486017_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11D-A10N-05 f9f4986f-5e38-4388-a597-0910ec5229f0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-AO-A12G-01A-11D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11D-A10N-05 f9f4986f-5e38-4388-a597-0910ec5229f0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-AO-A12G-01A-11D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11R-A10I-13 0631f6b4-7695-42f3-ba5f-4e5eff6908ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11R-A10I-13 0631f6b4-7695-42f3-ba5f-4e5eff6908ef miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A12G-01A-11R-A10I-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11R-A10I-13 0631f6b4-7695-42f3-ba5f-4e5eff6908ef miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AO-A12G-01A-11R-A10I-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11R-A10J-07 348a0fd6-eb6b-4550-a26a-3896c4963b3a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11R-A10J-07 348a0fd6-eb6b-4550-a26a-3896c4963b3a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012703_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11R-A10J-07 348a0fd6-eb6b-4550-a26a-3896c4963b3a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012703_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11R-A10J-07 348a0fd6-eb6b-4550-a26a-3896c4963b3a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012703_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11R-A10J-07 348a0fd6-eb6b-4550-a26a-3896c4963b3a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442644.TCGA-AO-A12G-01A-11R-A10J-07.110509_UNC14-SN744_0110_AC02MVABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11R-A10J-07 348a0fd6-eb6b-4550-a26a-3896c4963b3a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442675.TCGA-AO-A12G-01A-11R-A10J-07.110509_UNC14-SN744_0110_AC02MVABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11R-A10J-07 348a0fd6-eb6b-4550-a26a-3896c4963b3a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442730.TCGA-AO-A12G-01A-11R-A10J-07.110509_UNC14-SN744_0110_AC02MVABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A12G TCGA-AO-A12G-01A TCGA-AO-A12G-01A-11W-A124-09 e017d743-d1ad-45e7-84e1-43565e00d294 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12G TCGA-AO-A12G-10A TCGA-AO-A12G-10A-01D-A10K-02 0483eb7b-3ce0-4f09-9f32-3287ddc34968 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12G TCGA-AO-A12G-10A TCGA-AO-A12G-10A-01D-A10L-01 23bef6b1-627b-4963-b99b-41a571896058 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12G TCGA-AO-A12G-10A TCGA-AO-A12G-10A-01D-A10L-01 23bef6b1-627b-4963-b99b-41a571896058 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F12_734782.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AO-A12G TCGA-AO-A12G-10A TCGA-AO-A12G-10A-01D-A10L-01 23bef6b1-627b-4963-b99b-41a571896058 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F12_734782.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12G TCGA-AO-A12G-10A TCGA-AO-A12G-10A-01D-A10L-01 23bef6b1-627b-4963-b99b-41a571896058 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F12_734782.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12G TCGA-AO-A12G-10A TCGA-AO-A12G-10A-01D-A10L-01 23bef6b1-627b-4963-b99b-41a571896058 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F12_734782.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12G TCGA-AO-A12G-10A TCGA-AO-A12G-10A-01D-A10L-01 23bef6b1-627b-4963-b99b-41a571896058 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F12_734782.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12G TCGA-AO-A12G-10A TCGA-AO-A12G-10A-01D-A10L-01 23bef6b1-627b-4963-b99b-41a571896058 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F12_734782.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12G TCGA-AO-A12G-10A TCGA-AO-A12G-10A-01D-A10L-01 23bef6b1-627b-4963-b99b-41a571896058 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F12_734782.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AO-A12G TCGA-AO-A12G-10A TCGA-AO-A12G-10A-01D-A10L-01 23bef6b1-627b-4963-b99b-41a571896058 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F12_734782.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AO-A12G TCGA-AO-A12G-10A TCGA-AO-A12G-10A-01D-A10M-09 8da3bacc-e61b-431b-a25f-d70d4c8dbe23 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12G TCGA-AO-A12G-10A TCGA-AO-A12G-10A-01D-A10M-09 8da3bacc-e61b-431b-a25f-d70d4c8dbe23 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A12G TCGA-AO-A12G-10A TCGA-AO-A12G-10A-01W-A124-09 bcee83f0-f80d-49dc-90ab-4d0638abb652 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11D-A10X-02 0018ce1e-21f6-41cc-a93e-7633f6f76215 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11D-A10Y-09 5a535c49-d42e-43c6-9d32-dc76f28d4f0f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11D-A10Y-09 5a535c49-d42e-43c6-9d32-dc76f28d4f0f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11D-A111-01 099a5aae-f24a-47e6-b40d-a0db5c009c27 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11D-A111-01 099a5aae-f24a-47e6-b40d-a0db5c009c27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D06_735186.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11D-A111-01 099a5aae-f24a-47e6-b40d-a0db5c009c27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D06_735186.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11D-A111-01 099a5aae-f24a-47e6-b40d-a0db5c009c27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D06_735186.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11D-A111-01 099a5aae-f24a-47e6-b40d-a0db5c009c27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D06_735186.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11D-A111-01 099a5aae-f24a-47e6-b40d-a0db5c009c27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D06_735186.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11D-A111-01 099a5aae-f24a-47e6-b40d-a0db5c009c27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D06_735186.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11D-A111-01 099a5aae-f24a-47e6-b40d-a0db5c009c27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D06_735186.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11D-A111-01 099a5aae-f24a-47e6-b40d-a0db5c009c27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D06_735186.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11D-A112-05 ebbba9f9-90c7-4942-9f23-4e4325ac7e78 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11D-A112-05 ebbba9f9-90c7-4942-9f23-4e4325ac7e78 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-AO-A12H-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11D-A112-05 ebbba9f9-90c7-4942-9f23-4e4325ac7e78 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-AO-A12H-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11D-A112-05 ebbba9f9-90c7-4942-9f23-4e4325ac7e78 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-AO-A12H-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11R-A114-13 a6a546a5-eaff-49f0-bb98-5a99835bdda9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11R-A114-13 a6a546a5-eaff-49f0-bb98-5a99835bdda9 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AO-A12H-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11R-A114-13 a6a546a5-eaff-49f0-bb98-5a99835bdda9 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AO-A12H-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11R-A115-07 71b58051-3bf8-4dfb-a431-c8aceab7c799 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11R-A115-07 71b58051-3bf8-4dfb-a431-c8aceab7c799 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012763_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11R-A115-07 71b58051-3bf8-4dfb-a431-c8aceab7c799 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012763_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11R-A115-07 71b58051-3bf8-4dfb-a431-c8aceab7c799 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012763_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11R-A115-07 71b58051-3bf8-4dfb-a431-c8aceab7c799 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_448869.TCGA-AO-A12H-01A-11R-A115-07.110608_UNC13-SN749_0073_BD0CV8ABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11R-A115-07 71b58051-3bf8-4dfb-a431-c8aceab7c799 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_448875.TCGA-AO-A12H-01A-11R-A115-07.110608_UNC13-SN749_0073_BD0CV8ABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11R-A115-07 71b58051-3bf8-4dfb-a431-c8aceab7c799 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_449234.TCGA-AO-A12H-01A-11R-A115-07.110608_UNC13-SN749_0073_BD0CV8ABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A12H TCGA-AO-A12H-01A TCGA-AO-A12H-01A-11W-A12T-09 bffe3b69-044d-4794-ab9e-5a6496ce50c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12H TCGA-AO-A12H-10A TCGA-AO-A12H-10A-01D-A10Z-02 214b3c7c-7631-4995-8a84-1cd9a564936a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12H TCGA-AO-A12H-10A TCGA-AO-A12H-10A-01D-A110-09 ef348ec7-f3d5-41d6-af09-65f81ebd2b46 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12H TCGA-AO-A12H-10A TCGA-AO-A12H-10A-01D-A110-09 ef348ec7-f3d5-41d6-af09-65f81ebd2b46 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-AO-A12H TCGA-AO-A12H-10A TCGA-AO-A12H-10A-01D-A113-01 ccd49902-0f98-4613-a490-339d0b29a4c0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A12H TCGA-AO-A12H-10A TCGA-AO-A12H-10A-01D-A113-01 ccd49902-0f98-4613-a490-339d0b29a4c0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C06_735138.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-AO-A12H TCGA-AO-A12H-10A TCGA-AO-A12H-10A-01D-A113-01 ccd49902-0f98-4613-a490-339d0b29a4c0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C06_735138.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12H TCGA-AO-A12H-10A TCGA-AO-A12H-10A-01D-A113-01 ccd49902-0f98-4613-a490-339d0b29a4c0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C06_735138.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12H TCGA-AO-A12H-10A TCGA-AO-A12H-10A-01D-A113-01 ccd49902-0f98-4613-a490-339d0b29a4c0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C06_735138.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12H TCGA-AO-A12H-10A TCGA-AO-A12H-10A-01D-A113-01 ccd49902-0f98-4613-a490-339d0b29a4c0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C06_735138.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12H TCGA-AO-A12H-10A TCGA-AO-A12H-10A-01D-A113-01 ccd49902-0f98-4613-a490-339d0b29a4c0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C06_735138.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12H TCGA-AO-A12H-10A TCGA-AO-A12H-10A-01D-A113-01 ccd49902-0f98-4613-a490-339d0b29a4c0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C06_735138.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AO-A12H TCGA-AO-A12H-10A TCGA-AO-A12H-10A-01D-A113-01 ccd49902-0f98-4613-a490-339d0b29a4c0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C06_735138.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-AO-A12H TCGA-AO-A12H-10A TCGA-AO-A12H-10A-01W-A12U-09 1771adda-8254-4e25-b95c-53c8e84870d9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AO-A12H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AO-A1KO TCGA-AO-A1KO-01A TCGA-AO-A1KO-01A-31D-A13I-02 c89709e6-5002-429b-8352-83928ed29653 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KO TCGA-AO-A1KO-01A TCGA-AO-A1KO-01A-31D-A13J-01 5152cac8-5c7e-419c-a4da-46a1607db2e8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KO TCGA-AO-A1KO-01A TCGA-AO-A1KO-01A-31D-A13J-01 5152cac8-5c7e-419c-a4da-46a1607db2e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B12_772022.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-AO-A1KO TCGA-AO-A1KO-01A TCGA-AO-A1KO-01A-31D-A13J-01 5152cac8-5c7e-419c-a4da-46a1607db2e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B12_772022.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KO TCGA-AO-A1KO-01A TCGA-AO-A1KO-01A-31D-A13J-01 5152cac8-5c7e-419c-a4da-46a1607db2e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B12_772022.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KO TCGA-AO-A1KO-01A TCGA-AO-A1KO-01A-31D-A13J-01 5152cac8-5c7e-419c-a4da-46a1607db2e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B12_772022.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KO TCGA-AO-A1KO-01A TCGA-AO-A1KO-01A-31D-A13J-01 5152cac8-5c7e-419c-a4da-46a1607db2e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B12_772022.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KO TCGA-AO-A1KO-01A TCGA-AO-A1KO-01A-31D-A13J-01 5152cac8-5c7e-419c-a4da-46a1607db2e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B12_772022.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KO TCGA-AO-A1KO-01A TCGA-AO-A1KO-01A-31D-A13J-01 5152cac8-5c7e-419c-a4da-46a1607db2e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B12_772022.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KO TCGA-AO-A1KO-01A TCGA-AO-A1KO-01A-31D-A13J-01 5152cac8-5c7e-419c-a4da-46a1607db2e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B12_772022.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-AO-A1KO TCGA-AO-A1KO-01A TCGA-AO-A1KO-01A-31D-A13K-05 0a2e9639-fca0-4163-a3e6-bec44ce649e0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KO TCGA-AO-A1KO-01A TCGA-AO-A1KO-01A-31D-A13K-05 0a2e9639-fca0-4163-a3e6-bec44ce649e0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818139_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-AO-A1KO TCGA-AO-A1KO-01A TCGA-AO-A1KO-01A-31D-A13K-05 0a2e9639-fca0-4163-a3e6-bec44ce649e0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818139_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-AO-A1KO TCGA-AO-A1KO-01A TCGA-AO-A1KO-01A-31D-A13K-05 0a2e9639-fca0-4163-a3e6-bec44ce649e0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-AO-A1KO-01A-31D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-AO-A1KO TCGA-AO-A1KO-01A TCGA-AO-A1KO-01A-31D-A13K-05 0a2e9639-fca0-4163-a3e6-bec44ce649e0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-AO-A1KO-01A-31D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-AO-A1KO TCGA-AO-A1KO-01A TCGA-AO-A1KO-01A-31D-A13L-09 804cf4b8-b25d-4f87-8527-f6d1a1e46041 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KO TCGA-AO-A1KO-01A TCGA-AO-A1KO-01A-31D-A188-09 2cdecb2b-40b1-4419-bcd9-101cee78966c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KO TCGA-AO-A1KO-01A TCGA-AO-A1KO-01A-31R-A13P-13 1fb66e4e-c018-40c6-ab55-08c21299f30a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KO TCGA-AO-A1KO-01A TCGA-AO-A1KO-01A-31R-A13P-13 1fb66e4e-c018-40c6-ab55-08c21299f30a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AO-A1KO-01A-31R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-AO-A1KO TCGA-AO-A1KO-01A TCGA-AO-A1KO-01A-31R-A13P-13 1fb66e4e-c018-40c6-ab55-08c21299f30a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AO-A1KO-01A-31R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-AO-A1KO TCGA-AO-A1KO-01A TCGA-AO-A1KO-01A-31R-A13Q-07 62a37d05-a1f5-48e1-b4cd-7b24b5ca0b34 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KO TCGA-AO-A1KO-01A TCGA-AO-A1KO-01A-31R-A13Q-07 62a37d05-a1f5-48e1-b4cd-7b24b5ca0b34 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_401786.TCGA-AO-A1KO-01A-31R-A13Q-07.110729_UNC15-SN850_0102_BD0E5DABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A1KO TCGA-AO-A1KO-01A TCGA-AO-A1KO-01A-31R-A13Q-07 62a37d05-a1f5-48e1-b4cd-7b24b5ca0b34 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_401801.TCGA-AO-A1KO-01A-31R-A13Q-07.110729_UNC15-SN850_0102_BD0E5DABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A1KO TCGA-AO-A1KO-01A TCGA-AO-A1KO-01A-31R-A13Q-07 62a37d05-a1f5-48e1-b4cd-7b24b5ca0b34 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_401811.TCGA-AO-A1KO-01A-31R-A13Q-07.110729_UNC15-SN850_0102_BD0E5DABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A1KO TCGA-AO-A1KO-01A TCGA-AO-A1KO-01A-31W-A14Q-09 863635e2-71e4-4f82-9f1a-6bcfb26eebe7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KO TCGA-AO-A1KO-10A TCGA-AO-A1KO-10A-01D-A13M-02 0086959f-43d5-459d-8570-48f64abc4604 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KO TCGA-AO-A1KO-10A TCGA-AO-A1KO-10A-01D-A13N-01 cb6033ad-49db-4917-ae04-886df04f4b39 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KO TCGA-AO-A1KO-10A TCGA-AO-A1KO-10A-01D-A13N-01 cb6033ad-49db-4917-ae04-886df04f4b39 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E03_771968.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-AO-A1KO TCGA-AO-A1KO-10A TCGA-AO-A1KO-10A-01D-A13N-01 cb6033ad-49db-4917-ae04-886df04f4b39 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E03_771968.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KO TCGA-AO-A1KO-10A TCGA-AO-A1KO-10A-01D-A13N-01 cb6033ad-49db-4917-ae04-886df04f4b39 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E03_771968.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KO TCGA-AO-A1KO-10A TCGA-AO-A1KO-10A-01D-A13N-01 cb6033ad-49db-4917-ae04-886df04f4b39 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E03_771968.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KO TCGA-AO-A1KO-10A TCGA-AO-A1KO-10A-01D-A13N-01 cb6033ad-49db-4917-ae04-886df04f4b39 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E03_771968.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KO TCGA-AO-A1KO-10A TCGA-AO-A1KO-10A-01D-A13N-01 cb6033ad-49db-4917-ae04-886df04f4b39 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E03_771968.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KO TCGA-AO-A1KO-10A TCGA-AO-A1KO-10A-01D-A13N-01 cb6033ad-49db-4917-ae04-886df04f4b39 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E03_771968.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KO TCGA-AO-A1KO-10A TCGA-AO-A1KO-10A-01D-A13N-01 cb6033ad-49db-4917-ae04-886df04f4b39 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E03_771968.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-AO-A1KO TCGA-AO-A1KO-10A TCGA-AO-A1KO-10A-01D-A13O-09 9c3bd11e-386d-4ad4-a8c4-73eae17d537e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KO TCGA-AO-A1KO-10A TCGA-AO-A1KO-10A-01W-A14R-09 72675f1e-0cc0-48ff-b045-05ba428d6a3f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KP TCGA-AO-A1KP-01A TCGA-AO-A1KP-01A-11D-A13I-02 4e09a393-9270-4f39-99e8-8224fbdcf16e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KP TCGA-AO-A1KP-01A TCGA-AO-A1KP-01A-11D-A13J-01 a22ae2e3-fd36-4ec5-a76d-a34a3961060b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KP TCGA-AO-A1KP-01A TCGA-AO-A1KP-01A-11D-A13J-01 a22ae2e3-fd36-4ec5-a76d-a34a3961060b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A09_771988.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-AO-A1KP TCGA-AO-A1KP-01A TCGA-AO-A1KP-01A-11D-A13J-01 a22ae2e3-fd36-4ec5-a76d-a34a3961060b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A09_771988.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KP TCGA-AO-A1KP-01A TCGA-AO-A1KP-01A-11D-A13J-01 a22ae2e3-fd36-4ec5-a76d-a34a3961060b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A09_771988.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KP TCGA-AO-A1KP-01A TCGA-AO-A1KP-01A-11D-A13J-01 a22ae2e3-fd36-4ec5-a76d-a34a3961060b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A09_771988.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KP TCGA-AO-A1KP-01A TCGA-AO-A1KP-01A-11D-A13J-01 a22ae2e3-fd36-4ec5-a76d-a34a3961060b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A09_771988.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KP TCGA-AO-A1KP-01A TCGA-AO-A1KP-01A-11D-A13J-01 a22ae2e3-fd36-4ec5-a76d-a34a3961060b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A09_771988.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KP TCGA-AO-A1KP-01A TCGA-AO-A1KP-01A-11D-A13J-01 a22ae2e3-fd36-4ec5-a76d-a34a3961060b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A09_771988.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KP TCGA-AO-A1KP-01A TCGA-AO-A1KP-01A-11D-A13J-01 a22ae2e3-fd36-4ec5-a76d-a34a3961060b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A09_771988.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-AO-A1KP TCGA-AO-A1KP-01A TCGA-AO-A1KP-01A-11D-A13K-05 047f9742-8db5-4e52-85e9-abe3311b2449 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KP TCGA-AO-A1KP-01A TCGA-AO-A1KP-01A-11D-A13K-05 047f9742-8db5-4e52-85e9-abe3311b2449 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818144_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-AO-A1KP TCGA-AO-A1KP-01A TCGA-AO-A1KP-01A-11D-A13K-05 047f9742-8db5-4e52-85e9-abe3311b2449 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818144_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-AO-A1KP TCGA-AO-A1KP-01A TCGA-AO-A1KP-01A-11D-A13K-05 047f9742-8db5-4e52-85e9-abe3311b2449 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-AO-A1KP-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-AO-A1KP TCGA-AO-A1KP-01A TCGA-AO-A1KP-01A-11D-A13K-05 047f9742-8db5-4e52-85e9-abe3311b2449 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-AO-A1KP-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-AO-A1KP TCGA-AO-A1KP-01A TCGA-AO-A1KP-01A-11D-A13L-09 bc36db60-3f6b-42c4-b03e-b7c74c3dda5c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KP TCGA-AO-A1KP-01A TCGA-AO-A1KP-01A-11R-A13P-13 74ec47ef-c8c3-47cf-b1f7-217d7c24a12d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KP TCGA-AO-A1KP-01A TCGA-AO-A1KP-01A-11R-A13P-13 74ec47ef-c8c3-47cf-b1f7-217d7c24a12d miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AO-A1KP-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-AO-A1KP TCGA-AO-A1KP-01A TCGA-AO-A1KP-01A-11R-A13P-13 74ec47ef-c8c3-47cf-b1f7-217d7c24a12d miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AO-A1KP-01A-11R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-AO-A1KP TCGA-AO-A1KP-01A TCGA-AO-A1KP-01A-11R-A13Q-07 773a2357-99b8-40df-b657-f237d9735db9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KP TCGA-AO-A1KP-01A TCGA-AO-A1KP-01A-11R-A13Q-07 773a2357-99b8-40df-b657-f237d9735db9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_401726.TCGA-AO-A1KP-01A-11R-A13Q-07.110729_UNC15-SN850_0102_BD0E5DABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A1KP TCGA-AO-A1KP-01A TCGA-AO-A1KP-01A-11R-A13Q-07 773a2357-99b8-40df-b657-f237d9735db9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_401730.TCGA-AO-A1KP-01A-11R-A13Q-07.110729_UNC15-SN850_0102_BD0E5DABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A1KP TCGA-AO-A1KP-01A TCGA-AO-A1KP-01A-11R-A13Q-07 773a2357-99b8-40df-b657-f237d9735db9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_401779.TCGA-AO-A1KP-01A-11R-A13Q-07.110729_UNC15-SN850_0102_BD0E5DABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A1KP TCGA-AO-A1KP-01A TCGA-AO-A1KP-01A-11W-A14Q-09 7c6a17dd-4fca-4d27-8e7a-5b2649690a8b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KP TCGA-AO-A1KP-10A TCGA-AO-A1KP-10A-01D-A13M-02 f95d5314-f743-46aa-90ee-6a2fd4398b37 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KP TCGA-AO-A1KP-10A TCGA-AO-A1KP-10A-01D-A13N-01 002d83af-9d57-4ddf-b6e4-99d541a4359b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KP TCGA-AO-A1KP-10A TCGA-AO-A1KP-10A-01D-A13N-01 002d83af-9d57-4ddf-b6e4-99d541a4359b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B06_771992.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-AO-A1KP TCGA-AO-A1KP-10A TCGA-AO-A1KP-10A-01D-A13N-01 002d83af-9d57-4ddf-b6e4-99d541a4359b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B06_771992.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KP TCGA-AO-A1KP-10A TCGA-AO-A1KP-10A-01D-A13N-01 002d83af-9d57-4ddf-b6e4-99d541a4359b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B06_771992.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KP TCGA-AO-A1KP-10A TCGA-AO-A1KP-10A-01D-A13N-01 002d83af-9d57-4ddf-b6e4-99d541a4359b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B06_771992.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KP TCGA-AO-A1KP-10A TCGA-AO-A1KP-10A-01D-A13N-01 002d83af-9d57-4ddf-b6e4-99d541a4359b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B06_771992.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KP TCGA-AO-A1KP-10A TCGA-AO-A1KP-10A-01D-A13N-01 002d83af-9d57-4ddf-b6e4-99d541a4359b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B06_771992.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KP TCGA-AO-A1KP-10A TCGA-AO-A1KP-10A-01D-A13N-01 002d83af-9d57-4ddf-b6e4-99d541a4359b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B06_771992.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KP TCGA-AO-A1KP-10A TCGA-AO-A1KP-10A-01D-A13N-01 002d83af-9d57-4ddf-b6e4-99d541a4359b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B06_771992.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-AO-A1KP TCGA-AO-A1KP-10A TCGA-AO-A1KP-10A-01D-A13O-09 11dec887-7709-4330-a68c-d008779df669 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KP TCGA-AO-A1KP-10A TCGA-AO-A1KP-10A-01D-A17G-09 8369a9d7-488f-4063-938b-44c4ada11349 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KP TCGA-AO-A1KP-10A TCGA-AO-A1KP-10A-01W-A14R-09 ca375523-be3b-4d91-a319-227b0c988d7c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KQ TCGA-AO-A1KQ-01A TCGA-AO-A1KQ-01A-11D-A13I-02 d4679c99-c459-4ac2-a814-57ff6aa93331 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KQ TCGA-AO-A1KQ-01A TCGA-AO-A1KQ-01A-11D-A13J-01 ebc2cde9-7556-4c6d-94d4-b61e14efb0f3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KQ TCGA-AO-A1KQ-01A TCGA-AO-A1KQ-01A-11D-A13J-01 ebc2cde9-7556-4c6d-94d4-b61e14efb0f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F07_771876.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-AO-A1KQ TCGA-AO-A1KQ-01A TCGA-AO-A1KQ-01A-11D-A13J-01 ebc2cde9-7556-4c6d-94d4-b61e14efb0f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F07_771876.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KQ TCGA-AO-A1KQ-01A TCGA-AO-A1KQ-01A-11D-A13J-01 ebc2cde9-7556-4c6d-94d4-b61e14efb0f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F07_771876.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KQ TCGA-AO-A1KQ-01A TCGA-AO-A1KQ-01A-11D-A13J-01 ebc2cde9-7556-4c6d-94d4-b61e14efb0f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F07_771876.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KQ TCGA-AO-A1KQ-01A TCGA-AO-A1KQ-01A-11D-A13J-01 ebc2cde9-7556-4c6d-94d4-b61e14efb0f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F07_771876.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KQ TCGA-AO-A1KQ-01A TCGA-AO-A1KQ-01A-11D-A13J-01 ebc2cde9-7556-4c6d-94d4-b61e14efb0f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F07_771876.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KQ TCGA-AO-A1KQ-01A TCGA-AO-A1KQ-01A-11D-A13J-01 ebc2cde9-7556-4c6d-94d4-b61e14efb0f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F07_771876.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KQ TCGA-AO-A1KQ-01A TCGA-AO-A1KQ-01A-11D-A13J-01 ebc2cde9-7556-4c6d-94d4-b61e14efb0f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F07_771876.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-AO-A1KQ TCGA-AO-A1KQ-01A TCGA-AO-A1KQ-01A-11D-A13K-05 f2e6af71-e266-4f62-b77c-526346f7ea93 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KQ TCGA-AO-A1KQ-01A TCGA-AO-A1KQ-01A-11D-A13K-05 f2e6af71-e266-4f62-b77c-526346f7ea93 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818128_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-AO-A1KQ TCGA-AO-A1KQ-01A TCGA-AO-A1KQ-01A-11D-A13K-05 f2e6af71-e266-4f62-b77c-526346f7ea93 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818128_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-AO-A1KQ TCGA-AO-A1KQ-01A TCGA-AO-A1KQ-01A-11D-A13K-05 f2e6af71-e266-4f62-b77c-526346f7ea93 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-AO-A1KQ-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-AO-A1KQ TCGA-AO-A1KQ-01A TCGA-AO-A1KQ-01A-11D-A13K-05 f2e6af71-e266-4f62-b77c-526346f7ea93 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-AO-A1KQ-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-AO-A1KQ TCGA-AO-A1KQ-01A TCGA-AO-A1KQ-01A-11D-A13L-09 a98ddd48-8042-48a8-b2ca-2ddb6245c8e8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KQ TCGA-AO-A1KQ-01A TCGA-AO-A1KQ-01A-11R-A13P-13 908c9791-edaa-4369-abdf-c5b9f8ea7e47 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KQ TCGA-AO-A1KQ-01A TCGA-AO-A1KQ-01A-11R-A13P-13 908c9791-edaa-4369-abdf-c5b9f8ea7e47 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AO-A1KQ-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-AO-A1KQ TCGA-AO-A1KQ-01A TCGA-AO-A1KQ-01A-11R-A13P-13 908c9791-edaa-4369-abdf-c5b9f8ea7e47 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AO-A1KQ-01A-11R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-AO-A1KQ TCGA-AO-A1KQ-01A TCGA-AO-A1KQ-01A-11R-A13Q-07 204a78d9-67aa-4e49-b285-bbb25c6ed142 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KQ TCGA-AO-A1KQ-01A TCGA-AO-A1KQ-01A-11W-A14Q-09 792efc91-ca0b-45c5-a2e4-e31ce0e384ac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KQ TCGA-AO-A1KQ-10A TCGA-AO-A1KQ-10A-01D-A13M-02 f1184bd5-22e5-44e9-8095-b3fde494e654 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KQ TCGA-AO-A1KQ-10A TCGA-AO-A1KQ-10A-01D-A13N-01 09051907-24cd-49d7-836d-b3612865d4df Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D04_771920.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D04_771920.ismpolish.data.txt'. TCGA-AO-A1KQ TCGA-AO-A1KQ-10A TCGA-AO-A1KQ-10A-01D-A13N-01 09051907-24cd-49d7-836d-b3612865d4df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D04_771920.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D04_771920.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D04_771920.ismpolish.data.txt'. TCGA-AO-A1KQ TCGA-AO-A1KQ-10A TCGA-AO-A1KQ-10A-01D-A13N-01 09051907-24cd-49d7-836d-b3612865d4df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D04_771920.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D04_771920.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D04_771920.ismpolish.data.txt'. TCGA-AO-A1KQ TCGA-AO-A1KQ-10A TCGA-AO-A1KQ-10A-01D-A13O-09 0fdec366-3236-42af-89eb-136de42fd4e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KQ TCGA-AO-A1KQ-10A TCGA-AO-A1KQ-10A-01D-A188-09 d47c50f3-c9fc-49e4-8651-4643ce25907b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KQ TCGA-AO-A1KQ-10A TCGA-AO-A1KQ-10A-01W-A14R-09 cf9d3151-aee5-48b5-971b-6ccf0bc4adb0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KR TCGA-AO-A1KR-01A TCGA-AO-A1KR-01A-12D-A140-02 10ee8938-e5a7-484f-bf1d-46ab6f083487 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-AO-A1KR TCGA-AO-A1KR-01A TCGA-AO-A1KR-01A-12D-A141-01 0d7cde44-ec86-415a-8667-0ea894d1c344 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-AO-A1KR TCGA-AO-A1KR-01A TCGA-AO-A1KR-01A-12D-A141-01 0d7cde44-ec86-415a-8667-0ea894d1c344 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D04_778116.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-AO-A1KR TCGA-AO-A1KR-01A TCGA-AO-A1KR-01A-12D-A141-01 0d7cde44-ec86-415a-8667-0ea894d1c344 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D04_778116.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-AO-A1KR TCGA-AO-A1KR-01A TCGA-AO-A1KR-01A-12D-A141-01 0d7cde44-ec86-415a-8667-0ea894d1c344 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D04_778116.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-AO-A1KR TCGA-AO-A1KR-01A TCGA-AO-A1KR-01A-12D-A141-01 0d7cde44-ec86-415a-8667-0ea894d1c344 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D04_778116.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-AO-A1KR TCGA-AO-A1KR-01A TCGA-AO-A1KR-01A-12D-A141-01 0d7cde44-ec86-415a-8667-0ea894d1c344 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D04_778116.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-AO-A1KR TCGA-AO-A1KR-01A TCGA-AO-A1KR-01A-12D-A141-01 0d7cde44-ec86-415a-8667-0ea894d1c344 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D04_778116.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-AO-A1KR TCGA-AO-A1KR-01A TCGA-AO-A1KR-01A-12D-A141-01 0d7cde44-ec86-415a-8667-0ea894d1c344 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D04_778116.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-AO-A1KR TCGA-AO-A1KR-01A TCGA-AO-A1KR-01A-12D-A141-01 0d7cde44-ec86-415a-8667-0ea894d1c344 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D04_778116.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-AO-A1KR TCGA-AO-A1KR-01A TCGA-AO-A1KR-01A-12D-A142-09 d3b598d8-8a3b-4506-aa98-9fbc5b51afd4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-AO-A1KR TCGA-AO-A1KR-01A TCGA-AO-A1KR-01A-12D-A145-05 1ea44f19-78e2-445a-b312-39e2bf50bf8b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-AO-A1KR TCGA-AO-A1KR-01A TCGA-AO-A1KR-01A-12D-A145-05 1ea44f19-78e2-445a-b312-39e2bf50bf8b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818055_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-AO-A1KR TCGA-AO-A1KR-01A TCGA-AO-A1KR-01A-12D-A145-05 1ea44f19-78e2-445a-b312-39e2bf50bf8b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818055_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-AO-A1KR TCGA-AO-A1KR-01A TCGA-AO-A1KR-01A-12D-A145-05 1ea44f19-78e2-445a-b312-39e2bf50bf8b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-AO-A1KR-01A-12D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-AO-A1KR TCGA-AO-A1KR-01A TCGA-AO-A1KR-01A-12D-A145-05 1ea44f19-78e2-445a-b312-39e2bf50bf8b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-AO-A1KR-01A-12D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-AO-A1KR TCGA-AO-A1KR-01A TCGA-AO-A1KR-01A-12R-A143-13 8b034343-af08-482c-8c24-34458cdee571 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-AO-A1KR TCGA-AO-A1KR-01A TCGA-AO-A1KR-01A-12R-A143-13 8b034343-af08-482c-8c24-34458cdee571 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AO-A1KR-01A-12R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-AO-A1KR TCGA-AO-A1KR-01A TCGA-AO-A1KR-01A-12R-A143-13 8b034343-af08-482c-8c24-34458cdee571 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AO-A1KR-01A-12R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-AO-A1KR TCGA-AO-A1KR-01A TCGA-AO-A1KR-01A-12R-A144-07 6d22f538-114f-48b6-94ba-fb60151ed567 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-AO-A1KR TCGA-AO-A1KR-01A TCGA-AO-A1KR-01A-12R-A144-07 6d22f538-114f-48b6-94ba-fb60151ed567 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451103.TCGA-AO-A1KR-01A-12R-A144-07.110803_UNC15-SN850_0106_BD0DK2ABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A1KR TCGA-AO-A1KR-01A TCGA-AO-A1KR-01A-12R-A144-07 6d22f538-114f-48b6-94ba-fb60151ed567 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451113.TCGA-AO-A1KR-01A-12R-A144-07.110803_UNC15-SN850_0106_BD0DK2ABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A1KR TCGA-AO-A1KR-01A TCGA-AO-A1KR-01A-12R-A144-07 6d22f538-114f-48b6-94ba-fb60151ed567 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451130.TCGA-AO-A1KR-01A-12R-A144-07.110803_UNC15-SN850_0106_BD0DK2ABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A1KR TCGA-AO-A1KR-01A TCGA-AO-A1KR-01A-12W-A187-09 7756c068-78bd-413b-8d93-603b4db5783e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-AO-A1KR TCGA-AO-A1KR-10A TCGA-AO-A1KR-10A-01D-A140-02 ba2262e4-2af3-453f-a505-908e077f6f5f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-AO-A1KR TCGA-AO-A1KR-10A TCGA-AO-A1KR-10A-01D-A141-01 f3b89642-6481-4413-9781-47a3f8e0887b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-AO-A1KR TCGA-AO-A1KR-10A TCGA-AO-A1KR-10A-01D-A141-01 f3b89642-6481-4413-9781-47a3f8e0887b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F04_778026.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-AO-A1KR TCGA-AO-A1KR-10A TCGA-AO-A1KR-10A-01D-A141-01 f3b89642-6481-4413-9781-47a3f8e0887b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F04_778026.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-AO-A1KR TCGA-AO-A1KR-10A TCGA-AO-A1KR-10A-01D-A141-01 f3b89642-6481-4413-9781-47a3f8e0887b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F04_778026.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-AO-A1KR TCGA-AO-A1KR-10A TCGA-AO-A1KR-10A-01D-A141-01 f3b89642-6481-4413-9781-47a3f8e0887b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F04_778026.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-AO-A1KR TCGA-AO-A1KR-10A TCGA-AO-A1KR-10A-01D-A141-01 f3b89642-6481-4413-9781-47a3f8e0887b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F04_778026.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-AO-A1KR TCGA-AO-A1KR-10A TCGA-AO-A1KR-10A-01D-A141-01 f3b89642-6481-4413-9781-47a3f8e0887b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F04_778026.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-AO-A1KR TCGA-AO-A1KR-10A TCGA-AO-A1KR-10A-01D-A141-01 f3b89642-6481-4413-9781-47a3f8e0887b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F04_778026.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-AO-A1KR TCGA-AO-A1KR-10A TCGA-AO-A1KR-10A-01D-A141-01 f3b89642-6481-4413-9781-47a3f8e0887b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F04_778026.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-AO-A1KR TCGA-AO-A1KR-10A TCGA-AO-A1KR-10A-01D-A142-09 de361418-e012-49b7-b32c-25ba92e5fd7c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-AO-A1KR TCGA-AO-A1KR-10A TCGA-AO-A1KR-10A-01W-A187-09 125fa20f-907b-4c13-b985-8515c1fee693 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-AO-A1KS TCGA-AO-A1KS-01A TCGA-AO-A1KS-01A-11D-A13I-02 e3e6485d-7d29-405f-89d7-8a77f96c2aa4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KS TCGA-AO-A1KS-01A TCGA-AO-A1KS-01A-11D-A13J-01 4f393818-bf59-495d-85cf-6ddf1571e717 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KS TCGA-AO-A1KS-01A TCGA-AO-A1KS-01A-11D-A13J-01 4f393818-bf59-495d-85cf-6ddf1571e717 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A04_771878.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-AO-A1KS TCGA-AO-A1KS-01A TCGA-AO-A1KS-01A-11D-A13J-01 4f393818-bf59-495d-85cf-6ddf1571e717 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A04_771878.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KS TCGA-AO-A1KS-01A TCGA-AO-A1KS-01A-11D-A13J-01 4f393818-bf59-495d-85cf-6ddf1571e717 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A04_771878.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KS TCGA-AO-A1KS-01A TCGA-AO-A1KS-01A-11D-A13J-01 4f393818-bf59-495d-85cf-6ddf1571e717 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A04_771878.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KS TCGA-AO-A1KS-01A TCGA-AO-A1KS-01A-11D-A13J-01 4f393818-bf59-495d-85cf-6ddf1571e717 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A04_771878.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KS TCGA-AO-A1KS-01A TCGA-AO-A1KS-01A-11D-A13J-01 4f393818-bf59-495d-85cf-6ddf1571e717 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A04_771878.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KS TCGA-AO-A1KS-01A TCGA-AO-A1KS-01A-11D-A13J-01 4f393818-bf59-495d-85cf-6ddf1571e717 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A04_771878.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KS TCGA-AO-A1KS-01A TCGA-AO-A1KS-01A-11D-A13J-01 4f393818-bf59-495d-85cf-6ddf1571e717 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A04_771878.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-AO-A1KS TCGA-AO-A1KS-01A TCGA-AO-A1KS-01A-11D-A13K-05 92a2274a-cb5b-41d0-b975-c0d05a6383de Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KS TCGA-AO-A1KS-01A TCGA-AO-A1KS-01A-11D-A13K-05 92a2274a-cb5b-41d0-b975-c0d05a6383de DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818108_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-AO-A1KS TCGA-AO-A1KS-01A TCGA-AO-A1KS-01A-11D-A13K-05 92a2274a-cb5b-41d0-b975-c0d05a6383de DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818108_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-AO-A1KS TCGA-AO-A1KS-01A TCGA-AO-A1KS-01A-11D-A13K-05 92a2274a-cb5b-41d0-b975-c0d05a6383de DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-AO-A1KS-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-AO-A1KS TCGA-AO-A1KS-01A TCGA-AO-A1KS-01A-11D-A13K-05 92a2274a-cb5b-41d0-b975-c0d05a6383de DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-AO-A1KS-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-AO-A1KS TCGA-AO-A1KS-01A TCGA-AO-A1KS-01A-11D-A13L-09 21074661-4b0f-4adc-b406-5801688a3ae9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KS TCGA-AO-A1KS-01A TCGA-AO-A1KS-01A-11R-A13P-13 f6851fe9-2d94-4454-b49b-0d6e921f5b31 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KS TCGA-AO-A1KS-01A TCGA-AO-A1KS-01A-11R-A13P-13 f6851fe9-2d94-4454-b49b-0d6e921f5b31 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AO-A1KS-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-AO-A1KS TCGA-AO-A1KS-01A TCGA-AO-A1KS-01A-11R-A13P-13 f6851fe9-2d94-4454-b49b-0d6e921f5b31 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AO-A1KS-01A-11R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-AO-A1KS TCGA-AO-A1KS-01A TCGA-AO-A1KS-01A-11R-A13Q-07 9eab0553-20cc-41bb-bcdb-9ade0578da82 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KS TCGA-AO-A1KS-01A TCGA-AO-A1KS-01A-11R-A13Q-07 9eab0553-20cc-41bb-bcdb-9ade0578da82 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_509905.TCGA-AO-A1KS-01A-11R-A13Q-07.110901_UNC12-SN629_0126_AD0DG0ABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A1KS TCGA-AO-A1KS-01A TCGA-AO-A1KS-01A-11R-A13Q-07 9eab0553-20cc-41bb-bcdb-9ade0578da82 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_509908.TCGA-AO-A1KS-01A-11R-A13Q-07.110901_UNC12-SN629_0126_AD0DG0ABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A1KS TCGA-AO-A1KS-01A TCGA-AO-A1KS-01A-11R-A13Q-07 9eab0553-20cc-41bb-bcdb-9ade0578da82 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_509935.TCGA-AO-A1KS-01A-11R-A13Q-07.110901_UNC12-SN629_0126_AD0DG0ABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A1KS TCGA-AO-A1KS-01A TCGA-AO-A1KS-01A-11W-A14Q-09 a2e280ee-4f30-466d-b371-681d467171b6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KS TCGA-AO-A1KS-10A TCGA-AO-A1KS-10A-01D-A13M-02 4bcfad5a-ff0d-488d-ae0d-a846afb0e5bd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KS TCGA-AO-A1KS-10A TCGA-AO-A1KS-10A-01D-A13N-01 835feed3-e87c-4da8-b692-48983f50cefd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KS TCGA-AO-A1KS-10A TCGA-AO-A1KS-10A-01D-A13N-01 835feed3-e87c-4da8-b692-48983f50cefd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E04_771990.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-AO-A1KS TCGA-AO-A1KS-10A TCGA-AO-A1KS-10A-01D-A13N-01 835feed3-e87c-4da8-b692-48983f50cefd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E04_771990.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KS TCGA-AO-A1KS-10A TCGA-AO-A1KS-10A-01D-A13N-01 835feed3-e87c-4da8-b692-48983f50cefd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E04_771990.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KS TCGA-AO-A1KS-10A TCGA-AO-A1KS-10A-01D-A13N-01 835feed3-e87c-4da8-b692-48983f50cefd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E04_771990.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KS TCGA-AO-A1KS-10A TCGA-AO-A1KS-10A-01D-A13N-01 835feed3-e87c-4da8-b692-48983f50cefd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E04_771990.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KS TCGA-AO-A1KS-10A TCGA-AO-A1KS-10A-01D-A13N-01 835feed3-e87c-4da8-b692-48983f50cefd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E04_771990.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KS TCGA-AO-A1KS-10A TCGA-AO-A1KS-10A-01D-A13N-01 835feed3-e87c-4da8-b692-48983f50cefd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E04_771990.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KS TCGA-AO-A1KS-10A TCGA-AO-A1KS-10A-01D-A13N-01 835feed3-e87c-4da8-b692-48983f50cefd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E04_771990.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-AO-A1KS TCGA-AO-A1KS-10A TCGA-AO-A1KS-10A-01D-A13O-09 efc18480-a67c-4c40-8c1d-eade73a97d2d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KS TCGA-AO-A1KS-10A TCGA-AO-A1KS-10A-01D-A17G-09 a24de9c4-5cfc-41ed-843d-f91bd57b33fb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KS TCGA-AO-A1KS-10A TCGA-AO-A1KS-10A-01W-A14R-09 460a9133-a189-42d2-acf0-ae61ca265d76 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KT TCGA-AO-A1KT-01A TCGA-AO-A1KT-01A-11D-A13I-02 5aa07a64-77d5-47ca-9534-37456ae6aa7d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KT TCGA-AO-A1KT-01A TCGA-AO-A1KT-01A-11D-A13J-01 b93dd87f-11db-4cd2-8051-32251eace393 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KT TCGA-AO-A1KT-01A TCGA-AO-A1KT-01A-11D-A13J-01 b93dd87f-11db-4cd2-8051-32251eace393 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C06_771934.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-AO-A1KT TCGA-AO-A1KT-01A TCGA-AO-A1KT-01A-11D-A13J-01 b93dd87f-11db-4cd2-8051-32251eace393 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C06_771934.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KT TCGA-AO-A1KT-01A TCGA-AO-A1KT-01A-11D-A13J-01 b93dd87f-11db-4cd2-8051-32251eace393 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C06_771934.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KT TCGA-AO-A1KT-01A TCGA-AO-A1KT-01A-11D-A13J-01 b93dd87f-11db-4cd2-8051-32251eace393 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C06_771934.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KT TCGA-AO-A1KT-01A TCGA-AO-A1KT-01A-11D-A13J-01 b93dd87f-11db-4cd2-8051-32251eace393 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C06_771934.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KT TCGA-AO-A1KT-01A TCGA-AO-A1KT-01A-11D-A13J-01 b93dd87f-11db-4cd2-8051-32251eace393 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C06_771934.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KT TCGA-AO-A1KT-01A TCGA-AO-A1KT-01A-11D-A13J-01 b93dd87f-11db-4cd2-8051-32251eace393 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C06_771934.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KT TCGA-AO-A1KT-01A TCGA-AO-A1KT-01A-11D-A13J-01 b93dd87f-11db-4cd2-8051-32251eace393 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C06_771934.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-AO-A1KT TCGA-AO-A1KT-01A TCGA-AO-A1KT-01A-11D-A13K-05 96068935-c2cb-4f80-b43a-41855c7c9b7b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KT TCGA-AO-A1KT-01A TCGA-AO-A1KT-01A-11D-A13K-05 96068935-c2cb-4f80-b43a-41855c7c9b7b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818139_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-AO-A1KT TCGA-AO-A1KT-01A TCGA-AO-A1KT-01A-11D-A13K-05 96068935-c2cb-4f80-b43a-41855c7c9b7b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818139_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-AO-A1KT TCGA-AO-A1KT-01A TCGA-AO-A1KT-01A-11D-A13K-05 96068935-c2cb-4f80-b43a-41855c7c9b7b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-AO-A1KT-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-AO-A1KT TCGA-AO-A1KT-01A TCGA-AO-A1KT-01A-11D-A13K-05 96068935-c2cb-4f80-b43a-41855c7c9b7b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-AO-A1KT-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-AO-A1KT TCGA-AO-A1KT-01A TCGA-AO-A1KT-01A-11D-A13L-09 97b33dc3-6a62-419a-aa6c-cb84c9f92102 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KT TCGA-AO-A1KT-01A TCGA-AO-A1KT-01A-11R-A13P-13 820c2ca9-911e-43c8-a18d-407da2950f9d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KT TCGA-AO-A1KT-01A TCGA-AO-A1KT-01A-11R-A13P-13 820c2ca9-911e-43c8-a18d-407da2950f9d miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AO-A1KT-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-AO-A1KT TCGA-AO-A1KT-01A TCGA-AO-A1KT-01A-11R-A13P-13 820c2ca9-911e-43c8-a18d-407da2950f9d miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AO-A1KT-01A-11R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-AO-A1KT TCGA-AO-A1KT-01A TCGA-AO-A1KT-01A-11R-A13Q-07 82140d3a-0787-4e1e-993d-1b222c073cf8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KT TCGA-AO-A1KT-01A TCGA-AO-A1KT-01A-11R-A13Q-07 82140d3a-0787-4e1e-993d-1b222c073cf8 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_401725.TCGA-AO-A1KT-01A-11R-A13Q-07.110729_UNC15-SN850_0102_BD0E5DABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A1KT TCGA-AO-A1KT-01A TCGA-AO-A1KT-01A-11R-A13Q-07 82140d3a-0787-4e1e-993d-1b222c073cf8 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_401754.TCGA-AO-A1KT-01A-11R-A13Q-07.110729_UNC15-SN850_0102_BD0E5DABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A1KT TCGA-AO-A1KT-01A TCGA-AO-A1KT-01A-11R-A13Q-07 82140d3a-0787-4e1e-993d-1b222c073cf8 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_401796.TCGA-AO-A1KT-01A-11R-A13Q-07.110729_UNC15-SN850_0102_BD0E5DABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-AO-A1KT TCGA-AO-A1KT-01A TCGA-AO-A1KT-01A-11W-A14Q-09 092029f2-5aac-4143-ae45-729008a66c0f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KT TCGA-AO-A1KT-10A TCGA-AO-A1KT-10A-01D-A13M-02 34323b40-1f98-4968-815a-44fc32e0c0d7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KT TCGA-AO-A1KT-10A TCGA-AO-A1KT-10A-01D-A13N-01 3fbfe700-545a-46d9-85fe-78acd9b73d2c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KT TCGA-AO-A1KT-10A TCGA-AO-A1KT-10A-01D-A13N-01 3fbfe700-545a-46d9-85fe-78acd9b73d2c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E09_772018.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-AO-A1KT TCGA-AO-A1KT-10A TCGA-AO-A1KT-10A-01D-A13N-01 3fbfe700-545a-46d9-85fe-78acd9b73d2c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E09_772018.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KT TCGA-AO-A1KT-10A TCGA-AO-A1KT-10A-01D-A13N-01 3fbfe700-545a-46d9-85fe-78acd9b73d2c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E09_772018.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KT TCGA-AO-A1KT-10A TCGA-AO-A1KT-10A-01D-A13N-01 3fbfe700-545a-46d9-85fe-78acd9b73d2c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E09_772018.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KT TCGA-AO-A1KT-10A TCGA-AO-A1KT-10A-01D-A13N-01 3fbfe700-545a-46d9-85fe-78acd9b73d2c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E09_772018.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KT TCGA-AO-A1KT-10A TCGA-AO-A1KT-10A-01D-A13N-01 3fbfe700-545a-46d9-85fe-78acd9b73d2c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E09_772018.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KT TCGA-AO-A1KT-10A TCGA-AO-A1KT-10A-01D-A13N-01 3fbfe700-545a-46d9-85fe-78acd9b73d2c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E09_772018.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AO-A1KT TCGA-AO-A1KT-10A TCGA-AO-A1KT-10A-01D-A13N-01 3fbfe700-545a-46d9-85fe-78acd9b73d2c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E09_772018.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-AO-A1KT TCGA-AO-A1KT-10A TCGA-AO-A1KT-10A-01D-A13O-09 4c643c9c-a912-4305-85d3-337df9aacbe5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KT TCGA-AO-A1KT-10A TCGA-AO-A1KT-10A-01D-A188-09 f5386f22-b79a-48ba-b98d-8110ae94009b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AO-A1KT TCGA-AO-A1KT-10A TCGA-AO-A1KT-10A-01W-A14R-09 fa1082a0-1ddc-4f35-87ea-e6290733e21c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AO-A1KT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11D-A10K-02 bec2eb0a-f9e0-42bc-828b-7118458edbc2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11D-A10L-01 965e2ec0-0a64-4ad1-a201-97cdf65dcb39 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11D-A10L-01 965e2ec0-0a64-4ad1-a201-97cdf65dcb39 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G01_734780.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11D-A10L-01 965e2ec0-0a64-4ad1-a201-97cdf65dcb39 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G01_734780.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11D-A10L-01 965e2ec0-0a64-4ad1-a201-97cdf65dcb39 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G01_734780.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11D-A10L-01 965e2ec0-0a64-4ad1-a201-97cdf65dcb39 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G01_734780.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11D-A10L-01 965e2ec0-0a64-4ad1-a201-97cdf65dcb39 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G01_734780.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11D-A10L-01 965e2ec0-0a64-4ad1-a201-97cdf65dcb39 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G01_734780.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11D-A10L-01 965e2ec0-0a64-4ad1-a201-97cdf65dcb39 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G01_734780.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11D-A10L-01 965e2ec0-0a64-4ad1-a201-97cdf65dcb39 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G01_734780.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11D-A10M-09 73c13e04-1400-4ebb-aa80-f54becbe036c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11D-A10M-09 73c13e04-1400-4ebb-aa80-f54becbe036c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11D-A10N-05 f128dc98-0e31-40cf-aa7b-72ba94f855c3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11D-A10N-05 f128dc98-0e31-40cf-aa7b-72ba94f855c3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486012_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11D-A10N-05 f128dc98-0e31-40cf-aa7b-72ba94f855c3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486012_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11D-A10N-05 f128dc98-0e31-40cf-aa7b-72ba94f855c3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-AQ-A04H-01B-11D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11D-A10N-05 f128dc98-0e31-40cf-aa7b-72ba94f855c3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-AQ-A04H-01B-11D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11R-A10I-13 a447b599-9ecb-4b9e-a369-2d63e304c4b5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11R-A10I-13 a447b599-9ecb-4b9e-a369-2d63e304c4b5 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AQ-A04H-01B-11R-A10I-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11R-A10I-13 a447b599-9ecb-4b9e-a369-2d63e304c4b5 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AQ-A04H-01B-11R-A10I-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11R-A10J-07 bcd8ae7a-cd43-4781-9ce3-8c87b92dd69d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11R-A10J-07 bcd8ae7a-cd43-4781-9ce3-8c87b92dd69d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012704_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11R-A10J-07 bcd8ae7a-cd43-4781-9ce3-8c87b92dd69d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012704_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11R-A10J-07 bcd8ae7a-cd43-4781-9ce3-8c87b92dd69d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012704_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11R-A10J-07 bcd8ae7a-cd43-4781-9ce3-8c87b92dd69d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442726.TCGA-AQ-A04H-01B-11R-A10J-07.110509_UNC14-SN744_0110_AC02MVABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11R-A10J-07 bcd8ae7a-cd43-4781-9ce3-8c87b92dd69d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442745.TCGA-AQ-A04H-01B-11R-A10J-07.110509_UNC14-SN744_0110_AC02MVABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11R-A10J-07 bcd8ae7a-cd43-4781-9ce3-8c87b92dd69d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442758.TCGA-AQ-A04H-01B-11R-A10J-07.110509_UNC14-SN744_0110_AC02MVABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-01B TCGA-AQ-A04H-01B-11W-A124-09 45497e64-a561-47bb-9117-291e5f72dc85 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-10A TCGA-AQ-A04H-10A-01D-A10K-02 1bab8502-a6f8-4db0-a3ff-5314046a50da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-10A TCGA-AQ-A04H-10A-01D-A10L-01 440c8dca-5e77-4934-8dbb-f49d0a4da495 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-10A TCGA-AQ-A04H-10A-01D-A10L-01 440c8dca-5e77-4934-8dbb-f49d0a4da495 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G02_734792.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AQ-A04H TCGA-AQ-A04H-10A TCGA-AQ-A04H-10A-01D-A10L-01 440c8dca-5e77-4934-8dbb-f49d0a4da495 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G02_734792.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-10A TCGA-AQ-A04H-10A-01D-A10L-01 440c8dca-5e77-4934-8dbb-f49d0a4da495 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G02_734792.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-10A TCGA-AQ-A04H-10A-01D-A10L-01 440c8dca-5e77-4934-8dbb-f49d0a4da495 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G02_734792.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-10A TCGA-AQ-A04H-10A-01D-A10L-01 440c8dca-5e77-4934-8dbb-f49d0a4da495 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G02_734792.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-10A TCGA-AQ-A04H-10A-01D-A10L-01 440c8dca-5e77-4934-8dbb-f49d0a4da495 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G02_734792.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-10A TCGA-AQ-A04H-10A-01D-A10L-01 440c8dca-5e77-4934-8dbb-f49d0a4da495 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G02_734792.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-10A TCGA-AQ-A04H-10A-01D-A10L-01 440c8dca-5e77-4934-8dbb-f49d0a4da495 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G02_734792.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-10A TCGA-AQ-A04H-10A-01D-A10M-09 751944ed-705b-43b8-99fc-a49a6514941d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-10A TCGA-AQ-A04H-10A-01D-A10M-09 751944ed-705b-43b8-99fc-a49a6514941d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-AQ-A04H TCGA-AQ-A04H-10A TCGA-AQ-A04H-10A-01W-A124-09 8957b3f2-98aa-4832-8d2c-27f658fe7a24 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02D-A032-05 fc759e10-fc46-4e2b-b764-db11198d94a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02D-A032-05 fc759e10-fc46-4e2b-b764-db11198d94a1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-AQ-A04J-01A-02D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02D-A032-05 fc759e10-fc46-4e2b-b764-db11198d94a1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-AQ-A04J-01A-02D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02D-A032-05 fc759e10-fc46-4e2b-b764-db11198d94a1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-AQ-A04J-01A-02D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02D-A033-02 80f7f278-976d-4db9-b7b6-e7e2d07076f1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02D-A036-01 57b92480-0f4d-436d-b6f0-1d01a2d6ce21 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02D-A036-01 57b92480-0f4d-436d-b6f0-1d01a2d6ce21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C01_667192.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02D-A036-01 57b92480-0f4d-436d-b6f0-1d01a2d6ce21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C01_667192.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02D-A036-01 57b92480-0f4d-436d-b6f0-1d01a2d6ce21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C01_667192.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02D-A036-01 57b92480-0f4d-436d-b6f0-1d01a2d6ce21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C01_667192.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02D-A036-01 57b92480-0f4d-436d-b6f0-1d01a2d6ce21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C01_667192.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02D-A036-01 57b92480-0f4d-436d-b6f0-1d01a2d6ce21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C01_667192.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02D-A036-01 57b92480-0f4d-436d-b6f0-1d01a2d6ce21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C01_667192.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02D-A036-01 57b92480-0f4d-436d-b6f0-1d01a2d6ce21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C01_667192.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02D-A044-08 e6222e61-a767-4d79-9add-b92a8be0d0f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02D-A045-09 101f0243-ae2e-439d-99b2-2720bd08e12f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02D-A128-09 467ef778-f481-44f3-9768-b9900252d2ba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02R-A034-07 97168a1f-abf8-414b-af10-b63f5daa7023 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02R-A034-07 97168a1f-abf8-414b-af10-b63f5daa7023 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012065_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02R-A034-07 97168a1f-abf8-414b-af10-b63f5daa7023 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012065_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02R-A034-07 97168a1f-abf8-414b-af10-b63f5daa7023 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012065_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02R-A034-07 97168a1f-abf8-414b-af10-b63f5daa7023 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_609513.TCGA-AQ-A04J-01A-02R-A034-07.110218_UNC12-SN629_0062_B81DEHABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02R-A034-07 97168a1f-abf8-414b-af10-b63f5daa7023 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_609554.TCGA-AQ-A04J-01A-02R-A034-07.110218_UNC12-SN629_0062_B81DEHABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02R-A034-07 97168a1f-abf8-414b-af10-b63f5daa7023 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_609730.TCGA-AQ-A04J-01A-02R-A034-07.110218_UNC12-SN629_0062_B81DEHABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02R-A035-13 5a8d46b7-3770-4158-8f6b-c808e4e89f84 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02R-A035-13 5a8d46b7-3770-4158-8f6b-c808e4e89f84 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AQ-A04J-01A-02R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02R-A035-13 5a8d46b7-3770-4158-8f6b-c808e4e89f84 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AQ-A04J-01A-02R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02W-A050-09 cce21f2b-784b-4fa0-9809-ae532c528f8e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02W-A050-09 cce21f2b-784b-4fa0-9809-ae532c528f8e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02W-A051-08 211b4dd3-df0a-4673-bf9a-36c74ab656bc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02X-A048-08 99478bda-5f24-42e9-9b23-f9ed8aa62a04 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-01A TCGA-AQ-A04J-01A-02X-A049-09 b16305c1-4593-4a4b-8616-5645797e403d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-10A TCGA-AQ-A04J-10A-01D-A031-02 f6f996e3-fb17-424a-b493-af66e54d79da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-10A TCGA-AQ-A04J-10A-01D-A037-01 4243f6a9-288e-48e9-95f1-b5ce412bfe86 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-10A TCGA-AQ-A04J-10A-01D-A037-01 4243f6a9-288e-48e9-95f1-b5ce412bfe86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H08_667182.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-AQ-A04J TCGA-AQ-A04J-10A TCGA-AQ-A04J-10A-01D-A037-01 4243f6a9-288e-48e9-95f1-b5ce412bfe86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H08_667182.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-10A TCGA-AQ-A04J-10A-01D-A037-01 4243f6a9-288e-48e9-95f1-b5ce412bfe86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H08_667182.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-10A TCGA-AQ-A04J-10A-01D-A037-01 4243f6a9-288e-48e9-95f1-b5ce412bfe86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H08_667182.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-10A TCGA-AQ-A04J-10A-01D-A037-01 4243f6a9-288e-48e9-95f1-b5ce412bfe86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H08_667182.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-10A TCGA-AQ-A04J-10A-01D-A037-01 4243f6a9-288e-48e9-95f1-b5ce412bfe86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H08_667182.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-10A TCGA-AQ-A04J-10A-01D-A037-01 4243f6a9-288e-48e9-95f1-b5ce412bfe86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H08_667182.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-10A TCGA-AQ-A04J-10A-01D-A037-01 4243f6a9-288e-48e9-95f1-b5ce412bfe86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H08_667182.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-10A TCGA-AQ-A04J-10A-01D-A046-08 4b7dafe7-df23-4b8d-a802-4761a1161fa2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-10A TCGA-AQ-A04J-10A-01D-A047-09 70f4b708-6755-49fb-84b8-9d06f3cfe1d1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-10A TCGA-AQ-A04J-10A-01D-A128-09 5bf42cfb-bfe4-4666-9d7e-7d50500bdebd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-10A TCGA-AQ-A04J-10A-01W-A053-08 204f9159-d95e-4737-a40b-df88625a8bf2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-10A TCGA-AQ-A04J-10A-01W-A055-09 a53132c6-21f2-4083-9b0b-5e927d63e199 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-10A TCGA-AQ-A04J-10A-01W-A055-09 a53132c6-21f2-4083-9b0b-5e927d63e199 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-10A TCGA-AQ-A04J-10A-01X-A052-08 784f9221-b15c-4793-9629-6e37d3a84f33 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AQ-A04J TCGA-AQ-A04J-10A TCGA-AQ-A04J-10A-01X-A054-09 a277bb92-3169-45e7-b678-c654e0e1070c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21D-A10K-02 baf762b0-d795-4d9d-9a8d-33961be14f98 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21D-A10L-01 f77f1d25-be2a-4a1e-a262-f01482406c10 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21D-A10L-01 f77f1d25-be2a-4a1e-a262-f01482406c10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G03_734712.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21D-A10L-01 f77f1d25-be2a-4a1e-a262-f01482406c10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G03_734712.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21D-A10L-01 f77f1d25-be2a-4a1e-a262-f01482406c10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G03_734712.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21D-A10L-01 f77f1d25-be2a-4a1e-a262-f01482406c10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G03_734712.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21D-A10L-01 f77f1d25-be2a-4a1e-a262-f01482406c10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G03_734712.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21D-A10L-01 f77f1d25-be2a-4a1e-a262-f01482406c10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G03_734712.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21D-A10L-01 f77f1d25-be2a-4a1e-a262-f01482406c10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G03_734712.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21D-A10L-01 f77f1d25-be2a-4a1e-a262-f01482406c10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G03_734712.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21D-A10M-09 e8d7feb0-981b-4ba0-b4d4-fa985064444b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21D-A10M-09 e8d7feb0-981b-4ba0-b4d4-fa985064444b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21D-A10N-05 9a2b5869-b3a7-40fe-a969-ce573d885954 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21D-A10N-05 9a2b5869-b3a7-40fe-a969-ce573d885954 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486017_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21D-A10N-05 9a2b5869-b3a7-40fe-a969-ce573d885954 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486017_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21D-A10N-05 9a2b5869-b3a7-40fe-a969-ce573d885954 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-AQ-A04L-01B-21D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21D-A10N-05 9a2b5869-b3a7-40fe-a969-ce573d885954 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-AQ-A04L-01B-21D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21R-A10I-13 836fad52-d886-4617-a544-d7715d700075 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21R-A10I-13 836fad52-d886-4617-a544-d7715d700075 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AQ-A04L-01B-21R-A10I-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21R-A10I-13 836fad52-d886-4617-a544-d7715d700075 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AQ-A04L-01B-21R-A10I-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21R-A10J-07 1fa9c013-4d2c-4f3e-8e77-6437dad440c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21R-A10J-07 1fa9c013-4d2c-4f3e-8e77-6437dad440c9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012708_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21R-A10J-07 1fa9c013-4d2c-4f3e-8e77-6437dad440c9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012708_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21R-A10J-07 1fa9c013-4d2c-4f3e-8e77-6437dad440c9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012708_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21R-A10J-07 1fa9c013-4d2c-4f3e-8e77-6437dad440c9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_482014.TCGA-AQ-A04L-01B-21R-A10J-07.110725_UNC14-SN744_0149_BD0DUPABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21R-A10J-07 1fa9c013-4d2c-4f3e-8e77-6437dad440c9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_482035.TCGA-AQ-A04L-01B-21R-A10J-07.110725_UNC14-SN744_0149_BD0DUPABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21R-A10J-07 1fa9c013-4d2c-4f3e-8e77-6437dad440c9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_482078.TCGA-AQ-A04L-01B-21R-A10J-07.110725_UNC14-SN744_0149_BD0DUPABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-01B TCGA-AQ-A04L-01B-21W-A124-09 95c50e68-ebee-4a09-812e-cc15f6699746 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-10A TCGA-AQ-A04L-10A-01D-A10K-02 d1afd0bf-59b3-4ad1-8c8e-598e3553d3c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-10A TCGA-AQ-A04L-10A-01D-A10L-01 841ed49a-1a0f-4d89-a7d3-0cb51a611fa6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D09_734674.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D09_734674.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D09_734674.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D09_734674.ismpolish.data.txt'. TCGA-AQ-A04L TCGA-AQ-A04L-10A TCGA-AQ-A04L-10A-01D-A10L-01 841ed49a-1a0f-4d89-a7d3-0cb51a611fa6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D09_734674.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D09_734674.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D09_734674.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D09_734674.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D09_734674.ismpolish.data.txt'. TCGA-AQ-A04L TCGA-AQ-A04L-10A TCGA-AQ-A04L-10A-01D-A10L-01 841ed49a-1a0f-4d89-a7d3-0cb51a611fa6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D09_734674.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D09_734674.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D09_734674.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D09_734674.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_D09_734674.ismpolish.data.txt'. TCGA-AQ-A04L TCGA-AQ-A04L-10A TCGA-AQ-A04L-10A-01D-A10M-09 a73828ae-0081-42cf-b3cb-a190e7b7f17b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-10A TCGA-AQ-A04L-10A-01D-A12J-09 c2f7e5fb-0cff-43dd-959e-00f6b1d4b257 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-10A TCGA-AQ-A04L-10A-01D-A12J-09 c2f7e5fb-0cff-43dd-959e-00f6b1d4b257 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-AQ-A04L TCGA-AQ-A04L-10A TCGA-AQ-A04L-10A-01W-A124-09 828c9700-4155-4fc3-b0da-2ea8218900bb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A04L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-01A TCGA-AQ-A0Y5-01A-11D-A14I-02 19c97d7e-f36f-4103-a6d5-3abdfe7fbffd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A0Y5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-01A TCGA-AQ-A0Y5-01A-11D-A14J-01 80ffdd30-9845-4ee5-8f68-f272c0b0b1f5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A0Y5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-01A TCGA-AQ-A0Y5-01A-11D-A14J-01 80ffdd30-9845-4ee5-8f68-f272c0b0b1f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_B05_780804.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0 124 07-DEC-11 11.20.29.794000000 AM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-01A TCGA-AQ-A0Y5-01A-11D-A14J-01 80ffdd30-9845-4ee5-8f68-f272c0b0b1f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_B05_780804.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-01A TCGA-AQ-A0Y5-01A-11D-A14J-01 80ffdd30-9845-4ee5-8f68-f272c0b0b1f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_B05_780804.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-01A TCGA-AQ-A0Y5-01A-11D-A14J-01 80ffdd30-9845-4ee5-8f68-f272c0b0b1f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_B05_780804.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-01A TCGA-AQ-A0Y5-01A-11D-A14J-01 80ffdd30-9845-4ee5-8f68-f272c0b0b1f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_B05_780804.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-01A TCGA-AQ-A0Y5-01A-11D-A14J-01 80ffdd30-9845-4ee5-8f68-f272c0b0b1f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_B05_780804.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-01A TCGA-AQ-A0Y5-01A-11D-A14J-01 80ffdd30-9845-4ee5-8f68-f272c0b0b1f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_B05_780804.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-01A TCGA-AQ-A0Y5-01A-11D-A14J-01 80ffdd30-9845-4ee5-8f68-f272c0b0b1f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_B05_780804.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0 124 07-DEC-11 01.00.01.995000000 PM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-01A TCGA-AQ-A0Y5-01A-11D-A14K-09 4aa80fbd-a337-49b6-9371-223cbcfbc85d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A0Y5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-01A TCGA-AQ-A0Y5-01A-11D-A14N-05 ae23139d-a082-4a66-8892-c69fee9905cd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A0Y5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-01A TCGA-AQ-A0Y5-01A-11D-A14N-05 ae23139d-a082-4a66-8892-c69fee9905cd DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.12.1.0/6042316100_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.12.1.0 124 07-NOV-11 04.11.38.706000000 PM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-01A TCGA-AQ-A0Y5-01A-11D-A14N-05 ae23139d-a082-4a66-8892-c69fee9905cd DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.12.1.0/6042316100_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.12.1.0 124 07-NOV-11 04.11.38.706000000 PM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-01A TCGA-AQ-A0Y5-01A-11D-A14N-05 ae23139d-a082-4a66-8892-c69fee9905cd DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A0Y5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-01A TCGA-AQ-A0Y5-01A-11R-A14L-13 aefdb658-a85d-4323-addd-6a5d068055ce miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AQ-A0Y5-01A-11R-A14L-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 124 31-OCT-11 10.17.59.939000000 PM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-01A TCGA-AQ-A0Y5-01A-11R-A14L-13 aefdb658-a85d-4323-addd-6a5d068055ce miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A0Y5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-10A TCGA-AQ-A0Y5-10A-01D-A14J-01 693b76d0-2aff-41b8-bde4-50912ce8596a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A0Y5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-10A TCGA-AQ-A0Y5-10A-01D-A14J-01 693b76d0-2aff-41b8-bde4-50912ce8596a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A01_780784.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0 124 07-DEC-11 11.20.29.794000000 AM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-10A TCGA-AQ-A0Y5-10A-01D-A14J-01 693b76d0-2aff-41b8-bde4-50912ce8596a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A01_780784.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-10A TCGA-AQ-A0Y5-10A-01D-A14J-01 693b76d0-2aff-41b8-bde4-50912ce8596a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A01_780784.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-10A TCGA-AQ-A0Y5-10A-01D-A14J-01 693b76d0-2aff-41b8-bde4-50912ce8596a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A01_780784.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-10A TCGA-AQ-A0Y5-10A-01D-A14J-01 693b76d0-2aff-41b8-bde4-50912ce8596a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A01_780784.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-10A TCGA-AQ-A0Y5-10A-01D-A14J-01 693b76d0-2aff-41b8-bde4-50912ce8596a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A01_780784.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-10A TCGA-AQ-A0Y5-10A-01D-A14J-01 693b76d0-2aff-41b8-bde4-50912ce8596a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A01_780784.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-10A TCGA-AQ-A0Y5-10A-01D-A14J-01 693b76d0-2aff-41b8-bde4-50912ce8596a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A01_780784.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0 124 07-DEC-11 01.00.01.995000000 PM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-10A TCGA-AQ-A0Y5-10A-01D-A14K-09 da27b985-5ce0-43cf-8f6e-8b5dfd5fc578 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A0Y5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-10A TCGA-AQ-A0Y5-10A-01D-A17G-09 d116ee66-1d8f-4319-b8d6-be4213550093 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A0Y5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-AQ-A0Y5 TCGA-AQ-A0Y5-10A TCGA-AQ-A0Y5-10A-01W-A16I-09 7b887cf3-301b-46d2-9be8-c8534a60c083 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A0Y5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-AQ-A1H2 TCGA-AQ-A1H2-01A TCGA-AQ-A1H2-01A-11D-A13I-02 2adcca8e-aab5-405a-849a-addab361d21d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A1H2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AQ-A1H2 TCGA-AQ-A1H2-01A TCGA-AQ-A1H2-01A-11D-A13J-01 fd45dc6f-bce7-4005-b1e7-be2b2b7dbbca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-AQ-A1H2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-AQ-A1H2 TCGA-AQ-A1H2-01A TCGA-AQ-A1H2-01A-11D-A13J-01 fd45dc6f-bce7-4005-b1e7-be2b2b7dbbca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F03_771916.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-AQ-A1H2 TCGA-AQ-A1H2-01A TCGA-AQ-A1H2-01A-11D-A13J-01 fd45dc6f-bce7-4005-b1e7-be2b2b7dbbca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F03_771916.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AQ-A1H2 TCGA-AQ-A1H2-01A TCGA-AQ-A1H2-01A-11D-A13J-01 fd45dc6f-bce7-4005-b1e7-be2b2b7dbbca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F03_771916.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AQ-A1H2 TCGA-AQ-A1H2-01A TCGA-AQ-A1H2-01A-11D-A13J-01 fd45dc6f-bce7-4005-b1e7-be2b2b7dbbca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F03_771916.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AQ-A1H2 TCGA-AQ-A1H2-01A TCGA-AQ-A1H2-01A-11D-A13J-01 fd45dc6f-bce7-4005-b1e7-be2b2b7dbbca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F03_771916.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-AQ-A1H2 TCGA-AQ-A1H2-01A TCGA-AQ-A1H2-01A-11D-A13J-01 fd45dc6f-bce7-4005-b1e7-be2b2b7dbbca SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-01A TCGA-AR-A0TP-01A-11D-A087-01 17e54aa6-f5d6-437a-8345-d40805c86430 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-01A TCGA-AR-A0TP-01A-11D-A087-01 17e54aa6-f5d6-437a-8345-d40805c86430 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A06_698104.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-AR-A0TP TCGA-AR-A0TP-01A TCGA-AR-A0TP-01A-11D-A087-01 17e54aa6-f5d6-437a-8345-d40805c86430 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A06_698104.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-01A TCGA-AR-A0TP-01A-11D-A087-01 17e54aa6-f5d6-437a-8345-d40805c86430 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A06_698104.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-01A TCGA-AR-A0TP-01A-11D-A087-01 17e54aa6-f5d6-437a-8345-d40805c86430 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A06_698104.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-01A TCGA-AR-A0TP-01A-11D-A087-01 17e54aa6-f5d6-437a-8345-d40805c86430 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A06_698104.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-01A TCGA-AR-A0TP-01A-11D-A087-01 17e54aa6-f5d6-437a-8345-d40805c86430 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A06_698104.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-01A TCGA-AR-A0TP-01A-11D-A087-01 17e54aa6-f5d6-437a-8345-d40805c86430 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A06_698104.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-01A TCGA-AR-A0TP-01A-11D-A087-01 17e54aa6-f5d6-437a-8345-d40805c86430 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A06_698104.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-01A TCGA-AR-A0TP-01A-11D-A088-05 f5463b1d-137a-477c-828b-869239b26d17 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-01A TCGA-AR-A0TP-01A-11D-A099-09 bee5b9c8-739e-4530-b140-cd2b898d7afd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-01A TCGA-AR-A0TP-01A-11D-A099-09 bee5b9c8-739e-4530-b140-cd2b898d7afd Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-01A TCGA-AR-A0TP-01A-11D-A099-09 bee5b9c8-739e-4530-b140-cd2b898d7afd Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-01A TCGA-AR-A0TP-01A-11D-A10P-05 7d84c703-21f3-4eff-aa6e-93b458940738 Complete Clinical Set bio 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1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-01A TCGA-AR-A0TP-01A-11D-A10P-05 7d84c703-21f3-4eff-aa6e-93b458940738 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-AR-A0TP-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-01A TCGA-AR-A0TP-01A-11D-A10P-05 7d84c703-21f3-4eff-aa6e-93b458940738 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-AR-A0TP-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-01A TCGA-AR-A0TP-01A-11R-A084-07 f9739b94-ac64-40d5-bfdd-041a412976c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-01A TCGA-AR-A0TP-01A-11R-A084-07 f9739b94-ac64-40d5-bfdd-041a412976c4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012633_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-AR-A0TP TCGA-AR-A0TP-01A TCGA-AR-A0TP-01A-11R-A084-07 f9739b94-ac64-40d5-bfdd-041a412976c4 Expression-Genes AgilentG4502A_07_3 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-01A TCGA-AR-A0TP-01A-11X-A098-09 feee62fd-dcf9-4033-a996-0dbb9c6ef89f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-10A TCGA-AR-A0TP-10A-01D-A086-02 2f282fde-de38-4df0-bfad-5b0937158385 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-10A TCGA-AR-A0TP-10A-01D-A087-01 81dd5665-da08-458b-b2b8-157aef735201 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-10A TCGA-AR-A0TP-10A-01D-A087-01 81dd5665-da08-458b-b2b8-157aef735201 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A08_698026.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-AR-A0TP TCGA-AR-A0TP-10A TCGA-AR-A0TP-10A-01D-A087-01 81dd5665-da08-458b-b2b8-157aef735201 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A08_698026.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-10A TCGA-AR-A0TP-10A-01D-A087-01 81dd5665-da08-458b-b2b8-157aef735201 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A08_698026.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-10A TCGA-AR-A0TP-10A-01D-A087-01 81dd5665-da08-458b-b2b8-157aef735201 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A08_698026.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-10A TCGA-AR-A0TP-10A-01D-A087-01 81dd5665-da08-458b-b2b8-157aef735201 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A08_698026.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-10A TCGA-AR-A0TP-10A-01D-A087-01 81dd5665-da08-458b-b2b8-157aef735201 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A08_698026.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-10A TCGA-AR-A0TP-10A-01D-A087-01 81dd5665-da08-458b-b2b8-157aef735201 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A08_698026.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-10A TCGA-AR-A0TP-10A-01D-A087-01 81dd5665-da08-458b-b2b8-157aef735201 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A08_698026.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-10A TCGA-AR-A0TP-10A-01D-A099-09 b95ee272-a889-47da-8366-353b57fb93b8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-10A TCGA-AR-A0TP-10A-01D-A099-09 b95ee272-a889-47da-8366-353b57fb93b8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-10A TCGA-AR-A0TP-10A-01D-A099-09 b95ee272-a889-47da-8366-353b57fb93b8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-10A TCGA-AR-A0TP-10A-01W-A097-09 acc7e87d-2331-4091-94de-29b5a7eaf711 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TP TCGA-AR-A0TP-10A TCGA-AR-A0TP-10A-01X-A098-09 1360096e-b731-4cbe-a5e4-e91348e8e916 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TQ TCGA-AR-A0TQ-01A TCGA-AR-A0TQ-01A-11D-A086-02 df5c525d-0bfd-4e8e-b5e1-a5149cff7c83 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TQ TCGA-AR-A0TQ-01A TCGA-AR-A0TQ-01A-11D-A087-01 5d48d86f-703e-4390-a86f-c48426aa290f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TQ TCGA-AR-A0TQ-01A TCGA-AR-A0TQ-01A-11D-A087-01 5d48d86f-703e-4390-a86f-c48426aa290f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C05_698132.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-AR-A0TQ TCGA-AR-A0TQ-01A TCGA-AR-A0TQ-01A-11D-A087-01 5d48d86f-703e-4390-a86f-c48426aa290f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C05_698132.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TQ TCGA-AR-A0TQ-01A TCGA-AR-A0TQ-01A-11D-A087-01 5d48d86f-703e-4390-a86f-c48426aa290f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C05_698132.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TQ TCGA-AR-A0TQ-01A TCGA-AR-A0TQ-01A-11D-A087-01 5d48d86f-703e-4390-a86f-c48426aa290f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C05_698132.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TQ TCGA-AR-A0TQ-01A TCGA-AR-A0TQ-01A-11D-A087-01 5d48d86f-703e-4390-a86f-c48426aa290f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C05_698132.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TQ TCGA-AR-A0TQ-01A TCGA-AR-A0TQ-01A-11D-A087-01 5d48d86f-703e-4390-a86f-c48426aa290f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C05_698132.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TQ TCGA-AR-A0TQ-01A TCGA-AR-A0TQ-01A-11D-A087-01 5d48d86f-703e-4390-a86f-c48426aa290f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C05_698132.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TQ TCGA-AR-A0TQ-01A TCGA-AR-A0TQ-01A-11D-A087-01 5d48d86f-703e-4390-a86f-c48426aa290f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C05_698132.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-AR-A0TQ TCGA-AR-A0TQ-01A TCGA-AR-A0TQ-01A-11D-A088-05 e60b1310-0e8f-4634-bbca-0e14d8bcf2e8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TQ TCGA-AR-A0TQ-01A TCGA-AR-A0TQ-01A-11D-A099-09 b266fffc-263d-4b0f-a781-7437e41061b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TQ TCGA-AR-A0TQ-01A TCGA-AR-A0TQ-01A-11D-A099-09 b266fffc-263d-4b0f-a781-7437e41061b2 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0TQ TCGA-AR-A0TQ-01A TCGA-AR-A0TQ-01A-11D-A10P-05 9a284b81-469a-4919-ac0e-3d19fea3d39d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TQ TCGA-AR-A0TQ-01A TCGA-AR-A0TQ-01A-11D-A10P-05 9a284b81-469a-4919-ac0e-3d19fea3d39d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791006_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-AR-A0TQ TCGA-AR-A0TQ-01A TCGA-AR-A0TQ-01A-11D-A10P-05 9a284b81-469a-4919-ac0e-3d19fea3d39d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791006_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-AR-A0TQ TCGA-AR-A0TQ-01A TCGA-AR-A0TQ-01A-11D-A10P-05 9a284b81-469a-4919-ac0e-3d19fea3d39d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-AR-A0TQ-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-AR-A0TQ TCGA-AR-A0TQ-01A TCGA-AR-A0TQ-01A-11D-A10P-05 9a284b81-469a-4919-ac0e-3d19fea3d39d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-AR-A0TQ-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-AR-A0TQ TCGA-AR-A0TQ-01A TCGA-AR-A0TQ-01A-11R-A084-07 7c7b9232-aadf-476f-b9c7-2fdd67efe1e7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TQ TCGA-AR-A0TQ-01A TCGA-AR-A0TQ-01A-11R-A084-07 7c7b9232-aadf-476f-b9c7-2fdd67efe1e7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012588_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-AR-A0TQ TCGA-AR-A0TQ-01A TCGA-AR-A0TQ-01A-11R-A084-07 7c7b9232-aadf-476f-b9c7-2fdd67efe1e7 Expression-Genes AgilentG4502A_07_3 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1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TQ TCGA-AR-A0TQ-10A TCGA-AR-A0TQ-10A-01D-A087-01 d97c7d70-8eb8-4793-b408-8e49fe98e05a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TQ TCGA-AR-A0TQ-10A TCGA-AR-A0TQ-10A-01D-A087-01 d97c7d70-8eb8-4793-b408-8e49fe98e05a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H06_697992.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-AR-A0TQ TCGA-AR-A0TQ-10A TCGA-AR-A0TQ-10A-01D-A087-01 d97c7d70-8eb8-4793-b408-8e49fe98e05a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H06_697992.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TQ TCGA-AR-A0TQ-10A TCGA-AR-A0TQ-10A-01D-A087-01 d97c7d70-8eb8-4793-b408-8e49fe98e05a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H06_697992.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TQ TCGA-AR-A0TQ-10A TCGA-AR-A0TQ-10A-01D-A087-01 d97c7d70-8eb8-4793-b408-8e49fe98e05a SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H06_697992.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-AR-A0TQ TCGA-AR-A0TQ-10A TCGA-AR-A0TQ-10A-01D-A099-09 03e145ae-8680-4297-bb3f-0553fb6ce01d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TQ TCGA-AR-A0TQ-10A TCGA-AR-A0TQ-10A-01D-A099-09 03e145ae-8680-4297-bb3f-0553fb6ce01d Somatic Mutations IlluminaGA_DNASeq 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1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11D-A087-01 0d98d3ff-375a-4f82-ba8e-734a8a8fc17e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C08_698096.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11D-A087-01 0d98d3ff-375a-4f82-ba8e-734a8a8fc17e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C08_698096.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11D-A087-01 0d98d3ff-375a-4f82-ba8e-734a8a8fc17e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C08_698096.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11D-A087-01 0d98d3ff-375a-4f82-ba8e-734a8a8fc17e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C08_698096.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11D-A087-01 0d98d3ff-375a-4f82-ba8e-734a8a8fc17e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C08_698096.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11D-A087-01 0d98d3ff-375a-4f82-ba8e-734a8a8fc17e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C08_698096.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11D-A087-01 0d98d3ff-375a-4f82-ba8e-734a8a8fc17e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C08_698096.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11D-A087-01 0d98d3ff-375a-4f82-ba8e-734a8a8fc17e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C08_698096.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11D-A088-05 579f2697-fa99-42e6-b60b-c27a44dfdd5b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11D-A099-09 58ca11bf-17b0-4cff-b210-5b85d8e66ef5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11D-A099-09 58ca11bf-17b0-4cff-b210-5b85d8e66ef5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11D-A099-09 58ca11bf-17b0-4cff-b210-5b85d8e66ef5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11D-A10P-05 00a173ee-32df-4747-8b04-05b3913e3118 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11D-A10P-05 00a173ee-32df-4747-8b04-05b3913e3118 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791020_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11D-A10P-05 00a173ee-32df-4747-8b04-05b3913e3118 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791020_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11D-A10P-05 00a173ee-32df-4747-8b04-05b3913e3118 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-AR-A0TR-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11D-A10P-05 00a173ee-32df-4747-8b04-05b3913e3118 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-AR-A0TR-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11R-A084-07 b31bf328-6ead-4ee4-b8c7-4407372dc683 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11R-A084-07 b31bf328-6ead-4ee4-b8c7-4407372dc683 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012568_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11R-A084-07 b31bf328-6ead-4ee4-b8c7-4407372dc683 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012568_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11R-A084-07 b31bf328-6ead-4ee4-b8c7-4407372dc683 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012568_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11R-A084-07 b31bf328-6ead-4ee4-b8c7-4407372dc683 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477710.TCGA-AR-A0TR-01A-11R-A084-07.110325_UNC13-SN749_0047_AB02CWABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11R-A084-07 b31bf328-6ead-4ee4-b8c7-4407372dc683 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477806.TCGA-AR-A0TR-01A-11R-A084-07.110325_UNC13-SN749_0047_AB02CWABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11R-A084-07 b31bf328-6ead-4ee4-b8c7-4407372dc683 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477989.TCGA-AR-A0TR-01A-11R-A084-07.110325_UNC13-SN749_0047_AB02CWABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11R-A085-13 858f878a-2f17-40c3-846a-cab4c0c79b69 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11R-A085-13 858f878a-2f17-40c3-846a-cab4c0c79b69 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AR-A0TR-01A-11R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11R-A085-13 858f878a-2f17-40c3-846a-cab4c0c79b69 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AR-A0TR-01A-11R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11W-A097-09 71e76c67-de76-4ce9-89d2-ed9be76efec4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-01A TCGA-AR-A0TR-01A-11X-A098-09 4fd81fa4-bf00-4df6-b80c-ef2d8b53adec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-10A TCGA-AR-A0TR-10A-01D-A086-02 f24514bb-4260-4d82-a4e1-f94fca14b2ce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-10A TCGA-AR-A0TR-10A-01D-A087-01 3efec414-8a2d-4846-8d4b-57d7a7823b1e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-10A TCGA-AR-A0TR-10A-01D-A087-01 3efec414-8a2d-4846-8d4b-57d7a7823b1e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A09_698014.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-AR-A0TR TCGA-AR-A0TR-10A TCGA-AR-A0TR-10A-01D-A087-01 3efec414-8a2d-4846-8d4b-57d7a7823b1e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A09_698014.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-10A TCGA-AR-A0TR-10A-01D-A087-01 3efec414-8a2d-4846-8d4b-57d7a7823b1e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A09_698014.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-10A TCGA-AR-A0TR-10A-01D-A087-01 3efec414-8a2d-4846-8d4b-57d7a7823b1e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A09_698014.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-10A TCGA-AR-A0TR-10A-01D-A087-01 3efec414-8a2d-4846-8d4b-57d7a7823b1e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A09_698014.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-10A TCGA-AR-A0TR-10A-01D-A087-01 3efec414-8a2d-4846-8d4b-57d7a7823b1e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A09_698014.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-10A TCGA-AR-A0TR-10A-01D-A087-01 3efec414-8a2d-4846-8d4b-57d7a7823b1e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A09_698014.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-10A TCGA-AR-A0TR-10A-01D-A087-01 3efec414-8a2d-4846-8d4b-57d7a7823b1e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A09_698014.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-10A TCGA-AR-A0TR-10A-01D-A099-09 7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-10A TCGA-AR-A0TR-10A-01D-A099-09 7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-10A TCGA-AR-A0TR-10A-01D-A099-09 7ea31dd0-a2d2-4bc1-a2a8-c9555d4f0c31 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-10A TCGA-AR-A0TR-10A-01W-A097-09 5ba2fba1-738d-427a-a855-01f11bd5d785 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TR TCGA-AR-A0TR-10A TCGA-AR-A0TR-10A-01X-A098-09 6a063d6a-51a0-453b-b580-66103687cc88 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11D-A10X-02 9c42f102-a63f-4b9d-ac34-f781ab5e7a49 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11D-A10Y-09 c9253ecc-cfac-4cc5-8dab-1e502d34d103 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11D-A10Y-09 c9253ecc-cfac-4cc5-8dab-1e502d34d103 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11D-A111-01 51577886-4016-4714-8b35-c7a61a85baa2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11D-A111-01 51577886-4016-4714-8b35-c7a61a85baa2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H06_735056.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11D-A111-01 51577886-4016-4714-8b35-c7a61a85baa2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H06_735056.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11D-A111-01 51577886-4016-4714-8b35-c7a61a85baa2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H06_735056.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11D-A111-01 51577886-4016-4714-8b35-c7a61a85baa2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H06_735056.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11D-A111-01 51577886-4016-4714-8b35-c7a61a85baa2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H06_735056.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11D-A111-01 51577886-4016-4714-8b35-c7a61a85baa2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H06_735056.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11D-A111-01 51577886-4016-4714-8b35-c7a61a85baa2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H06_735056.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11D-A111-01 51577886-4016-4714-8b35-c7a61a85baa2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H06_735056.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11D-A112-05 6d92ec82-e07b-4e71-8738-5e2254bb6150 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11D-A112-05 6d92ec82-e07b-4e71-8738-5e2254bb6150 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-AR-A0TS-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11D-A112-05 6d92ec82-e07b-4e71-8738-5e2254bb6150 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-AR-A0TS-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11D-A112-05 6d92ec82-e07b-4e71-8738-5e2254bb6150 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-AR-A0TS-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11R-A114-13 7f7f7ee7-2d54-4b4b-9f59-daa86e3b3ef4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11R-A114-13 7f7f7ee7-2d54-4b4b-9f59-daa86e3b3ef4 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A0TS-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11R-A114-13 7f7f7ee7-2d54-4b4b-9f59-daa86e3b3ef4 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A0TS-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11R-A115-07 3e57b40c-7079-4f05-bf37-f560304966c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11R-A115-07 3e57b40c-7079-4f05-bf37-f560304966c1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012833_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11R-A115-07 3e57b40c-7079-4f05-bf37-f560304966c1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012833_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11R-A115-07 3e57b40c-7079-4f05-bf37-f560304966c1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012833_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11R-A115-07 3e57b40c-7079-4f05-bf37-f560304966c1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442074.TCGA-AR-A0TS-01A-11R-A115-07.110628_UNC10-SN254_0238_AC03J5ABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11R-A115-07 3e57b40c-7079-4f05-bf37-f560304966c1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442076.TCGA-AR-A0TS-01A-11R-A115-07.110628_UNC10-SN254_0238_AC03J5ABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11R-A115-07 3e57b40c-7079-4f05-bf37-f560304966c1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442168.TCGA-AR-A0TS-01A-11R-A115-07.110628_UNC10-SN254_0238_AC03J5ABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-01A TCGA-AR-A0TS-01A-11W-A12T-09 54d48c51-eee5-4310-927e-47f48961efae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-10A TCGA-AR-A0TS-10A-01D-A10Z-02 d1220497-d08c-4c2f-a251-1888c79194d4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-10A TCGA-AR-A0TS-10A-01D-A110-09 5554cf4e-b4a0-4938-b5d4-852a5bca8de7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-10A TCGA-AR-A0TS-10A-01D-A110-09 5554cf4e-b4a0-4938-b5d4-852a5bca8de7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-10A TCGA-AR-A0TS-10A-01D-A113-01 78dafacf-73e6-47ad-a3f2-8b44439ac459 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-10A TCGA-AR-A0TS-10A-01D-A113-01 78dafacf-73e6-47ad-a3f2-8b44439ac459 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E08_735064.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-AR-A0TS TCGA-AR-A0TS-10A TCGA-AR-A0TS-10A-01D-A113-01 78dafacf-73e6-47ad-a3f2-8b44439ac459 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E08_735064.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-10A TCGA-AR-A0TS-10A-01D-A113-01 78dafacf-73e6-47ad-a3f2-8b44439ac459 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E08_735064.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-10A TCGA-AR-A0TS-10A-01D-A113-01 78dafacf-73e6-47ad-a3f2-8b44439ac459 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E08_735064.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-10A TCGA-AR-A0TS-10A-01D-A113-01 78dafacf-73e6-47ad-a3f2-8b44439ac459 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E08_735064.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-10A TCGA-AR-A0TS-10A-01D-A113-01 78dafacf-73e6-47ad-a3f2-8b44439ac459 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E08_735064.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-10A TCGA-AR-A0TS-10A-01D-A113-01 78dafacf-73e6-47ad-a3f2-8b44439ac459 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E08_735064.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-10A TCGA-AR-A0TS-10A-01D-A113-01 78dafacf-73e6-47ad-a3f2-8b44439ac459 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E08_735064.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-AR-A0TS TCGA-AR-A0TS-10A TCGA-AR-A0TS-10A-01W-A12U-09 b32e7c75-0db2-411d-a0bf-9815a053156a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31D-A086-02 8609f067-e76f-4b69-910f-e9c9e6584ac9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31D-A087-01 2b2697ab-f5e8-476f-b043-62ecdf1ca8b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31D-A087-01 2b2697ab-f5e8-476f-b043-62ecdf1ca8b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G06_698084.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31D-A087-01 2b2697ab-f5e8-476f-b043-62ecdf1ca8b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G06_698084.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31D-A087-01 2b2697ab-f5e8-476f-b043-62ecdf1ca8b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G06_698084.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31D-A087-01 2b2697ab-f5e8-476f-b043-62ecdf1ca8b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G06_698084.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31D-A087-01 2b2697ab-f5e8-476f-b043-62ecdf1ca8b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G06_698084.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31D-A087-01 2b2697ab-f5e8-476f-b043-62ecdf1ca8b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G06_698084.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31D-A087-01 2b2697ab-f5e8-476f-b043-62ecdf1ca8b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G06_698084.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31D-A087-01 2b2697ab-f5e8-476f-b043-62ecdf1ca8b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G06_698084.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31D-A088-05 df2248da-a3ac-4a2e-9d7c-a1cddc88b7fa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31D-A099-09 29cfdc11-2f20-436e-8913-340909684c06 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31D-A099-09 29cfdc11-2f20-436e-8913-340909684c06 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31D-A099-09 29cfdc11-2f20-436e-8913-340909684c06 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31D-A10P-05 c2db9623-07ae-45fd-8b6b-a07cc8584936 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31D-A10P-05 c2db9623-07ae-45fd-8b6b-a07cc8584936 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791010_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31D-A10P-05 c2db9623-07ae-45fd-8b6b-a07cc8584936 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791010_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31D-A10P-05 c2db9623-07ae-45fd-8b6b-a07cc8584936 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-AR-A0TT-01A-31D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31D-A10P-05 c2db9623-07ae-45fd-8b6b-a07cc8584936 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-AR-A0TT-01A-31D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31R-A084-07 dc2ddb88-79d7-44b2-a770-a5f7dde21e3c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31R-A084-07 dc2ddb88-79d7-44b2-a770-a5f7dde21e3c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012300_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31R-A084-07 dc2ddb88-79d7-44b2-a770-a5f7dde21e3c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012300_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31R-A084-07 dc2ddb88-79d7-44b2-a770-a5f7dde21e3c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012300_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31R-A084-07 dc2ddb88-79d7-44b2-a770-a5f7dde21e3c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_444290.TCGA-AR-A0TT-01A-31R-A084-07.110315_UNC9-SN296_0160_BB05L8ABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31R-A084-07 dc2ddb88-79d7-44b2-a770-a5f7dde21e3c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_444296.TCGA-AR-A0TT-01A-31R-A084-07.110315_UNC9-SN296_0160_BB05L8ABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31R-A084-07 dc2ddb88-79d7-44b2-a770-a5f7dde21e3c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_444804.TCGA-AR-A0TT-01A-31R-A084-07.110315_UNC9-SN296_0160_BB05L8ABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31R-A085-13 be7d04c0-8705-4bb4-bd0e-448fa89aef32 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31R-A085-13 be7d04c0-8705-4bb4-bd0e-448fa89aef32 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AR-A0TT-01A-31R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31R-A085-13 be7d04c0-8705-4bb4-bd0e-448fa89aef32 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AR-A0TT-01A-31R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31W-A097-09 fe373ad4-01db-41f8-8832-cbb9d20926ff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-01A TCGA-AR-A0TT-01A-31X-A098-09 aa3ca3f3-3f9e-4c89-b315-87a5bc1d5790 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-10A TCGA-AR-A0TT-10A-01D-A086-02 9885bcfd-83b4-4816-9e4d-97735fe5462e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-10A TCGA-AR-A0TT-10A-01D-A087-01 eb3bd0e3-ecf8-4857-ab01-e1be3d81fe2a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-10A TCGA-AR-A0TT-10A-01D-A087-01 eb3bd0e3-ecf8-4857-ab01-e1be3d81fe2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G07_698040.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-AR-A0TT TCGA-AR-A0TT-10A TCGA-AR-A0TT-10A-01D-A087-01 eb3bd0e3-ecf8-4857-ab01-e1be3d81fe2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G07_698040.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-10A TCGA-AR-A0TT-10A-01D-A087-01 eb3bd0e3-ecf8-4857-ab01-e1be3d81fe2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G07_698040.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-10A TCGA-AR-A0TT-10A-01D-A087-01 eb3bd0e3-ecf8-4857-ab01-e1be3d81fe2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G07_698040.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-10A TCGA-AR-A0TT-10A-01D-A087-01 eb3bd0e3-ecf8-4857-ab01-e1be3d81fe2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G07_698040.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-10A TCGA-AR-A0TT-10A-01D-A087-01 eb3bd0e3-ecf8-4857-ab01-e1be3d81fe2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G07_698040.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-10A TCGA-AR-A0TT-10A-01D-A087-01 eb3bd0e3-ecf8-4857-ab01-e1be3d81fe2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G07_698040.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-10A TCGA-AR-A0TT-10A-01D-A087-01 eb3bd0e3-ecf8-4857-ab01-e1be3d81fe2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G07_698040.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-10A TCGA-AR-A0TT-10A-01D-A099-09 cbcfa0ba-0d96-4484-913a-c9079d24690d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-10A TCGA-AR-A0TT-10A-01D-A099-09 cbcfa0ba-0d96-4484-913a-c9079d24690d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-10A TCGA-AR-A0TT-10A-01D-A099-09 cbcfa0ba-0d96-4484-913a-c9079d24690d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-10A TCGA-AR-A0TT-10A-01W-A097-09 5104645d-1a96-4345-b1cf-c015948a1565 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TT TCGA-AR-A0TT-10A TCGA-AR-A0TT-10A-01X-A098-09 3b5c5b81-4de4-498d-810d-cf4420f4c987 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-01A TCGA-AR-A0TU-01A-31D-A106-02 e00819a1-4a65-4289-9dde-0800fc6c69f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-01A TCGA-AR-A0TU-01A-31D-A107-01 ebd66787-d03c-41f8-9054-ec39f4d0304f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.after_5NN.copynumber.data.txt'. TCGA-AR-A0TU TCGA-AR-A0TU-01A TCGA-AR-A0TU-01A-31D-A107-01 ebd66787-d03c-41f8-9054-ec39f4d0304f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.after_5NN.copynumber.data.txt'. TCGA-AR-A0TU TCGA-AR-A0TU-01A TCGA-AR-A0TU-01A-31D-A107-01 ebd66787-d03c-41f8-9054-ec39f4d0304f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.after_5NN.copynumber.data.txt'. TCGA-AR-A0TU TCGA-AR-A0TU-01A TCGA-AR-A0TU-01A-31D-A107-01 ebd66787-d03c-41f8-9054-ec39f4d0304f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.after_5NN.copynumber.data.txt'. TCGA-AR-A0TU TCGA-AR-A0TU-01A TCGA-AR-A0TU-01A-31D-A107-01 ebd66787-d03c-41f8-9054-ec39f4d0304f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.after_5NN.copynumber.data.txt'. TCGA-AR-A0TU TCGA-AR-A0TU-01A TCGA-AR-A0TU-01A-31D-A107-01 ebd66787-d03c-41f8-9054-ec39f4d0304f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.after_5NN.copynumber.data.txt'. TCGA-AR-A0TU TCGA-AR-A0TU-01A TCGA-AR-A0TU-01A-31D-A107-01 ebd66787-d03c-41f8-9054-ec39f4d0304f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D02_731068.after_5NN.copynumber.data.txt'. TCGA-AR-A0TU TCGA-AR-A0TU-01A TCGA-AR-A0TU-01A-31D-A10A-05 8db0e028-8a5c-4799-b5ba-f3bfd59da4ee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-01A TCGA-AR-A0TU-01A-31D-A10A-05 8db0e028-8a5c-4799-b5ba-f3bfd59da4ee DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486018_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-01A TCGA-AR-A0TU-01A-31D-A10A-05 8db0e028-8a5c-4799-b5ba-f3bfd59da4ee DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486018_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-01A TCGA-AR-A0TU-01A-31D-A10A-05 8db0e028-8a5c-4799-b5ba-f3bfd59da4ee DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-AR-A0TU-01A-31D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-01A TCGA-AR-A0TU-01A-31D-A10A-05 8db0e028-8a5c-4799-b5ba-f3bfd59da4ee DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-AR-A0TU-01A-31D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-01A TCGA-AR-A0TU-01A-31D-A10G-09 31922dbe-3b4a-4ac1-98fc-db88ae851462 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-01A TCGA-AR-A0TU-01A-31D-A10G-09 31922dbe-3b4a-4ac1-98fc-db88ae851462 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-01A TCGA-AR-A0TU-01A-31R-A108-13 3c405153-559e-4c26-a684-b0e7820cad92 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-01A TCGA-AR-A0TU-01A-31R-A109-07 2877059f-b560-413b-b8be-40d9fde8fbcf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-01A TCGA-AR-A0TU-01A-31R-A109-07 2877059f-b560-413b-b8be-40d9fde8fbcf Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012686_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-01A TCGA-AR-A0TU-01A-31R-A109-07 2877059f-b560-413b-b8be-40d9fde8fbcf Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012686_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-01A TCGA-AR-A0TU-01A-31R-A109-07 2877059f-b560-413b-b8be-40d9fde8fbcf Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012686_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-01A TCGA-AR-A0TU-01A-31R-A109-07 2877059f-b560-413b-b8be-40d9fde8fbcf RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_491178.TCGA-AR-A0TU-01A-31R-A109-07.110912_UNC13-SN749_0112_BD0DDTABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-01A TCGA-AR-A0TU-01A-31R-A109-07 2877059f-b560-413b-b8be-40d9fde8fbcf RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_491181.TCGA-AR-A0TU-01A-31R-A109-07.110912_UNC13-SN749_0112_BD0DDTABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-01A TCGA-AR-A0TU-01A-31R-A109-07 2877059f-b560-413b-b8be-40d9fde8fbcf RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_491218.TCGA-AR-A0TU-01A-31R-A109-07.110912_UNC13-SN749_0112_BD0DDTABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-01A TCGA-AR-A0TU-01A-31X-A10H-09 7511c2d5-126b-4aa9-8567-deed44734a9f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-10A TCGA-AR-A0TU-10A-01D-A106-02 c5244957-8900-4eac-b127-01e2ea5663c5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-10A TCGA-AR-A0TU-10A-01D-A107-01 d7589bb4-0325-4c69-a4d7-b2b0714f188e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-10A TCGA-AR-A0TU-10A-01D-A107-01 d7589bb4-0325-4c69-a4d7-b2b0714f188e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D04_731030.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-AR-A0TU TCGA-AR-A0TU-10A TCGA-AR-A0TU-10A-01D-A107-01 d7589bb4-0325-4c69-a4d7-b2b0714f188e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D04_731030.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-10A TCGA-AR-A0TU-10A-01D-A107-01 d7589bb4-0325-4c69-a4d7-b2b0714f188e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D04_731030.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-10A TCGA-AR-A0TU-10A-01D-A107-01 d7589bb4-0325-4c69-a4d7-b2b0714f188e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D04_731030.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-10A TCGA-AR-A0TU-10A-01D-A107-01 d7589bb4-0325-4c69-a4d7-b2b0714f188e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D04_731030.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-10A TCGA-AR-A0TU-10A-01D-A107-01 d7589bb4-0325-4c69-a4d7-b2b0714f188e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D04_731030.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-10A TCGA-AR-A0TU-10A-01D-A107-01 d7589bb4-0325-4c69-a4d7-b2b0714f188e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D04_731030.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-10A TCGA-AR-A0TU-10A-01D-A107-01 d7589bb4-0325-4c69-a4d7-b2b0714f188e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D04_731030.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-10A TCGA-AR-A0TU-10A-01D-A10G-09 406d5b1c-1023-40c4-bd89-aaa03b36ac39 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-10A TCGA-AR-A0TU-10A-01D-A10G-09 406d5b1c-1023-40c4-bd89-aaa03b36ac39 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0TU TCGA-AR-A0TU-10A TCGA-AR-A0TU-10A-01X-A10H-09 9d173c90-39c3-42c7-b40f-53d666041530 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21D-A086-02 ff73a510-94a3-41ab-970c-76796513f948 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21D-A087-01 5f623237-b478-4bca-8647-d633e9e63d7c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21D-A087-01 5f623237-b478-4bca-8647-d633e9e63d7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A10_698106.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21D-A087-01 5f623237-b478-4bca-8647-d633e9e63d7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A10_698106.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21D-A087-01 5f623237-b478-4bca-8647-d633e9e63d7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A10_698106.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21D-A087-01 5f623237-b478-4bca-8647-d633e9e63d7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A10_698106.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21D-A087-01 5f623237-b478-4bca-8647-d633e9e63d7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A10_698106.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21D-A087-01 5f623237-b478-4bca-8647-d633e9e63d7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A10_698106.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21D-A087-01 5f623237-b478-4bca-8647-d633e9e63d7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A10_698106.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21D-A087-01 5f623237-b478-4bca-8647-d633e9e63d7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A10_698106.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21D-A088-05 3f8c2908-2d0a-4848-8314-723c13f9e502 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21D-A099-09 0ec80200-12fe-479c-8ea0-982a9995f55a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21D-A099-09 0ec80200-12fe-479c-8ea0-982a9995f55a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21D-A099-09 0ec80200-12fe-479c-8ea0-982a9995f55a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21D-A10P-05 85f991bb-7f19-4b6d-8c0b-3a2b2d28f29c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21D-A10P-05 85f991bb-7f19-4b6d-8c0b-3a2b2d28f29c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791006_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21D-A10P-05 85f991bb-7f19-4b6d-8c0b-3a2b2d28f29c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791006_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21D-A10P-05 85f991bb-7f19-4b6d-8c0b-3a2b2d28f29c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-AR-A0TV-01A-21D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21D-A10P-05 85f991bb-7f19-4b6d-8c0b-3a2b2d28f29c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-AR-A0TV-01A-21D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21R-A084-07 3d0d24de-c3b4-4396-bfb1-2c8c2788cf0c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21R-A084-07 3d0d24de-c3b4-4396-bfb1-2c8c2788cf0c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012597_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21R-A084-07 3d0d24de-c3b4-4396-bfb1-2c8c2788cf0c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012597_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21R-A084-07 3d0d24de-c3b4-4396-bfb1-2c8c2788cf0c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012597_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21R-A084-07 3d0d24de-c3b4-4396-bfb1-2c8c2788cf0c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443735.TCGA-AR-A0TV-01A-21R-A084-07.110315_UNC9-SN296_0160_BB05L8ABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21R-A084-07 3d0d24de-c3b4-4396-bfb1-2c8c2788cf0c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443811.TCGA-AR-A0TV-01A-21R-A084-07.110315_UNC9-SN296_0160_BB05L8ABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21R-A084-07 3d0d24de-c3b4-4396-bfb1-2c8c2788cf0c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443874.TCGA-AR-A0TV-01A-21R-A084-07.110315_UNC9-SN296_0160_BB05L8ABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21R-A085-13 d3fdf16b-e925-4e68-b648-b45e0e00510e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21R-A085-13 d3fdf16b-e925-4e68-b648-b45e0e00510e miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AR-A0TV-01A-21R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21R-A085-13 d3fdf16b-e925-4e68-b648-b45e0e00510e miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AR-A0TV-01A-21R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21W-A097-09 a03d83bf-5bd3-4dfa-aa10-cc65347c66d1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-01A TCGA-AR-A0TV-01A-21X-A098-09 0efaa7f3-ebf4-4fe6-aff0-331b92f69c6d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-10A TCGA-AR-A0TV-10A-01D-A086-02 abe2d98f-482e-4ae5-94b8-68ca94b71c82 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-10A TCGA-AR-A0TV-10A-01D-A087-01 f1bdb497-060f-4cbb-bd8a-45f60bbf40cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-10A TCGA-AR-A0TV-10A-01D-A087-01 f1bdb497-060f-4cbb-bd8a-45f60bbf40cf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H10_698018.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-AR-A0TV TCGA-AR-A0TV-10A TCGA-AR-A0TV-10A-01D-A087-01 f1bdb497-060f-4cbb-bd8a-45f60bbf40cf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H10_698018.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-10A TCGA-AR-A0TV-10A-01D-A087-01 f1bdb497-060f-4cbb-bd8a-45f60bbf40cf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H10_698018.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-10A TCGA-AR-A0TV-10A-01D-A087-01 f1bdb497-060f-4cbb-bd8a-45f60bbf40cf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H10_698018.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-10A TCGA-AR-A0TV-10A-01D-A087-01 f1bdb497-060f-4cbb-bd8a-45f60bbf40cf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H10_698018.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-10A TCGA-AR-A0TV-10A-01D-A087-01 f1bdb497-060f-4cbb-bd8a-45f60bbf40cf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H10_698018.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-10A TCGA-AR-A0TV-10A-01D-A087-01 f1bdb497-060f-4cbb-bd8a-45f60bbf40cf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H10_698018.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-10A TCGA-AR-A0TV-10A-01D-A087-01 f1bdb497-060f-4cbb-bd8a-45f60bbf40cf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H10_698018.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-10A TCGA-AR-A0TV-10A-01D-A099-09 7df70a01-366a-48ed-992a-3959d56bddde Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-10A TCGA-AR-A0TV-10A-01D-A099-09 7df70a01-366a-48ed-992a-3959d56bddde Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-10A TCGA-AR-A0TV-10A-01D-A099-09 7df70a01-366a-48ed-992a-3959d56bddde Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-10A TCGA-AR-A0TV-10A-01W-A097-09 b48d1067-ba9d-4219-875c-a84a88a88e9f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TV TCGA-AR-A0TV-10A TCGA-AR-A0TV-10A-01X-A098-09 9c5be55d-c393-49a2-8b93-e4af56699d2b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11D-A086-02 3e0ae59c-b1e3-4187-80df-ee5aed977e4a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11D-A087-01 18466ec8-1c12-4047-b792-9693e00fe15b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11D-A087-01 18466ec8-1c12-4047-b792-9693e00fe15b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A11_698152.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11D-A087-01 18466ec8-1c12-4047-b792-9693e00fe15b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A11_698152.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11D-A087-01 18466ec8-1c12-4047-b792-9693e00fe15b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A11_698152.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11D-A087-01 18466ec8-1c12-4047-b792-9693e00fe15b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A11_698152.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11D-A087-01 18466ec8-1c12-4047-b792-9693e00fe15b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A11_698152.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11D-A087-01 18466ec8-1c12-4047-b792-9693e00fe15b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A11_698152.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11D-A087-01 18466ec8-1c12-4047-b792-9693e00fe15b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A11_698152.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11D-A087-01 18466ec8-1c12-4047-b792-9693e00fe15b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A11_698152.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11D-A088-05 1365956d-bf47-4e3d-90eb-e540d7b83133 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11D-A099-09 b40d49ed-bc30-4656-9f36-ffc280de2fb8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11D-A099-09 b40d49ed-bc30-4656-9f36-ffc280de2fb8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11D-A10P-05 df471791-cab4-4b63-b068-0c204dc3f105 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11D-A10P-05 df471791-cab4-4b63-b068-0c204dc3f105 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791020_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11D-A10P-05 df471791-cab4-4b63-b068-0c204dc3f105 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791020_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11D-A10P-05 df471791-cab4-4b63-b068-0c204dc3f105 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-AR-A0TW-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11D-A10P-05 df471791-cab4-4b63-b068-0c204dc3f105 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-AR-A0TW-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11R-A084-07 f8fd0762-44b8-41ff-9c1a-ff688497e312 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11R-A084-07 f8fd0762-44b8-41ff-9c1a-ff688497e312 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012618_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11R-A084-07 f8fd0762-44b8-41ff-9c1a-ff688497e312 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012618_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11R-A084-07 f8fd0762-44b8-41ff-9c1a-ff688497e312 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012618_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11R-A084-07 f8fd0762-44b8-41ff-9c1a-ff688497e312 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476957.TCGA-AR-A0TW-01A-11R-A084-07.110406_UNC13-SN749_0049_AC008AABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11R-A084-07 f8fd0762-44b8-41ff-9c1a-ff688497e312 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476977.TCGA-AR-A0TW-01A-11R-A084-07.110406_UNC13-SN749_0049_AC008AABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11R-A084-07 f8fd0762-44b8-41ff-9c1a-ff688497e312 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477024.TCGA-AR-A0TW-01A-11R-A084-07.110406_UNC13-SN749_0049_AC008AABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11R-A085-13 0135d16e-46e7-460b-b189-a816757cd9d7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11W-A097-09 9d037f7a-ccea-402f-81b8-90188fbd49ae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-01A TCGA-AR-A0TW-01A-11X-A098-09 6e0ede64-7159-47ca-a3a7-93e7787b9d38 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-10A TCGA-AR-A0TW-10A-01D-A086-02 e14cea8f-115d-4657-8113-13b0c33fd893 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-10A TCGA-AR-A0TW-10A-01D-A087-01 1cc4d5a4-9efc-4bdb-81a5-4ee4ac15e86b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-10A TCGA-AR-A0TW-10A-01D-A087-01 1cc4d5a4-9efc-4bdb-81a5-4ee4ac15e86b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C10_698042.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-AR-A0TW TCGA-AR-A0TW-10A TCGA-AR-A0TW-10A-01D-A087-01 1cc4d5a4-9efc-4bdb-81a5-4ee4ac15e86b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C10_698042.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-10A TCGA-AR-A0TW-10A-01D-A087-01 1cc4d5a4-9efc-4bdb-81a5-4ee4ac15e86b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C10_698042.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-10A TCGA-AR-A0TW-10A-01D-A087-01 1cc4d5a4-9efc-4bdb-81a5-4ee4ac15e86b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C10_698042.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-10A TCGA-AR-A0TW-10A-01D-A087-01 1cc4d5a4-9efc-4bdb-81a5-4ee4ac15e86b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C10_698042.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-10A TCGA-AR-A0TW-10A-01D-A087-01 1cc4d5a4-9efc-4bdb-81a5-4ee4ac15e86b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C10_698042.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-10A TCGA-AR-A0TW-10A-01D-A087-01 1cc4d5a4-9efc-4bdb-81a5-4ee4ac15e86b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C10_698042.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-10A TCGA-AR-A0TW-10A-01D-A087-01 1cc4d5a4-9efc-4bdb-81a5-4ee4ac15e86b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C10_698042.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-10A TCGA-AR-A0TW-10A-01D-A099-09 c249f74b-0e60-44ab-ac33-7f245ae3e4f3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-10A TCGA-AR-A0TW-10A-01D-A099-09 c249f74b-0e60-44ab-ac33-7f245ae3e4f3 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-10A TCGA-AR-A0TW-10A-01W-A097-09 19881f4a-fa64-4750-8cb8-f33bb18047a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TW TCGA-AR-A0TW-10A TCGA-AR-A0TW-10A-01X-A098-09 253f48bc-4c48-4f9d-80e5-15a48dde8cf0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11D-A086-02 4de4a815-1335-40e5-8147-afefb9c12c44 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11D-A087-01 ffb216a3-2131-42ce-97ba-9a4fb4ad0a69 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11D-A087-01 ffb216a3-2131-42ce-97ba-9a4fb4ad0a69 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H09_698138.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11D-A087-01 ffb216a3-2131-42ce-97ba-9a4fb4ad0a69 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H09_698138.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11D-A087-01 ffb216a3-2131-42ce-97ba-9a4fb4ad0a69 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H09_698138.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11D-A087-01 ffb216a3-2131-42ce-97ba-9a4fb4ad0a69 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H09_698138.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11D-A087-01 ffb216a3-2131-42ce-97ba-9a4fb4ad0a69 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H09_698138.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11D-A087-01 ffb216a3-2131-42ce-97ba-9a4fb4ad0a69 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H09_698138.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11D-A087-01 ffb216a3-2131-42ce-97ba-9a4fb4ad0a69 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H09_698138.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11D-A087-01 ffb216a3-2131-42ce-97ba-9a4fb4ad0a69 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H09_698138.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11D-A088-05 590ef017-1117-4e5e-b9ef-2321b7669b93 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11D-A099-09 63d635fa-d136-4e8a-a534-966ee678bb66 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11D-A099-09 63d635fa-d136-4e8a-a534-966ee678bb66 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11D-A10P-05 5156000f-a031-4d84-8d98-3d384f7ae5cc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11D-A10P-05 5156000f-a031-4d84-8d98-3d384f7ae5cc DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791006_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11D-A10P-05 5156000f-a031-4d84-8d98-3d384f7ae5cc DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791006_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11D-A10P-05 5156000f-a031-4d84-8d98-3d384f7ae5cc DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-AR-A0TX-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11D-A10P-05 5156000f-a031-4d84-8d98-3d384f7ae5cc DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-AR-A0TX-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11D-A19H-09 ddc7377d-82c3-480a-be3c-3d1da52c77d4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11R-A084-07 08d85849-cda7-4709-a934-fdc586418d7f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11R-A084-07 08d85849-cda7-4709-a934-fdc586418d7f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012601_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11R-A084-07 08d85849-cda7-4709-a934-fdc586418d7f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012601_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11R-A084-07 08d85849-cda7-4709-a934-fdc586418d7f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012601_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11R-A084-07 08d85849-cda7-4709-a934-fdc586418d7f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476577.TCGA-AR-A0TX-01A-11R-A084-07.110406_UNC13-SN749_0050_BB05L2ABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11R-A084-07 08d85849-cda7-4709-a934-fdc586418d7f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476621.TCGA-AR-A0TX-01A-11R-A084-07.110406_UNC13-SN749_0050_BB05L2ABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11R-A084-07 08d85849-cda7-4709-a934-fdc586418d7f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476695.TCGA-AR-A0TX-01A-11R-A084-07.110406_UNC13-SN749_0050_BB05L2ABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11R-A085-13 ff3662ab-3829-43d4-8942-1fc419cfdbb9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11R-A085-13 ff3662ab-3829-43d4-8942-1fc419cfdbb9 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AR-A0TX-01A-11R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11R-A085-13 ff3662ab-3829-43d4-8942-1fc419cfdbb9 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AR-A0TX-01A-11R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11W-A097-09 1aca1a02-2be3-46ea-a293-69d5bf90bfb5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-01A TCGA-AR-A0TX-01A-11X-A098-09 8a48c862-3bd6-46a1-895e-d9a89e521f1c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-10A TCGA-AR-A0TX-10A-01D-A086-02 bba9b37d-d8f5-4401-a06a-55ed1034806c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-10A TCGA-AR-A0TX-10A-01D-A087-01 b9203cd6-3ade-42fe-8fee-09373ab6cef0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-10A TCGA-AR-A0TX-10A-01D-A087-01 b9203cd6-3ade-42fe-8fee-09373ab6cef0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H11_697976.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-AR-A0TX TCGA-AR-A0TX-10A TCGA-AR-A0TX-10A-01D-A087-01 b9203cd6-3ade-42fe-8fee-09373ab6cef0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H11_697976.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-10A TCGA-AR-A0TX-10A-01D-A087-01 b9203cd6-3ade-42fe-8fee-09373ab6cef0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H11_697976.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-10A TCGA-AR-A0TX-10A-01D-A087-01 b9203cd6-3ade-42fe-8fee-09373ab6cef0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H11_697976.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TX TCGA-AR-A0TX-10A TCGA-AR-A0TX-10A-01D-A087-01 b9203cd6-3ade-42fe-8fee-09373ab6cef0 SNP Genome_Wide_SNP_6 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1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12D-A10X-02 0c6b2dcd-4e83-4e36-b58d-d861f4836f87 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12D-A10Y-09 888f342e-03eb-4c31-9b49-c98734c2d29c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12D-A111-01 1614a21e-1cc6-430a-a5da-c2a15e4542b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12D-A111-01 1614a21e-1cc6-430a-a5da-c2a15e4542b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B06_735144.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12D-A111-01 1614a21e-1cc6-430a-a5da-c2a15e4542b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B06_735144.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12D-A111-01 1614a21e-1cc6-430a-a5da-c2a15e4542b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B06_735144.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12D-A111-01 1614a21e-1cc6-430a-a5da-c2a15e4542b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B06_735144.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12D-A111-01 1614a21e-1cc6-430a-a5da-c2a15e4542b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B06_735144.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12D-A111-01 1614a21e-1cc6-430a-a5da-c2a15e4542b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B06_735144.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12D-A111-01 1614a21e-1cc6-430a-a5da-c2a15e4542b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B06_735144.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12D-A111-01 1614a21e-1cc6-430a-a5da-c2a15e4542b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B06_735144.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12D-A112-05 799cf94d-1f03-4aad-a862-0a39a2d1181d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12D-A112-05 799cf94d-1f03-4aad-a862-0a39a2d1181d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-AR-A0TY-01A-12D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12D-A112-05 799cf94d-1f03-4aad-a862-0a39a2d1181d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-AR-A0TY-01A-12D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12D-A112-05 799cf94d-1f03-4aad-a862-0a39a2d1181d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-AR-A0TY-01A-12D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12R-A114-13 f1b79fd7-f431-40b5-a750-f2f458863abf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12R-A114-13 f1b79fd7-f431-40b5-a750-f2f458863abf miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A0TY-01A-12R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12R-A114-13 f1b79fd7-f431-40b5-a750-f2f458863abf miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A0TY-01A-12R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12R-A115-07 7fe47d2c-6b7d-4fa3-8e22-14fdb2b44920 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12R-A115-07 7fe47d2c-6b7d-4fa3-8e22-14fdb2b44920 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012745_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12R-A115-07 7fe47d2c-6b7d-4fa3-8e22-14fdb2b44920 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012745_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12R-A115-07 7fe47d2c-6b7d-4fa3-8e22-14fdb2b44920 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012745_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12R-A115-07 7fe47d2c-6b7d-4fa3-8e22-14fdb2b44920 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421132.TCGA-AR-A0TY-01A-12R-A115-07.110606_UNC12-SN629_0090_AD0CTGABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12R-A115-07 7fe47d2c-6b7d-4fa3-8e22-14fdb2b44920 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421146.TCGA-AR-A0TY-01A-12R-A115-07.110606_UNC12-SN629_0090_AD0CTGABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12R-A115-07 7fe47d2c-6b7d-4fa3-8e22-14fdb2b44920 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421180.TCGA-AR-A0TY-01A-12R-A115-07.110606_UNC12-SN629_0090_AD0CTGABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12W-A12T-09 f915733b-aaf4-406d-af52-00de113e8e0c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-01A TCGA-AR-A0TY-01A-12W-A12T-09 f915733b-aaf4-406d-af52-00de113e8e0c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-10A TCGA-AR-A0TY-10A-01D-A10Z-02 d8cba70d-f992-49c9-8d15-37d04c5eb64c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-10A TCGA-AR-A0TY-10A-01D-A110-09 f5cfd725-897e-4728-91bc-ba3957d43764 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-10A TCGA-AR-A0TY-10A-01D-A110-09 f5cfd725-897e-4728-91bc-ba3957d43764 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-10A TCGA-AR-A0TY-10A-01D-A113-01 c89057a9-8d18-44a0-a040-57726857a7ba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-10A TCGA-AR-A0TY-10A-01D-A113-01 c89057a9-8d18-44a0-a040-57726857a7ba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E10_735154.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-AR-A0TY TCGA-AR-A0TY-10A TCGA-AR-A0TY-10A-01D-A113-01 c89057a9-8d18-44a0-a040-57726857a7ba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E10_735154.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-10A TCGA-AR-A0TY-10A-01D-A113-01 c89057a9-8d18-44a0-a040-57726857a7ba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E10_735154.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-10A TCGA-AR-A0TY-10A-01D-A113-01 c89057a9-8d18-44a0-a040-57726857a7ba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E10_735154.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-10A TCGA-AR-A0TY-10A-01D-A113-01 c89057a9-8d18-44a0-a040-57726857a7ba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E10_735154.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-10A TCGA-AR-A0TY-10A-01D-A113-01 c89057a9-8d18-44a0-a040-57726857a7ba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E10_735154.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-10A TCGA-AR-A0TY-10A-01D-A113-01 c89057a9-8d18-44a0-a040-57726857a7ba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E10_735154.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-10A TCGA-AR-A0TY-10A-01D-A113-01 c89057a9-8d18-44a0-a040-57726857a7ba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E10_735154.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-AR-A0TY TCGA-AR-A0TY-10A TCGA-AR-A0TY-10A-01W-A12U-09 c4ab6d10-80a9-4e7a-ae66-d7db82af776e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-01A TCGA-AR-A0TZ-01A-12D-A086-02 5a04b262-7d49-419b-a3b7-fb8f4a64c02e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-01A TCGA-AR-A0TZ-01A-12D-A087-01 0509eaa2-2671-4c59-b98b-200a6132cede Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-01A TCGA-AR-A0TZ-01A-12D-A087-01 0509eaa2-2671-4c59-b98b-200a6132cede SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C09_698034.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-AR-A0TZ TCGA-AR-A0TZ-01A TCGA-AR-A0TZ-01A-12D-A087-01 0509eaa2-2671-4c59-b98b-200a6132cede SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C09_698034.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-01A TCGA-AR-A0TZ-01A-12D-A087-01 0509eaa2-2671-4c59-b98b-200a6132cede SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C09_698034.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-01A TCGA-AR-A0TZ-01A-12D-A087-01 0509eaa2-2671-4c59-b98b-200a6132cede SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C09_698034.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-01A TCGA-AR-A0TZ-01A-12D-A087-01 0509eaa2-2671-4c59-b98b-200a6132cede SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C09_698034.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-01A TCGA-AR-A0TZ-01A-12D-A087-01 0509eaa2-2671-4c59-b98b-200a6132cede SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C09_698034.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-01A TCGA-AR-A0TZ-01A-12D-A087-01 0509eaa2-2671-4c59-b98b-200a6132cede SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C09_698034.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-01A TCGA-AR-A0TZ-01A-12D-A087-01 0509eaa2-2671-4c59-b98b-200a6132cede SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C09_698034.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-01A TCGA-AR-A0TZ-01A-12D-A088-05 4dc4756b-b136-46aa-b4f4-fffab1aa5474 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-01A TCGA-AR-A0TZ-01A-12D-A099-09 90a26d5e-356b-424c-80bc-4723d24c594f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-01A TCGA-AR-A0TZ-01A-12D-A099-09 90a26d5e-356b-424c-80bc-4723d24c594f Somatic Mutations IlluminaGA_DNASeq 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1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-01A TCGA-AR-A0TZ-01A-12D-A10P-05 7fec8c8c-2ea5-44aa-b666-df1c8cb71cce DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-AR-A0TZ-01A-12D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-01A TCGA-AR-A0TZ-01A-12D-A10P-05 7fec8c8c-2ea5-44aa-b666-df1c8cb71cce DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-AR-A0TZ-01A-12D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-01A TCGA-AR-A0TZ-01A-12R-A084-07 1d6480da-a470-4726-8bc4-57fa30799a15 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-01A TCGA-AR-A0TZ-01A-12R-A084-07 1d6480da-a470-4726-8bc4-57fa30799a15 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012628_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-AR-A0TZ TCGA-AR-A0TZ-01A TCGA-AR-A0TZ-01A-12R-A084-07 1d6480da-a470-4726-8bc4-57fa30799a15 Expression-Genes AgilentG4502A_07_3 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_472608.TCGA-AR-A0TZ-01A-12R-A084-07.110426_UNC12-SN629_0077_AB08WNABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-01A TCGA-AR-A0TZ-01A-12R-A085-13 b71953f3-cd70-4973-bd7d-43bdf994f4ff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-01A TCGA-AR-A0TZ-01A-12R-A085-13 b71953f3-cd70-4973-bd7d-43bdf994f4ff miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AR-A0TZ-01A-12R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-01A TCGA-AR-A0TZ-01A-12R-A085-13 b71953f3-cd70-4973-bd7d-43bdf994f4ff miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AR-A0TZ-01A-12R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-01A TCGA-AR-A0TZ-01A-12W-A097-09 993f97b5-b1dc-49e3-91c5-c73eaf28ee24 Complete Clinical Set bio 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1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-10A TCGA-AR-A0TZ-10A-01D-A087-01 3b7e7e46-523a-4d73-a04b-9d44285794c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-10A TCGA-AR-A0TZ-10A-01D-A087-01 3b7e7e46-523a-4d73-a04b-9d44285794c4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E09_698078.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-AR-A0TZ TCGA-AR-A0TZ-10A TCGA-AR-A0TZ-10A-01D-A087-01 3b7e7e46-523a-4d73-a04b-9d44285794c4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E09_698078.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-10A TCGA-AR-A0TZ-10A-01D-A087-01 3b7e7e46-523a-4d73-a04b-9d44285794c4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E09_698078.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-10A TCGA-AR-A0TZ-10A-01D-A087-01 3b7e7e46-523a-4d73-a04b-9d44285794c4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E09_698078.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-10A TCGA-AR-A0TZ-10A-01D-A087-01 3b7e7e46-523a-4d73-a04b-9d44285794c4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E09_698078.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-10A TCGA-AR-A0TZ-10A-01D-A087-01 3b7e7e46-523a-4d73-a04b-9d44285794c4 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E09_698078.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-10A TCGA-AR-A0TZ-10A-01D-A099-09 1d7bc726-8fc1-4a06-8c5f-4e08291b8952 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-10A TCGA-AR-A0TZ-10A-01D-A099-09 1d7bc726-8fc1-4a06-8c5f-4e08291b8952 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-10A TCGA-AR-A0TZ-10A-01D-A099-09 1d7bc726-8fc1-4a06-8c5f-4e08291b8952 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-10A TCGA-AR-A0TZ-10A-01W-A097-09 2ca40e49-174f-4f4a-bdaf-261f493cf306 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0TZ TCGA-AR-A0TZ-10A TCGA-AR-A0TZ-10A-01X-A098-09 77f83d8d-b165-4711-ae06-f4e8adc024a9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0TZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11D-A106-02 aef024f7-7569-4c20-bc5e-67c32f9ba3cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11D-A107-01 0c2f9cdb-8c8f-4741-b98f-0d41ac50be83 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11D-A107-01 0c2f9cdb-8c8f-4741-b98f-0d41ac50be83 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D06_731076.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11D-A107-01 0c2f9cdb-8c8f-4741-b98f-0d41ac50be83 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D06_731076.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11D-A107-01 0c2f9cdb-8c8f-4741-b98f-0d41ac50be83 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D06_731076.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11D-A107-01 0c2f9cdb-8c8f-4741-b98f-0d41ac50be83 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D06_731076.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11D-A107-01 0c2f9cdb-8c8f-4741-b98f-0d41ac50be83 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D06_731076.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11D-A107-01 0c2f9cdb-8c8f-4741-b98f-0d41ac50be83 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D06_731076.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11D-A107-01 0c2f9cdb-8c8f-4741-b98f-0d41ac50be83 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D06_731076.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11D-A107-01 0c2f9cdb-8c8f-4741-b98f-0d41ac50be83 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D06_731076.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11D-A10A-05 212b5083-8d9c-4824-a4ae-9800ada0684c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11D-A10A-05 212b5083-8d9c-4824-a4ae-9800ada0684c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486018_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11D-A10A-05 212b5083-8d9c-4824-a4ae-9800ada0684c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486018_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11D-A10A-05 212b5083-8d9c-4824-a4ae-9800ada0684c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-AR-A0U0-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11D-A10A-05 212b5083-8d9c-4824-a4ae-9800ada0684c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-AR-A0U0-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11D-A10G-09 79e2c073-7727-4c34-ac28-5d7895144743 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11D-A10G-09 79e2c073-7727-4c34-ac28-5d7895144743 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11D-A10G-09 79e2c073-7727-4c34-ac28-5d7895144743 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11R-A108-13 ab6cc0f4-3b7e-4ed9-b9e4-51f634a17720 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11R-A109-07 dea20128-b180-4da1-9da5-0f00bea3b1ab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11R-A109-07 dea20128-b180-4da1-9da5-0f00bea3b1ab Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012691_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11R-A109-07 dea20128-b180-4da1-9da5-0f00bea3b1ab Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012691_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11R-A109-07 dea20128-b180-4da1-9da5-0f00bea3b1ab Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012691_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11R-A109-07 dea20128-b180-4da1-9da5-0f00bea3b1ab RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_491195.TCGA-AR-A0U0-01A-11R-A109-07.110912_UNC13-SN749_0112_BD0DDTABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11R-A109-07 dea20128-b180-4da1-9da5-0f00bea3b1ab RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_491216.TCGA-AR-A0U0-01A-11R-A109-07.110912_UNC13-SN749_0112_BD0DDTABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11R-A109-07 dea20128-b180-4da1-9da5-0f00bea3b1ab RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_491221.TCGA-AR-A0U0-01A-11R-A109-07.110912_UNC13-SN749_0112_BD0DDTABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-01A TCGA-AR-A0U0-01A-11X-A10H-09 66353a8d-4d43-494f-9fa6-3464b272ab9c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-10A TCGA-AR-A0U0-10A-01D-A106-02 f55a791e-a2e6-4448-9a43-99c7b40fed50 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-10A TCGA-AR-A0U0-10A-01D-A107-01 9f3983d5-2f2d-4761-9b4d-4a2ea22ada7b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-10A TCGA-AR-A0U0-10A-01D-A107-01 9f3983d5-2f2d-4761-9b4d-4a2ea22ada7b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F09_730952.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-AR-A0U0 TCGA-AR-A0U0-10A TCGA-AR-A0U0-10A-01D-A107-01 9f3983d5-2f2d-4761-9b4d-4a2ea22ada7b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F09_730952.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-10A TCGA-AR-A0U0-10A-01D-A107-01 9f3983d5-2f2d-4761-9b4d-4a2ea22ada7b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F09_730952.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-10A TCGA-AR-A0U0-10A-01D-A107-01 9f3983d5-2f2d-4761-9b4d-4a2ea22ada7b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F09_730952.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-10A TCGA-AR-A0U0-10A-01D-A107-01 9f3983d5-2f2d-4761-9b4d-4a2ea22ada7b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F09_730952.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-10A TCGA-AR-A0U0-10A-01D-A107-01 9f3983d5-2f2d-4761-9b4d-4a2ea22ada7b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F09_730952.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-10A TCGA-AR-A0U0-10A-01D-A107-01 9f3983d5-2f2d-4761-9b4d-4a2ea22ada7b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F09_730952.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-10A TCGA-AR-A0U0-10A-01D-A107-01 9f3983d5-2f2d-4761-9b4d-4a2ea22ada7b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F09_730952.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-10A TCGA-AR-A0U0-10A-01D-A10G-09 4300938a-51ef-4124-b665-cf8cbebeeb0e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-10A TCGA-AR-A0U0-10A-01D-A10G-09 4300938a-51ef-4124-b665-cf8cbebeeb0e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-10A TCGA-AR-A0U0-10A-01D-A10G-09 4300938a-51ef-4124-b665-cf8cbebeeb0e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0U0 TCGA-AR-A0U0-10A TCGA-AR-A0U0-10A-01X-A10H-09 a32bad8e-adde-435d-9d72-c04d5bcf18ee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11D-A10X-02 2b796e01-ae07-48ad-ba31-1907cb134d5d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11D-A10Y-09 265ceec6-e9a8-499e-adf6-0c18c598532e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11D-A10Y-09 265ceec6-e9a8-499e-adf6-0c18c598532e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11D-A111-01 aee2ca13-3b6a-4459-b42a-b6a3c3496927 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11D-A111-01 aee2ca13-3b6a-4459-b42a-b6a3c3496927 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B07_735032.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11D-A111-01 aee2ca13-3b6a-4459-b42a-b6a3c3496927 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B07_735032.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11D-A111-01 aee2ca13-3b6a-4459-b42a-b6a3c3496927 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B07_735032.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11D-A111-01 aee2ca13-3b6a-4459-b42a-b6a3c3496927 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B07_735032.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11D-A111-01 aee2ca13-3b6a-4459-b42a-b6a3c3496927 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B07_735032.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11D-A111-01 aee2ca13-3b6a-4459-b42a-b6a3c3496927 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B07_735032.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11D-A111-01 aee2ca13-3b6a-4459-b42a-b6a3c3496927 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B07_735032.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11D-A111-01 aee2ca13-3b6a-4459-b42a-b6a3c3496927 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B07_735032.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11D-A112-05 efcefa20-7895-4028-b61e-74ec29fed90d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11D-A112-05 efcefa20-7895-4028-b61e-74ec29fed90d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-AR-A0U1-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11D-A112-05 efcefa20-7895-4028-b61e-74ec29fed90d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-AR-A0U1-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11D-A112-05 efcefa20-7895-4028-b61e-74ec29fed90d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-AR-A0U1-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11R-A114-13 acd25a3b-1975-45a6-acdf-6433eecc05ae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11R-A114-13 acd25a3b-1975-45a6-acdf-6433eecc05ae miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A0U1-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11R-A114-13 acd25a3b-1975-45a6-acdf-6433eecc05ae miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A0U1-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11R-A115-07 3450eaab-777a-46ab-9d13-8e0783c4a686 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11R-A115-07 3450eaab-777a-46ab-9d13-8e0783c4a686 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012762_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11R-A115-07 3450eaab-777a-46ab-9d13-8e0783c4a686 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012762_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11R-A115-07 3450eaab-777a-46ab-9d13-8e0783c4a686 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012762_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11R-A115-07 3450eaab-777a-46ab-9d13-8e0783c4a686 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_448934.TCGA-AR-A0U1-01A-11R-A115-07.110608_UNC13-SN749_0073_BD0CV8ABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11R-A115-07 3450eaab-777a-46ab-9d13-8e0783c4a686 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_449257.TCGA-AR-A0U1-01A-11R-A115-07.110608_UNC13-SN749_0073_BD0CV8ABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11R-A115-07 3450eaab-777a-46ab-9d13-8e0783c4a686 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_449266.TCGA-AR-A0U1-01A-11R-A115-07.110608_UNC13-SN749_0073_BD0CV8ABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-01A TCGA-AR-A0U1-01A-11W-A12T-09 87858b12-766a-4c5d-868b-54cf1f9613ac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-10A TCGA-AR-A0U1-10A-01D-A10Z-02 650bc0db-bd41-4c66-82b4-462737846979 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-10A TCGA-AR-A0U1-10A-01D-A110-09 30329e31-a2b2-4c2e-8291-f775e3c9fa14 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-10A TCGA-AR-A0U1-10A-01D-A110-09 30329e31-a2b2-4c2e-8291-f775e3c9fa14 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-10A TCGA-AR-A0U1-10A-01D-A113-01 d25d5dbd-2f03-4ff8-a4f7-9d4fc9fe744b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-10A TCGA-AR-A0U1-10A-01D-A113-01 d25d5dbd-2f03-4ff8-a4f7-9d4fc9fe744b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H04_735034.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-AR-A0U1 TCGA-AR-A0U1-10A TCGA-AR-A0U1-10A-01D-A113-01 d25d5dbd-2f03-4ff8-a4f7-9d4fc9fe744b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H04_735034.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-10A TCGA-AR-A0U1-10A-01D-A113-01 d25d5dbd-2f03-4ff8-a4f7-9d4fc9fe744b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H04_735034.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-10A TCGA-AR-A0U1-10A-01D-A113-01 d25d5dbd-2f03-4ff8-a4f7-9d4fc9fe744b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H04_735034.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-10A TCGA-AR-A0U1-10A-01D-A113-01 d25d5dbd-2f03-4ff8-a4f7-9d4fc9fe744b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H04_735034.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-10A TCGA-AR-A0U1-10A-01D-A113-01 d25d5dbd-2f03-4ff8-a4f7-9d4fc9fe744b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H04_735034.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-10A TCGA-AR-A0U1-10A-01D-A113-01 d25d5dbd-2f03-4ff8-a4f7-9d4fc9fe744b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H04_735034.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-10A TCGA-AR-A0U1-10A-01D-A113-01 d25d5dbd-2f03-4ff8-a4f7-9d4fc9fe744b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H04_735034.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-AR-A0U1 TCGA-AR-A0U1-10A TCGA-AR-A0U1-10A-01W-A12U-09 4419c577-6469-4a1b-bab8-2917530fa226 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11D-A106-02 906b85c8-c57e-451c-ab56-5842ad8bb196 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11D-A107-01 90cc0bf8-5e04-4c34-bc2d-7d9d3b98569c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11D-A107-01 90cc0bf8-5e04-4c34-bc2d-7d9d3b98569c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A04_731032.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11D-A107-01 90cc0bf8-5e04-4c34-bc2d-7d9d3b98569c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A04_731032.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11D-A107-01 90cc0bf8-5e04-4c34-bc2d-7d9d3b98569c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A04_731032.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11D-A107-01 90cc0bf8-5e04-4c34-bc2d-7d9d3b98569c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A04_731032.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11D-A107-01 90cc0bf8-5e04-4c34-bc2d-7d9d3b98569c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A04_731032.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11D-A107-01 90cc0bf8-5e04-4c34-bc2d-7d9d3b98569c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A04_731032.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11D-A107-01 90cc0bf8-5e04-4c34-bc2d-7d9d3b98569c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A04_731032.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11D-A107-01 90cc0bf8-5e04-4c34-bc2d-7d9d3b98569c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A04_731032.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11D-A10A-05 74779c15-a5a8-4d5c-ae11-95b5587abaeb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11D-A10A-05 74779c15-a5a8-4d5c-ae11-95b5587abaeb DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486029_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11D-A10A-05 74779c15-a5a8-4d5c-ae11-95b5587abaeb DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486029_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11D-A10A-05 74779c15-a5a8-4d5c-ae11-95b5587abaeb DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-AR-A0U2-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11D-A10A-05 74779c15-a5a8-4d5c-ae11-95b5587abaeb DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-AR-A0U2-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11D-A10G-09 f0194733-2347-43c4-a4a3-131642c27798 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11D-A10G-09 f0194733-2347-43c4-a4a3-131642c27798 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11D-A10G-09 f0194733-2347-43c4-a4a3-131642c27798 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11R-A108-13 c31fb359-d59e-42de-a917-e0026ef49687 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11R-A108-13 c31fb359-d59e-42de-a917-e0026ef49687 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AR-A0U2-01A-11R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11R-A108-13 c31fb359-d59e-42de-a917-e0026ef49687 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AR-A0U2-01A-11R-A108-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11R-A109-07 45f011a1-cc58-47f8-9545-66c313441650 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11R-A109-07 45f011a1-cc58-47f8-9545-66c313441650 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012308_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11R-A109-07 45f011a1-cc58-47f8-9545-66c313441650 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012308_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11R-A109-07 45f011a1-cc58-47f8-9545-66c313441650 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012308_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11R-A109-07 45f011a1-cc58-47f8-9545-66c313441650 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_487892.TCGA-AR-A0U2-01A-11R-A109-07.110913_UNC14-SN744_0165_BD0DCHABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11R-A109-07 45f011a1-cc58-47f8-9545-66c313441650 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_487896.TCGA-AR-A0U2-01A-11R-A109-07.110913_UNC14-SN744_0165_BD0DCHABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11R-A109-07 45f011a1-cc58-47f8-9545-66c313441650 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_487906.TCGA-AR-A0U2-01A-11R-A109-07.110913_UNC14-SN744_0165_BD0DCHABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-01A TCGA-AR-A0U2-01A-11X-A10H-09 1d0ba95a-f38d-4775-a0cd-96e8f7d559ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-10A TCGA-AR-A0U2-10A-01D-A106-02 220f2404-7f2f-4d23-9489-92c8a6866c50 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-10A TCGA-AR-A0U2-10A-01D-A107-01 7555d28d-2da1-45ee-98bc-0b4f180410fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-10A TCGA-AR-A0U2-10A-01D-A107-01 7555d28d-2da1-45ee-98bc-0b4f180410fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E01_730938.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-AR-A0U2 TCGA-AR-A0U2-10A TCGA-AR-A0U2-10A-01D-A107-01 7555d28d-2da1-45ee-98bc-0b4f180410fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E01_730938.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-10A TCGA-AR-A0U2-10A-01D-A107-01 7555d28d-2da1-45ee-98bc-0b4f180410fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E01_730938.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-10A TCGA-AR-A0U2-10A-01D-A107-01 7555d28d-2da1-45ee-98bc-0b4f180410fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E01_730938.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-10A TCGA-AR-A0U2-10A-01D-A107-01 7555d28d-2da1-45ee-98bc-0b4f180410fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E01_730938.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-10A TCGA-AR-A0U2-10A-01D-A107-01 7555d28d-2da1-45ee-98bc-0b4f180410fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E01_730938.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-10A TCGA-AR-A0U2-10A-01D-A107-01 7555d28d-2da1-45ee-98bc-0b4f180410fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E01_730938.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-10A TCGA-AR-A0U2-10A-01D-A107-01 7555d28d-2da1-45ee-98bc-0b4f180410fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E01_730938.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-10A TCGA-AR-A0U2-10A-01D-A10G-09 15bcbeef-a0ab-4b73-878e-34328e6270f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-10A TCGA-AR-A0U2-10A-01D-A10G-09 15bcbeef-a0ab-4b73-878e-34328e6270f4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-10A TCGA-AR-A0U2-10A-01D-A10G-09 15bcbeef-a0ab-4b73-878e-34328e6270f4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0U2 TCGA-AR-A0U2-10A TCGA-AR-A0U2-10A-01X-A10H-09 7cdeea2e-589f-46ea-80f1-9cba27319ee3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11D-A106-02 bf6d7d70-e591-4e91-b28e-28a234777449 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11D-A107-01 c64f2c9b-e2e4-4a48-94e8-7f76569c8b7b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11D-A107-01 c64f2c9b-e2e4-4a48-94e8-7f76569c8b7b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E02_730910.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11D-A107-01 c64f2c9b-e2e4-4a48-94e8-7f76569c8b7b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E02_730910.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11D-A107-01 c64f2c9b-e2e4-4a48-94e8-7f76569c8b7b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E02_730910.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11D-A107-01 c64f2c9b-e2e4-4a48-94e8-7f76569c8b7b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E02_730910.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11D-A107-01 c64f2c9b-e2e4-4a48-94e8-7f76569c8b7b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E02_730910.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11D-A107-01 c64f2c9b-e2e4-4a48-94e8-7f76569c8b7b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E02_730910.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11D-A107-01 c64f2c9b-e2e4-4a48-94e8-7f76569c8b7b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E02_730910.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11D-A107-01 c64f2c9b-e2e4-4a48-94e8-7f76569c8b7b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E02_730910.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11D-A10A-05 0f375ffa-66bf-4310-89e9-793c4d1815ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11D-A10A-05 0f375ffa-66bf-4310-89e9-793c4d1815ed DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486018_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11D-A10A-05 0f375ffa-66bf-4310-89e9-793c4d1815ed DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486018_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11D-A10A-05 0f375ffa-66bf-4310-89e9-793c4d1815ed DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-AR-A0U3-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11D-A10A-05 0f375ffa-66bf-4310-89e9-793c4d1815ed DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-AR-A0U3-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11D-A10G-09 c8251555-77d3-4a20-9cc0-f7df0fda5955 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11D-A10G-09 c8251555-77d3-4a20-9cc0-f7df0fda5955 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11D-A10G-09 c8251555-77d3-4a20-9cc0-f7df0fda5955 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11R-A108-13 a9b1f3dd-6037-4eb9-a129-54c7ff7a2632 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11R-A108-13 a9b1f3dd-6037-4eb9-a129-54c7ff7a2632 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AR-A0U3-01A-11R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11R-A108-13 a9b1f3dd-6037-4eb9-a129-54c7ff7a2632 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AR-A0U3-01A-11R-A108-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11R-A109-07 b36b5a17-972f-442a-84a0-469099a619ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11R-A109-07 b36b5a17-972f-442a-84a0-469099a619ec Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012313_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11R-A109-07 b36b5a17-972f-442a-84a0-469099a619ec Expression-Genes AgilentG4502A_07_3 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_826840.TCGA-AR-A0U3-01A-11R-A109-07.110913_UNC14-SN744_0165_BD0DCHABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11R-A109-07 b36b5a17-972f-442a-84a0-469099a619ec RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_826879.TCGA-AR-A0U3-01A-11R-A109-07.110913_UNC14-SN744_0165_BD0DCHABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11R-A109-07 b36b5a17-972f-442a-84a0-469099a619ec RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_826999.TCGA-AR-A0U3-01A-11R-A109-07.110913_UNC14-SN744_0165_BD0DCHABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-01A TCGA-AR-A0U3-01A-11X-A10H-09 f0c0eabe-573b-4756-b720-c29dae1b3b00 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-10A TCGA-AR-A0U3-10A-01D-A106-02 b2d399fe-202f-4bef-a4cb-7e6c06205ac8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-10A TCGA-AR-A0U3-10A-01D-A107-01 27ad7766-9298-4fcc-8f43-29fb97df324d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-10A TCGA-AR-A0U3-10A-01D-A107-01 27ad7766-9298-4fcc-8f43-29fb97df324d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B08_730942.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-AR-A0U3 TCGA-AR-A0U3-10A TCGA-AR-A0U3-10A-01D-A107-01 27ad7766-9298-4fcc-8f43-29fb97df324d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B08_730942.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-10A TCGA-AR-A0U3-10A-01D-A107-01 27ad7766-9298-4fcc-8f43-29fb97df324d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B08_730942.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-10A TCGA-AR-A0U3-10A-01D-A107-01 27ad7766-9298-4fcc-8f43-29fb97df324d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B08_730942.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-10A TCGA-AR-A0U3-10A-01D-A107-01 27ad7766-9298-4fcc-8f43-29fb97df324d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B08_730942.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-10A TCGA-AR-A0U3-10A-01D-A107-01 27ad7766-9298-4fcc-8f43-29fb97df324d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B08_730942.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-10A TCGA-AR-A0U3-10A-01D-A107-01 27ad7766-9298-4fcc-8f43-29fb97df324d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B08_730942.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-10A TCGA-AR-A0U3-10A-01D-A107-01 27ad7766-9298-4fcc-8f43-29fb97df324d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B08_730942.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-10A TCGA-AR-A0U3-10A-01D-A10G-09 264507ec-fd44-4bf0-94aa-abbe52c03810 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-10A TCGA-AR-A0U3-10A-01D-A10G-09 264507ec-fd44-4bf0-94aa-abbe52c03810 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-10A TCGA-AR-A0U3-10A-01D-A10G-09 264507ec-fd44-4bf0-94aa-abbe52c03810 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0U3 TCGA-AR-A0U3-10A TCGA-AR-A0U3-10A-01X-A10H-09 9732cc02-9c54-457a-8f96-f6ea9f563c36 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11D-A106-02 8b66db52-896a-40d4-8aa5-3fe1ed87b680 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11D-A107-01 753d28b1-7ff1-4211-beaf-6966e9ce0d18 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11D-A107-01 753d28b1-7ff1-4211-beaf-6966e9ce0d18 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B11_731062.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11D-A107-01 753d28b1-7ff1-4211-beaf-6966e9ce0d18 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B11_731062.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11D-A107-01 753d28b1-7ff1-4211-beaf-6966e9ce0d18 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B11_731062.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11D-A107-01 753d28b1-7ff1-4211-beaf-6966e9ce0d18 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B11_731062.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11D-A107-01 753d28b1-7ff1-4211-beaf-6966e9ce0d18 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B11_731062.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11D-A107-01 753d28b1-7ff1-4211-beaf-6966e9ce0d18 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B11_731062.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11D-A107-01 753d28b1-7ff1-4211-beaf-6966e9ce0d18 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B11_731062.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11D-A107-01 753d28b1-7ff1-4211-beaf-6966e9ce0d18 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B11_731062.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11D-A10A-05 74bfd233-b6c4-45ba-95f7-178dbd01226e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11D-A10A-05 74bfd233-b6c4-45ba-95f7-178dbd01226e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486029_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11D-A10A-05 74bfd233-b6c4-45ba-95f7-178dbd01226e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486029_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11D-A10A-05 74bfd233-b6c4-45ba-95f7-178dbd01226e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-AR-A0U4-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11D-A10A-05 74bfd233-b6c4-45ba-95f7-178dbd01226e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-AR-A0U4-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11D-A10G-09 6bd9ff1d-05d8-4d3e-8414-86f263368415 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11D-A117-09 ed064e31-8fae-4f9c-8455-d7517f94e16b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11D-A117-09 ed064e31-8fae-4f9c-8455-d7517f94e16b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11D-A117-09 ed064e31-8fae-4f9c-8455-d7517f94e16b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11R-A108-13 50f69783-25d1-401e-9962-a02946a1dd2b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11R-A108-13 50f69783-25d1-401e-9962-a02946a1dd2b miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AR-A0U4-01A-11R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11R-A108-13 50f69783-25d1-401e-9962-a02946a1dd2b miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-AR-A0U4-01A-11R-A108-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11R-A109-07 ee7156b6-f469-402c-8f63-f4c2f6913db1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11R-A109-07 ee7156b6-f469-402c-8f63-f4c2f6913db1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012373_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11R-A109-07 ee7156b6-f469-402c-8f63-f4c2f6913db1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012373_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11R-A109-07 ee7156b6-f469-402c-8f63-f4c2f6913db1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012373_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11R-A109-07 ee7156b6-f469-402c-8f63-f4c2f6913db1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_466583.TCGA-AR-A0U4-01A-11R-A109-07.110506_UNC9-SN296_0179_AB0BEFABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11R-A109-07 ee7156b6-f469-402c-8f63-f4c2f6913db1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_466628.TCGA-AR-A0U4-01A-11R-A109-07.110506_UNC9-SN296_0179_AB0BEFABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11R-A109-07 ee7156b6-f469-402c-8f63-f4c2f6913db1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_466690.TCGA-AR-A0U4-01A-11R-A109-07.110506_UNC9-SN296_0179_AB0BEFABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-01A TCGA-AR-A0U4-01A-11X-A10H-09 9a993460-7a3d-4c5d-a9ca-9057864f19a3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-10A TCGA-AR-A0U4-10A-01D-A106-02 52b68fcb-21aa-497d-ab04-98825454d6f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-10A TCGA-AR-A0U4-10A-01D-A107-01 5cad481f-9a67-4ce1-8c4f-c458f74226a7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-10A TCGA-AR-A0U4-10A-01D-A107-01 5cad481f-9a67-4ce1-8c4f-c458f74226a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C01_730970.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-AR-A0U4 TCGA-AR-A0U4-10A TCGA-AR-A0U4-10A-01D-A107-01 5cad481f-9a67-4ce1-8c4f-c458f74226a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C01_730970.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-10A TCGA-AR-A0U4-10A-01D-A107-01 5cad481f-9a67-4ce1-8c4f-c458f74226a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C01_730970.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-10A TCGA-AR-A0U4-10A-01D-A107-01 5cad481f-9a67-4ce1-8c4f-c458f74226a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C01_730970.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-10A TCGA-AR-A0U4-10A-01D-A107-01 5cad481f-9a67-4ce1-8c4f-c458f74226a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C01_730970.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-10A TCGA-AR-A0U4-10A-01D-A107-01 5cad481f-9a67-4ce1-8c4f-c458f74226a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C01_730970.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-10A TCGA-AR-A0U4-10A-01D-A107-01 5cad481f-9a67-4ce1-8c4f-c458f74226a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C01_730970.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-10A TCGA-AR-A0U4-10A-01D-A107-01 5cad481f-9a67-4ce1-8c4f-c458f74226a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C01_730970.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-10A TCGA-AR-A0U4-10A-01D-A10G-09 f279d365-3140-4503-83de-745895f48c48 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-10A TCGA-AR-A0U4-10A-01D-A10G-09 f279d365-3140-4503-83de-745895f48c48 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-10A TCGA-AR-A0U4-10A-01D-A10G-09 f279d365-3140-4503-83de-745895f48c48 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A0U4 TCGA-AR-A0U4-10A TCGA-AR-A0U4-10A-01X-A10H-09 ee263078-4b51-4613-b9ca-d20375f45c87 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-AR-A0U4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-01A TCGA-AR-A1AH-01A-11D-A129-02 2e474ac6-d33d-4a74-8590-b234eb75ef08 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-01A TCGA-AR-A1AH-01A-11D-A12A-01 1d7e40a7-9af9-45db-9586-9f8a3f6a1824 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-01A TCGA-AR-A1AH-01A-11D-A12A-01 1d7e40a7-9af9-45db-9586-9f8a3f6a1824 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F12_741392.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-AR-A1AH TCGA-AR-A1AH-01A TCGA-AR-A1AH-01A-11D-A12A-01 1d7e40a7-9af9-45db-9586-9f8a3f6a1824 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F12_741392.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-01A TCGA-AR-A1AH-01A-11D-A12A-01 1d7e40a7-9af9-45db-9586-9f8a3f6a1824 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F12_741392.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-01A TCGA-AR-A1AH-01A-11D-A12A-01 1d7e40a7-9af9-45db-9586-9f8a3f6a1824 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F12_741392.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-01A TCGA-AR-A1AH-01A-11D-A12A-01 1d7e40a7-9af9-45db-9586-9f8a3f6a1824 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F12_741392.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-01A TCGA-AR-A1AH-01A-11D-A12A-01 1d7e40a7-9af9-45db-9586-9f8a3f6a1824 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F12_741392.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-01A TCGA-AR-A1AH-01A-11D-A12B-09 ff4a0f5a-9f30-4a2b-9915-62f2df5ad155 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-01A TCGA-AR-A1AH-01A-11D-A12B-09 ff4a0f5a-9f30-4a2b-9915-62f2df5ad155 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-01A TCGA-AR-A1AH-01A-11D-A12E-05 8e51ec5a-3a7d-4083-9e3d-5ca733f56150 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-01A TCGA-AR-A1AH-01A-11D-A12E-05 8e51ec5a-3a7d-4083-9e3d-5ca733f56150 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-AR-A1AH-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-01A TCGA-AR-A1AH-01A-11D-A12E-05 8e51ec5a-3a7d-4083-9e3d-5ca733f56150 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-AR-A1AH-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-01A TCGA-AR-A1AH-01A-11D-A12E-05 8e51ec5a-3a7d-4083-9e3d-5ca733f56150 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-AR-A1AH-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-01A TCGA-AR-A1AH-01A-11R-A12C-13 f0c6868d-ee17-4c8e-af29-fad80fe115aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-01A TCGA-AR-A1AH-01A-11R-A12C-13 f0c6868d-ee17-4c8e-af29-fad80fe115aa miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AH-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-01A TCGA-AR-A1AH-01A-11R-A12C-13 f0c6868d-ee17-4c8e-af29-fad80fe115aa miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AH-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-01A TCGA-AR-A1AH-01A-11R-A12D-07 ff0d7627-cec2-42e7-891b-cba5f42e3272 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-01A TCGA-AR-A1AH-01A-11R-A12D-07 ff0d7627-cec2-42e7-891b-cba5f42e3272 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012864_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-01A TCGA-AR-A1AH-01A-11R-A12D-07 ff0d7627-cec2-42e7-891b-cba5f42e3272 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012864_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-01A TCGA-AR-A1AH-01A-11R-A12D-07 ff0d7627-cec2-42e7-891b-cba5f42e3272 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012864_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-01A TCGA-AR-A1AH-01A-11R-A12D-07 ff0d7627-cec2-42e7-891b-cba5f42e3272 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_705863.TCGA-AR-A1AH-01A-11R-A12D-07.110628_UNC10-SN254_0239_BD0CTRABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-01A TCGA-AR-A1AH-01A-11R-A12D-07 ff0d7627-cec2-42e7-891b-cba5f42e3272 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_706233.TCGA-AR-A1AH-01A-11R-A12D-07.110628_UNC10-SN254_0239_BD0CTRABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-01A TCGA-AR-A1AH-01A-11R-A12D-07 ff0d7627-cec2-42e7-891b-cba5f42e3272 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_706419.TCGA-AR-A1AH-01A-11R-A12D-07.110628_UNC10-SN254_0239_BD0CTRABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-01A TCGA-AR-A1AH-01A-11W-A12S-09 ad891e4b-4fcc-460d-850a-9c3f1fb104a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-10A TCGA-AR-A1AH-10A-01D-A129-02 68a0377f-d8c1-4320-823a-f6afab74eb3c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-10A TCGA-AR-A1AH-10A-01D-A12A-01 c2862afd-779f-4295-b13e-3124cd3f6e2a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-10A TCGA-AR-A1AH-10A-01D-A12A-01 c2862afd-779f-4295-b13e-3124cd3f6e2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H11_741450.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-AR-A1AH TCGA-AR-A1AH-10A TCGA-AR-A1AH-10A-01D-A12A-01 c2862afd-779f-4295-b13e-3124cd3f6e2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H11_741450.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-10A TCGA-AR-A1AH-10A-01D-A12A-01 c2862afd-779f-4295-b13e-3124cd3f6e2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H11_741450.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-10A TCGA-AR-A1AH-10A-01D-A12A-01 c2862afd-779f-4295-b13e-3124cd3f6e2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H11_741450.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-10A TCGA-AR-A1AH-10A-01D-A12A-01 c2862afd-779f-4295-b13e-3124cd3f6e2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H11_741450.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-10A TCGA-AR-A1AH-10A-01D-A12A-01 c2862afd-779f-4295-b13e-3124cd3f6e2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H11_741450.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-10A TCGA-AR-A1AH-10A-01D-A12A-01 c2862afd-779f-4295-b13e-3124cd3f6e2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H11_741450.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-10A TCGA-AR-A1AH-10A-01D-A12A-01 c2862afd-779f-4295-b13e-3124cd3f6e2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H11_741450.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-10A TCGA-AR-A1AH-10A-01D-A12B-09 430fb469-2c87-469e-8d23-0473caeefab3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-10A TCGA-AR-A1AH-10A-01D-A12B-09 430fb469-2c87-469e-8d23-0473caeefab3 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AH TCGA-AR-A1AH-10A TCGA-AR-A1AH-10A-01W-A12S-09 826598f2-e1e0-478c-96f6-2b40e5a81b98 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-01A TCGA-AR-A1AI-01A-11D-A12M-02 b06edfe8-7945-415e-8b08-5dbdc766eb7b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-01A TCGA-AR-A1AI-01A-11D-A12N-01 68564280-daf0-4bbb-9aa0-79493b39231b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-01A TCGA-AR-A1AI-01A-11D-A12N-01 68564280-daf0-4bbb-9aa0-79493b39231b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F07_747934.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AI TCGA-AR-A1AI-01A TCGA-AR-A1AI-01A-11D-A12N-01 68564280-daf0-4bbb-9aa0-79493b39231b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F07_747934.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-01A TCGA-AR-A1AI-01A-11D-A12N-01 68564280-daf0-4bbb-9aa0-79493b39231b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F07_747934.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-01A TCGA-AR-A1AI-01A-11D-A12N-01 68564280-daf0-4bbb-9aa0-79493b39231b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F07_747934.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-01A TCGA-AR-A1AI-01A-11D-A12N-01 68564280-daf0-4bbb-9aa0-79493b39231b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F07_747934.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-01A TCGA-AR-A1AI-01A-11D-A12N-01 68564280-daf0-4bbb-9aa0-79493b39231b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F07_747934.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-01A TCGA-AR-A1AI-01A-11D-A12N-01 68564280-daf0-4bbb-9aa0-79493b39231b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F07_747934.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-01A TCGA-AR-A1AI-01A-11D-A12N-01 68564280-daf0-4bbb-9aa0-79493b39231b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F07_747934.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-01A TCGA-AR-A1AI-01A-11D-A12Q-09 842846ea-881c-4d79-88d2-fc1703c58350 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-01A TCGA-AR-A1AI-01A-11D-A12Q-09 842846ea-881c-4d79-88d2-fc1703c58350 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-01A TCGA-AR-A1AI-01A-11D-A12R-05 5e983701-6898-4669-a090-649282131fb6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-01A TCGA-AR-A1AI-01A-11D-A12R-05 5e983701-6898-4669-a090-649282131fb6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324037_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-01A TCGA-AR-A1AI-01A-11D-A12R-05 5e983701-6898-4669-a090-649282131fb6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324037_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-01A TCGA-AR-A1AI-01A-11D-A12R-05 5e983701-6898-4669-a090-649282131fb6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-AR-A1AI-01A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-01A TCGA-AR-A1AI-01A-11D-A12R-05 5e983701-6898-4669-a090-649282131fb6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-AR-A1AI-01A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-01A TCGA-AR-A1AI-01A-11R-A12O-13 07a7fe3b-c640-4b55-b8aa-bda4cf2e30bc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-01A TCGA-AR-A1AI-01A-11R-A12O-13 07a7fe3b-c640-4b55-b8aa-bda4cf2e30bc miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AI-01A-11R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-01A TCGA-AR-A1AI-01A-11R-A12O-13 07a7fe3b-c640-4b55-b8aa-bda4cf2e30bc miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AI-01A-11R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-01A TCGA-AR-A1AI-01A-11R-A12P-07 52ff562f-6a13-435a-acab-16a064633b1d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-01A TCGA-AR-A1AI-01A-11R-A12P-07 52ff562f-6a13-435a-acab-16a064633b1d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012959_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-01A TCGA-AR-A1AI-01A-11R-A12P-07 52ff562f-6a13-435a-acab-16a064633b1d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012959_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-01A TCGA-AR-A1AI-01A-11R-A12P-07 52ff562f-6a13-435a-acab-16a064633b1d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012959_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-01A TCGA-AR-A1AI-01A-11W-A14O-09 f8d5d16b-e262-459e-b1d0-e25735e390c2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-10A TCGA-AR-A1AI-10A-01D-A12M-02 ba7d866d-9a25-4b08-8b26-c0f1ecf2dbda Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-10A TCGA-AR-A1AI-10A-01D-A12N-01 504a8743-0a58-4eda-b77c-3838e00abe0a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-10A TCGA-AR-A1AI-10A-01D-A12N-01 504a8743-0a58-4eda-b77c-3838e00abe0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D07_747936.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AI TCGA-AR-A1AI-10A TCGA-AR-A1AI-10A-01D-A12N-01 504a8743-0a58-4eda-b77c-3838e00abe0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D07_747936.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-10A TCGA-AR-A1AI-10A-01D-A12N-01 504a8743-0a58-4eda-b77c-3838e00abe0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D07_747936.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-10A TCGA-AR-A1AI-10A-01D-A12N-01 504a8743-0a58-4eda-b77c-3838e00abe0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D07_747936.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-10A TCGA-AR-A1AI-10A-01D-A12N-01 504a8743-0a58-4eda-b77c-3838e00abe0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D07_747936.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-10A TCGA-AR-A1AI-10A-01D-A12N-01 504a8743-0a58-4eda-b77c-3838e00abe0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D07_747936.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-10A TCGA-AR-A1AI-10A-01D-A12N-01 504a8743-0a58-4eda-b77c-3838e00abe0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D07_747936.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-10A TCGA-AR-A1AI-10A-01D-A12N-01 504a8743-0a58-4eda-b77c-3838e00abe0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D07_747936.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-10A TCGA-AR-A1AI-10A-01D-A12Q-09 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-10A TCGA-AR-A1AI-10A-01D-A12Q-09 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AI TCGA-AR-A1AI-10A TCGA-AR-A1AI-10A-01W-A14O-09 57901b90-e7a2-49fa-8462-ad6fab72deb8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-01A TCGA-AR-A1AJ-01A-21D-A12M-02 b1c97b99-9b19-4fff-a570-c320cb25ed8a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-01A TCGA-AR-A1AJ-01A-21D-A12N-01 146bbf8b-4047-4e89-9463-abba54e8d992 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-01A TCGA-AR-A1AJ-01A-21D-A12N-01 146bbf8b-4047-4e89-9463-abba54e8d992 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F11_747938.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AJ TCGA-AR-A1AJ-01A TCGA-AR-A1AJ-01A-21D-A12N-01 146bbf8b-4047-4e89-9463-abba54e8d992 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F11_747938.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-01A TCGA-AR-A1AJ-01A-21D-A12N-01 146bbf8b-4047-4e89-9463-abba54e8d992 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F11_747938.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-01A TCGA-AR-A1AJ-01A-21D-A12N-01 146bbf8b-4047-4e89-9463-abba54e8d992 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F11_747938.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-01A TCGA-AR-A1AJ-01A-21D-A12N-01 146bbf8b-4047-4e89-9463-abba54e8d992 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F11_747938.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-01A TCGA-AR-A1AJ-01A-21D-A12N-01 146bbf8b-4047-4e89-9463-abba54e8d992 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F11_747938.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-01A TCGA-AR-A1AJ-01A-21D-A12N-01 146bbf8b-4047-4e89-9463-abba54e8d992 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F11_747938.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-01A TCGA-AR-A1AJ-01A-21D-A12N-01 146bbf8b-4047-4e89-9463-abba54e8d992 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F11_747938.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-01A TCGA-AR-A1AJ-01A-21D-A12Q-09 4e1f9084-4729-4b3f-b036-6226d64fd25b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-01A TCGA-AR-A1AJ-01A-21D-A12Q-09 4e1f9084-4729-4b3f-b036-6226d64fd25b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-01A TCGA-AR-A1AJ-01A-21D-A12R-05 ffeb12a8-d32c-4cde-adfa-0942bea7159f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-01A TCGA-AR-A1AJ-01A-21D-A12R-05 ffeb12a8-d32c-4cde-adfa-0942bea7159f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324070_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-01A TCGA-AR-A1AJ-01A-21D-A12R-05 ffeb12a8-d32c-4cde-adfa-0942bea7159f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324070_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-01A TCGA-AR-A1AJ-01A-21D-A12R-05 ffeb12a8-d32c-4cde-adfa-0942bea7159f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-AR-A1AJ-01A-21D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-01A TCGA-AR-A1AJ-01A-21D-A12R-05 ffeb12a8-d32c-4cde-adfa-0942bea7159f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-AR-A1AJ-01A-21D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-01A TCGA-AR-A1AJ-01A-21R-A12O-13 6240f2ae-47c0-40af-9a92-c4385ef6daec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-01A TCGA-AR-A1AJ-01A-21R-A12O-13 6240f2ae-47c0-40af-9a92-c4385ef6daec miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AJ-01A-21R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-01A TCGA-AR-A1AJ-01A-21R-A12O-13 6240f2ae-47c0-40af-9a92-c4385ef6daec miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AJ-01A-21R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-01A TCGA-AR-A1AJ-01A-21R-A12P-07 98703904-572d-4220-b959-a1293a2e1c33 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-01A TCGA-AR-A1AJ-01A-21R-A12P-07 98703904-572d-4220-b959-a1293a2e1c33 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013047_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-01A TCGA-AR-A1AJ-01A-21R-A12P-07 98703904-572d-4220-b959-a1293a2e1c33 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013047_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-01A TCGA-AR-A1AJ-01A-21R-A12P-07 98703904-572d-4220-b959-a1293a2e1c33 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013047_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-01A TCGA-AR-A1AJ-01A-21W-A14O-09 78455ac7-e391-4ddf-a58d-e6da3849c7da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-10A TCGA-AR-A1AJ-10A-01D-A12M-02 4d67e3b1-5aec-428d-a740-6a47e479085f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-10A TCGA-AR-A1AJ-10A-01D-A12N-01 2d1732ef-06da-4097-98b9-42243ad79838 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-10A TCGA-AR-A1AJ-10A-01D-A12N-01 2d1732ef-06da-4097-98b9-42243ad79838 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H03_747992.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AJ TCGA-AR-A1AJ-10A TCGA-AR-A1AJ-10A-01D-A12N-01 2d1732ef-06da-4097-98b9-42243ad79838 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H03_747992.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-10A TCGA-AR-A1AJ-10A-01D-A12N-01 2d1732ef-06da-4097-98b9-42243ad79838 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H03_747992.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-10A TCGA-AR-A1AJ-10A-01D-A12N-01 2d1732ef-06da-4097-98b9-42243ad79838 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H03_747992.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-10A TCGA-AR-A1AJ-10A-01D-A12N-01 2d1732ef-06da-4097-98b9-42243ad79838 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H03_747992.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-10A TCGA-AR-A1AJ-10A-01D-A12N-01 2d1732ef-06da-4097-98b9-42243ad79838 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H03_747992.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-10A TCGA-AR-A1AJ-10A-01D-A12N-01 2d1732ef-06da-4097-98b9-42243ad79838 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H03_747992.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-10A TCGA-AR-A1AJ-10A-01D-A12N-01 2d1732ef-06da-4097-98b9-42243ad79838 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H03_747992.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-10A TCGA-AR-A1AJ-10A-01D-A12Q-09 63ee3781-4578-4d19-88e4-c8785fc7987e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-10A TCGA-AR-A1AJ-10A-01D-A12Q-09 63ee3781-4578-4d19-88e4-c8785fc7987e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AJ TCGA-AR-A1AJ-10A TCGA-AR-A1AJ-10A-01W-A14O-09 592729da-ccdf-4065-9e1a-25ac6b1ba9d1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-01A TCGA-AR-A1AK-01A-21D-A12M-02 d7e9af34-500b-4f6d-89cb-2944dc5cf7a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-01A TCGA-AR-A1AK-01A-21D-A12N-01 a972d2c7-e885-4dfe-b56c-d0468d154419 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-01A TCGA-AR-A1AK-01A-21D-A12N-01 a972d2c7-e885-4dfe-b56c-d0468d154419 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G03_747872.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AK TCGA-AR-A1AK-01A TCGA-AR-A1AK-01A-21D-A12N-01 a972d2c7-e885-4dfe-b56c-d0468d154419 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G03_747872.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-01A TCGA-AR-A1AK-01A-21D-A12N-01 a972d2c7-e885-4dfe-b56c-d0468d154419 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G03_747872.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-01A TCGA-AR-A1AK-01A-21D-A12N-01 a972d2c7-e885-4dfe-b56c-d0468d154419 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G03_747872.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-01A TCGA-AR-A1AK-01A-21D-A12N-01 a972d2c7-e885-4dfe-b56c-d0468d154419 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G03_747872.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-01A TCGA-AR-A1AK-01A-21D-A12N-01 a972d2c7-e885-4dfe-b56c-d0468d154419 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G03_747872.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-01A TCGA-AR-A1AK-01A-21D-A12N-01 a972d2c7-e885-4dfe-b56c-d0468d154419 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G03_747872.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-01A TCGA-AR-A1AK-01A-21D-A12N-01 a972d2c7-e885-4dfe-b56c-d0468d154419 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G03_747872.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-01A TCGA-AR-A1AK-01A-21D-A12Q-09 52f7c22f-84cb-4263-93bf-1ae8cf8abbd2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-01A TCGA-AR-A1AK-01A-21D-A12Q-09 52f7c22f-84cb-4263-93bf-1ae8cf8abbd2 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-01A TCGA-AR-A1AK-01A-21D-A12R-05 260c414c-6a9d-440d-9b18-d6023442a73f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-01A TCGA-AR-A1AK-01A-21D-A12R-05 260c414c-6a9d-440d-9b18-d6023442a73f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324035_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-01A TCGA-AR-A1AK-01A-21D-A12R-05 260c414c-6a9d-440d-9b18-d6023442a73f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324035_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-01A TCGA-AR-A1AK-01A-21D-A12R-05 260c414c-6a9d-440d-9b18-d6023442a73f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-AR-A1AK-01A-21D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-01A TCGA-AR-A1AK-01A-21D-A12R-05 260c414c-6a9d-440d-9b18-d6023442a73f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-AR-A1AK-01A-21D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-01A TCGA-AR-A1AK-01A-21R-A12O-13 6abe8c95-08e2-4423-a1d0-4a865056e282 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-01A TCGA-AR-A1AK-01A-21R-A12O-13 6abe8c95-08e2-4423-a1d0-4a865056e282 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AK-01A-21R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-01A TCGA-AR-A1AK-01A-21R-A12O-13 6abe8c95-08e2-4423-a1d0-4a865056e282 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AK-01A-21R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-01A TCGA-AR-A1AK-01A-21R-A12P-07 a3568fd6-4b6d-4507-9c59-1788834d3a75 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-01A TCGA-AR-A1AK-01A-21R-A12P-07 a3568fd6-4b6d-4507-9c59-1788834d3a75 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013054_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-01A TCGA-AR-A1AK-01A-21R-A12P-07 a3568fd6-4b6d-4507-9c59-1788834d3a75 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013054_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-01A TCGA-AR-A1AK-01A-21R-A12P-07 a3568fd6-4b6d-4507-9c59-1788834d3a75 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013054_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-01A TCGA-AR-A1AK-01A-21W-A14O-09 ca571456-5689-48ff-a778-403e4ba8c0ad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-10A TCGA-AR-A1AK-10A-01D-A12M-02 d818c9ff-aa2f-4f6e-9de9-4d7f445b3ce2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-10A TCGA-AR-A1AK-10A-01D-A12N-01 d24e5179-78e6-4f61-8d69-05a57c536e0c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-10A TCGA-AR-A1AK-10A-01D-A12N-01 d24e5179-78e6-4f61-8d69-05a57c536e0c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B07_747866.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AK TCGA-AR-A1AK-10A TCGA-AR-A1AK-10A-01D-A12N-01 d24e5179-78e6-4f61-8d69-05a57c536e0c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B07_747866.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-10A TCGA-AR-A1AK-10A-01D-A12N-01 d24e5179-78e6-4f61-8d69-05a57c536e0c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B07_747866.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-10A TCGA-AR-A1AK-10A-01D-A12N-01 d24e5179-78e6-4f61-8d69-05a57c536e0c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B07_747866.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-10A TCGA-AR-A1AK-10A-01D-A12N-01 d24e5179-78e6-4f61-8d69-05a57c536e0c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B07_747866.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-10A TCGA-AR-A1AK-10A-01D-A12N-01 d24e5179-78e6-4f61-8d69-05a57c536e0c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B07_747866.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-10A TCGA-AR-A1AK-10A-01D-A12N-01 d24e5179-78e6-4f61-8d69-05a57c536e0c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B07_747866.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-10A TCGA-AR-A1AK-10A-01D-A12N-01 d24e5179-78e6-4f61-8d69-05a57c536e0c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B07_747866.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-10A TCGA-AR-A1AK-10A-01D-A12Q-09 eccf2a84-ba31-455f-942a-2c1dc7b08cc8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-10A TCGA-AR-A1AK-10A-01D-A12Q-09 eccf2a84-ba31-455f-942a-2c1dc7b08cc8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AK TCGA-AR-A1AK-10A TCGA-AR-A1AK-10A-01W-A14O-09 dec8e985-572d-4a3e-8252-3106d6ae6dd3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21D-A12M-02 5d96ff7d-787f-483d-95cf-a3507d443fa5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21D-A12N-01 9c918c56-fd45-443d-8137-00685de9f0c3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21D-A12N-01 9c918c56-fd45-443d-8137-00685de9f0c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G04_747978.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21D-A12N-01 9c918c56-fd45-443d-8137-00685de9f0c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G04_747978.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21D-A12N-01 9c918c56-fd45-443d-8137-00685de9f0c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G04_747978.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21D-A12N-01 9c918c56-fd45-443d-8137-00685de9f0c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G04_747978.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21D-A12N-01 9c918c56-fd45-443d-8137-00685de9f0c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G04_747978.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21D-A12N-01 9c918c56-fd45-443d-8137-00685de9f0c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G04_747978.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21D-A12N-01 9c918c56-fd45-443d-8137-00685de9f0c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G04_747978.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21D-A12N-01 9c918c56-fd45-443d-8137-00685de9f0c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G04_747978.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21D-A12Q-09 8495c66e-dc95-4eae-909b-b51b8bc84889 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21D-A12Q-09 8495c66e-dc95-4eae-909b-b51b8bc84889 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21D-A12R-05 08358ec0-a233-44c5-b00a-5148a5f1f03c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21D-A12R-05 08358ec0-a233-44c5-b00a-5148a5f1f03c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324072_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21D-A12R-05 08358ec0-a233-44c5-b00a-5148a5f1f03c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324072_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21D-A12R-05 08358ec0-a233-44c5-b00a-5148a5f1f03c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-AR-A1AL-01A-21D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21D-A12R-05 08358ec0-a233-44c5-b00a-5148a5f1f03c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-AR-A1AL-01A-21D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21R-A12O-13 2d0b6c55-ccd0-4da9-bb6c-997b4aff97f2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21R-A12O-13 2d0b6c55-ccd0-4da9-bb6c-997b4aff97f2 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AL-01A-21R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21R-A12O-13 2d0b6c55-ccd0-4da9-bb6c-997b4aff97f2 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AL-01A-21R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21R-A12P-07 ad602633-fdd7-4bf1-b3ac-e1c8e0a02934 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21R-A12P-07 ad602633-fdd7-4bf1-b3ac-e1c8e0a02934 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013058_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21R-A12P-07 ad602633-fdd7-4bf1-b3ac-e1c8e0a02934 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013058_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21R-A12P-07 ad602633-fdd7-4bf1-b3ac-e1c8e0a02934 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013058_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21R-A12P-07 ad602633-fdd7-4bf1-b3ac-e1c8e0a02934 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407847.TCGA-AR-A1AL-01A-21R-A12P-07.110725_UNC11-SN627_0129_BC040FABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21R-A12P-07 ad602633-fdd7-4bf1-b3ac-e1c8e0a02934 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408010.TCGA-AR-A1AL-01A-21R-A12P-07.110725_UNC11-SN627_0129_BC040FABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21R-A12P-07 ad602633-fdd7-4bf1-b3ac-e1c8e0a02934 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408090.TCGA-AR-A1AL-01A-21R-A12P-07.110725_UNC11-SN627_0129_BC040FABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-01A TCGA-AR-A1AL-01A-21W-A14O-09 2dfeec26-8264-4552-890e-190b281579f5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-10A TCGA-AR-A1AL-10A-01D-A12M-02 081b3dac-f7ea-4eae-be9e-7adee1c701fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-10A TCGA-AR-A1AL-10A-01D-A12N-01 33988cb5-0182-42e0-8ed4-3edb83bd4cfb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-10A TCGA-AR-A1AL-10A-01D-A12N-01 33988cb5-0182-42e0-8ed4-3edb83bd4cfb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G05_747932.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AL TCGA-AR-A1AL-10A TCGA-AR-A1AL-10A-01D-A12N-01 33988cb5-0182-42e0-8ed4-3edb83bd4cfb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G05_747932.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-10A TCGA-AR-A1AL-10A-01D-A12N-01 33988cb5-0182-42e0-8ed4-3edb83bd4cfb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G05_747932.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-10A TCGA-AR-A1AL-10A-01D-A12N-01 33988cb5-0182-42e0-8ed4-3edb83bd4cfb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G05_747932.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-10A TCGA-AR-A1AL-10A-01D-A12N-01 33988cb5-0182-42e0-8ed4-3edb83bd4cfb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G05_747932.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-10A TCGA-AR-A1AL-10A-01D-A12N-01 33988cb5-0182-42e0-8ed4-3edb83bd4cfb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G05_747932.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-10A TCGA-AR-A1AL-10A-01D-A12N-01 33988cb5-0182-42e0-8ed4-3edb83bd4cfb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G05_747932.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-10A TCGA-AR-A1AL-10A-01D-A12N-01 33988cb5-0182-42e0-8ed4-3edb83bd4cfb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G05_747932.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-10A TCGA-AR-A1AL-10A-01D-A12Q-09 c3cd25a8-9372-4861-91a1-bace1cdc7b54 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-10A TCGA-AR-A1AL-10A-01D-A12Q-09 c3cd25a8-9372-4861-91a1-bace1cdc7b54 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AL TCGA-AR-A1AL-10A TCGA-AR-A1AL-10A-01W-A14O-09 4a8042f0-a0c4-4ddb-bef4-f0b00cb5a0de Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11D-A12M-02 ee200c16-5bc9-4b82-ac54-5d1a1e611267 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11D-A12N-01 cc0c2c46-bf0a-4a5d-b441-55037838b7d5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11D-A12N-01 cc0c2c46-bf0a-4a5d-b441-55037838b7d5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E07_747944.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11D-A12N-01 cc0c2c46-bf0a-4a5d-b441-55037838b7d5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E07_747944.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11D-A12N-01 cc0c2c46-bf0a-4a5d-b441-55037838b7d5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E07_747944.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11D-A12N-01 cc0c2c46-bf0a-4a5d-b441-55037838b7d5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E07_747944.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11D-A12N-01 cc0c2c46-bf0a-4a5d-b441-55037838b7d5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E07_747944.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11D-A12N-01 cc0c2c46-bf0a-4a5d-b441-55037838b7d5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E07_747944.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11D-A12N-01 cc0c2c46-bf0a-4a5d-b441-55037838b7d5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E07_747944.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11D-A12N-01 cc0c2c46-bf0a-4a5d-b441-55037838b7d5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E07_747944.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11D-A12Q-09 9c879ced-92e8-4292-9b24-46005acab0f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11D-A12Q-09 9c879ced-92e8-4292-9b24-46005acab0f4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11D-A12R-05 957de156-c5e1-4696-89e2-12b8182159e6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11D-A12R-05 957de156-c5e1-4696-89e2-12b8182159e6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324072_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11D-A12R-05 957de156-c5e1-4696-89e2-12b8182159e6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324072_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11D-A12R-05 957de156-c5e1-4696-89e2-12b8182159e6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-AR-A1AN-01A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11D-A12R-05 957de156-c5e1-4696-89e2-12b8182159e6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-AR-A1AN-01A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11R-A12O-13 837cc39f-9201-458d-8ab3-1ba9eeab0023 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11R-A12O-13 837cc39f-9201-458d-8ab3-1ba9eeab0023 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AN-01A-11R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11R-A12O-13 837cc39f-9201-458d-8ab3-1ba9eeab0023 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AN-01A-11R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11R-A12P-07 9046caf3-bbfe-4554-b9d2-11b333ad7704 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11R-A12P-07 9046caf3-bbfe-4554-b9d2-11b333ad7704 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013065_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11R-A12P-07 9046caf3-bbfe-4554-b9d2-11b333ad7704 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013065_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11R-A12P-07 9046caf3-bbfe-4554-b9d2-11b333ad7704 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013065_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11R-A12P-07 9046caf3-bbfe-4554-b9d2-11b333ad7704 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407861.TCGA-AR-A1AN-01A-11R-A12P-07.110725_UNC11-SN627_0129_BC040FABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11R-A12P-07 9046caf3-bbfe-4554-b9d2-11b333ad7704 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408013.TCGA-AR-A1AN-01A-11R-A12P-07.110725_UNC11-SN627_0129_BC040FABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11R-A12P-07 9046caf3-bbfe-4554-b9d2-11b333ad7704 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408088.TCGA-AR-A1AN-01A-11R-A12P-07.110725_UNC11-SN627_0129_BC040FABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-01A TCGA-AR-A1AN-01A-11W-A14O-09 9c035506-599f-46bb-ae4a-fff6d92741a8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-10A TCGA-AR-A1AN-10A-01D-A12M-02 71fa6fd6-3ebf-44bd-9d55-326fd76b75d3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-10A TCGA-AR-A1AN-10A-01D-A12N-01 1a34933c-cba9-4732-afa6-3958e9505392 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-10A TCGA-AR-A1AN-10A-01D-A12N-01 1a34933c-cba9-4732-afa6-3958e9505392 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G08_747946.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AN TCGA-AR-A1AN-10A TCGA-AR-A1AN-10A-01D-A12N-01 1a34933c-cba9-4732-afa6-3958e9505392 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G08_747946.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-10A TCGA-AR-A1AN-10A-01D-A12N-01 1a34933c-cba9-4732-afa6-3958e9505392 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G08_747946.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-10A TCGA-AR-A1AN-10A-01D-A12N-01 1a34933c-cba9-4732-afa6-3958e9505392 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G08_747946.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-10A TCGA-AR-A1AN-10A-01D-A12N-01 1a34933c-cba9-4732-afa6-3958e9505392 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G08_747946.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-10A TCGA-AR-A1AN-10A-01D-A12N-01 1a34933c-cba9-4732-afa6-3958e9505392 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G08_747946.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-10A TCGA-AR-A1AN-10A-01D-A12N-01 1a34933c-cba9-4732-afa6-3958e9505392 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G08_747946.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-10A TCGA-AR-A1AN-10A-01D-A12N-01 1a34933c-cba9-4732-afa6-3958e9505392 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G08_747946.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-10A TCGA-AR-A1AN-10A-01D-A12Q-09 69a46a7b-70d9-4789-b6ee-9a5971644d7e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-10A TCGA-AR-A1AN-10A-01D-A12Q-09 69a46a7b-70d9-4789-b6ee-9a5971644d7e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AN TCGA-AR-A1AN-10A TCGA-AR-A1AN-10A-01W-A14O-09 e0b0c61e-bcca-428b-8ee8-4f9ed85fb80d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11D-A12M-02 c33a41f3-30bb-4a2e-9e84-5fc866cdbf7b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11D-A12N-01 e18c22cb-6ef7-44c4-8bca-a3d70a3be9ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11D-A12N-01 e18c22cb-6ef7-44c4-8bca-a3d70a3be9ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G11_747892.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11D-A12N-01 e18c22cb-6ef7-44c4-8bca-a3d70a3be9ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G11_747892.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11D-A12N-01 e18c22cb-6ef7-44c4-8bca-a3d70a3be9ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G11_747892.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11D-A12N-01 e18c22cb-6ef7-44c4-8bca-a3d70a3be9ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G11_747892.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11D-A12N-01 e18c22cb-6ef7-44c4-8bca-a3d70a3be9ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G11_747892.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11D-A12N-01 e18c22cb-6ef7-44c4-8bca-a3d70a3be9ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G11_747892.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11D-A12N-01 e18c22cb-6ef7-44c4-8bca-a3d70a3be9ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G11_747892.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11D-A12N-01 e18c22cb-6ef7-44c4-8bca-a3d70a3be9ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G11_747892.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11D-A12Q-09 b841db95-2eff-4181-8d44-3cde2f2f9e70 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11D-A12Q-09 b841db95-2eff-4181-8d44-3cde2f2f9e70 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11D-A12R-05 16b43895-61d3-49cd-b752-5d7faa57ea91 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11D-A12R-05 16b43895-61d3-49cd-b752-5d7faa57ea91 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324035_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11D-A12R-05 16b43895-61d3-49cd-b752-5d7faa57ea91 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324035_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11D-A12R-05 16b43895-61d3-49cd-b752-5d7faa57ea91 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-AR-A1AO-01A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11D-A12R-05 16b43895-61d3-49cd-b752-5d7faa57ea91 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-AR-A1AO-01A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11R-A12O-13 bffd9c0a-8fdf-458e-bc46-6ea7ad39cf00 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11R-A12O-13 bffd9c0a-8fdf-458e-bc46-6ea7ad39cf00 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AO-01A-11R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11R-A12O-13 bffd9c0a-8fdf-458e-bc46-6ea7ad39cf00 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AO-01A-11R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11R-A12P-07 56183330-0700-46d7-b45f-6d915ae587fa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11R-A12P-07 56183330-0700-46d7-b45f-6d915ae587fa Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012939_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11R-A12P-07 56183330-0700-46d7-b45f-6d915ae587fa Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012939_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11R-A12P-07 56183330-0700-46d7-b45f-6d915ae587fa Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012939_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11R-A12P-07 56183330-0700-46d7-b45f-6d915ae587fa RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441060.TCGA-AR-A1AO-01A-11R-A12P-07.110706_UNC12-SN629_0106_AC043GABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11R-A12P-07 56183330-0700-46d7-b45f-6d915ae587fa RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441144.TCGA-AR-A1AO-01A-11R-A12P-07.110706_UNC12-SN629_0106_AC043GABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11R-A12P-07 56183330-0700-46d7-b45f-6d915ae587fa RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441298.TCGA-AR-A1AO-01A-11R-A12P-07.110706_UNC12-SN629_0106_AC043GABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-01A TCGA-AR-A1AO-01A-11W-A14O-09 eb7270c7-8d19-4df8-bc32-68f983abbf4c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-10A TCGA-AR-A1AO-10A-01D-A12M-02 3e0a57b9-66f9-42a4-b47b-253b44a04e50 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-10A TCGA-AR-A1AO-10A-01D-A12N-01 1894104d-96d1-475d-b8aa-288f47c47228 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-10A TCGA-AR-A1AO-10A-01D-A12N-01 1894104d-96d1-475d-b8aa-288f47c47228 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A07_747984.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AO TCGA-AR-A1AO-10A TCGA-AR-A1AO-10A-01D-A12N-01 1894104d-96d1-475d-b8aa-288f47c47228 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A07_747984.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-10A TCGA-AR-A1AO-10A-01D-A12N-01 1894104d-96d1-475d-b8aa-288f47c47228 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A07_747984.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-10A TCGA-AR-A1AO-10A-01D-A12N-01 1894104d-96d1-475d-b8aa-288f47c47228 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A07_747984.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-10A TCGA-AR-A1AO-10A-01D-A12N-01 1894104d-96d1-475d-b8aa-288f47c47228 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A07_747984.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-10A TCGA-AR-A1AO-10A-01D-A12N-01 1894104d-96d1-475d-b8aa-288f47c47228 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A07_747984.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-10A TCGA-AR-A1AO-10A-01D-A12N-01 1894104d-96d1-475d-b8aa-288f47c47228 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A07_747984.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-10A TCGA-AR-A1AO-10A-01D-A12N-01 1894104d-96d1-475d-b8aa-288f47c47228 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A07_747984.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-10A TCGA-AR-A1AO-10A-01D-A12Q-09 1569c114-c779-4135-9978-99aa3ac67035 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-10A TCGA-AR-A1AO-10A-01D-A12Q-09 1569c114-c779-4135-9978-99aa3ac67035 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AO TCGA-AR-A1AO-10A TCGA-AR-A1AO-10A-01W-A14O-09 2be8ee85-3c2c-4168-b97b-424c0075a41c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-01A TCGA-AR-A1AP-01A-11D-A12M-02 0dc958a4-c3aa-4479-9828-c1371587744c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-01A TCGA-AR-A1AP-01A-11D-A12N-01 81e9397d-c246-4d14-a6e9-f3e068e8c43f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-01A TCGA-AR-A1AP-01A-11D-A12N-01 81e9397d-c246-4d14-a6e9-f3e068e8c43f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A09_747960.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AP TCGA-AR-A1AP-01A TCGA-AR-A1AP-01A-11D-A12N-01 81e9397d-c246-4d14-a6e9-f3e068e8c43f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A09_747960.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-01A TCGA-AR-A1AP-01A-11D-A12N-01 81e9397d-c246-4d14-a6e9-f3e068e8c43f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A09_747960.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-01A TCGA-AR-A1AP-01A-11D-A12N-01 81e9397d-c246-4d14-a6e9-f3e068e8c43f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A09_747960.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-01A TCGA-AR-A1AP-01A-11D-A12N-01 81e9397d-c246-4d14-a6e9-f3e068e8c43f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A09_747960.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-01A TCGA-AR-A1AP-01A-11D-A12N-01 81e9397d-c246-4d14-a6e9-f3e068e8c43f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A09_747960.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-01A TCGA-AR-A1AP-01A-11D-A12N-01 81e9397d-c246-4d14-a6e9-f3e068e8c43f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A09_747960.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-01A TCGA-AR-A1AP-01A-11D-A12N-01 81e9397d-c246-4d14-a6e9-f3e068e8c43f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A09_747960.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-01A TCGA-AR-A1AP-01A-11D-A12Q-09 597e37c9-f0c9-4839-800e-6e9519ec3add Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-01A TCGA-AR-A1AP-01A-11D-A12Q-09 597e37c9-f0c9-4839-800e-6e9519ec3add Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-01A TCGA-AR-A1AP-01A-11D-A12R-05 8a31b279-db03-4523-b73b-1227416a3508 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-01A TCGA-AR-A1AP-01A-11D-A12R-05 8a31b279-db03-4523-b73b-1227416a3508 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324037_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-01A TCGA-AR-A1AP-01A-11D-A12R-05 8a31b279-db03-4523-b73b-1227416a3508 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324037_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-01A TCGA-AR-A1AP-01A-11D-A12R-05 8a31b279-db03-4523-b73b-1227416a3508 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-AR-A1AP-01A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-01A TCGA-AR-A1AP-01A-11D-A12R-05 8a31b279-db03-4523-b73b-1227416a3508 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-AR-A1AP-01A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-01A TCGA-AR-A1AP-01A-11R-A12O-13 4f8665e8-e783-49cc-9273-08eab39de514 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-01A TCGA-AR-A1AP-01A-11R-A12O-13 4f8665e8-e783-49cc-9273-08eab39de514 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AP-01A-11R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-01A TCGA-AR-A1AP-01A-11R-A12O-13 4f8665e8-e783-49cc-9273-08eab39de514 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AP-01A-11R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-01A TCGA-AR-A1AP-01A-11R-A12P-07 8b0f1897-20d8-492d-9ea9-22f771bbae9d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-01A TCGA-AR-A1AP-01A-11R-A12P-07 8b0f1897-20d8-492d-9ea9-22f771bbae9d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012947_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-01A TCGA-AR-A1AP-01A-11R-A12P-07 8b0f1897-20d8-492d-9ea9-22f771bbae9d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012947_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-01A TCGA-AR-A1AP-01A-11R-A12P-07 8b0f1897-20d8-492d-9ea9-22f771bbae9d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012947_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-01A TCGA-AR-A1AP-01A-11W-A14O-09 541a2449-32cf-4abc-80ee-28a4e2ff767d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-10A TCGA-AR-A1AP-10A-01D-A12M-02 1550d972-a131-410d-8d35-7dcedd03d58d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-10A TCGA-AR-A1AP-10A-01D-A12N-01 1d744cd6-c78b-4b1b-8376-fecaf5d485fb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-10A TCGA-AR-A1AP-10A-01D-A12N-01 1d744cd6-c78b-4b1b-8376-fecaf5d485fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C12_747976.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AP TCGA-AR-A1AP-10A TCGA-AR-A1AP-10A-01D-A12N-01 1d744cd6-c78b-4b1b-8376-fecaf5d485fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C12_747976.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-10A TCGA-AR-A1AP-10A-01D-A12N-01 1d744cd6-c78b-4b1b-8376-fecaf5d485fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C12_747976.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-10A TCGA-AR-A1AP-10A-01D-A12N-01 1d744cd6-c78b-4b1b-8376-fecaf5d485fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C12_747976.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-10A TCGA-AR-A1AP-10A-01D-A12N-01 1d744cd6-c78b-4b1b-8376-fecaf5d485fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C12_747976.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-10A TCGA-AR-A1AP-10A-01D-A12N-01 1d744cd6-c78b-4b1b-8376-fecaf5d485fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C12_747976.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-10A TCGA-AR-A1AP-10A-01D-A12N-01 1d744cd6-c78b-4b1b-8376-fecaf5d485fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C12_747976.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-10A TCGA-AR-A1AP-10A-01D-A12N-01 1d744cd6-c78b-4b1b-8376-fecaf5d485fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C12_747976.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-10A TCGA-AR-A1AP-10A-01D-A12Q-09 db345a86-cbeb-4514-b490-b730372b90dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-10A TCGA-AR-A1AP-10A-01D-A12Q-09 db345a86-cbeb-4514-b490-b730372b90dc Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AP TCGA-AR-A1AP-10A TCGA-AR-A1AP-10A-01W-A14O-09 0e8e4057-00fb-4b0a-9302-267c407ff55f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11D-A12M-02 8fff8874-c439-486b-8f12-194e087ac99c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11D-A12N-01 ffbdf887-0c9a-40c0-971a-61eb2bb70e2a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11D-A12N-01 ffbdf887-0c9a-40c0-971a-61eb2bb70e2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F03_747980.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11D-A12N-01 ffbdf887-0c9a-40c0-971a-61eb2bb70e2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F03_747980.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11D-A12N-01 ffbdf887-0c9a-40c0-971a-61eb2bb70e2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F03_747980.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11D-A12N-01 ffbdf887-0c9a-40c0-971a-61eb2bb70e2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F03_747980.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11D-A12N-01 ffbdf887-0c9a-40c0-971a-61eb2bb70e2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F03_747980.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11D-A12N-01 ffbdf887-0c9a-40c0-971a-61eb2bb70e2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F03_747980.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11D-A12N-01 ffbdf887-0c9a-40c0-971a-61eb2bb70e2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F03_747980.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11D-A12N-01 ffbdf887-0c9a-40c0-971a-61eb2bb70e2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F03_747980.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11D-A12Q-09 88ff7728-ecc9-4ec5-817e-4793619ab5a4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11D-A12Q-09 88ff7728-ecc9-4ec5-817e-4793619ab5a4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11D-A12R-05 050bd2bc-bca4-4a4a-8664-926aef4d61e6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11D-A12R-05 050bd2bc-bca4-4a4a-8664-926aef4d61e6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324035_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11D-A12R-05 050bd2bc-bca4-4a4a-8664-926aef4d61e6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324035_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11D-A12R-05 050bd2bc-bca4-4a4a-8664-926aef4d61e6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-AR-A1AQ-01A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11D-A12R-05 050bd2bc-bca4-4a4a-8664-926aef4d61e6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-AR-A1AQ-01A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11R-A12O-13 9d0ee233-d85a-4407-93af-090d9528fd0f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11R-A12O-13 9d0ee233-d85a-4407-93af-090d9528fd0f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AQ-01A-11R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11R-A12O-13 9d0ee233-d85a-4407-93af-090d9528fd0f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AQ-01A-11R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11R-A12P-07 747f56be-2fdd-4eb8-99a7-34afd923d8e1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11R-A12P-07 747f56be-2fdd-4eb8-99a7-34afd923d8e1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012952_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11R-A12P-07 747f56be-2fdd-4eb8-99a7-34afd923d8e1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012952_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11R-A12P-07 747f56be-2fdd-4eb8-99a7-34afd923d8e1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012952_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11R-A12P-07 747f56be-2fdd-4eb8-99a7-34afd923d8e1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441045.TCGA-AR-A1AQ-01A-11R-A12P-07.110706_UNC12-SN629_0106_AC043GABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11R-A12P-07 747f56be-2fdd-4eb8-99a7-34afd923d8e1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441148.TCGA-AR-A1AQ-01A-11R-A12P-07.110706_UNC12-SN629_0106_AC043GABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11R-A12P-07 747f56be-2fdd-4eb8-99a7-34afd923d8e1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441185.TCGA-AR-A1AQ-01A-11R-A12P-07.110706_UNC12-SN629_0106_AC043GABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-01A TCGA-AR-A1AQ-01A-11W-A14O-09 b5eaa3f3-7767-409b-8309-abe8d6c1f125 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-10A TCGA-AR-A1AQ-10A-01D-A12M-02 0b878e52-cfd3-4cb8-a80b-d0f2e56ddeeb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-10A TCGA-AR-A1AQ-10A-01D-A12N-01 a19e2ceb-8da0-4e96-9fae-4ee47c4a1732 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-10A TCGA-AR-A1AQ-10A-01D-A12N-01 a19e2ceb-8da0-4e96-9fae-4ee47c4a1732 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D04_747896.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AQ TCGA-AR-A1AQ-10A TCGA-AR-A1AQ-10A-01D-A12N-01 a19e2ceb-8da0-4e96-9fae-4ee47c4a1732 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D04_747896.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-10A TCGA-AR-A1AQ-10A-01D-A12N-01 a19e2ceb-8da0-4e96-9fae-4ee47c4a1732 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D04_747896.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-10A TCGA-AR-A1AQ-10A-01D-A12N-01 a19e2ceb-8da0-4e96-9fae-4ee47c4a1732 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D04_747896.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-10A TCGA-AR-A1AQ-10A-01D-A12N-01 a19e2ceb-8da0-4e96-9fae-4ee47c4a1732 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D04_747896.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-10A TCGA-AR-A1AQ-10A-01D-A12N-01 a19e2ceb-8da0-4e96-9fae-4ee47c4a1732 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D04_747896.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-10A TCGA-AR-A1AQ-10A-01D-A12N-01 a19e2ceb-8da0-4e96-9fae-4ee47c4a1732 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D04_747896.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-10A TCGA-AR-A1AQ-10A-01D-A12N-01 a19e2ceb-8da0-4e96-9fae-4ee47c4a1732 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D04_747896.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-10A TCGA-AR-A1AQ-10A-01D-A12Q-09 3f1960e3-339f-42e6-a925-fa21d1d6e2a5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-10A TCGA-AR-A1AQ-10A-01D-A12Q-09 3f1960e3-339f-42e6-a925-fa21d1d6e2a5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AQ TCGA-AR-A1AQ-10A TCGA-AR-A1AQ-10A-01W-A14O-09 71f8c19f-fdfb-4aee-951e-2e13c0ebb7de Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31D-A133-02 05c45162-6c94-4a15-accc-b6239451064c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31D-A134-01 c7976361-e689-44f1-9e5a-2a07064f2f95 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31D-A134-01 c7976361-e689-44f1-9e5a-2a07064f2f95 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D03_755830.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31D-A134-01 c7976361-e689-44f1-9e5a-2a07064f2f95 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D03_755830.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31D-A134-01 c7976361-e689-44f1-9e5a-2a07064f2f95 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D03_755830.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31D-A134-01 c7976361-e689-44f1-9e5a-2a07064f2f95 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D03_755830.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31D-A134-01 c7976361-e689-44f1-9e5a-2a07064f2f95 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D03_755830.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31D-A134-01 c7976361-e689-44f1-9e5a-2a07064f2f95 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D03_755830.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31D-A134-01 c7976361-e689-44f1-9e5a-2a07064f2f95 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D03_755830.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31D-A134-01 c7976361-e689-44f1-9e5a-2a07064f2f95 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D03_755830.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31D-A135-09 008ba655-a0a3-42c4-8c72-f1341365ef02 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31D-A135-09 008ba655-a0a3-42c4-8c72-f1341365ef02 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31D-A138-05 7b017050-97d4-45bb-bf83-c89dab812e44 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31D-A138-05 7b017050-97d4-45bb-bf83-c89dab812e44 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324071_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31D-A138-05 7b017050-97d4-45bb-bf83-c89dab812e44 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324071_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31D-A138-05 7b017050-97d4-45bb-bf83-c89dab812e44 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-2.TCGA-AR-A1AR-01A-31D-A138-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0 103 07-NOV-11 05.19.10.670000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31D-A138-05 7b017050-97d4-45bb-bf83-c89dab812e44 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-3.TCGA-AR-A1AR-01A-31D-A138-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0 103 07-NOV-11 05.59.32.897000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31R-A136-13 0ffb3f3d-f20e-43d1-9867-7dc75ac24f3b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31R-A136-13 0ffb3f3d-f20e-43d1-9867-7dc75ac24f3b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AR-01A-31R-A136-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31R-A136-13 0ffb3f3d-f20e-43d1-9867-7dc75ac24f3b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AR-01A-31R-A136-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31R-A137-07 6d066a72-f59f-45a8-ab90-216000b36da4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31R-A137-07 6d066a72-f59f-45a8-ab90-216000b36da4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013073_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 103 24-JUL-11 07.52.05.474000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31R-A137-07 6d066a72-f59f-45a8-ab90-216000b36da4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013073_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 103 24-JUL-11 07.49.44.366000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31R-A137-07 6d066a72-f59f-45a8-ab90-216000b36da4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013073_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 103 24-JUL-11 07.50.27.960000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31R-A137-07 6d066a72-f59f-45a8-ab90-216000b36da4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_707546.TCGA-AR-A1AR-01A-31R-A137-07.110725_UNC15-SN850_0099_AD0DETABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31R-A137-07 6d066a72-f59f-45a8-ab90-216000b36da4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_707568.TCGA-AR-A1AR-01A-31R-A137-07.110725_UNC15-SN850_0099_AD0DETABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31R-A137-07 6d066a72-f59f-45a8-ab90-216000b36da4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_707697.TCGA-AR-A1AR-01A-31R-A137-07.110725_UNC15-SN850_0099_AD0DETABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-01A TCGA-AR-A1AR-01A-31W-A14P-09 c1fd82a9-f75f-4297-b2c2-ec91c40a57f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-10A TCGA-AR-A1AR-10A-01D-A133-02 84df0f82-69c4-4cd3-a4bd-f40d2d6ef916 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-10A TCGA-AR-A1AR-10A-01D-A134-01 2708315c-d58a-42d7-a914-d6299aa74936 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-10A TCGA-AR-A1AR-10A-01D-A134-01 2708315c-d58a-42d7-a914-d6299aa74936 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H07_755760.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-AR-A1AR TCGA-AR-A1AR-10A TCGA-AR-A1AR-10A-01D-A134-01 2708315c-d58a-42d7-a914-d6299aa74936 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H07_755760.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-AR-A1AR TCGA-AR-A1AR-10A TCGA-AR-A1AR-10A-01D-A134-01 2708315c-d58a-42d7-a914-d6299aa74936 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H07_755760.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-AR-A1AR TCGA-AR-A1AR-10A TCGA-AR-A1AR-10A-01D-A134-01 2708315c-d58a-42d7-a914-d6299aa74936 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H07_755760.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-AR-A1AR TCGA-AR-A1AR-10A TCGA-AR-A1AR-10A-01D-A134-01 2708315c-d58a-42d7-a914-d6299aa74936 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H07_755760.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-AR-A1AR TCGA-AR-A1AR-10A TCGA-AR-A1AR-10A-01D-A134-01 2708315c-d58a-42d7-a914-d6299aa74936 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H07_755760.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-AR-A1AR TCGA-AR-A1AR-10A TCGA-AR-A1AR-10A-01D-A134-01 2708315c-d58a-42d7-a914-d6299aa74936 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H07_755760.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-AR-A1AR TCGA-AR-A1AR-10A TCGA-AR-A1AR-10A-01D-A134-01 2708315c-d58a-42d7-a914-d6299aa74936 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H07_755760.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-10A TCGA-AR-A1AR-10A-01D-A135-09 0395a62f-3f37-4068-bab6-4c1d29cef2d5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-10A TCGA-AR-A1AR-10A-01D-A135-09 0395a62f-3f37-4068-bab6-4c1d29cef2d5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AR TCGA-AR-A1AR-10A TCGA-AR-A1AR-10A-01W-A14P-09 281bfaa0-3f3c-412f-a3f8-76f1aa6e53ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-01A TCGA-AR-A1AS-01A-11D-A12M-02 9dff0c2d-c46f-4bf5-a0ae-7bcce2cbaa15 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-01A TCGA-AR-A1AS-01A-11D-A12N-01 8fcff679-66ba-4348-93ed-eb7166302c3e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-01A TCGA-AR-A1AS-01A-11D-A12N-01 8fcff679-66ba-4348-93ed-eb7166302c3e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H01_748052.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AS TCGA-AR-A1AS-01A TCGA-AR-A1AS-01A-11D-A12N-01 8fcff679-66ba-4348-93ed-eb7166302c3e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H01_748052.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-01A TCGA-AR-A1AS-01A-11D-A12N-01 8fcff679-66ba-4348-93ed-eb7166302c3e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H01_748052.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-01A TCGA-AR-A1AS-01A-11D-A12N-01 8fcff679-66ba-4348-93ed-eb7166302c3e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H01_748052.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-01A TCGA-AR-A1AS-01A-11D-A12N-01 8fcff679-66ba-4348-93ed-eb7166302c3e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H01_748052.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-01A TCGA-AR-A1AS-01A-11D-A12N-01 8fcff679-66ba-4348-93ed-eb7166302c3e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H01_748052.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-01A TCGA-AR-A1AS-01A-11D-A12N-01 8fcff679-66ba-4348-93ed-eb7166302c3e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H01_748052.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-01A TCGA-AR-A1AS-01A-11D-A12N-01 8fcff679-66ba-4348-93ed-eb7166302c3e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H01_748052.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-01A TCGA-AR-A1AS-01A-11D-A12Q-09 3f26f93c-e11a-4ec9-b73b-98fcadc209f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-01A TCGA-AR-A1AS-01A-11D-A12Q-09 3f26f93c-e11a-4ec9-b73b-98fcadc209f4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-01A TCGA-AR-A1AS-01A-11D-A12R-05 84beca09-d89b-4200-9366-aaa802370b10 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-01A TCGA-AR-A1AS-01A-11D-A12R-05 84beca09-d89b-4200-9366-aaa802370b10 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324035_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-01A TCGA-AR-A1AS-01A-11D-A12R-05 84beca09-d89b-4200-9366-aaa802370b10 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324035_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-01A TCGA-AR-A1AS-01A-11D-A12R-05 84beca09-d89b-4200-9366-aaa802370b10 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-AR-A1AS-01A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-01A TCGA-AR-A1AS-01A-11D-A12R-05 84beca09-d89b-4200-9366-aaa802370b10 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-AR-A1AS-01A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-01A TCGA-AR-A1AS-01A-11R-A12O-13 15a9bfab-a707-4d35-930a-abace770953d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-01A TCGA-AR-A1AS-01A-11R-A12O-13 15a9bfab-a707-4d35-930a-abace770953d miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AS-01A-11R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-01A TCGA-AR-A1AS-01A-11R-A12O-13 15a9bfab-a707-4d35-930a-abace770953d miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AS-01A-11R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-01A TCGA-AR-A1AS-01A-11R-A12P-07 e7b64cc3-9b2b-4938-9896-84b640d1586f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-01A TCGA-AR-A1AS-01A-11R-A12P-07 e7b64cc3-9b2b-4938-9896-84b640d1586f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012960_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-01A TCGA-AR-A1AS-01A-11R-A12P-07 e7b64cc3-9b2b-4938-9896-84b640d1586f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012960_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-01A TCGA-AR-A1AS-01A-11R-A12P-07 e7b64cc3-9b2b-4938-9896-84b640d1586f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012960_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-01A TCGA-AR-A1AS-01A-11W-A14O-09 64cb6340-2bb0-4cf6-81da-7fb213bdf66f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-10A TCGA-AR-A1AS-10A-01D-A12M-02 1444c04f-c396-411b-b241-495425424bd8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-10A TCGA-AR-A1AS-10A-01D-A12N-01 1ea25b84-9aa2-4c65-89de-4075a23dd113 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-10A TCGA-AR-A1AS-10A-01D-A12N-01 1ea25b84-9aa2-4c65-89de-4075a23dd113 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F08_747902.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AS TCGA-AR-A1AS-10A TCGA-AR-A1AS-10A-01D-A12N-01 1ea25b84-9aa2-4c65-89de-4075a23dd113 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F08_747902.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-10A TCGA-AR-A1AS-10A-01D-A12N-01 1ea25b84-9aa2-4c65-89de-4075a23dd113 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F08_747902.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-10A TCGA-AR-A1AS-10A-01D-A12N-01 1ea25b84-9aa2-4c65-89de-4075a23dd113 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F08_747902.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-10A TCGA-AR-A1AS-10A-01D-A12N-01 1ea25b84-9aa2-4c65-89de-4075a23dd113 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F08_747902.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-10A TCGA-AR-A1AS-10A-01D-A12N-01 1ea25b84-9aa2-4c65-89de-4075a23dd113 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F08_747902.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-10A TCGA-AR-A1AS-10A-01D-A12N-01 1ea25b84-9aa2-4c65-89de-4075a23dd113 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F08_747902.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-10A TCGA-AR-A1AS-10A-01D-A12N-01 1ea25b84-9aa2-4c65-89de-4075a23dd113 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F08_747902.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-10A TCGA-AR-A1AS-10A-01D-A12Q-09 97a055bf-af49-4c79-bc12-0b3644f21638 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-10A TCGA-AR-A1AS-10A-01D-A12Q-09 97a055bf-af49-4c79-bc12-0b3644f21638 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AS TCGA-AR-A1AS-10A TCGA-AR-A1AS-10A-01W-A14O-09 a875f34c-889d-4dcb-afff-883265ab3b37 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-01A TCGA-AR-A1AT-01A-11D-A12M-02 6348d2cd-7c79-4283-ba5c-4ac79681f55b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-01A TCGA-AR-A1AT-01A-11D-A12N-01 c63914cb-6306-4da9-a678-3bf404cb6200 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-01A TCGA-AR-A1AT-01A-11D-A12Q-09 7e00d4fa-b951-44d8-8fbf-fc7b9f19772e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-01A TCGA-AR-A1AT-01A-11D-A12Q-09 7e00d4fa-b951-44d8-8fbf-fc7b9f19772e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-01A TCGA-AR-A1AT-01A-11D-A12R-05 2d41dfbd-0bf1-4d66-8e22-2579ab37d492 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-01A TCGA-AR-A1AT-01A-11D-A12R-05 2d41dfbd-0bf1-4d66-8e22-2579ab37d492 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324070_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-01A TCGA-AR-A1AT-01A-11D-A12R-05 2d41dfbd-0bf1-4d66-8e22-2579ab37d492 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324070_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-01A TCGA-AR-A1AT-01A-11D-A12R-05 2d41dfbd-0bf1-4d66-8e22-2579ab37d492 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-AR-A1AT-01A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-01A TCGA-AR-A1AT-01A-11D-A12R-05 2d41dfbd-0bf1-4d66-8e22-2579ab37d492 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-AR-A1AT-01A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-01A TCGA-AR-A1AT-01A-11R-A12O-13 c5c470c3-78f2-4318-b527-704361e72f77 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-01A TCGA-AR-A1AT-01A-11R-A12O-13 c5c470c3-78f2-4318-b527-704361e72f77 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AT-01A-11R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-01A TCGA-AR-A1AT-01A-11R-A12O-13 c5c470c3-78f2-4318-b527-704361e72f77 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AT-01A-11R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-01A TCGA-AR-A1AT-01A-11R-A12P-07 e70e1882-b4be-4ed6-9c2d-4e8c84fde633 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-01A TCGA-AR-A1AT-01A-11R-A12P-07 e70e1882-b4be-4ed6-9c2d-4e8c84fde633 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013048_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-01A TCGA-AR-A1AT-01A-11R-A12P-07 e70e1882-b4be-4ed6-9c2d-4e8c84fde633 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013048_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-01A TCGA-AR-A1AT-01A-11R-A12P-07 e70e1882-b4be-4ed6-9c2d-4e8c84fde633 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013048_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-01A TCGA-AR-A1AT-01A-11W-A14O-09 c1a75478-3d32-403d-92d9-257d48519429 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-10A TCGA-AR-A1AT-10A-01D-A12M-02 36ce44c9-fd6c-4d95-a0d1-170910a1b9f5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-10A TCGA-AR-A1AT-10A-01D-A12N-01 ce23e309-fa1a-4b53-9392-185a0d27942e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-10A TCGA-AR-A1AT-10A-01D-A12N-01 ce23e309-fa1a-4b53-9392-185a0d27942e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G01_748012.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AT TCGA-AR-A1AT-10A TCGA-AR-A1AT-10A-01D-A12N-01 ce23e309-fa1a-4b53-9392-185a0d27942e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G01_748012.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-10A TCGA-AR-A1AT-10A-01D-A12N-01 ce23e309-fa1a-4b53-9392-185a0d27942e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G01_748012.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-10A TCGA-AR-A1AT-10A-01D-A12N-01 ce23e309-fa1a-4b53-9392-185a0d27942e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G01_748012.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-10A TCGA-AR-A1AT-10A-01D-A12N-01 ce23e309-fa1a-4b53-9392-185a0d27942e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G01_748012.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-10A TCGA-AR-A1AT-10A-01D-A12N-01 ce23e309-fa1a-4b53-9392-185a0d27942e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G01_748012.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-10A TCGA-AR-A1AT-10A-01D-A12N-01 ce23e309-fa1a-4b53-9392-185a0d27942e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G01_748012.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-10A TCGA-AR-A1AT-10A-01D-A12N-01 ce23e309-fa1a-4b53-9392-185a0d27942e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G01_748012.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-10A TCGA-AR-A1AT-10A-01D-A12Q-09 f4c41f30-2984-49b6-87a7-e27893a7fc71 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-10A TCGA-AR-A1AT-10A-01D-A12Q-09 f4c41f30-2984-49b6-87a7-e27893a7fc71 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AT TCGA-AR-A1AT-10A TCGA-AR-A1AT-10A-01W-A14O-09 2a3a77d1-ea4e-4348-8525-c6ba7593e80d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-01A TCGA-AR-A1AU-01A-11D-A12M-02 e0d5e73a-dfdd-413b-a2f5-0924c17c2718 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-01A TCGA-AR-A1AU-01A-11D-A12N-01 3830d91c-48eb-4f67-9db9-1a4ff4b28c92 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-01A TCGA-AR-A1AU-01A-11D-A12N-01 3830d91c-48eb-4f67-9db9-1a4ff4b28c92 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B06_747894.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AU TCGA-AR-A1AU-01A TCGA-AR-A1AU-01A-11D-A12N-01 3830d91c-48eb-4f67-9db9-1a4ff4b28c92 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B06_747894.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-01A TCGA-AR-A1AU-01A-11D-A12N-01 3830d91c-48eb-4f67-9db9-1a4ff4b28c92 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B06_747894.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-01A TCGA-AR-A1AU-01A-11D-A12N-01 3830d91c-48eb-4f67-9db9-1a4ff4b28c92 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B06_747894.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-01A TCGA-AR-A1AU-01A-11D-A12N-01 3830d91c-48eb-4f67-9db9-1a4ff4b28c92 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B06_747894.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-01A TCGA-AR-A1AU-01A-11D-A12N-01 3830d91c-48eb-4f67-9db9-1a4ff4b28c92 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B06_747894.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-01A TCGA-AR-A1AU-01A-11D-A12N-01 3830d91c-48eb-4f67-9db9-1a4ff4b28c92 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B06_747894.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-01A TCGA-AR-A1AU-01A-11D-A12N-01 3830d91c-48eb-4f67-9db9-1a4ff4b28c92 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B06_747894.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-01A TCGA-AR-A1AU-01A-11D-A12Q-09 d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-01A TCGA-AR-A1AU-01A-11D-A12Q-09 d7cfeb04-ce20-4aab-8e5b-8a1483bcaaa5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-01A TCGA-AR-A1AU-01A-11D-A12R-05 62aa6f3f-f6b6-48dc-82af-0acf8b784e63 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-01A TCGA-AR-A1AU-01A-11D-A12R-05 62aa6f3f-f6b6-48dc-82af-0acf8b784e63 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324037_R05C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-01A TCGA-AR-A1AU-01A-11D-A12R-05 62aa6f3f-f6b6-48dc-82af-0acf8b784e63 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324037_R05C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-01A TCGA-AR-A1AU-01A-11D-A12R-05 62aa6f3f-f6b6-48dc-82af-0acf8b784e63 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-AR-A1AU-01A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-01A TCGA-AR-A1AU-01A-11D-A12R-05 62aa6f3f-f6b6-48dc-82af-0acf8b784e63 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-AR-A1AU-01A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-01A TCGA-AR-A1AU-01A-11R-A12O-13 9cf611c0-f750-4a35-a265-d725d39a3814 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-01A TCGA-AR-A1AU-01A-11R-A12O-13 9cf611c0-f750-4a35-a265-d725d39a3814 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AU-01A-11R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-01A TCGA-AR-A1AU-01A-11R-A12O-13 9cf611c0-f750-4a35-a265-d725d39a3814 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AU-01A-11R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-01A TCGA-AR-A1AU-01A-11R-A12P-07 bb07b646-1dcc-4cf5-9aae-1df150e84a84 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-01A TCGA-AR-A1AU-01A-11R-A12P-07 bb07b646-1dcc-4cf5-9aae-1df150e84a84 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013055_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-01A TCGA-AR-A1AU-01A-11R-A12P-07 bb07b646-1dcc-4cf5-9aae-1df150e84a84 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013055_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-01A TCGA-AR-A1AU-01A-11R-A12P-07 bb07b646-1dcc-4cf5-9aae-1df150e84a84 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013055_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-01A TCGA-AR-A1AU-01A-11W-A14O-09 e60fa035-2c84-4515-aad9-fc22f9960883 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-10A TCGA-AR-A1AU-10A-01D-A12M-02 dd0a6a1d-d330-430a-9a1b-90d02236b1bf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-10A TCGA-AR-A1AU-10A-01D-A12N-01 2074da9c-ea9c-4817-88fc-0dfe0ae9aea9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-10A TCGA-AR-A1AU-10A-01D-A12N-01 2074da9c-ea9c-4817-88fc-0dfe0ae9aea9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E03_748026.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AU TCGA-AR-A1AU-10A TCGA-AR-A1AU-10A-01D-A12N-01 2074da9c-ea9c-4817-88fc-0dfe0ae9aea9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E03_748026.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-10A TCGA-AR-A1AU-10A-01D-A12N-01 2074da9c-ea9c-4817-88fc-0dfe0ae9aea9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E03_748026.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-10A TCGA-AR-A1AU-10A-01D-A12N-01 2074da9c-ea9c-4817-88fc-0dfe0ae9aea9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E03_748026.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-10A TCGA-AR-A1AU-10A-01D-A12N-01 2074da9c-ea9c-4817-88fc-0dfe0ae9aea9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E03_748026.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-10A TCGA-AR-A1AU-10A-01D-A12N-01 2074da9c-ea9c-4817-88fc-0dfe0ae9aea9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E03_748026.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-10A TCGA-AR-A1AU-10A-01D-A12N-01 2074da9c-ea9c-4817-88fc-0dfe0ae9aea9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E03_748026.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-10A TCGA-AR-A1AU-10A-01D-A12N-01 2074da9c-ea9c-4817-88fc-0dfe0ae9aea9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E03_748026.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-10A TCGA-AR-A1AU-10A-01D-A12Q-09 92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-10A TCGA-AR-A1AU-10A-01D-A12Q-09 92a2cabd-4b1f-465e-8ef7-6b2cbf19fc0a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AU TCGA-AR-A1AU-10A TCGA-AR-A1AU-10A-01W-A14O-09 b43bca7c-3abe-46d9-b7b1-3cabab1c1382 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21D-A12M-02 541be88f-e1de-4164-8db8-4a467f0c2734 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21D-A12N-01 135f0af7-da27-4a64-b7a5-16c0eaa1df7a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21D-A12N-01 135f0af7-da27-4a64-b7a5-16c0eaa1df7a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H06_747964.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21D-A12N-01 135f0af7-da27-4a64-b7a5-16c0eaa1df7a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H06_747964.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21D-A12N-01 135f0af7-da27-4a64-b7a5-16c0eaa1df7a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H06_747964.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21D-A12N-01 135f0af7-da27-4a64-b7a5-16c0eaa1df7a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H06_747964.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21D-A12N-01 135f0af7-da27-4a64-b7a5-16c0eaa1df7a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H06_747964.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21D-A12N-01 135f0af7-da27-4a64-b7a5-16c0eaa1df7a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H06_747964.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21D-A12N-01 135f0af7-da27-4a64-b7a5-16c0eaa1df7a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H06_747964.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21D-A12N-01 135f0af7-da27-4a64-b7a5-16c0eaa1df7a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H06_747964.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21D-A12Q-09 0a0dd89c-5ec8-4015-9616-733e41361a64 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21D-A12Q-09 0a0dd89c-5ec8-4015-9616-733e41361a64 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21D-A12R-05 1e935125-1c65-47c2-9f00-acfd1869f781 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21D-A12R-05 1e935125-1c65-47c2-9f00-acfd1869f781 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324070_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21D-A12R-05 1e935125-1c65-47c2-9f00-acfd1869f781 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324070_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21D-A12R-05 1e935125-1c65-47c2-9f00-acfd1869f781 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-AR-A1AV-01A-21D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21D-A12R-05 1e935125-1c65-47c2-9f00-acfd1869f781 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-AR-A1AV-01A-21D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21R-A12O-13 b14e29d2-079c-404a-91b7-c322714fad48 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21R-A12O-13 b14e29d2-079c-404a-91b7-c322714fad48 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AV-01A-21R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21R-A12O-13 b14e29d2-079c-404a-91b7-c322714fad48 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AV-01A-21R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21R-A12P-07 dddfaed8-0d0e-42ba-9add-fae3cc1e5a9a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21R-A12P-07 dddfaed8-0d0e-42ba-9add-fae3cc1e5a9a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013059_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21R-A12P-07 dddfaed8-0d0e-42ba-9add-fae3cc1e5a9a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013059_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21R-A12P-07 dddfaed8-0d0e-42ba-9add-fae3cc1e5a9a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013059_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21R-A12P-07 dddfaed8-0d0e-42ba-9add-fae3cc1e5a9a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407895.TCGA-AR-A1AV-01A-21R-A12P-07.110725_UNC11-SN627_0129_BC040FABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21R-A12P-07 dddfaed8-0d0e-42ba-9add-fae3cc1e5a9a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407984.TCGA-AR-A1AV-01A-21R-A12P-07.110725_UNC11-SN627_0129_BC040FABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21R-A12P-07 dddfaed8-0d0e-42ba-9add-fae3cc1e5a9a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408014.TCGA-AR-A1AV-01A-21R-A12P-07.110725_UNC11-SN627_0129_BC040FABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-01A TCGA-AR-A1AV-01A-21W-A14O-09 eaa22111-8886-4bbd-86a8-2e3b3847f9d5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-10A TCGA-AR-A1AV-10A-01D-A12M-02 44d0a2b5-7f13-434f-888b-65b34ffb72d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-10A TCGA-AR-A1AV-10A-01D-A12N-01 6494bd1c-db29-4179-ba0c-5ceaedb69e4b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-10A TCGA-AR-A1AV-10A-01D-A12N-01 6494bd1c-db29-4179-ba0c-5ceaedb69e4b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E06_747926.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AV TCGA-AR-A1AV-10A TCGA-AR-A1AV-10A-01D-A12N-01 6494bd1c-db29-4179-ba0c-5ceaedb69e4b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E06_747926.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-10A TCGA-AR-A1AV-10A-01D-A12N-01 6494bd1c-db29-4179-ba0c-5ceaedb69e4b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E06_747926.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-10A TCGA-AR-A1AV-10A-01D-A12N-01 6494bd1c-db29-4179-ba0c-5ceaedb69e4b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E06_747926.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-10A TCGA-AR-A1AV-10A-01D-A12N-01 6494bd1c-db29-4179-ba0c-5ceaedb69e4b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E06_747926.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-10A TCGA-AR-A1AV-10A-01D-A12N-01 6494bd1c-db29-4179-ba0c-5ceaedb69e4b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E06_747926.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-10A TCGA-AR-A1AV-10A-01D-A12N-01 6494bd1c-db29-4179-ba0c-5ceaedb69e4b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E06_747926.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-10A TCGA-AR-A1AV-10A-01D-A12N-01 6494bd1c-db29-4179-ba0c-5ceaedb69e4b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E06_747926.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-10A TCGA-AR-A1AV-10A-01D-A12Q-09 77cb1c29-4009-4669-bdb6-3ec5e74b65d1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-10A TCGA-AR-A1AV-10A-01D-A12Q-09 77cb1c29-4009-4669-bdb6-3ec5e74b65d1 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AV TCGA-AR-A1AV-10A TCGA-AR-A1AV-10A-01W-A14O-09 de29f4bd-6703-4642-93a0-758ecb6e7773 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21D-A12M-02 f8b0b5b7-4579-48bb-89c0-49a57493d250 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21D-A12N-01 4fe5e02e-c89b-445d-8b84-8db10e210c86 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21D-A12N-01 4fe5e02e-c89b-445d-8b84-8db10e210c86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B12_747874.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21D-A12N-01 4fe5e02e-c89b-445d-8b84-8db10e210c86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B12_747874.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21D-A12N-01 4fe5e02e-c89b-445d-8b84-8db10e210c86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B12_747874.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21D-A12N-01 4fe5e02e-c89b-445d-8b84-8db10e210c86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B12_747874.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21D-A12N-01 4fe5e02e-c89b-445d-8b84-8db10e210c86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B12_747874.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21D-A12N-01 4fe5e02e-c89b-445d-8b84-8db10e210c86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B12_747874.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21D-A12N-01 4fe5e02e-c89b-445d-8b84-8db10e210c86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B12_747874.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21D-A12N-01 4fe5e02e-c89b-445d-8b84-8db10e210c86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B12_747874.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21D-A12Q-09 33c6b6b5-1484-4002-8f84-ba67525a8777 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21D-A12Q-09 33c6b6b5-1484-4002-8f84-ba67525a8777 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21D-A12R-05 e7898e4e-5a91-454b-8dae-640c6772bf8d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21D-A12R-05 e7898e4e-5a91-454b-8dae-640c6772bf8d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324035_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21D-A12R-05 e7898e4e-5a91-454b-8dae-640c6772bf8d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324035_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21D-A12R-05 e7898e4e-5a91-454b-8dae-640c6772bf8d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-AR-A1AW-01A-21D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21D-A12R-05 e7898e4e-5a91-454b-8dae-640c6772bf8d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-AR-A1AW-01A-21D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21R-A12O-13 89d85901-325c-4c41-b6be-a972b64f4c97 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21R-A12O-13 89d85901-325c-4c41-b6be-a972b64f4c97 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AW-01A-21R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21R-A12O-13 89d85901-325c-4c41-b6be-a972b64f4c97 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AW-01A-21R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21R-A12P-07 cff4a5bc-ba2b-47d6-8d36-6277ae991606 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21R-A12P-07 cff4a5bc-ba2b-47d6-8d36-6277ae991606 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013066_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21R-A12P-07 cff4a5bc-ba2b-47d6-8d36-6277ae991606 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013066_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21R-A12P-07 cff4a5bc-ba2b-47d6-8d36-6277ae991606 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013066_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21R-A12P-07 cff4a5bc-ba2b-47d6-8d36-6277ae991606 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437609.TCGA-AR-A1AW-01A-21R-A12P-07.110801_UNC10-SN254_0250_AC01YCABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21R-A12P-07 cff4a5bc-ba2b-47d6-8d36-6277ae991606 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437617.TCGA-AR-A1AW-01A-21R-A12P-07.110801_UNC10-SN254_0250_AC01YCABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21R-A12P-07 cff4a5bc-ba2b-47d6-8d36-6277ae991606 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437937.TCGA-AR-A1AW-01A-21R-A12P-07.110801_UNC10-SN254_0250_AC01YCABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-01A TCGA-AR-A1AW-01A-21W-A14O-09 b134f434-7ccd-4172-9c87-4fe417a1ee73 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-10A TCGA-AR-A1AW-10A-01D-A12M-02 1d4ea575-7da8-4771-bf78-081f286097f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-10A TCGA-AR-A1AW-10A-01D-A12N-01 a396e68c-d78a-435d-9d79-c8c66aaea595 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-10A TCGA-AR-A1AW-10A-01D-A12N-01 a396e68c-d78a-435d-9d79-c8c66aaea595 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G09_747972.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AW TCGA-AR-A1AW-10A TCGA-AR-A1AW-10A-01D-A12N-01 a396e68c-d78a-435d-9d79-c8c66aaea595 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G09_747972.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-10A TCGA-AR-A1AW-10A-01D-A12N-01 a396e68c-d78a-435d-9d79-c8c66aaea595 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G09_747972.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-10A TCGA-AR-A1AW-10A-01D-A12N-01 a396e68c-d78a-435d-9d79-c8c66aaea595 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G09_747972.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-10A TCGA-AR-A1AW-10A-01D-A12N-01 a396e68c-d78a-435d-9d79-c8c66aaea595 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G09_747972.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-10A TCGA-AR-A1AW-10A-01D-A12N-01 a396e68c-d78a-435d-9d79-c8c66aaea595 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G09_747972.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-10A TCGA-AR-A1AW-10A-01D-A12N-01 a396e68c-d78a-435d-9d79-c8c66aaea595 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G09_747972.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-10A TCGA-AR-A1AW-10A-01D-A12N-01 a396e68c-d78a-435d-9d79-c8c66aaea595 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G09_747972.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-10A TCGA-AR-A1AW-10A-01D-A12Q-09 e93c2d61-5212-4796-8a2c-950db804fddf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-10A TCGA-AR-A1AW-10A-01D-A12Q-09 e93c2d61-5212-4796-8a2c-950db804fddf Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AW TCGA-AR-A1AW-10A TCGA-AR-A1AW-10A-01W-A14O-09 1cbf5c49-259d-4722-98ae-56a4460f49df Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11D-A12M-02 f945b499-4289-462c-aad4-493d26b11881 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11D-A12N-01 e79dcb48-5228-42e7-8b67-1e51a68796e6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11D-A12N-01 e79dcb48-5228-42e7-8b67-1e51a68796e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G12_747916.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11D-A12N-01 e79dcb48-5228-42e7-8b67-1e51a68796e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G12_747916.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11D-A12N-01 e79dcb48-5228-42e7-8b67-1e51a68796e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G12_747916.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11D-A12N-01 e79dcb48-5228-42e7-8b67-1e51a68796e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G12_747916.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11D-A12N-01 e79dcb48-5228-42e7-8b67-1e51a68796e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G12_747916.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11D-A12N-01 e79dcb48-5228-42e7-8b67-1e51a68796e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G12_747916.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11D-A12N-01 e79dcb48-5228-42e7-8b67-1e51a68796e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G12_747916.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11D-A12N-01 e79dcb48-5228-42e7-8b67-1e51a68796e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G12_747916.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11D-A12Q-09 71a3cf72-3539-4ade-97d1-6a1bd1ee4205 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11D-A12Q-09 71a3cf72-3539-4ade-97d1-6a1bd1ee4205 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11D-A12R-05 8306cddd-9cab-4795-a19f-6d52b4e27766 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11D-A12R-05 8306cddd-9cab-4795-a19f-6d52b4e27766 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324030_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11D-A12R-05 8306cddd-9cab-4795-a19f-6d52b4e27766 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324030_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11D-A12R-05 8306cddd-9cab-4795-a19f-6d52b4e27766 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-AR-A1AX-01A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11D-A12R-05 8306cddd-9cab-4795-a19f-6d52b4e27766 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-AR-A1AX-01A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11R-A12O-13 1b0a4c3f-5ecc-47fb-b3be-1f118978aace Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11R-A12O-13 1b0a4c3f-5ecc-47fb-b3be-1f118978aace miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AX-01A-11R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11R-A12O-13 1b0a4c3f-5ecc-47fb-b3be-1f118978aace miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AX-01A-11R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11R-A12P-07 66626142-7c5c-4ed0-8ef0-f4133423f275 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11R-A12P-07 66626142-7c5c-4ed0-8ef0-f4133423f275 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012940_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11R-A12P-07 66626142-7c5c-4ed0-8ef0-f4133423f275 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012940_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11R-A12P-07 66626142-7c5c-4ed0-8ef0-f4133423f275 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012940_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11R-A12P-07 66626142-7c5c-4ed0-8ef0-f4133423f275 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441012.TCGA-AR-A1AX-01A-11R-A12P-07.110706_UNC12-SN629_0106_AC043GABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11R-A12P-07 66626142-7c5c-4ed0-8ef0-f4133423f275 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441065.TCGA-AR-A1AX-01A-11R-A12P-07.110706_UNC12-SN629_0106_AC043GABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11R-A12P-07 66626142-7c5c-4ed0-8ef0-f4133423f275 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441066.TCGA-AR-A1AX-01A-11R-A12P-07.110706_UNC12-SN629_0106_AC043GABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-01A TCGA-AR-A1AX-01A-11W-A14O-09 f1a398eb-c5a1-4f08-8eb7-3cf60dd18037 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-10A TCGA-AR-A1AX-10A-01D-A12M-02 6ccf9b26-e08b-4d1e-89f3-5036ff717639 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-10A TCGA-AR-A1AX-10A-01D-A12N-01 dc3cb65d-35ff-4790-949c-bd6c3515ec58 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-10A TCGA-AR-A1AX-10A-01D-A12N-01 dc3cb65d-35ff-4790-949c-bd6c3515ec58 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E11_747882.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AX TCGA-AR-A1AX-10A TCGA-AR-A1AX-10A-01D-A12N-01 dc3cb65d-35ff-4790-949c-bd6c3515ec58 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E11_747882.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-10A TCGA-AR-A1AX-10A-01D-A12N-01 dc3cb65d-35ff-4790-949c-bd6c3515ec58 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E11_747882.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-10A TCGA-AR-A1AX-10A-01D-A12N-01 dc3cb65d-35ff-4790-949c-bd6c3515ec58 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E11_747882.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-10A TCGA-AR-A1AX-10A-01D-A12N-01 dc3cb65d-35ff-4790-949c-bd6c3515ec58 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E11_747882.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-10A TCGA-AR-A1AX-10A-01D-A12N-01 dc3cb65d-35ff-4790-949c-bd6c3515ec58 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E11_747882.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-10A TCGA-AR-A1AX-10A-01D-A12N-01 dc3cb65d-35ff-4790-949c-bd6c3515ec58 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E11_747882.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-10A TCGA-AR-A1AX-10A-01D-A12N-01 dc3cb65d-35ff-4790-949c-bd6c3515ec58 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E11_747882.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-10A TCGA-AR-A1AX-10A-01D-A12Q-09 9bb2ccce-9687-4194-b8c5-207e5f18bc1e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-10A TCGA-AR-A1AX-10A-01D-A12Q-09 9bb2ccce-9687-4194-b8c5-207e5f18bc1e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AX TCGA-AR-A1AX-10A TCGA-AR-A1AX-10A-01W-A14O-09 7c518488-ef1a-40aa-b89b-15372ba39685 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21D-A12M-02 67341e40-3f7d-44f4-ae75-8c38ab2110fb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21D-A12N-01 dab4207f-5e33-4cbb-81af-b3f005c74c16 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21D-A12N-01 dab4207f-5e33-4cbb-81af-b3f005c74c16 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C08_747904.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21D-A12N-01 dab4207f-5e33-4cbb-81af-b3f005c74c16 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C08_747904.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21D-A12N-01 dab4207f-5e33-4cbb-81af-b3f005c74c16 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C08_747904.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21D-A12N-01 dab4207f-5e33-4cbb-81af-b3f005c74c16 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C08_747904.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21D-A12N-01 dab4207f-5e33-4cbb-81af-b3f005c74c16 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C08_747904.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21D-A12N-01 dab4207f-5e33-4cbb-81af-b3f005c74c16 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C08_747904.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21D-A12N-01 dab4207f-5e33-4cbb-81af-b3f005c74c16 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C08_747904.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21D-A12N-01 dab4207f-5e33-4cbb-81af-b3f005c74c16 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C08_747904.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21D-A12Q-09 15f90ef0-831b-40a3-98bd-ec226a9e8b26 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21D-A12Q-09 15f90ef0-831b-40a3-98bd-ec226a9e8b26 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21D-A12R-05 f0b08027-022b-4030-a49a-ed34f00798a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21D-A12R-05 f0b08027-022b-4030-a49a-ed34f00798a6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324037_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21D-A12R-05 f0b08027-022b-4030-a49a-ed34f00798a6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324037_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21D-A12R-05 f0b08027-022b-4030-a49a-ed34f00798a6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-AR-A1AY-01A-21D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21D-A12R-05 f0b08027-022b-4030-a49a-ed34f00798a6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-AR-A1AY-01A-21D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21R-A12O-13 ec2ed610-4bae-4061-b43c-78155a90e5c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21R-A12O-13 ec2ed610-4bae-4061-b43c-78155a90e5c1 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AY-01A-21R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21R-A12O-13 ec2ed610-4bae-4061-b43c-78155a90e5c1 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A1AY-01A-21R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21R-A12P-07 49c4166c-701a-4f53-8968-99aec3347214 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21R-A12P-07 49c4166c-701a-4f53-8968-99aec3347214 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012948_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21R-A12P-07 49c4166c-701a-4f53-8968-99aec3347214 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012948_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21R-A12P-07 49c4166c-701a-4f53-8968-99aec3347214 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012948_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21R-A12P-07 49c4166c-701a-4f53-8968-99aec3347214 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441009.TCGA-AR-A1AY-01A-21R-A12P-07.110706_UNC12-SN629_0106_AC043GABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21R-A12P-07 49c4166c-701a-4f53-8968-99aec3347214 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441111.TCGA-AR-A1AY-01A-21R-A12P-07.110706_UNC12-SN629_0106_AC043GABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21R-A12P-07 49c4166c-701a-4f53-8968-99aec3347214 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441133.TCGA-AR-A1AY-01A-21R-A12P-07.110706_UNC12-SN629_0106_AC043GABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-01A TCGA-AR-A1AY-01A-21W-A14O-09 4513303b-1ea7-4678-bbf3-f2248687710e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-10A TCGA-AR-A1AY-10A-01D-A12M-02 3c96a074-15c6-4a0d-9fe1-171fae3dbe8d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-10A TCGA-AR-A1AY-10A-01D-A12N-01 562abc27-6bd4-4f51-835e-375ee58a7726 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-10A TCGA-AR-A1AY-10A-01D-A12N-01 562abc27-6bd4-4f51-835e-375ee58a7726 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F01_748036.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-AR-A1AY TCGA-AR-A1AY-10A TCGA-AR-A1AY-10A-01D-A12N-01 562abc27-6bd4-4f51-835e-375ee58a7726 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F01_748036.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-10A TCGA-AR-A1AY-10A-01D-A12N-01 562abc27-6bd4-4f51-835e-375ee58a7726 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F01_748036.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-10A TCGA-AR-A1AY-10A-01D-A12N-01 562abc27-6bd4-4f51-835e-375ee58a7726 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F01_748036.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-10A TCGA-AR-A1AY-10A-01D-A12N-01 562abc27-6bd4-4f51-835e-375ee58a7726 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F01_748036.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-10A TCGA-AR-A1AY-10A-01D-A12N-01 562abc27-6bd4-4f51-835e-375ee58a7726 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F01_748036.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-10A TCGA-AR-A1AY-10A-01D-A12N-01 562abc27-6bd4-4f51-835e-375ee58a7726 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F01_748036.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-10A TCGA-AR-A1AY-10A-01D-A12N-01 562abc27-6bd4-4f51-835e-375ee58a7726 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F01_748036.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-10A TCGA-AR-A1AY-10A-01D-A12Q-09 1c6d0926-e635-4f26-97a6-642c012e930d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-10A TCGA-AR-A1AY-10A-01D-A12Q-09 1c6d0926-e635-4f26-97a6-642c012e930d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-AR-A1AY TCGA-AR-A1AY-10A TCGA-AR-A1AY-10A-01W-A14O-09 d1943c8b-1297-400d-85f1-7ca78808ab88 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-AR-A1AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-AR-A24H TCGA-AR-A24H-01A TCGA-AR-A24H-01A-11D-A165-02 03206ea9-2429-42e5-8399-671a9d7e4855 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24H TCGA-AR-A24H-01A TCGA-AR-A24H-01A-11D-A166-01 95021181-8971-4d62-acf9-9a7bd1b960f2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24H TCGA-AR-A24H-01A TCGA-AR-A24H-01A-11D-A166-01 95021181-8971-4d62-acf9-9a7bd1b960f2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C08_802358.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-AR-A24H TCGA-AR-A24H-01A TCGA-AR-A24H-01A-11D-A166-01 95021181-8971-4d62-acf9-9a7bd1b960f2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C08_802358.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24H TCGA-AR-A24H-01A TCGA-AR-A24H-01A-11D-A166-01 95021181-8971-4d62-acf9-9a7bd1b960f2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C08_802358.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24H TCGA-AR-A24H-01A TCGA-AR-A24H-01A-11D-A166-01 95021181-8971-4d62-acf9-9a7bd1b960f2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C08_802358.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24H TCGA-AR-A24H-01A TCGA-AR-A24H-01A-11D-A166-01 95021181-8971-4d62-acf9-9a7bd1b960f2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C08_802358.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24H TCGA-AR-A24H-01A TCGA-AR-A24H-01A-11D-A166-01 95021181-8971-4d62-acf9-9a7bd1b960f2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C08_802358.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24H TCGA-AR-A24H-01A TCGA-AR-A24H-01A-11D-A166-01 95021181-8971-4d62-acf9-9a7bd1b960f2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C08_802358.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24H TCGA-AR-A24H-01A TCGA-AR-A24H-01A-11D-A166-01 95021181-8971-4d62-acf9-9a7bd1b960f2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C08_802358.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-AR-A24H TCGA-AR-A24H-01A TCGA-AR-A24H-01A-11D-A167-09 6bb61dce-289d-4e39-8298-df5abe8049a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24H TCGA-AR-A24H-01A TCGA-AR-A24H-01A-11D-A16A-05 9426f5f0-f8a3-420c-98de-2864ad510105 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24H TCGA-AR-A24H-01A TCGA-AR-A24H-01A-11D-A16A-05 9426f5f0-f8a3-420c-98de-2864ad510105 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833134_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-AR-A24H TCGA-AR-A24H-01A TCGA-AR-A24H-01A-11D-A16A-05 9426f5f0-f8a3-420c-98de-2864ad510105 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24H TCGA-AR-A24H-10A TCGA-AR-A24H-10A-01D-A166-01 3413df66-0de3-4518-ab85-b8fd172ba43e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G11_802448.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-AR-A24H TCGA-AR-A24H-10A TCGA-AR-A24H-10A-01D-A166-01 3413df66-0de3-4518-ab85-b8fd172ba43e SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24K TCGA-AR-A24K-01A TCGA-AR-A24K-01A-11D-A166-01 51797bbf-7ed7-49ef-b23f-d3ba37a31ae6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E08_802364.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-AR-A24K TCGA-AR-A24K-01A TCGA-AR-A24K-01A-11D-A166-01 51797bbf-7ed7-49ef-b23f-d3ba37a31ae6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E08_802364.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24K TCGA-AR-A24K-01A TCGA-AR-A24K-01A-11D-A166-01 51797bbf-7ed7-49ef-b23f-d3ba37a31ae6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E08_802364.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24K TCGA-AR-A24K-01A TCGA-AR-A24K-01A-11D-A166-01 51797bbf-7ed7-49ef-b23f-d3ba37a31ae6 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24K TCGA-AR-A24K-10A TCGA-AR-A24K-10A-01D-A166-01 33f0ee56-ed28-4e68-9f6c-a0587874e350 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E11_802460.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-AR-A24K TCGA-AR-A24K-10A TCGA-AR-A24K-10A-01D-A166-01 33f0ee56-ed28-4e68-9f6c-a0587874e350 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E11_802460.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24K TCGA-AR-A24K-10A TCGA-AR-A24K-10A-01D-A166-01 33f0ee56-ed28-4e68-9f6c-a0587874e350 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E11_802460.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24K TCGA-AR-A24K-10A TCGA-AR-A24K-10A-01D-A166-01 33f0ee56-ed28-4e68-9f6c-a0587874e350 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24L TCGA-AR-A24L-01A TCGA-AR-A24L-01A-11D-A166-01 0d02b005-05e4-4287-b451-40a4424d1a54 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B01_802338.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-AR-A24L TCGA-AR-A24L-01A TCGA-AR-A24L-01A-11D-A166-01 0d02b005-05e4-4287-b451-40a4424d1a54 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B01_802338.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24L TCGA-AR-A24L-01A TCGA-AR-A24L-01A-11D-A166-01 0d02b005-05e4-4287-b451-40a4424d1a54 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B01_802338.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24L TCGA-AR-A24L-01A TCGA-AR-A24L-01A-11D-A166-01 0d02b005-05e4-4287-b451-40a4424d1a54 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B01_802338.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24L TCGA-AR-A24L-01A TCGA-AR-A24L-01A-11D-A166-01 0d02b005-05e4-4287-b451-40a4424d1a54 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B01_802338.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24L TCGA-AR-A24L-01A TCGA-AR-A24L-01A-11D-A166-01 0d02b005-05e4-4287-b451-40a4424d1a54 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B01_802338.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24L TCGA-AR-A24L-01A TCGA-AR-A24L-01A-11D-A166-01 0d02b005-05e4-4287-b451-40a4424d1a54 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B01_802338.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24L TCGA-AR-A24L-01A TCGA-AR-A24L-01A-11D-A166-01 0d02b005-05e4-4287-b451-40a4424d1a54 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B01_802338.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-AR-A24L TCGA-AR-A24L-01A TCGA-AR-A24L-01A-11D-A167-09 2a93298a-d272-487c-ae4a-ec385844536e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24L TCGA-AR-A24L-01A TCGA-AR-A24L-01A-11D-A16A-05 b2b93c0b-837b-4fee-bbb6-29d1ed9d0930 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24L TCGA-AR-A24L-01A TCGA-AR-A24L-01A-11D-A16A-05 b2b93c0b-837b-4fee-bbb6-29d1ed9d0930 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833159_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-AR-A24L TCGA-AR-A24L-01A TCGA-AR-A24L-01A-11D-A16A-05 b2b93c0b-837b-4fee-bbb6-29d1ed9d0930 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833159_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-AR-A24L TCGA-AR-A24L-01A TCGA-AR-A24L-01A-11D-A16A-05 b2b93c0b-837b-4fee-bbb6-29d1ed9d0930 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-2.TCGA-AR-A24L-01A-11D-A16A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0 142 07-NOV-11 04.58.21.556000000 PM TCGA-AR-A24L TCGA-AR-A24L-01A TCGA-AR-A24L-01A-11D-A16A-05 b2b93c0b-837b-4fee-bbb6-29d1ed9d0930 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-3.TCGA-AR-A24L-01A-11D-A16A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0 142 07-NOV-11 06.37.11.245000000 PM TCGA-AR-A24L TCGA-AR-A24L-01A TCGA-AR-A24L-01A-11D-A17G-09 caa22bbd-44fa-44fb-b493-93e93919da6b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24L TCGA-AR-A24L-01A TCGA-AR-A24L-01A-11R-A168-13 42eaac22-f6ed-4cfe-9c13-aaf3eb7ba240 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24L TCGA-AR-A24L-01A TCGA-AR-A24L-01A-11R-A168-13 42eaac22-f6ed-4cfe-9c13-aaf3eb7ba240 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A24L-01A-11R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A24L TCGA-AR-A24L-01A TCGA-AR-A24L-01A-11R-A168-13 42eaac22-f6ed-4cfe-9c13-aaf3eb7ba240 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A24L-01A-11R-A168-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A24L TCGA-AR-A24L-01A TCGA-AR-A24L-01A-11R-A169-07 bfa78a45-16bf-410a-816d-bd369ded91e5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24L TCGA-AR-A24L-01A TCGA-AR-A24L-01A-11R-A169-07 bfa78a45-16bf-410a-816d-bd369ded91e5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_591258.TCGA-AR-A24L-01A-11R-A169-07.110919_UNC12-SN629_0142_BB00V1ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A24L TCGA-AR-A24L-01A TCGA-AR-A24L-01A-11R-A169-07 bfa78a45-16bf-410a-816d-bd369ded91e5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_591334.TCGA-AR-A24L-01A-11R-A169-07.110919_UNC12-SN629_0142_BB00V1ABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A24L TCGA-AR-A24L-01A TCGA-AR-A24L-01A-11R-A169-07 bfa78a45-16bf-410a-816d-bd369ded91e5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_591381.TCGA-AR-A24L-01A-11R-A169-07.110919_UNC12-SN629_0142_BB00V1ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A24L TCGA-AR-A24L-01A TCGA-AR-A24L-01A-11W-A184-09 f06464d0-4e27-4d51-b942-bab16d1fa1fc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24L TCGA-AR-A24L-10A TCGA-AR-A24L-10A-01D-A165-02 349f3c51-9df3-4be2-9853-3572f235b0ee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24L TCGA-AR-A24L-10A TCGA-AR-A24L-10A-01D-A166-01 97d4b870-753c-4a17-9fb6-22a8c7596881 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F02_802452.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F02_802452.ismpolish.data.txt'. TCGA-AR-A24L TCGA-AR-A24L-10A TCGA-AR-A24L-10A-01D-A166-01 97d4b870-753c-4a17-9fb6-22a8c7596881 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F02_802452.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F02_802452.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F02_802452.ismpolish.data.txt'. TCGA-AR-A24L TCGA-AR-A24L-10A TCGA-AR-A24L-10A-01D-A166-01 97d4b870-753c-4a17-9fb6-22a8c7596881 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F02_802452.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F02_802452.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F02_802452.ismpolish.data.txt'. TCGA-AR-A24L TCGA-AR-A24L-10A TCGA-AR-A24L-10A-01D-A167-09 7bb4ec17-22de-45cf-8ec8-637526f4752b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24L TCGA-AR-A24L-10A TCGA-AR-A24L-10A-01W-A184-09 772154c4-8277-41ef-a4d0-b311d996acb2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24M TCGA-AR-A24M-01A TCGA-AR-A24M-01A-11D-A165-02 51ea1170-07a7-4288-a178-a27636c3dbbc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24M TCGA-AR-A24M-01A TCGA-AR-A24M-01A-11D-A166-01 071b569b-3b44-4a6b-ac2c-bbda7d13c501 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24M TCGA-AR-A24M-01A TCGA-AR-A24M-01A-11D-A166-01 071b569b-3b44-4a6b-ac2c-bbda7d13c501 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F04_802340.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-AR-A24M TCGA-AR-A24M-01A TCGA-AR-A24M-01A-11D-A166-01 071b569b-3b44-4a6b-ac2c-bbda7d13c501 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F04_802340.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24M TCGA-AR-A24M-01A TCGA-AR-A24M-01A-11D-A166-01 071b569b-3b44-4a6b-ac2c-bbda7d13c501 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24N TCGA-AR-A24N-01A TCGA-AR-A24N-01A-11R-A168-13 86f91db4-837f-4fb4-8043-6494e1e79495 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A24N-01A-11R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A24N TCGA-AR-A24N-01A TCGA-AR-A24N-01A-11R-A168-13 86f91db4-837f-4fb4-8043-6494e1e79495 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24N TCGA-AR-A24N-10A TCGA-AR-A24N-10A-01D-A166-01 63e824c7-395c-4c8b-b10f-318e6605e8a7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24N TCGA-AR-A24N-10A TCGA-AR-A24N-10A-01D-A166-01 63e824c7-395c-4c8b-b10f-318e6605e8a7 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F01_802418.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24T TCGA-AR-A24T-01A TCGA-AR-A24T-01A-11D-A166-01 101abe3f-d317-4f8b-9b20-042da3d22457 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F01_802418.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24T TCGA-AR-A24T-01A TCGA-AR-A24T-01A-11D-A166-01 101abe3f-d317-4f8b-9b20-042da3d22457 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F01_802418.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24T TCGA-AR-A24T-01A TCGA-AR-A24T-01A-11D-A166-01 101abe3f-d317-4f8b-9b20-042da3d22457 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F01_802418.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24T TCGA-AR-A24T-01A TCGA-AR-A24T-01A-11D-A166-01 101abe3f-d317-4f8b-9b20-042da3d22457 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F01_802418.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24T TCGA-AR-A24T-01A TCGA-AR-A24T-01A-11D-A166-01 101abe3f-d317-4f8b-9b20-042da3d22457 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F01_802418.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-AR-A24T TCGA-AR-A24T-01A TCGA-AR-A24T-01A-11D-A167-09 09991de6-2e8e-476f-987b-98d9a85dac7d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24T TCGA-AR-A24T-01A TCGA-AR-A24T-01A-11D-A16A-05 a76a36b9-ccb5-4441-85b3-79b2267430f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24T TCGA-AR-A24T-01A TCGA-AR-A24T-01A-11D-A16A-05 a76a36b9-ccb5-4441-85b3-79b2267430f4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833141_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-AR-A24T TCGA-AR-A24T-01A TCGA-AR-A24T-01A-11D-A16A-05 a76a36b9-ccb5-4441-85b3-79b2267430f4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833141_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-AR-A24T TCGA-AR-A24T-01A TCGA-AR-A24T-01A-11D-A16A-05 a76a36b9-ccb5-4441-85b3-79b2267430f4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-2.TCGA-AR-A24T-01A-11D-A16A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0 142 07-NOV-11 04.58.21.556000000 PM TCGA-AR-A24T TCGA-AR-A24T-01A TCGA-AR-A24T-01A-11D-A16A-05 a76a36b9-ccb5-4441-85b3-79b2267430f4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-3.TCGA-AR-A24T-01A-11D-A16A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0 142 07-NOV-11 06.37.11.245000000 PM TCGA-AR-A24T TCGA-AR-A24T-01A TCGA-AR-A24T-01A-11R-A168-13 f6ecc552-cba4-4059-baa3-4470e0f1fa52 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24T TCGA-AR-A24T-01A TCGA-AR-A24T-01A-11R-A168-13 f6ecc552-cba4-4059-baa3-4470e0f1fa52 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A24T-01A-11R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A24T TCGA-AR-A24T-01A TCGA-AR-A24T-01A-11R-A168-13 f6ecc552-cba4-4059-baa3-4470e0f1fa52 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A24T-01A-11R-A168-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A24T TCGA-AR-A24T-01A TCGA-AR-A24T-01A-11R-A169-07 d2e1fdf7-1ac9-49e9-a611-b15c90772bf6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24T TCGA-AR-A24T-01A TCGA-AR-A24T-01A-11R-A169-07 d2e1fdf7-1ac9-49e9-a611-b15c90772bf6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_574255.TCGA-AR-A24T-01A-11R-A169-07.110921_UNC16-SN851_0089_AB0101ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A24T TCGA-AR-A24T-01A TCGA-AR-A24T-01A-11R-A169-07 d2e1fdf7-1ac9-49e9-a611-b15c90772bf6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_574290.TCGA-AR-A24T-01A-11R-A169-07.110921_UNC16-SN851_0089_AB0101ABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A24T TCGA-AR-A24T-01A TCGA-AR-A24T-01A-11R-A169-07 d2e1fdf7-1ac9-49e9-a611-b15c90772bf6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_574324.TCGA-AR-A24T-01A-11R-A169-07.110921_UNC16-SN851_0089_AB0101ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A24T TCGA-AR-A24T-01A TCGA-AR-A24T-01A-11W-A184-09 f98466e6-2423-428d-b710-64cf74d8e63d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24T TCGA-AR-A24T-10A TCGA-AR-A24T-10A-01D-A165-02 e301c7aa-2ab7-48df-bce1-e24201a529bc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24T TCGA-AR-A24T-10A TCGA-AR-A24T-10A-01D-A166-01 5f903bcb-f85c-498c-9ca1-08f3962aded2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F03_802438.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F03_802438.ismpolish.data.txt'. TCGA-AR-A24T TCGA-AR-A24T-10A TCGA-AR-A24T-10A-01D-A166-01 5f903bcb-f85c-498c-9ca1-08f3962aded2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F03_802438.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F03_802438.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F03_802438.ismpolish.data.txt'. TCGA-AR-A24T TCGA-AR-A24T-10A TCGA-AR-A24T-10A-01D-A166-01 5f903bcb-f85c-498c-9ca1-08f3962aded2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F03_802438.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F03_802438.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F03_802438.ismpolish.data.txt'. TCGA-AR-A24T TCGA-AR-A24T-10A TCGA-AR-A24T-10A-01D-A167-09 390d8a22-e4e5-4221-87ab-00075d4e80d9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24T TCGA-AR-A24T-10A TCGA-AR-A24T-10A-01W-A184-09 a7c4bb5f-52d0-4d21-875b-b5b500c7602d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24U TCGA-AR-A24U-01A TCGA-AR-A24U-01A-11D-A165-02 fd9c19f2-6af9-47c3-ade5-605839b09a65 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24U TCGA-AR-A24U-01A TCGA-AR-A24U-01A-11D-A166-01 6c84f85f-2dd5-452e-8658-a7844f7143ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24U TCGA-AR-A24U-01A TCGA-AR-A24U-01A-11D-A166-01 6c84f85f-2dd5-452e-8658-a7844f7143ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H08_804524.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-AR-A24U TCGA-AR-A24U-01A TCGA-AR-A24U-01A-11D-A166-01 6c84f85f-2dd5-452e-8658-a7844f7143ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H08_804524.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24U TCGA-AR-A24U-01A TCGA-AR-A24U-01A-11D-A166-01 6c84f85f-2dd5-452e-8658-a7844f7143ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H08_804524.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24U TCGA-AR-A24U-01A TCGA-AR-A24U-01A-11D-A166-01 6c84f85f-2dd5-452e-8658-a7844f7143ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H08_804524.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24U TCGA-AR-A24U-01A TCGA-AR-A24U-01A-11D-A166-01 6c84f85f-2dd5-452e-8658-a7844f7143ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H08_804524.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24U TCGA-AR-A24U-01A TCGA-AR-A24U-01A-11D-A166-01 6c84f85f-2dd5-452e-8658-a7844f7143ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H08_804524.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24U TCGA-AR-A24U-01A TCGA-AR-A24U-01A-11D-A166-01 6c84f85f-2dd5-452e-8658-a7844f7143ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H08_804524.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24U TCGA-AR-A24U-01A TCGA-AR-A24U-01A-11D-A166-01 6c84f85f-2dd5-452e-8658-a7844f7143ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H08_804524.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-AR-A24U TCGA-AR-A24U-01A TCGA-AR-A24U-01A-11D-A167-09 567cdc6c-df03-4642-8cbc-a269769ce1a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24U TCGA-AR-A24U-01A TCGA-AR-A24U-01A-11D-A16A-05 1597c0d7-0da5-4eef-b84d-fa08c8dbb48c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24U TCGA-AR-A24U-01A TCGA-AR-A24U-01A-11D-A16A-05 1597c0d7-0da5-4eef-b84d-fa08c8dbb48c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833141_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-AR-A24U TCGA-AR-A24U-01A TCGA-AR-A24U-01A-11D-A16A-05 1597c0d7-0da5-4eef-b84d-fa08c8dbb48c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833141_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-AR-A24U TCGA-AR-A24U-01A TCGA-AR-A24U-01A-11D-A16A-05 1597c0d7-0da5-4eef-b84d-fa08c8dbb48c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-2.TCGA-AR-A24U-01A-11D-A16A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0 142 07-NOV-11 04.58.21.556000000 PM TCGA-AR-A24U TCGA-AR-A24U-01A TCGA-AR-A24U-01A-11D-A16A-05 1597c0d7-0da5-4eef-b84d-fa08c8dbb48c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-3.TCGA-AR-A24U-01A-11D-A16A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0 142 07-NOV-11 06.37.11.245000000 PM TCGA-AR-A24U TCGA-AR-A24U-01A TCGA-AR-A24U-01A-11R-A168-13 42fc29f2-1739-4cc3-808a-f9c5bc8c2347 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24U TCGA-AR-A24U-01A TCGA-AR-A24U-01A-11R-A168-13 42fc29f2-1739-4cc3-808a-f9c5bc8c2347 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A24U-01A-11R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A24U TCGA-AR-A24U-01A TCGA-AR-A24U-01A-11R-A168-13 42fc29f2-1739-4cc3-808a-f9c5bc8c2347 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A24U-01A-11R-A168-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A24U TCGA-AR-A24U-01A TCGA-AR-A24U-01A-11R-A169-07 296c69de-2b77-4b3a-a228-9552a8a9836e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24U TCGA-AR-A24U-01A TCGA-AR-A24U-01A-11R-A169-07 296c69de-2b77-4b3a-a228-9552a8a9836e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_575242.TCGA-AR-A24U-01A-11R-A169-07.110921_UNC16-SN851_0089_AB0101ABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A24U TCGA-AR-A24U-01A TCGA-AR-A24U-01A-11R-A169-07 296c69de-2b77-4b3a-a228-9552a8a9836e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_575257.TCGA-AR-A24U-01A-11R-A169-07.110921_UNC16-SN851_0089_AB0101ABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A24U TCGA-AR-A24U-01A TCGA-AR-A24U-01A-11R-A169-07 296c69de-2b77-4b3a-a228-9552a8a9836e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_575388.TCGA-AR-A24U-01A-11R-A169-07.110921_UNC16-SN851_0089_AB0101ABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A24U TCGA-AR-A24U-01A TCGA-AR-A24U-01A-11W-A185-09 4d4bf6ac-15a9-4bf1-858f-e168f6b4b368 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24U TCGA-AR-A24U-10A TCGA-AR-A24U-10A-01D-A165-02 cc091d68-8b61-4bd4-a86d-aa672b0510de Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24U TCGA-AR-A24U-10A TCGA-AR-A24U-10A-01D-A166-01 44ef77d9-47b6-410f-b3c0-83524d668b32 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F06_802310.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F06_802310.ismpolish.data.txt'. TCGA-AR-A24U TCGA-AR-A24U-10A TCGA-AR-A24U-10A-01D-A166-01 44ef77d9-47b6-410f-b3c0-83524d668b32 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F06_802310.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F06_802310.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F06_802310.ismpolish.data.txt'. TCGA-AR-A24U TCGA-AR-A24U-10A TCGA-AR-A24U-10A-01D-A166-01 44ef77d9-47b6-410f-b3c0-83524d668b32 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F06_802310.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F06_802310.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F06_802310.ismpolish.data.txt'. TCGA-AR-A24U TCGA-AR-A24U-10A TCGA-AR-A24U-10A-01D-A167-09 12e573ba-3762-4877-b0c4-3631afa3c30b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24U TCGA-AR-A24U-10A TCGA-AR-A24U-10A-01W-A185-09 a4f4ede2-2113-4aba-b887-211d77358185 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24V TCGA-AR-A24V-01A TCGA-AR-A24V-01A-21D-A165-02 7d9177d8-0d96-42ec-a6dc-f3e536e4f389 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24V TCGA-AR-A24V-01A TCGA-AR-A24V-01A-21D-A166-01 2623f99f-9e60-476b-b522-50e7fc6fef5a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24V TCGA-AR-A24V-01A TCGA-AR-A24V-01A-21D-A166-01 2623f99f-9e60-476b-b522-50e7fc6fef5a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B07_802436.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-AR-A24V TCGA-AR-A24V-01A TCGA-AR-A24V-01A-21D-A166-01 2623f99f-9e60-476b-b522-50e7fc6fef5a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B07_802436.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24V TCGA-AR-A24V-01A TCGA-AR-A24V-01A-21D-A166-01 2623f99f-9e60-476b-b522-50e7fc6fef5a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B07_802436.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24V TCGA-AR-A24V-01A TCGA-AR-A24V-01A-21D-A166-01 2623f99f-9e60-476b-b522-50e7fc6fef5a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B07_802436.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24V TCGA-AR-A24V-01A TCGA-AR-A24V-01A-21D-A166-01 2623f99f-9e60-476b-b522-50e7fc6fef5a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B07_802436.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24V TCGA-AR-A24V-01A TCGA-AR-A24V-01A-21D-A166-01 2623f99f-9e60-476b-b522-50e7fc6fef5a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B07_802436.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24V TCGA-AR-A24V-01A TCGA-AR-A24V-01A-21D-A166-01 2623f99f-9e60-476b-b522-50e7fc6fef5a SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24Z TCGA-AR-A24Z-01A TCGA-AR-A24Z-01A-11D-A16A-05 7be0afbe-3882-4c97-b58c-be29796ba8f0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833142_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-AR-A24Z TCGA-AR-A24Z-01A TCGA-AR-A24Z-01A-11D-A16A-05 7be0afbe-3882-4c97-b58c-be29796ba8f0 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24Z TCGA-AR-A24Z-10A TCGA-AR-A24Z-10A-01D-A165-02 d7583eb0-044b-4703-8885-7801100287de Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24Z TCGA-AR-A24Z-10A TCGA-AR-A24Z-10A-01D-A166-01 e445ce72-b889-4874-9f69-3ee3a9e37013 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A24Z TCGA-AR-A24Z-10A TCGA-AR-A24Z-10A-01D-A166-01 e445ce72-b889-4874-9f69-3ee3a9e37013 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G08_802344.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-AR-A24Z TCGA-AR-A24Z-10A TCGA-AR-A24Z-10A-01D-A166-01 e445ce72-b889-4874-9f69-3ee3a9e37013 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G08_802344.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24Z TCGA-AR-A24Z-10A TCGA-AR-A24Z-10A-01D-A166-01 e445ce72-b889-4874-9f69-3ee3a9e37013 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G08_802344.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24Z TCGA-AR-A24Z-10A TCGA-AR-A24Z-10A-01D-A166-01 e445ce72-b889-4874-9f69-3ee3a9e37013 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G08_802344.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24Z TCGA-AR-A24Z-10A TCGA-AR-A24Z-10A-01D-A166-01 e445ce72-b889-4874-9f69-3ee3a9e37013 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G08_802344.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A24Z TCGA-AR-A24Z-10A TCGA-AR-A24Z-10A-01D-A166-01 e445ce72-b889-4874-9f69-3ee3a9e37013 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A24Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A250 TCGA-AR-A250-01A TCGA-AR-A250-01A-31D-A165-02 957a1203-a7b3-4efc-9fc1-9ab4339b1285 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A250.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A250 TCGA-AR-A250-01A TCGA-AR-A250-01A-31D-A166-01 66b51ec8-15d1-4d1e-9edf-28f2a6b037d9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A250.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A250 TCGA-AR-A250-01A TCGA-AR-A250-01A-31D-A166-01 66b51ec8-15d1-4d1e-9edf-28f2a6b037d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C10_802372.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-AR-A250 TCGA-AR-A250-01A TCGA-AR-A250-01A-31D-A166-01 66b51ec8-15d1-4d1e-9edf-28f2a6b037d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C10_802372.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A250 TCGA-AR-A250-01A TCGA-AR-A250-01A-31D-A166-01 66b51ec8-15d1-4d1e-9edf-28f2a6b037d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C10_802372.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A250 TCGA-AR-A250-01A TCGA-AR-A250-01A-31D-A166-01 66b51ec8-15d1-4d1e-9edf-28f2a6b037d9 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A250.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A250 TCGA-AR-A250-01A TCGA-AR-A250-01A-31D-A16A-05 0699a745-fc38-43b8-bb22-660d1833a19a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833141_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-AR-A250 TCGA-AR-A250-01A TCGA-AR-A250-01A-31D-A16A-05 0699a745-fc38-43b8-bb22-660d1833a19a DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_489388.TCGA-AR-A250-01A-31R-A169-07.110912_UNC16-SN851_0086_AB011WABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A250 TCGA-AR-A250-01A TCGA-AR-A250-01A-31R-A169-07 86373f83-264a-4875-8672-749ea434422f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_489418.TCGA-AR-A250-01A-31R-A169-07.110912_UNC16-SN851_0086_AB011WABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A250 TCGA-AR-A250-01A TCGA-AR-A250-01A-31W-A184-09 1490d347-a6bd-4933-a43b-5c2571490aa4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A250.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A250 TCGA-AR-A250-10A TCGA-AR-A250-10A-01D-A165-02 786d411b-ef68-4f3c-8b67-2ec8127a4722 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A250.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A250 TCGA-AR-A250-10A TCGA-AR-A250-10A-01D-A166-01 84ec93c4-c6d6-4cd3-a6a6-1a3e79adacbe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A250.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A250 TCGA-AR-A250-10A TCGA-AR-A250-10A-01D-A166-01 84ec93c4-c6d6-4cd3-a6a6-1a3e79adacbe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C11_802362.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-AR-A250 TCGA-AR-A250-10A TCGA-AR-A250-10A-01D-A166-01 84ec93c4-c6d6-4cd3-a6a6-1a3e79adacbe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C11_802362.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A250 TCGA-AR-A250-10A TCGA-AR-A250-10A-01D-A166-01 84ec93c4-c6d6-4cd3-a6a6-1a3e79adacbe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C11_802362.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A250 TCGA-AR-A250-10A TCGA-AR-A250-10A-01D-A166-01 84ec93c4-c6d6-4cd3-a6a6-1a3e79adacbe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C11_802362.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A250 TCGA-AR-A250-10A TCGA-AR-A250-10A-01D-A166-01 84ec93c4-c6d6-4cd3-a6a6-1a3e79adacbe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C11_802362.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A250 TCGA-AR-A250-10A TCGA-AR-A250-10A-01D-A166-01 84ec93c4-c6d6-4cd3-a6a6-1a3e79adacbe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C11_802362.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A250 TCGA-AR-A250-10A TCGA-AR-A250-10A-01D-A166-01 84ec93c4-c6d6-4cd3-a6a6-1a3e79adacbe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C11_802362.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A250 TCGA-AR-A250-10A TCGA-AR-A250-10A-01D-A166-01 84ec93c4-c6d6-4cd3-a6a6-1a3e79adacbe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C11_802362.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-AR-A250 TCGA-AR-A250-10A TCGA-AR-A250-10A-01D-A167-09 0035e0c2-0376-4050-a03e-df556d408b94 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A250.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A250 TCGA-AR-A250-10A TCGA-AR-A250-10A-01W-A184-09 474b3df8-485e-48ab-9b21-ea130409e11e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A250.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A251 TCGA-AR-A251-01A TCGA-AR-A251-01A-12D-A165-02 2a21b26c-d0fe-414d-b8ce-9ca7b09b7442 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A251.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A251 TCGA-AR-A251-01A TCGA-AR-A251-01A-12D-A166-01 a36f9f16-a240-419b-b230-17e2eb03eb73 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A251.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A251 TCGA-AR-A251-01A TCGA-AR-A251-01A-12D-A166-01 a36f9f16-a240-419b-b230-17e2eb03eb73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E09_802490.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-AR-A251 TCGA-AR-A251-01A TCGA-AR-A251-01A-12D-A166-01 a36f9f16-a240-419b-b230-17e2eb03eb73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E09_802490.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A251 TCGA-AR-A251-01A TCGA-AR-A251-01A-12D-A166-01 a36f9f16-a240-419b-b230-17e2eb03eb73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E09_802490.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A251 TCGA-AR-A251-01A TCGA-AR-A251-01A-12D-A166-01 a36f9f16-a240-419b-b230-17e2eb03eb73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E09_802490.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A251 TCGA-AR-A251-01A TCGA-AR-A251-01A-12D-A166-01 a36f9f16-a240-419b-b230-17e2eb03eb73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E09_802490.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A251 TCGA-AR-A251-01A TCGA-AR-A251-01A-12D-A166-01 a36f9f16-a240-419b-b230-17e2eb03eb73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E09_802490.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A251 TCGA-AR-A251-01A TCGA-AR-A251-01A-12D-A166-01 a36f9f16-a240-419b-b230-17e2eb03eb73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E09_802490.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A251 TCGA-AR-A251-01A TCGA-AR-A251-01A-12D-A166-01 a36f9f16-a240-419b-b230-17e2eb03eb73 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A251.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A251 TCGA-AR-A251-01A TCGA-AR-A251-01A-12D-A16A-05 da1c85ae-8783-4a8b-8444-0d8504ee4ee2 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833159_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-AR-A251 TCGA-AR-A251-01A TCGA-AR-A251-01A-12D-A16A-05 da1c85ae-8783-4a8b-8444-0d8504ee4ee2 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833159_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-AR-A251 TCGA-AR-A251-01A TCGA-AR-A251-01A-12D-A16A-05 da1c85ae-8783-4a8b-8444-0d8504ee4ee2 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-2.TCGA-AR-A251-01A-12D-A16A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0 142 07-NOV-11 04.58.21.556000000 PM TCGA-AR-A251 TCGA-AR-A251-01A TCGA-AR-A251-01A-12D-A16A-05 da1c85ae-8783-4a8b-8444-0d8504ee4ee2 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-3.TCGA-AR-A251-01A-12D-A16A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0 142 07-NOV-11 06.37.11.245000000 PM TCGA-AR-A251 TCGA-AR-A251-01A TCGA-AR-A251-01A-12R-A168-13 988bbe9b-7e79-4806-860e-094b23d50377 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A251.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A251 TCGA-AR-A251-01A TCGA-AR-A251-01A-12R-A168-13 988bbe9b-7e79-4806-860e-094b23d50377 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A251-01A-12R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A251 TCGA-AR-A251-01A TCGA-AR-A251-01A-12R-A168-13 988bbe9b-7e79-4806-860e-094b23d50377 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A251-01A-12R-A168-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A251 TCGA-AR-A251-01A TCGA-AR-A251-01A-12R-A169-07 06760907-c6ec-4b72-bfd4-87811823b8ba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A251.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A251 TCGA-AR-A251-01A TCGA-AR-A251-01A-12R-A169-07 06760907-c6ec-4b72-bfd4-87811823b8ba RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_489170.TCGA-AR-A251-01A-12R-A169-07.110912_UNC16-SN851_0086_AB011WABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A251 TCGA-AR-A251-01A TCGA-AR-A251-01A-12R-A169-07 06760907-c6ec-4b72-bfd4-87811823b8ba RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_489172.TCGA-AR-A251-01A-12R-A169-07.110912_UNC16-SN851_0086_AB011WABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A251 TCGA-AR-A251-01A TCGA-AR-A251-01A-12R-A169-07 06760907-c6ec-4b72-bfd4-87811823b8ba RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_489202.TCGA-AR-A251-01A-12R-A169-07.110912_UNC16-SN851_0086_AB011WABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A251 TCGA-AR-A251-01A TCGA-AR-A251-01A-12W-A184-09 c08a2c7a-17ac-43eb-b0e8-a5f9f9152bac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A251.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A251 TCGA-AR-A251-10A TCGA-AR-A251-10A-01D-A165-02 4e7cbde9-f3a2-489f-8dac-3eab9eed397c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A251.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A251 TCGA-AR-A251-10A TCGA-AR-A251-10A-01D-A166-01 5beccc1e-4489-4216-a524-5349ec36c68b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A251.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A251 TCGA-AR-A251-10A TCGA-AR-A251-10A-01D-A166-01 5beccc1e-4489-4216-a524-5349ec36c68b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H03_804438.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-AR-A251 TCGA-AR-A251-10A TCGA-AR-A251-10A-01D-A166-01 5beccc1e-4489-4216-a524-5349ec36c68b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H03_804438.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A251 TCGA-AR-A251-10A TCGA-AR-A251-10A-01D-A166-01 5beccc1e-4489-4216-a524-5349ec36c68b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H03_804438.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A251 TCGA-AR-A251-10A TCGA-AR-A251-10A-01D-A166-01 5beccc1e-4489-4216-a524-5349ec36c68b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H03_804438.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A251 TCGA-AR-A251-10A TCGA-AR-A251-10A-01D-A166-01 5beccc1e-4489-4216-a524-5349ec36c68b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H03_804438.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A251 TCGA-AR-A251-10A TCGA-AR-A251-10A-01D-A166-01 5beccc1e-4489-4216-a524-5349ec36c68b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H03_804438.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A251 TCGA-AR-A251-10A TCGA-AR-A251-10A-01D-A166-01 5beccc1e-4489-4216-a524-5349ec36c68b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H03_804438.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A251 TCGA-AR-A251-10A TCGA-AR-A251-10A-01D-A166-01 5beccc1e-4489-4216-a524-5349ec36c68b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H03_804438.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-AR-A251 TCGA-AR-A251-10A TCGA-AR-A251-10A-01D-A167-09 59a8266d-0a43-4abf-bfe8-2c90002cf0bd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A251.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A251 TCGA-AR-A251-10A TCGA-AR-A251-10A-01W-A184-09 a9e17eed-705c-4a4a-bb3f-3112a909c2a0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A251.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A252 TCGA-AR-A252-01A TCGA-AR-A252-01A-11D-A165-02 8564df41-8755-4f90-893f-aa4ccefc85a9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A252.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A252 TCGA-AR-A252-01A TCGA-AR-A252-01A-11D-A166-01 4100914c-192f-4cac-ac05-56f707463196 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A252.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A252 TCGA-AR-A252-01A TCGA-AR-A252-01A-11D-A166-01 4100914c-192f-4cac-ac05-56f707463196 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H05_804520.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-AR-A252 TCGA-AR-A252-01A TCGA-AR-A252-01A-11D-A166-01 4100914c-192f-4cac-ac05-56f707463196 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H05_804520.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A252 TCGA-AR-A252-01A TCGA-AR-A252-01A-11D-A166-01 4100914c-192f-4cac-ac05-56f707463196 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H05_804520.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A252 TCGA-AR-A252-01A TCGA-AR-A252-01A-11D-A166-01 4100914c-192f-4cac-ac05-56f707463196 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H05_804520.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A252 TCGA-AR-A252-01A TCGA-AR-A252-01A-11D-A166-01 4100914c-192f-4cac-ac05-56f707463196 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H05_804520.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A252 TCGA-AR-A252-01A TCGA-AR-A252-01A-11D-A166-01 4100914c-192f-4cac-ac05-56f707463196 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H05_804520.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A252 TCGA-AR-A252-01A TCGA-AR-A252-01A-11D-A166-01 4100914c-192f-4cac-ac05-56f707463196 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H05_804520.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A252 TCGA-AR-A252-01A TCGA-AR-A252-01A-11D-A166-01 4100914c-192f-4cac-ac05-56f707463196 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H05_804520.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-AR-A252 TCGA-AR-A252-01A TCGA-AR-A252-01A-11D-A167-09 e800d9b3-32a1-48eb-840b-9a3bec9d1f6e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A252.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A252 TCGA-AR-A252-01A TCGA-AR-A252-01A-11D-A16A-05 56bde27e-2a35-4743-8efa-67759e24d467 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A252.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A252 TCGA-AR-A252-01A TCGA-AR-A252-01A-11D-A16A-05 56bde27e-2a35-4743-8efa-67759e24d467 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833142_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-AR-A252 TCGA-AR-A252-01A TCGA-AR-A252-01A-11D-A16A-05 56bde27e-2a35-4743-8efa-67759e24d467 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833142_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-AR-A252 TCGA-AR-A252-01A TCGA-AR-A252-01A-11D-A16A-05 56bde27e-2a35-4743-8efa-67759e24d467 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-2.TCGA-AR-A252-01A-11D-A16A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0 142 07-NOV-11 04.58.21.556000000 PM TCGA-AR-A252 TCGA-AR-A252-01A TCGA-AR-A252-01A-11D-A16A-05 56bde27e-2a35-4743-8efa-67759e24d467 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A252-01A-11R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A252 TCGA-AR-A252-01A TCGA-AR-A252-01A-11R-A168-13 e9995e3c-f4f1-4e82-8998-680a54303cc1 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A252-01A-11R-A168-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A252 TCGA-AR-A252-01A TCGA-AR-A252-01A-11R-A169-07 f325c7a8-46b0-4d75-9228-db391c270c71 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A252.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A252 TCGA-AR-A252-10A TCGA-AR-A252-10A-01D-A165-02 95f0917f-c7be-430f-8034-bf7f28edf62a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A252.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A252 TCGA-AR-A252-10A TCGA-AR-A252-10A-01D-A166-01 62fc5b77-95f5-4dde-88d7-3437b1ca9980 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A252.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A252 TCGA-AR-A252-10A TCGA-AR-A252-10A-01D-A166-01 62fc5b77-95f5-4dde-88d7-3437b1ca9980 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H07_804600.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-AR-A252 TCGA-AR-A252-10A TCGA-AR-A252-10A-01D-A166-01 62fc5b77-95f5-4dde-88d7-3437b1ca9980 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H07_804600.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A252 TCGA-AR-A252-10A TCGA-AR-A252-10A-01D-A166-01 62fc5b77-95f5-4dde-88d7-3437b1ca9980 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H07_804600.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A252 TCGA-AR-A252-10A TCGA-AR-A252-10A-01D-A166-01 62fc5b77-95f5-4dde-88d7-3437b1ca9980 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H07_804600.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A252 TCGA-AR-A252-10A TCGA-AR-A252-10A-01D-A166-01 62fc5b77-95f5-4dde-88d7-3437b1ca9980 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H07_804600.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A252 TCGA-AR-A252-10A TCGA-AR-A252-10A-01D-A166-01 62fc5b77-95f5-4dde-88d7-3437b1ca9980 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H07_804600.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A252 TCGA-AR-A252-10A TCGA-AR-A252-10A-01D-A166-01 62fc5b77-95f5-4dde-88d7-3437b1ca9980 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H07_804600.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A252 TCGA-AR-A252-10A TCGA-AR-A252-10A-01D-A166-01 62fc5b77-95f5-4dde-88d7-3437b1ca9980 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H07_804600.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-AR-A252 TCGA-AR-A252-10A TCGA-AR-A252-10A-01D-A167-09 6f509e3d-b8f5-45de-8915-56c7759e3951 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A252.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A252 TCGA-AR-A252-10A TCGA-AR-A252-10A-01W-A184-09 c2e0d630-40b0-485e-ba44-e12d4032c6c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A252.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A254 TCGA-AR-A254-01A TCGA-AR-A254-01A-21D-A165-02 106922b6-7b09-44ba-aa23-4036130585cc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A254.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A254 TCGA-AR-A254-01A TCGA-AR-A254-01A-21D-A166-01 7385c5f6-5fb1-4d45-a17d-93636a161c7c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A254.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A254 TCGA-AR-A254-01A TCGA-AR-A254-01A-21D-A166-01 7385c5f6-5fb1-4d45-a17d-93636a161c7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B04_802354.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-AR-A254 TCGA-AR-A254-01A TCGA-AR-A254-01A-21D-A166-01 7385c5f6-5fb1-4d45-a17d-93636a161c7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B04_802354.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A254 TCGA-AR-A254-01A TCGA-AR-A254-01A-21D-A166-01 7385c5f6-5fb1-4d45-a17d-93636a161c7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B04_802354.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A254 TCGA-AR-A254-01A TCGA-AR-A254-01A-21D-A166-01 7385c5f6-5fb1-4d45-a17d-93636a161c7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B04_802354.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A254 TCGA-AR-A254-01A TCGA-AR-A254-01A-21D-A166-01 7385c5f6-5fb1-4d45-a17d-93636a161c7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B04_802354.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A254 TCGA-AR-A254-01A TCGA-AR-A254-01A-21D-A166-01 7385c5f6-5fb1-4d45-a17d-93636a161c7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B04_802354.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A254 TCGA-AR-A254-01A TCGA-AR-A254-01A-21D-A166-01 7385c5f6-5fb1-4d45-a17d-93636a161c7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B04_802354.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A254 TCGA-AR-A254-01A TCGA-AR-A254-01A-21D-A166-01 7385c5f6-5fb1-4d45-a17d-93636a161c7c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B04_802354.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-AR-A254 TCGA-AR-A254-01A TCGA-AR-A254-01A-21D-A167-09 fe2bdac0-832e-4268-bd8f-5dcfffda1979 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A254.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A254 TCGA-AR-A254-01A TCGA-AR-A254-01A-21D-A16A-05 a1137fb6-8a23-4f75-947c-0dd0cc6051e8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A254.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A254 TCGA-AR-A254-01A TCGA-AR-A254-01A-21D-A16A-05 a1137fb6-8a23-4f75-947c-0dd0cc6051e8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833134_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-AR-A254 TCGA-AR-A254-01A TCGA-AR-A254-01A-21D-A16A-05 a1137fb6-8a23-4f75-947c-0dd0cc6051e8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833134_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-AR-A254 TCGA-AR-A254-01A TCGA-AR-A254-01A-21D-A16A-05 a1137fb6-8a23-4f75-947c-0dd0cc6051e8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-2.TCGA-AR-A254-01A-21D-A16A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0 142 07-NOV-11 04.58.21.556000000 PM TCGA-AR-A254 TCGA-AR-A254-01A TCGA-AR-A254-01A-21D-A16A-05 a1137fb6-8a23-4f75-947c-0dd0cc6051e8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-3.TCGA-AR-A254-01A-21D-A16A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0 142 07-NOV-11 06.37.11.245000000 PM TCGA-AR-A254 TCGA-AR-A254-01A TCGA-AR-A254-01A-21R-A168-13 bcd25373-34cf-47bb-b842-525199cba236 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A254.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A254 TCGA-AR-A254-01A TCGA-AR-A254-01A-21R-A168-13 bcd25373-34cf-47bb-b842-525199cba236 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A254-01A-21R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A254 TCGA-AR-A254-01A TCGA-AR-A254-01A-21R-A168-13 bcd25373-34cf-47bb-b842-525199cba236 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A254-01A-21R-A168-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A254 TCGA-AR-A254-01A TCGA-AR-A254-01A-21R-A169-07 5741e1ce-5d4c-40dc-aa01-e71a45341884 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A254.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A254 TCGA-AR-A254-01A TCGA-AR-A254-01A-21R-A169-07 5741e1ce-5d4c-40dc-aa01-e71a45341884 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_502193.TCGA-AR-A254-01A-21R-A169-07.110907_UNC13-SN749_0110_AB00RJABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A254 TCGA-AR-A254-01A TCGA-AR-A254-01A-21R-A169-07 5741e1ce-5d4c-40dc-aa01-e71a45341884 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_502198.TCGA-AR-A254-01A-21R-A169-07.110907_UNC13-SN749_0110_AB00RJABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A254 TCGA-AR-A254-01A TCGA-AR-A254-01A-21R-A169-07 5741e1ce-5d4c-40dc-aa01-e71a45341884 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_502246.TCGA-AR-A254-01A-21R-A169-07.110907_UNC13-SN749_0110_AB00RJABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A254 TCGA-AR-A254-01A TCGA-AR-A254-01A-21W-A185-09 60e04bd0-55b8-4bc1-accb-5e83bdbbfb7e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A254.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A254 TCGA-AR-A254-10A TCGA-AR-A254-10A-01D-A165-02 29e6c5ed-483c-463a-8aed-b3c5af0f8f43 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A254.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A254 TCGA-AR-A254-10A TCGA-AR-A254-10A-01D-A166-01 0a1c14c9-46b4-46cc-b233-7d5ea2649847 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A254.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A254 TCGA-AR-A254-10A TCGA-AR-A254-10A-01D-A166-01 0a1c14c9-46b4-46cc-b233-7d5ea2649847 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H11_804422.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-AR-A254 TCGA-AR-A254-10A TCGA-AR-A254-10A-01D-A166-01 0a1c14c9-46b4-46cc-b233-7d5ea2649847 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H11_804422.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A254 TCGA-AR-A254-10A TCGA-AR-A254-10A-01D-A166-01 0a1c14c9-46b4-46cc-b233-7d5ea2649847 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H11_804422.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A254 TCGA-AR-A254-10A TCGA-AR-A254-10A-01D-A166-01 0a1c14c9-46b4-46cc-b233-7d5ea2649847 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H11_804422.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A254 TCGA-AR-A254-10A TCGA-AR-A254-10A-01D-A166-01 0a1c14c9-46b4-46cc-b233-7d5ea2649847 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H11_804422.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A254 TCGA-AR-A254-10A TCGA-AR-A254-10A-01D-A166-01 0a1c14c9-46b4-46cc-b233-7d5ea2649847 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H11_804422.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A254 TCGA-AR-A254-10A TCGA-AR-A254-10A-01D-A166-01 0a1c14c9-46b4-46cc-b233-7d5ea2649847 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H11_804422.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A254 TCGA-AR-A254-10A TCGA-AR-A254-10A-01D-A166-01 0a1c14c9-46b4-46cc-b233-7d5ea2649847 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H11_804422.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-AR-A254 TCGA-AR-A254-10A TCGA-AR-A254-10A-01D-A167-09 d139e454-63f2-42da-8ab5-997fca0482b8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A254.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A254 TCGA-AR-A254-10A TCGA-AR-A254-10A-01W-A185-09 bebdb5c0-9b19-4f0b-9b46-f0e589a63a91 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A254.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A255 TCGA-AR-A255-01A TCGA-AR-A255-01A-11D-A165-02 0543480c-dc42-414e-9862-c33f7457fc35 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A255.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A255 TCGA-AR-A255-01A TCGA-AR-A255-01A-11D-A166-01 5845be86-bd10-4bf5-ade3-71674a1eecca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A255.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A255 TCGA-AR-A255-01A TCGA-AR-A255-01A-11D-A166-01 5845be86-bd10-4bf5-ade3-71674a1eecca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D05_802426.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-AR-A255 TCGA-AR-A255-01A TCGA-AR-A255-01A-11D-A166-01 5845be86-bd10-4bf5-ade3-71674a1eecca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D05_802426.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A255 TCGA-AR-A255-01A TCGA-AR-A255-01A-11D-A166-01 5845be86-bd10-4bf5-ade3-71674a1eecca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D05_802426.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A255 TCGA-AR-A255-01A TCGA-AR-A255-01A-11D-A166-01 5845be86-bd10-4bf5-ade3-71674a1eecca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D05_802426.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A255 TCGA-AR-A255-01A TCGA-AR-A255-01A-11D-A166-01 5845be86-bd10-4bf5-ade3-71674a1eecca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D05_802426.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A255 TCGA-AR-A255-01A TCGA-AR-A255-01A-11D-A166-01 5845be86-bd10-4bf5-ade3-71674a1eecca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D05_802426.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A255 TCGA-AR-A255-01A TCGA-AR-A255-01A-11D-A166-01 5845be86-bd10-4bf5-ade3-71674a1eecca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D05_802426.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A255 TCGA-AR-A255-01A TCGA-AR-A255-01A-11D-A166-01 5845be86-bd10-4bf5-ade3-71674a1eecca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D05_802426.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-AR-A255 TCGA-AR-A255-01A TCGA-AR-A255-01A-11D-A167-09 505f1398-0bd8-4f1c-a142-651605158bf3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A255.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A255 TCGA-AR-A255-01A TCGA-AR-A255-01A-11D-A16A-05 57d5b1bd-4734-4699-9359-ff2aa4469987 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A255.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A255 TCGA-AR-A255-01A TCGA-AR-A255-01A-11D-A16A-05 57d5b1bd-4734-4699-9359-ff2aa4469987 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833159_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-AR-A255 TCGA-AR-A255-01A TCGA-AR-A255-01A-11D-A16A-05 57d5b1bd-4734-4699-9359-ff2aa4469987 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833159_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-AR-A255 TCGA-AR-A255-01A TCGA-AR-A255-01A-11D-A16A-05 57d5b1bd-4734-4699-9359-ff2aa4469987 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-2.TCGA-AR-A255-01A-11D-A16A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0 142 07-NOV-11 04.58.21.556000000 PM TCGA-AR-A255 TCGA-AR-A255-01A TCGA-AR-A255-01A-11D-A16A-05 57d5b1bd-4734-4699-9359-ff2aa4469987 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-3.TCGA-AR-A255-01A-11D-A16A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0 142 07-NOV-11 06.37.11.245000000 PM TCGA-AR-A255 TCGA-AR-A255-01A TCGA-AR-A255-01A-11R-A168-13 c9205390-3969-4e81-8c39-9f653fdc3bc0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A255.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A255 TCGA-AR-A255-01A TCGA-AR-A255-01A-11R-A168-13 c9205390-3969-4e81-8c39-9f653fdc3bc0 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A255-01A-11R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A255 TCGA-AR-A255-01A TCGA-AR-A255-01A-11R-A168-13 c9205390-3969-4e81-8c39-9f653fdc3bc0 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-AR-A255-01A-11R-A168-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-AR-A255 TCGA-AR-A255-01A TCGA-AR-A255-01A-11R-A169-07 5f714b76-1ed1-4828-8b66-3627c5d78189 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A255.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A255 TCGA-AR-A255-01A TCGA-AR-A255-01A-11R-A169-07 5f714b76-1ed1-4828-8b66-3627c5d78189 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_489040.TCGA-AR-A255-01A-11R-A169-07.110912_UNC16-SN851_0086_AB011WABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A255 TCGA-AR-A255-01A TCGA-AR-A255-01A-11R-A169-07 5f714b76-1ed1-4828-8b66-3627c5d78189 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_489042.TCGA-AR-A255-01A-11R-A169-07.110912_UNC16-SN851_0086_AB011WABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A255 TCGA-AR-A255-01A TCGA-AR-A255-01A-11R-A169-07 5f714b76-1ed1-4828-8b66-3627c5d78189 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_489137.TCGA-AR-A255-01A-11R-A169-07.110912_UNC16-SN851_0086_AB011WABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-AR-A255 TCGA-AR-A255-01A TCGA-AR-A255-01A-11W-A184-09 1af4e14f-5927-4760-a813-98997a8102f3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A255.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A255 TCGA-AR-A255-10A TCGA-AR-A255-10A-01D-A165-02 3139566c-6bd3-4bd9-816c-f38f529a05e7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A255.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A255 TCGA-AR-A255-10A TCGA-AR-A255-10A-01D-A166-01 aac17915-236e-4fc7-ad7b-aa38c7c29fa0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A255.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A255 TCGA-AR-A255-10A TCGA-AR-A255-10A-01D-A166-01 aac17915-236e-4fc7-ad7b-aa38c7c29fa0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F09_802336.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-AR-A255 TCGA-AR-A255-10A TCGA-AR-A255-10A-01D-A166-01 aac17915-236e-4fc7-ad7b-aa38c7c29fa0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F09_802336.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A255 TCGA-AR-A255-10A TCGA-AR-A255-10A-01D-A166-01 aac17915-236e-4fc7-ad7b-aa38c7c29fa0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F09_802336.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A255 TCGA-AR-A255-10A TCGA-AR-A255-10A-01D-A166-01 aac17915-236e-4fc7-ad7b-aa38c7c29fa0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F09_802336.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A255 TCGA-AR-A255-10A TCGA-AR-A255-10A-01D-A166-01 aac17915-236e-4fc7-ad7b-aa38c7c29fa0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F09_802336.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A255 TCGA-AR-A255-10A TCGA-AR-A255-10A-01D-A166-01 aac17915-236e-4fc7-ad7b-aa38c7c29fa0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F09_802336.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A255 TCGA-AR-A255-10A TCGA-AR-A255-10A-01D-A166-01 aac17915-236e-4fc7-ad7b-aa38c7c29fa0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F09_802336.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A255 TCGA-AR-A255-10A TCGA-AR-A255-10A-01D-A166-01 aac17915-236e-4fc7-ad7b-aa38c7c29fa0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F09_802336.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-AR-A255 TCGA-AR-A255-10A TCGA-AR-A255-10A-01D-A167-09 b9cf1b28-7656-4648-a3de-714e4a154c3e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A255.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A255 TCGA-AR-A255-10A TCGA-AR-A255-10A-01W-A184-09 78790998-2932-4b77-a32e-e45fbbfab11f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A255.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A256 TCGA-AR-A256-01A TCGA-AR-A256-01A-11D-A165-02 6641ded6-8385-4549-b440-45d82a3605bf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A256.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A256 TCGA-AR-A256-01A TCGA-AR-A256-01A-11D-A166-01 4b23b5e1-813b-4975-8594-627aadcd3f92 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A256.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A256 TCGA-AR-A256-01A TCGA-AR-A256-01A-11D-A166-01 4b23b5e1-813b-4975-8594-627aadcd3f92 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A07_802416.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-AR-A256 TCGA-AR-A256-01A TCGA-AR-A256-01A-11D-A166-01 4b23b5e1-813b-4975-8594-627aadcd3f92 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A07_802416.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A256 TCGA-AR-A256-01A TCGA-AR-A256-01A-11D-A166-01 4b23b5e1-813b-4975-8594-627aadcd3f92 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A07_802416.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A256 TCGA-AR-A256-01A TCGA-AR-A256-01A-11D-A166-01 4b23b5e1-813b-4975-8594-627aadcd3f92 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A07_802416.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A256 TCGA-AR-A256-01A TCGA-AR-A256-01A-11D-A166-01 4b23b5e1-813b-4975-8594-627aadcd3f92 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A07_802416.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A256 TCGA-AR-A256-01A TCGA-AR-A256-01A-11D-A166-01 4b23b5e1-813b-4975-8594-627aadcd3f92 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A07_802416.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A256 TCGA-AR-A256-01A TCGA-AR-A256-01A-11D-A166-01 4b23b5e1-813b-4975-8594-627aadcd3f92 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A07_802416.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A256 TCGA-AR-A256-01A TCGA-AR-A256-01A-11D-A166-01 4b23b5e1-813b-4975-8594-627aadcd3f92 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A07_802416.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-AR-A256 TCGA-AR-A256-01A TCGA-AR-A256-01A-11D-A167-09 ea43434b-197e-48ac-ae2e-46bc7f3776de Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A256.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A256 TCGA-AR-A256-01A TCGA-AR-A256-01A-11D-A16A-05 fc6c11ac-e7f9-4fbd-884d-ecdcc951c215 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A256.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A256 TCGA-AR-A256-01A TCGA-AR-A256-01A-11D-A16A-05 fc6c11ac-e7f9-4fbd-884d-ecdcc951c215 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833155_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-AR-A256 TCGA-AR-A256-01A TCGA-AR-A256-01A-11D-A16A-05 fc6c11ac-e7f9-4fbd-884d-ecdcc951c215 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-AR-A256.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-AR-A256 TCGA-AR-A256-10A TCGA-AR-A256-10A-01D-A166-01 e4c83bc7-1441-4e30-800b-af2d5c3cb122 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G01_802400.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-AR-A256 TCGA-AR-A256-10A TCGA-AR-A256-10A-01D-A166-01 e4c83bc7-1441-4e30-800b-af2d5c3cb122 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G01_802400.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A256 TCGA-AR-A256-10A TCGA-AR-A256-10A-01D-A166-01 e4c83bc7-1441-4e30-800b-af2d5c3cb122 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G01_802400.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-AR-A256 TCGA-AR-A256-10A TCGA-AR-A256-10A-01D-A166-01 e4c83bc7-1441-4e30-800b-af2d5c3cb122 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I2 TCGA-B6-A0I2-01A TCGA-B6-A0I2-01A-11D-A032-05 d18e3a97-6233-422f-8463-aad02f692fb0 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-B6-A0I2-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-B6-A0I2 TCGA-B6-A0I2-01A TCGA-B6-A0I2-01A-11D-A032-05 d18e3a97-6233-422f-8463-aad02f692fb0 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-B6-A0I2-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-B6-A0I2 TCGA-B6-A0I2-01A TCGA-B6-A0I2-01A-11D-A032-05 d18e3a97-6233-422f-8463-aad02f692fb0 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-B6-A0I2-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-B6-A0I2 TCGA-B6-A0I2-01A TCGA-B6-A0I2-01A-11D-A033-02 ea144bce-3752-42d4-bdb9-ad5144eeac6b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I2 TCGA-B6-A0I2-01A TCGA-B6-A0I2-01A-11D-A036-01 aa5e3733-d47a-4371-99ab-34d98aec9bf6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I2 TCGA-B6-A0I2-01A TCGA-B6-A0I2-01A-11D-A036-01 aa5e3733-d47a-4371-99ab-34d98aec9bf6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G07_667074.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0I2 TCGA-B6-A0I2-01A TCGA-B6-A0I2-01A-11D-A036-01 aa5e3733-d47a-4371-99ab-34d98aec9bf6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G07_667074.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I2 TCGA-B6-A0I2-01A TCGA-B6-A0I2-01A-11D-A036-01 aa5e3733-d47a-4371-99ab-34d98aec9bf6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G07_667074.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I2 TCGA-B6-A0I2-01A TCGA-B6-A0I2-01A-11D-A036-01 aa5e3733-d47a-4371-99ab-34d98aec9bf6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G07_667074.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I2 TCGA-B6-A0I2-01A TCGA-B6-A0I2-01A-11D-A036-01 aa5e3733-d47a-4371-99ab-34d98aec9bf6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G07_667074.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I2 TCGA-B6-A0I2-01A TCGA-B6-A0I2-01A-11D-A036-01 aa5e3733-d47a-4371-99ab-34d98aec9bf6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G07_667074.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I2 TCGA-B6-A0I2-01A TCGA-B6-A0I2-01A-11D-A036-01 aa5e3733-d47a-4371-99ab-34d98aec9bf6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G07_667074.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I2 TCGA-B6-A0I2-01A TCGA-B6-A0I2-01A-11D-A036-01 aa5e3733-d47a-4371-99ab-34d98aec9bf6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G07_667074.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-B6-A0I2 TCGA-B6-A0I2-01A TCGA-B6-A0I2-01A-11D-A044-08 31a2b47f-4c4e-44c2-b3bc-2d1e48394dab Complete Clinical Set bio 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1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I2 TCGA-B6-A0I2-01A TCGA-B6-A0I2-01A-11R-A034-07 7175b3eb-5198-4d7f-b205-91ae8df344b4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I2 TCGA-B6-A0I2-01A TCGA-B6-A0I2-01A-11R-A034-07 7175b3eb-5198-4d7f-b205-91ae8df344b4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012117_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-B6-A0I2 TCGA-B6-A0I2-01A TCGA-B6-A0I2-01A-11R-A034-07 7175b3eb-5198-4d7f-b205-91ae8df344b4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012117_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-B6-A0I2 TCGA-B6-A0I2-01A TCGA-B6-A0I2-01A-11R-A034-07 7175b3eb-5198-4d7f-b205-91ae8df344b4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012117_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-B6-A0I2 TCGA-B6-A0I2-01A TCGA-B6-A0I2-01A-11R-A034-07 7175b3eb-5198-4d7f-b205-91ae8df344b4 RNASeq IlluminaHiSeq_RNASeq 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1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I2 TCGA-B6-A0I2-10A TCGA-B6-A0I2-10A-01D-A037-01 2ad7c111-a35c-463a-ae66-ee4d3252e7a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I2 TCGA-B6-A0I2-10A TCGA-B6-A0I2-10A-01D-A037-01 2ad7c111-a35c-463a-ae66-ee4d3252e7a6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D01_667082.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0I2 TCGA-B6-A0I2-10A TCGA-B6-A0I2-10A-01D-A037-01 2ad7c111-a35c-463a-ae66-ee4d3252e7a6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D01_667082.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I2 TCGA-B6-A0I2-10A TCGA-B6-A0I2-10A-01D-A037-01 2ad7c111-a35c-463a-ae66-ee4d3252e7a6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D01_667082.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I2 TCGA-B6-A0I2-10A TCGA-B6-A0I2-10A-01D-A037-01 2ad7c111-a35c-463a-ae66-ee4d3252e7a6 SNP Genome_Wide_SNP_6 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1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I2 TCGA-B6-A0I2-10A TCGA-B6-A0I2-10A-01W-A055-09 541dbb6d-4173-4885-9387-b9607b1ed40f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0I2 TCGA-B6-A0I2-10A TCGA-B6-A0I2-10A-01W-A055-09 541dbb6d-4173-4885-9387-b9607b1ed40f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0I2 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-B6-A0I5-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11D-A033-02 10bb4062-c408-4106-b1bc-5cfba0f00aaa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11D-A036-01 2ecbf2ad-e0d5-4197-a4a1-90014bdcc615 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11D-A036-01 2ecbf2ad-e0d5-4197-a4a1-90014bdcc615 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A11_667092.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11D-A036-01 2ecbf2ad-e0d5-4197-a4a1-90014bdcc615 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A11_667092.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11D-A036-01 2ecbf2ad-e0d5-4197-a4a1-90014bdcc615 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A11_667092.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11D-A036-01 2ecbf2ad-e0d5-4197-a4a1-90014bdcc615 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A11_667092.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11D-A036-01 2ecbf2ad-e0d5-4197-a4a1-90014bdcc615 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A11_667092.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11D-A036-01 2ecbf2ad-e0d5-4197-a4a1-90014bdcc615 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A11_667092.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11D-A036-01 2ecbf2ad-e0d5-4197-a4a1-90014bdcc615 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A11_667092.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11D-A036-01 2ecbf2ad-e0d5-4197-a4a1-90014bdcc615 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A11_667092.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11D-A044-08 800aa928-6808-48e2-9264-59fa760f1a41 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11D-A045-09 da1e6010-3e9b-4dfd-bdde-5e4b17786345 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11R-A034-07 2448118f-9664-4b9e-b67f-c019cf5b8d35 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11R-A034-07 2448118f-9664-4b9e-b67f-c019cf5b8d35 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012096_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11R-A034-07 2448118f-9664-4b9e-b67f-c019cf5b8d35 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012096_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11R-A034-07 2448118f-9664-4b9e-b67f-c019cf5b8d35 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012096_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11R-A034-07 2448118f-9664-4b9e-b67f-c019cf5b8d35 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_475963.TCGA-B6-A0I5-01A-11R-A034-07.110412_UNC13-SN749_0051_AB0168ABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11R-A034-07 2448118f-9664-4b9e-b67f-c019cf5b8d35 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_475994.TCGA-B6-A0I5-01A-11R-A034-07.110412_UNC13-SN749_0051_AB0168ABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11R-A034-07 2448118f-9664-4b9e-b67f-c019cf5b8d35 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476229.TCGA-B6-A0I5-01A-11R-A034-07.110412_UNC13-SN749_0051_AB0168ABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11R-A035-13 469e44db-edae-485a-8f69-cdfcccc47326 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11R-A035-13 469e44db-edae-485a-8f69-cdfcccc47326 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0I5-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11R-A035-13 469e44db-edae-485a-8f69-cdfcccc47326 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0I5-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11W-A050-09 5091178c-65c0-4029-ba5d-645259374588 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11W-A051-08 1271712e-8603-4ff7-a9ca-98fc486bb763 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11W-A100-09 f1139266-fade-4d27-ac67-60870e666295 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11W-A100-09 f1139266-fade-4d27-ac67-60870e666295 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11W-A100-09 f1139266-fade-4d27-ac67-60870e666295 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11X-A048-08 b5b169fa-febf-415a-a5c5-92036a07eac0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-01A TCGA-B6-A0I5-01A-11X-A049-09 53644200-e278-40d4-bee0-acb97eddb3e3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-10A TCGA-B6-A0I5-10A-01D-A031-02 e3e9ed9f-19df-4557-b4b9-b147f1053338 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-10A TCGA-B6-A0I5-10A-01D-A037-01 8692a5ef-b21f-47fe-866d-dab619241b74 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-10A TCGA-B6-A0I5-10A-01D-A037-01 8692a5ef-b21f-47fe-866d-dab619241b74 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B11_667216.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0I5 TCGA-B6-A0I5-10A TCGA-B6-A0I5-10A-01D-A037-01 8692a5ef-b21f-47fe-866d-dab619241b74 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B11_667216.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-10A TCGA-B6-A0I5-10A-01D-A037-01 8692a5ef-b21f-47fe-866d-dab619241b74 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B11_667216.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-10A TCGA-B6-A0I5-10A-01D-A037-01 8692a5ef-b21f-47fe-866d-dab619241b74 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B11_667216.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-10A TCGA-B6-A0I5-10A-01D-A037-01 8692a5ef-b21f-47fe-866d-dab619241b74 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B11_667216.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-10A TCGA-B6-A0I5-10A-01D-A037-01 8692a5ef-b21f-47fe-866d-dab619241b74 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B11_667216.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-10A TCGA-B6-A0I5-10A-01D-A037-01 8692a5ef-b21f-47fe-866d-dab619241b74 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B11_667216.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-10A TCGA-B6-A0I5-10A-01D-A037-01 8692a5ef-b21f-47fe-866d-dab619241b74 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B11_667216.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-10A TCGA-B6-A0I5-10A-01D-A046-08 85735100-59f8-4235-942e-ad3dd5563b09 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-10A TCGA-B6-A0I5-10A-01D-A047-09 66d1523d-8cf6-4e42-8d10-48fe96a64c02 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-10A TCGA-B6-A0I5-10A-01W-A053-08 032c284b-6734-4804-921d-3c3c86a42347 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-10A TCGA-B6-A0I5-10A-01W-A055-09 2a5bbcf0-d39c-4f1b-a200-f778e586d42e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-10A TCGA-B6-A0I5-10A-01W-A055-09 2a5bbcf0-d39c-4f1b-a200-f778e586d42e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-10A TCGA-B6-A0I5-10A-01W-A055-09 2a5bbcf0-d39c-4f1b-a200-f778e586d42e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-10A TCGA-B6-A0I5-10A-01X-A052-08 595dcb79-3bf1-41f4-89ec-4844f322d87b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I5 TCGA-B6-A0I5-10A TCGA-B6-A0I5-10A-01X-A054-09 78ffc700-7db3-480d-800a-1af14dbb59cd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11D-A032-05 362b01ac-3711-4359-aa23-f5c23df51249 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11D-A032-05 362b01ac-3711-4359-aa23-f5c23df51249 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-B6-A0I6-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11D-A032-05 362b01ac-3711-4359-aa23-f5c23df51249 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-B6-A0I6-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11D-A032-05 362b01ac-3711-4359-aa23-f5c23df51249 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-B6-A0I6-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11D-A033-02 803fd2dc-51ff-4727-b4c2-2f03ea5c4dc9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11D-A036-01 ba92130c-fd4f-492f-b4c8-8420a9d017f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11D-A036-01 ba92130c-fd4f-492f-b4c8-8420a9d017f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11D-A036-01 ba92130c-fd4f-492f-b4c8-8420a9d017f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11D-A036-01 ba92130c-fd4f-492f-b4c8-8420a9d017f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11D-A036-01 ba92130c-fd4f-492f-b4c8-8420a9d017f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11D-A036-01 ba92130c-fd4f-492f-b4c8-8420a9d017f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11D-A036-01 ba92130c-fd4f-492f-b4c8-8420a9d017f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11D-A036-01 ba92130c-fd4f-492f-b4c8-8420a9d017f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A10_667202.seg.data.txt'. TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11D-A044-08 a77ae2d7-e1e1-450f-9965-67ff2c3c8f1e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11D-A045-09 6a8ffffb-0860-4f5a-be23-0e531e236c4a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11D-A128-09 a876398c-5b1d-444f-a360-5fe2db697480 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11D-A128-09 a876398c-5b1d-444f-a360-5fe2db697480 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11R-A034-07 09c248f8-cdd7-4c13-9085-26c56544bcf7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11R-A034-07 09c248f8-cdd7-4c13-9085-26c56544bcf7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012118_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11R-A034-07 09c248f8-cdd7-4c13-9085-26c56544bcf7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012118_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11R-A034-07 09c248f8-cdd7-4c13-9085-26c56544bcf7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012118_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11R-A034-07 09c248f8-cdd7-4c13-9085-26c56544bcf7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_475966.TCGA-B6-A0I6-01A-11R-A034-07.110412_UNC13-SN749_0051_AB0168ABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11R-A034-07 09c248f8-cdd7-4c13-9085-26c56544bcf7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476045.TCGA-B6-A0I6-01A-11R-A034-07.110412_UNC13-SN749_0051_AB0168ABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11R-A034-07 09c248f8-cdd7-4c13-9085-26c56544bcf7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476281.TCGA-B6-A0I6-01A-11R-A034-07.110412_UNC13-SN749_0051_AB0168ABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11R-A035-13 db5aa4f0-9207-4854-a11b-f69fcd74aee7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11R-A035-13 db5aa4f0-9207-4854-a11b-f69fcd74aee7 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0I6-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11R-A035-13 db5aa4f0-9207-4854-a11b-f69fcd74aee7 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0I6-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11W-A050-09 e06d2499-82d9-4ced-bf13-79c6738a00d3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11W-A051-08 01d288fb-b0ea-4c3d-9405-f94909e0d0f3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11W-A100-09 c4bc479e-97aa-4b67-bf96-52ebf695c33b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11X-A048-08 88f90c17-af1c-48ce-8113-8366451ca20b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-01A TCGA-B6-A0I6-01A-11X-A049-09 411bd4e1-891a-4239-b59a-5cb1ab385362 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-10A TCGA-B6-A0I6-10A-01D-A031-02 d5a10271-a55a-444b-96e9-83b20aa2ba91 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-10A TCGA-B6-A0I6-10A-01D-A037-01 3b549abe-bbac-4422-9f3c-121d8252979b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-10A TCGA-B6-A0I6-10A-01D-A037-01 3b549abe-bbac-4422-9f3c-121d8252979b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B02_667106.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0I6 TCGA-B6-A0I6-10A TCGA-B6-A0I6-10A-01D-A037-01 3b549abe-bbac-4422-9f3c-121d8252979b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B02_667106.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-10A TCGA-B6-A0I6-10A-01D-A037-01 3b549abe-bbac-4422-9f3c-121d8252979b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B02_667106.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-10A TCGA-B6-A0I6-10A-01D-A037-01 3b549abe-bbac-4422-9f3c-121d8252979b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B02_667106.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-10A TCGA-B6-A0I6-10A-01D-A037-01 3b549abe-bbac-4422-9f3c-121d8252979b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B02_667106.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-10A TCGA-B6-A0I6-10A-01D-A037-01 3b549abe-bbac-4422-9f3c-121d8252979b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B02_667106.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-10A TCGA-B6-A0I6-10A-01D-A037-01 3b549abe-bbac-4422-9f3c-121d8252979b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B02_667106.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-10A TCGA-B6-A0I6-10A-01D-A037-01 3b549abe-bbac-4422-9f3c-121d8252979b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B02_667106.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-10A TCGA-B6-A0I6-10A-01D-A046-08 34d6a49a-8f0a-4e9e-8da8-c6e2f8cafab0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-10A TCGA-B6-A0I6-10A-01D-A047-09 1dbaf39e-b8d6-4e30-8481-dbfe5d6f2b9f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-10A TCGA-B6-A0I6-10A-01D-A128-09 e582a24d-98bf-40d3-bbc8-e8823a28127f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-10A TCGA-B6-A0I6-10A-01W-A053-08 7c62e7fd-4c47-4af8-bfdd-b682f9c35c50 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-10A TCGA-B6-A0I6-10A-01W-A055-09 b4a473ab-e3f9-4827-b4fc-30038f3cf711 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-10A TCGA-B6-A0I6-10A-01W-A055-09 b4a473ab-e3f9-4827-b4fc-30038f3cf711 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-10A TCGA-B6-A0I6-10A-01X-A052-08 f59fd8e9-439c-4c56-810a-b6f0819556cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I6 TCGA-B6-A0I6-10A TCGA-B6-A0I6-10A-01X-A054-09 3a7cf891-f7ae-4444-ac98-ce20312fbdb0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11D-A032-05 b64208bf-0a54-4266-964e-95054bc6edd5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11D-A032-05 b64208bf-0a54-4266-964e-95054bc6edd5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-B6-A0I8-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11D-A032-05 b64208bf-0a54-4266-964e-95054bc6edd5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-B6-A0I8-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11D-A032-05 b64208bf-0a54-4266-964e-95054bc6edd5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-B6-A0I8-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11D-A033-02 6deb10bd-c439-46f4-ac03-c27ed250c488 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11D-A036-01 20605d45-0b1d-4c98-a2fe-8ad7e9f81b22 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11D-A036-01 20605d45-0b1d-4c98-a2fe-8ad7e9f81b22 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11D-A036-01 20605d45-0b1d-4c98-a2fe-8ad7e9f81b22 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11D-A036-01 20605d45-0b1d-4c98-a2fe-8ad7e9f81b22 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11D-A036-01 20605d45-0b1d-4c98-a2fe-8ad7e9f81b22 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11D-A036-01 20605d45-0b1d-4c98-a2fe-8ad7e9f81b22 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11D-A036-01 20605d45-0b1d-4c98-a2fe-8ad7e9f81b22 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11D-A036-01 20605d45-0b1d-4c98-a2fe-8ad7e9f81b22 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B09_667188.seg.data.txt'. TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11D-A044-08 576310d5-2e3e-4d3f-a22d-1d91c3ad9058 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11D-A045-09 6345bd54-d635-4f01-917f-cbeb283040bc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11R-A034-07 c71ca9f7-248f-460c-b5d3-afb2c648fef2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11R-A034-07 c71ca9f7-248f-460c-b5d3-afb2c648fef2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012097_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11R-A034-07 c71ca9f7-248f-460c-b5d3-afb2c648fef2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012097_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11R-A034-07 c71ca9f7-248f-460c-b5d3-afb2c648fef2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012097_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11R-A034-07 c71ca9f7-248f-460c-b5d3-afb2c648fef2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476216.TCGA-B6-A0I8-01A-11R-A034-07.110412_UNC13-SN749_0051_AB0168ABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11R-A034-07 c71ca9f7-248f-460c-b5d3-afb2c648fef2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476269.TCGA-B6-A0I8-01A-11R-A034-07.110412_UNC13-SN749_0051_AB0168ABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11R-A034-07 c71ca9f7-248f-460c-b5d3-afb2c648fef2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476553.TCGA-B6-A0I8-01A-11R-A034-07.110412_UNC13-SN749_0051_AB0168ABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11R-A035-13 991b63d0-6859-4475-9961-bec08649aff3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11R-A035-13 991b63d0-6859-4475-9961-bec08649aff3 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0I8-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11R-A035-13 991b63d0-6859-4475-9961-bec08649aff3 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0I8-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11W-A050-09 ba80b13a-e20a-441b-b845-b617cc861ce7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11W-A050-09 ba80b13a-e20a-441b-b845-b617cc861ce7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11W-A050-09 ba80b13a-e20a-441b-b845-b617cc861ce7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11W-A051-08 3047ff4a-a69b-4eb1-b653-e8d84983379f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11X-A048-08 f6448552-28f0-4739-9f7f-4433ef291149 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-01A TCGA-B6-A0I8-01A-11X-A049-09 f95dcb74-8c8d-48c8-832d-ab3dfd8fb6a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-10A TCGA-B6-A0I8-10A-01D-A031-02 c8340424-3184-485c-85a1-a88c14a316da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-10A TCGA-B6-A0I8-10A-01D-A037-01 ed9f7c7b-ee8c-41cd-8bf0-271c7b104d76 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-10A TCGA-B6-A0I8-10A-01D-A037-01 ed9f7c7b-ee8c-41cd-8bf0-271c7b104d76 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E12_667170.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0I8 TCGA-B6-A0I8-10A TCGA-B6-A0I8-10A-01D-A037-01 ed9f7c7b-ee8c-41cd-8bf0-271c7b104d76 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E12_667170.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-10A TCGA-B6-A0I8-10A-01D-A037-01 ed9f7c7b-ee8c-41cd-8bf0-271c7b104d76 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E12_667170.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-10A TCGA-B6-A0I8-10A-01D-A037-01 ed9f7c7b-ee8c-41cd-8bf0-271c7b104d76 SNP Genome_Wide_SNP_6 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1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-10A TCGA-B6-A0I8-10A-01W-A055-09 4ff30155-adbf-49dd-a3f2-d040142f0b6f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-10A TCGA-B6-A0I8-10A-01W-A055-09 4ff30155-adbf-49dd-a3f2-d040142f0b6f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-10A TCGA-B6-A0I8-10A-01X-A052-08 36c556f8-99d7-4e17-ae5f-46f1e3511623 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I8 TCGA-B6-A0I8-10A TCGA-B6-A0I8-10A-01X-A054-09 343c0a54-ec02-4a26-a8f2-583c54d18012 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I9 TCGA-B6-A0I9-01A TCGA-B6-A0I9-01A-11D-A032-05 85ec31a0-1293-4c4f-b339-27e3ce924b62 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I9 TCGA-B6-A0I9-01A TCGA-B6-A0I9-01A-11D-A036-01 947bb0f4-c580-43da-967d-1026abbd4e32 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I9 TCGA-B6-A0I9-01A TCGA-B6-A0I9-01A-11D-A036-01 947bb0f4-c580-43da-967d-1026abbd4e32 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G02_667138.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0I9 TCGA-B6-A0I9-01A TCGA-B6-A0I9-01A-11D-A036-01 947bb0f4-c580-43da-967d-1026abbd4e32 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G02_667138.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I9 TCGA-B6-A0I9-01A TCGA-B6-A0I9-01A-11D-A036-01 947bb0f4-c580-43da-967d-1026abbd4e32 SNP Genome_Wide_SNP_6 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TCGA-B6-A0I9-01A-11R-A034-07 1a99c4ba-6948-4054-96cd-62164ff4a6f0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012111_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-B6-A0I9 TCGA-B6-A0I9-01A TCGA-B6-A0I9-01A-11R-A034-07 1a99c4ba-6948-4054-96cd-62164ff4a6f0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476249.TCGA-B6-A0I9-01A-11R-A034-07.110412_UNC13-SN749_0051_AB0168ABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0I9 TCGA-B6-A0I9-01A TCGA-B6-A0I9-01A-11R-A034-07 1a99c4ba-6948-4054-96cd-62164ff4a6f0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476263.TCGA-B6-A0I9-01A-11R-A034-07.110412_UNC13-SN749_0051_AB0168ABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0I9 TCGA-B6-A0I9-01A TCGA-B6-A0I9-01A-11R-A034-07 1a99c4ba-6948-4054-96cd-62164ff4a6f0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476273.TCGA-B6-A0I9-01A-11R-A034-07.110412_UNC13-SN749_0051_AB0168ABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0I9 TCGA-B6-A0I9-01A TCGA-B6-A0I9-01A-11R-A035-13 47df047f-f43b-4099-8cb5-42a786d66411 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I9 TCGA-B6-A0I9-01A TCGA-B6-A0I9-01A-11R-A035-13 47df047f-f43b-4099-8cb5-42a786d66411 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0I9-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0I9 TCGA-B6-A0I9-01A TCGA-B6-A0I9-01A-11R-A035-13 47df047f-f43b-4099-8cb5-42a786d66411 miRNASeq IlluminaGA_miRNASeq 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1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I9 TCGA-B6-A0I9-10A TCGA-B6-A0I9-10A-01D-A031-02 5e5beb0f-146f-4aef-ab6f-1ad70b6b7cee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I9 TCGA-B6-A0I9-10A TCGA-B6-A0I9-10A-01D-A037-01 489df8b4-1819-4992-b698-1c57f9ee4962 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I9 TCGA-B6-A0I9-10A TCGA-B6-A0I9-10A-01D-A037-01 489df8b4-1819-4992-b698-1c57f9ee4962 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D11_667058.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0I9 TCGA-B6-A0I9-10A TCGA-B6-A0I9-10A-01D-A037-01 489df8b4-1819-4992-b698-1c57f9ee4962 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D11_667058.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I9 TCGA-B6-A0I9-10A TCGA-B6-A0I9-10A-01D-A037-01 489df8b4-1819-4992-b698-1c57f9ee4962 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D11_667058.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I9 TCGA-B6-A0I9-10A TCGA-B6-A0I9-10A-01D-A037-01 489df8b4-1819-4992-b698-1c57f9ee4962 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D11_667058.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I9 TCGA-B6-A0I9-10A TCGA-B6-A0I9-10A-01D-A037-01 489df8b4-1819-4992-b698-1c57f9ee4962 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D11_667058.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I9 TCGA-B6-A0I9-10A TCGA-B6-A0I9-10A-01D-A037-01 489df8b4-1819-4992-b698-1c57f9ee4962 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D11_667058.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I9 TCGA-B6-A0I9-10A TCGA-B6-A0I9-10A-01D-A037-01 489df8b4-1819-4992-b698-1c57f9ee4962 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D11_667058.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0I9 TCGA-B6-A0I9-10A TCGA-B6-A0I9-10A-01D-A037-01 489df8b4-1819-4992-b698-1c57f9ee4962 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D11_667058.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-B6-A0I9 TCGA-B6-A0I9-10A TCGA-B6-A0I9-10A-01D-A046-08 e553cc82-c38b-4445-9144-ad6a8a262681 Complete Clinical Set bio 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1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I9 TCGA-B6-A0I9-10A TCGA-B6-A0I9-10A-01W-A055-09 eba08b28-762e-4d9d-a5ee-c180ce7621ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I9 TCGA-B6-A0I9-10A TCGA-B6-A0I9-10A-01W-A055-09 eba08b28-762e-4d9d-a5ee-c180ce7621ec Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0I9 TCGA-B6-A0I9-10A TCGA-B6-A0I9-10A-01W-A055-09 eba08b28-762e-4d9d-a5ee-c180ce7621ec Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0I9 TCGA-B6-A0I9-10A TCGA-B6-A0I9-10A-01X-A052-08 1c26ffdd-cf6a-45f2-b627-3141a830bd51 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0I9 TCGA-B6-A0I9-10A TCGA-B6-A0I9-10A-01X-A054-09 1324b65a-ffe9-41c4-80bb-38dbc701c0a8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0I9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-01A TCGA-B6-A0IA-01A-11D-A032-05 8d86bb8c-cc51-429a-aabd-4a33b200ce97 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-01A TCGA-B6-A0IA-01A-11D-A032-05 8d86bb8c-cc51-429a-aabd-4a33b200ce97 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-B6-A0IA-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-01A TCGA-B6-A0IA-01A-11D-A032-05 8d86bb8c-cc51-429a-aabd-4a33b200ce97 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-B6-A0IA-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-01A TCGA-B6-A0IA-01A-11D-A032-05 8d86bb8c-cc51-429a-aabd-4a33b200ce97 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-B6-A0IA-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-01A TCGA-B6-A0IA-01A-11D-A033-02 68ca279a-4b0b-47e4-959c-85e9094e3604 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-01A TCGA-B6-A0IA-01A-11D-A036-01 8b4314b3-0f2a-4451-87ff-ad498c7a1ab9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-01A TCGA-B6-A0IA-01A-11D-A036-01 8b4314b3-0f2a-4451-87ff-ad498c7a1ab9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D03_667110.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0IA TCGA-B6-A0IA-01A TCGA-B6-A0IA-01A-11D-A036-01 8b4314b3-0f2a-4451-87ff-ad498c7a1ab9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D03_667110.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-01A TCGA-B6-A0IA-01A-11D-A036-01 8b4314b3-0f2a-4451-87ff-ad498c7a1ab9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D03_667110.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-01A TCGA-B6-A0IA-01A-11D-A036-01 8b4314b3-0f2a-4451-87ff-ad498c7a1ab9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D03_667110.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-01A TCGA-B6-A0IA-01A-11D-A036-01 8b4314b3-0f2a-4451-87ff-ad498c7a1ab9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D03_667110.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-01A TCGA-B6-A0IA-01A-11D-A036-01 8b4314b3-0f2a-4451-87ff-ad498c7a1ab9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D03_667110.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-01A TCGA-B6-A0IA-01A-11D-A036-01 8b4314b3-0f2a-4451-87ff-ad498c7a1ab9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D03_667110.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-01A TCGA-B6-A0IA-01A-11D-A036-01 8b4314b3-0f2a-4451-87ff-ad498c7a1ab9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D03_667110.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-01A TCGA-B6-A0IA-01A-11D-A044-08 3d5b4054-e0e5-40e4-b772-629afdb8e0a8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-01A TCGA-B6-A0IA-01A-11D-A045-09 269851a0-323a-49ea-bb89-6e49b98d27e3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-01A TCGA-B6-A0IA-01A-11R-A034-07 80cfaf9d-f0aa-4a35-918a-2eaad05b3a5a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-01A TCGA-B6-A0IA-01A-11R-A034-07 80cfaf9d-f0aa-4a35-918a-2eaad05b3a5a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012098_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-B6-A0IA TCGA-B6-A0IA-01A TCGA-B6-A0IA-01A-11R-A034-07 80cfaf9d-f0aa-4a35-918a-2eaad05b3a5a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012098_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-B6-A0IA TCGA-B6-A0IA-01A TCGA-B6-A0IA-01A-11R-A034-07 80cfaf9d-f0aa-4a35-918a-2eaad05b3a5a Expression-Genes AgilentG4502A_07_3 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-01A TCGA-B6-A0IA-01A-11W-A050-09 f7e5ada6-8f53-4765-a874-5ee9d258ad6a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-01A TCGA-B6-A0IA-01A-11W-A051-08 1d23b155-df74-4ab4-ad51-59c6a79ec7dc Complete Clinical Set bio 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1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-10A TCGA-B6-A0IA-10A-01D-A031-02 4ea541e8-83a9-4d38-8d91-62329693ab5b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-10A TCGA-B6-A0IA-10A-01D-A037-01 6099225e-8be5-4a60-9b09-76bd3c97775d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-10A TCGA-B6-A0IA-10A-01D-A037-01 6099225e-8be5-4a60-9b09-76bd3c97775d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E06_667172.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0IA TCGA-B6-A0IA-10A TCGA-B6-A0IA-10A-01D-A037-01 6099225e-8be5-4a60-9b09-76bd3c97775d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E06_667172.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-10A TCGA-B6-A0IA-10A-01D-A037-01 6099225e-8be5-4a60-9b09-76bd3c97775d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E06_667172.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-10A TCGA-B6-A0IA-10A-01D-A037-01 6099225e-8be5-4a60-9b09-76bd3c97775d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E06_667172.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-10A TCGA-B6-A0IA-10A-01D-A037-01 6099225e-8be5-4a60-9b09-76bd3c97775d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E06_667172.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-10A TCGA-B6-A0IA-10A-01D-A037-01 6099225e-8be5-4a60-9b09-76bd3c97775d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E06_667172.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-10A TCGA-B6-A0IA-10A-01D-A037-01 6099225e-8be5-4a60-9b09-76bd3c97775d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E06_667172.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-10A TCGA-B6-A0IA-10A-01D-A037-01 6099225e-8be5-4a60-9b09-76bd3c97775d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E06_667172.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-10A TCGA-B6-A0IA-10A-01D-A046-08 e2aa51a2-e29a-494a-91b6-fd0da5f1e95c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-10A TCGA-B6-A0IA-10A-01D-A047-09 3198ff37-5f9f-4ec2-83a6-5bacef6b6bfb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-10A TCGA-B6-A0IA-10A-01W-A053-08 8fbcfe49-3871-4d7e-85d8-03cbbeed90a8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-10A TCGA-B6-A0IA-10A-01W-A055-09 5b3fdff1-5930-419f-a5e4-46554ae2f80f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-10A TCGA-B6-A0IA-10A-01W-A055-09 5b3fdff1-5930-419f-a5e4-46554ae2f80f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-10A TCGA-B6-A0IA-10A-01W-A055-09 5b3fdff1-5930-419f-a5e4-46554ae2f80f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-10A TCGA-B6-A0IA-10A-01X-A052-08 fb9e5e35-949b-4fef-896e-6ec93bc0008a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IA TCGA-B6-A0IA-10A TCGA-B6-A0IA-10A-01X-A054-09 304ee3bb-0c2f-4b70-bcd2-35d8bccc1643 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-01A TCGA-B6-A0IB-01A-11D-A032-05 458089f0-b8a3-4e7c-abec-c6ddbc9cab96 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-01A TCGA-B6-A0IB-01A-11D-A032-05 458089f0-b8a3-4e7c-abec-c6ddbc9cab96 DNA Methylation HumanMethylation27 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-01A TCGA-B6-A0IB-01A-11D-A036-01 b7d03467-5de2-47e1-9f1b-2ab9e2a968f4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C05_667088.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0IB TCGA-B6-A0IB-01A TCGA-B6-A0IB-01A-11D-A036-01 b7d03467-5de2-47e1-9f1b-2ab9e2a968f4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C05_667088.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-01A TCGA-B6-A0IB-01A-11D-A036-01 b7d03467-5de2-47e1-9f1b-2ab9e2a968f4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C05_667088.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-01A TCGA-B6-A0IB-01A-11D-A036-01 b7d03467-5de2-47e1-9f1b-2ab9e2a968f4 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C05_667088.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-01A TCGA-B6-A0IB-01A-11D-A044-08 2961583e-2a9d-44c4-a6af-6680624cea28 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-01A TCGA-B6-A0IB-01A-11D-A045-09 d290b1a1-f475-4471-9eb9-2120e59f432a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-01A TCGA-B6-A0IB-01A-11R-A034-07 9857acef-08eb-43d6-b086-4b513e23753a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-01A TCGA-B6-A0IB-01A-11R-A034-07 9857acef-08eb-43d6-b086-4b513e23753a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012099_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-B6-A0IB TCGA-B6-A0IB-01A TCGA-B6-A0IB-01A-11R-A034-07 9857acef-08eb-43d6-b086-4b513e23753a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012099_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-B6-A0IB TCGA-B6-A0IB-01A TCGA-B6-A0IB-01A-11R-A034-07 9857acef-08eb-43d6-b086-4b513e23753a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012099_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-B6-A0IB TCGA-B6-A0IB-01A TCGA-B6-A0IB-01A-11R-A034-07 9857acef-08eb-43d6-b086-4b513e23753a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476002.TCGA-B6-A0IB-01A-11R-A034-07.110412_UNC13-SN749_0051_AB0168ABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-01A TCGA-B6-A0IB-01A-11R-A034-07 9857acef-08eb-43d6-b086-4b513e23753a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476060.TCGA-B6-A0IB-01A-11R-A034-07.110412_UNC13-SN749_0051_AB0168ABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-01A TCGA-B6-A0IB-01A-11R-A034-07 9857acef-08eb-43d6-b086-4b513e23753a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476340.TCGA-B6-A0IB-01A-11R-A034-07.110412_UNC13-SN749_0051_AB0168ABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-01A TCGA-B6-A0IB-01A-11R-A035-13 833aedda-e7f5-4981-a084-3f02f6e12b58 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-01A TCGA-B6-A0IB-01A-11R-A035-13 833aedda-e7f5-4981-a084-3f02f6e12b58 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0IB-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-01A TCGA-B6-A0IB-01A-11R-A035-13 833aedda-e7f5-4981-a084-3f02f6e12b58 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0IB-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-01A TCGA-B6-A0IB-01A-11W-A050-09 ff80d5cd-7aed-499f-a472-153cc40f65de Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-01A TCGA-B6-A0IB-01A-11W-A050-09 ff80d5cd-7aed-499f-a472-153cc40f65de Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-01A TCGA-B6-A0IB-01A-11W-A050-09 ff80d5cd-7aed-499f-a472-153cc40f65de Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-01A TCGA-B6-A0IB-01A-11W-A051-08 b6e8267c-c0fc-4e47-93b7-aba90664b4e4 Complete Clinical Set bio 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1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-10A TCGA-B6-A0IB-10A-01D-A031-02 b7a47c6b-5ce0-43d7-b29b-f942c8986dbe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-10A TCGA-B6-A0IB-10A-01D-A037-01 56dacd66-e995-44ce-9e52-02dd5994b69c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-10A TCGA-B6-A0IB-10A-01D-A037-01 56dacd66-e995-44ce-9e52-02dd5994b69c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F03_667180.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0IB TCGA-B6-A0IB-10A TCGA-B6-A0IB-10A-01D-A037-01 56dacd66-e995-44ce-9e52-02dd5994b69c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F03_667180.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-10A TCGA-B6-A0IB-10A-01D-A037-01 56dacd66-e995-44ce-9e52-02dd5994b69c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F03_667180.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-10A TCGA-B6-A0IB-10A-01D-A037-01 56dacd66-e995-44ce-9e52-02dd5994b69c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F03_667180.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-10A TCGA-B6-A0IB-10A-01D-A037-01 56dacd66-e995-44ce-9e52-02dd5994b69c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F03_667180.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-10A TCGA-B6-A0IB-10A-01D-A037-01 56dacd66-e995-44ce-9e52-02dd5994b69c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F03_667180.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-10A TCGA-B6-A0IB-10A-01D-A037-01 56dacd66-e995-44ce-9e52-02dd5994b69c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F03_667180.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-10A TCGA-B6-A0IB-10A-01D-A037-01 56dacd66-e995-44ce-9e52-02dd5994b69c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F03_667180.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-10A TCGA-B6-A0IB-10A-01D-A046-08 a2b2e6c8-47a2-4a6b-ba37-c82093c01fab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-10A TCGA-B6-A0IB-10A-01D-A047-09 7fedb85e-1ead-4176-bbd5-a6a43bb9a79a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-10A TCGA-B6-A0IB-10A-01W-A053-08 b9a21aab-d4f8-4d72-85ce-18ac3e961e98 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-10A TCGA-B6-A0IB-10A-01W-A055-09 0caeac20-293e-4c97-8074-3f9d78e5ef3e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-10A TCGA-B6-A0IB-10A-01W-A055-09 0caeac20-293e-4c97-8074-3f9d78e5ef3e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-10A TCGA-B6-A0IB-10A-01W-A055-09 0caeac20-293e-4c97-8074-3f9d78e5ef3e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-10A TCGA-B6-A0IB-10A-01X-A052-08 99b0c2b8-d4ae-4dc9-a68d-064cde31d8d5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IB TCGA-B6-A0IB-10A TCGA-B6-A0IB-10A-01X-A054-09 70c9777c-4e21-46fb-9ced-a1716f11669b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11D-A032-05 f306aebb-0e5e-425c-a8a0-866846aa500c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11D-A032-05 f306aebb-0e5e-425c-a8a0-866846aa500c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-B6-A0IC-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11D-A032-05 f306aebb-0e5e-425c-a8a0-866846aa500c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-B6-A0IC-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11D-A032-05 f306aebb-0e5e-425c-a8a0-866846aa500c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-B6-A0IC-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11D-A033-02 d6cb2aff-43ca-4cfc-8666-f362b202b592 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11D-A036-01 3f92a9cb-5bd0-44b4-bc75-efe4b8c29b92 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11D-A036-01 3f92a9cb-5bd0-44b4-bc75-efe4b8c29b92 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F09_667132.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11D-A036-01 3f92a9cb-5bd0-44b4-bc75-efe4b8c29b92 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F09_667132.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11D-A036-01 3f92a9cb-5bd0-44b4-bc75-efe4b8c29b92 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F09_667132.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11D-A036-01 3f92a9cb-5bd0-44b4-bc75-efe4b8c29b92 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F09_667132.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11D-A036-01 3f92a9cb-5bd0-44b4-bc75-efe4b8c29b92 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F09_667132.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11D-A036-01 3f92a9cb-5bd0-44b4-bc75-efe4b8c29b92 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F09_667132.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11D-A036-01 3f92a9cb-5bd0-44b4-bc75-efe4b8c29b92 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F09_667132.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11D-A036-01 3f92a9cb-5bd0-44b4-bc75-efe4b8c29b92 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F09_667132.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11D-A044-08 e43b018f-dd35-4064-8b6b-808f9723da06 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11D-A045-09 563dcf0e-295c-4e3f-8bba-222b81a4e6ab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11R-A034-07 718599d7-723a-4121-ac07-51120cde9af1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11R-A034-07 718599d7-723a-4121-ac07-51120cde9af1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012119_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11R-A034-07 718599d7-723a-4121-ac07-51120cde9af1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012119_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11R-A034-07 718599d7-723a-4121-ac07-51120cde9af1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012119_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11R-A034-07 718599d7-723a-4121-ac07-51120cde9af1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_475980.TCGA-B6-A0IC-01A-11R-A034-07.110412_UNC13-SN749_0051_AB0168ABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11R-A034-07 718599d7-723a-4121-ac07-51120cde9af1 RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11R-A035-13 b12cda74-97f7-4131-afd3-86ede8a134a1 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0IC-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11R-A035-13 b12cda74-97f7-4131-afd3-86ede8a134a1 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0IC-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11W-A050-09 f23fd730-0a18-4e3b-a2ed-f1a4231c2b53 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11W-A050-09 f23fd730-0a18-4e3b-a2ed-f1a4231c2b53 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11W-A051-08 c80f3a2c-253b-4b23-bcf3-d07559822619 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11X-A048-08 db4f665b-ff14-482a-8297-d60f9ebcbe3e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-01A TCGA-B6-A0IC-01A-11X-A049-09 b7490b53-be9d-445f-82cb-a64b55d85f84 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-10A TCGA-B6-A0IC-10A-01D-A031-02 30d0e28b-77b0-4eb8-bef3-5ef81d9d2179 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-10A TCGA-B6-A0IC-10A-01D-A037-01 ac492fd6-77a0-4882-86d5-84132d784f43 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-10A TCGA-B6-A0IC-10A-01D-A037-01 ac492fd6-77a0-4882-86d5-84132d784f43 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B03_667206.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0IC TCGA-B6-A0IC-10A TCGA-B6-A0IC-10A-01D-A037-01 ac492fd6-77a0-4882-86d5-84132d784f43 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B03_667206.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-10A TCGA-B6-A0IC-10A-01D-A037-01 ac492fd6-77a0-4882-86d5-84132d784f43 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B03_667206.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-10A TCGA-B6-A0IC-10A-01D-A037-01 ac492fd6-77a0-4882-86d5-84132d784f43 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B03_667206.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-10A TCGA-B6-A0IC-10A-01D-A037-01 ac492fd6-77a0-4882-86d5-84132d784f43 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B03_667206.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-10A TCGA-B6-A0IC-10A-01D-A037-01 ac492fd6-77a0-4882-86d5-84132d784f43 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B03_667206.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-10A TCGA-B6-A0IC-10A-01D-A037-01 ac492fd6-77a0-4882-86d5-84132d784f43 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B03_667206.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-10A TCGA-B6-A0IC-10A-01D-A037-01 ac492fd6-77a0-4882-86d5-84132d784f43 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B03_667206.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-10A TCGA-B6-A0IC-10A-01D-A046-08 f87097a7-b0ca-4bd9-a594-9ca5546f2a49 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-10A TCGA-B6-A0IC-10A-01D-A047-09 cdb759b1-5f87-4170-9e7f-72d0ace28ffc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-10A TCGA-B6-A0IC-10A-01W-A053-08 3a1ccaff-f2bb-4178-a7e6-61e9b5d78212 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-10A TCGA-B6-A0IC-10A-01W-A055-09 4882294f-dbab-4a58-a2b9-aa53b02158f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-10A TCGA-B6-A0IC-10A-01W-A055-09 4882294f-dbab-4a58-a2b9-aa53b02158f7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-10A TCGA-B6-A0IC-10A-01X-A052-08 68fb2083-aa31-4514-a72d-11d7b23e0459 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IC TCGA-B6-A0IC-10A TCGA-B6-A0IC-10A-01X-A054-09 115b34de-b4d1-48a9-83fb-6bbc64a2ab07 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IE TCGA-B6-A0IE-01A TCGA-B6-A0IE-01A-11D-A032-05 88bf4583-a439-44e0-8f70-4b094996871a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IE TCGA-B6-A0IE-01A TCGA-B6-A0IE-01A-11D-A032-05 88bf4583-a439-44e0-8f70-4b094996871a DNA Methylation HumanMethylation27 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-B6-A0IE-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-B6-A0IE TCGA-B6-A0IE-01A TCGA-B6-A0IE-01A-11D-A033-02 6e5cdd94-e25f-4c58-b31f-22b3e9475164 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IE TCGA-B6-A0IE-01A TCGA-B6-A0IE-01A-11D-A036-01 0716b4fb-1209-4a73-b14f-245d7277c7f3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IE TCGA-B6-A0IE-01A TCGA-B6-A0IE-01A-11D-A036-01 0716b4fb-1209-4a73-b14f-245d7277c7f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D08_667142.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0IE TCGA-B6-A0IE-01A TCGA-B6-A0IE-01A-11D-A036-01 0716b4fb-1209-4a73-b14f-245d7277c7f3 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0IE TCGA-B6-A0IE-01A TCGA-B6-A0IE-01A-11W-A050-09 4cb39f50-5031-4b08-baa3-1a366ada6514 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0IE TCGA-B6-A0IE-01A TCGA-B6-A0IE-01A-11W-A051-08 4a6b75a3-66fa-4378-b229-65011c824ce2 Complete Clinical Set bio 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1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IE TCGA-B6-A0IE-10A TCGA-B6-A0IE-10A-01D-A031-02 db96bcea-3b8e-4ee8-b95c-8f1faa7b2e23 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IE TCGA-B6-A0IE-10A TCGA-B6-A0IE-10A-01D-A037-01 7e6b3fec-8a5f-49ae-8924-81bc7857c6f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IE TCGA-B6-A0IE-10A TCGA-B6-A0IE-10A-01D-A037-01 7e6b3fec-8a5f-49ae-8924-81bc7857c6f8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C08_667196.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0IE TCGA-B6-A0IE-10A TCGA-B6-A0IE-10A-01D-A037-01 7e6b3fec-8a5f-49ae-8924-81bc7857c6f8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C08_667196.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IE TCGA-B6-A0IE-10A TCGA-B6-A0IE-10A-01D-A037-01 7e6b3fec-8a5f-49ae-8924-81bc7857c6f8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C08_667196.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IE TCGA-B6-A0IE-10A TCGA-B6-A0IE-10A-01D-A037-01 7e6b3fec-8a5f-49ae-8924-81bc7857c6f8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C08_667196.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IE TCGA-B6-A0IE-10A TCGA-B6-A0IE-10A-01D-A037-01 7e6b3fec-8a5f-49ae-8924-81bc7857c6f8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C08_667196.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IE TCGA-B6-A0IE-10A TCGA-B6-A0IE-10A-01D-A037-01 7e6b3fec-8a5f-49ae-8924-81bc7857c6f8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C08_667196.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IE TCGA-B6-A0IE-10A TCGA-B6-A0IE-10A-01D-A037-01 7e6b3fec-8a5f-49ae-8924-81bc7857c6f8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C08_667196.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IE TCGA-B6-A0IE-10A TCGA-B6-A0IE-10A-01D-A037-01 7e6b3fec-8a5f-49ae-8924-81bc7857c6f8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C08_667196.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-B6-A0IE TCGA-B6-A0IE-10A TCGA-B6-A0IE-10A-01D-A046-08 a5895ff1-8347-439c-8c62-ef09a7750c46 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IE TCGA-B6-A0IE-10A TCGA-B6-A0IE-10A-01D-A047-09 7e7224a1-2d61-4c58-8b7b-c9b05bb67e0c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IE TCGA-B6-A0IE-10A TCGA-B6-A0IE-10A-01W-A053-08 ad138333-e5d8-4f5a-b339-9c1a3990758e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IE TCGA-B6-A0IE-10A TCGA-B6-A0IE-10A-01W-A055-09 513424ac-0f6a-498a-b610-34f825d7dc63 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IE TCGA-B6-A0IE-10A TCGA-B6-A0IE-10A-01W-A055-09 513424ac-0f6a-498a-b610-34f825d7dc63 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0IE TCGA-B6-A0IE-10A TCGA-B6-A0IE-10A-01W-A055-09 513424ac-0f6a-498a-b610-34f825d7dc63 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0IE TCGA-B6-A0IE-10A TCGA-B6-A0IE-10A-01X-A052-08 1ad9d08e-79d5-44e2-a4ba-054b9eb379c5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IE TCGA-B6-A0IE-10A TCGA-B6-A0IE-10A-01X-A054-09 b2c8ccf5-00df-4fd3-a9b5-f9e540989c5d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11D-A032-05 baaa2b31-0e59-4f7d-81eb-125d8b03baa6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11D-A032-05 baaa2b31-0e59-4f7d-81eb-125d8b03baa6 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-B6-A0IG-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11D-A032-05 baaa2b31-0e59-4f7d-81eb-125d8b03baa6 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-B6-A0IG-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11D-A032-05 baaa2b31-0e59-4f7d-81eb-125d8b03baa6 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-B6-A0IG-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11D-A033-02 c22454da-916c-4a59-8943-152e89769606 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11D-A036-01 9c3fcdbc-c563-416e-8cd4-b95d15b9bee9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11D-A036-01 9c3fcdbc-c563-416e-8cd4-b95d15b9bee9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11D-A036-01 9c3fcdbc-c563-416e-8cd4-b95d15b9bee9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11D-A036-01 9c3fcdbc-c563-416e-8cd4-b95d15b9bee9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11D-A036-01 9c3fcdbc-c563-416e-8cd4-b95d15b9bee9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11D-A036-01 9c3fcdbc-c563-416e-8cd4-b95d15b9bee9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11D-A036-01 9c3fcdbc-c563-416e-8cd4-b95d15b9bee9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11D-A036-01 9c3fcdbc-c563-416e-8cd4-b95d15b9bee9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C06_667230.seg.data.txt'. TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11D-A044-08 f00fc023-034e-4248-b3af-b50440c219ac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11D-A045-09 6ce0c60d-15e3-4176-9006-2b1f4a72a038 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11R-A034-07 463d3f12-16bb-456a-8fb1-f200c7996406 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11R-A034-07 463d3f12-16bb-456a-8fb1-f200c7996406 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012121_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11R-A034-07 463d3f12-16bb-456a-8fb1-f200c7996406 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012121_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11R-A034-07 463d3f12-16bb-456a-8fb1-f200c7996406 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012121_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11R-A034-07 463d3f12-16bb-456a-8fb1-f200c7996406 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_474041.TCGA-B6-A0IG-01A-11R-A034-07.110412_UNC13-SN749_0053_BB018EABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11R-A034-07 463d3f12-16bb-456a-8fb1-f200c7996406 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_474164.TCGA-B6-A0IG-01A-11R-A034-07.110412_UNC13-SN749_0053_BB018EABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11R-A034-07 463d3f12-16bb-456a-8fb1-f200c7996406 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_474169.TCGA-B6-A0IG-01A-11R-A034-07.110412_UNC13-SN749_0053_BB018EABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11R-A035-13 10bbe187-b124-41e0-881b-cca18cb44a6d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11R-A035-13 10bbe187-b124-41e0-881b-cca18cb44a6d miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0IG-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11R-A035-13 10bbe187-b124-41e0-881b-cca18cb44a6d miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0IG-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11W-A050-09 e8046519-d928-4fd3-b3e2-84585aa4f022 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11W-A050-09 e8046519-d928-4fd3-b3e2-84585aa4f022 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11W-A050-09 e8046519-d928-4fd3-b3e2-84585aa4f022 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11W-A051-08 7e834cc1-06ad-409b-bf4a-ba4480fa0f53 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11X-A048-08 4998e141-61ae-4774-b217-508e98e3ec6b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-01A TCGA-B6-A0IG-01A-11X-A049-09 b088f709-b030-42a6-896f-f1148343402c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-10A TCGA-B6-A0IG-10A-01D-A031-02 af45278d-fc57-4423-86a4-28b977ff5b81 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-10A TCGA-B6-A0IG-10A-01D-A037-01 5467c505-7c11-40d5-923d-8c250e1ab71f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-10A TCGA-B6-A0IG-10A-01D-A037-01 5467c505-7c11-40d5-923d-8c250e1ab71f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H01_667146.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0IG TCGA-B6-A0IG-10A TCGA-B6-A0IG-10A-01D-A037-01 5467c505-7c11-40d5-923d-8c250e1ab71f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H01_667146.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-10A TCGA-B6-A0IG-10A-01D-A037-01 5467c505-7c11-40d5-923d-8c250e1ab71f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H01_667146.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-10A TCGA-B6-A0IG-10A-01D-A037-01 5467c505-7c11-40d5-923d-8c250e1ab71f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H01_667146.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-10A TCGA-B6-A0IG-10A-01D-A037-01 5467c505-7c11-40d5-923d-8c250e1ab71f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H01_667146.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-10A TCGA-B6-A0IG-10A-01D-A037-01 5467c505-7c11-40d5-923d-8c250e1ab71f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H01_667146.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-10A TCGA-B6-A0IG-10A-01D-A037-01 5467c505-7c11-40d5-923d-8c250e1ab71f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H01_667146.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-10A TCGA-B6-A0IG-10A-01D-A037-01 5467c505-7c11-40d5-923d-8c250e1ab71f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H01_667146.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-10A TCGA-B6-A0IG-10A-01D-A046-08 aa0f11d1-425e-4b06-8253-f387c1eaadf2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-10A TCGA-B6-A0IG-10A-01D-A047-09 989773e2-2496-482a-a40c-09bfa7e277f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-10A TCGA-B6-A0IG-10A-01W-A053-08 cef0f621-ef7a-4ffe-83b1-7bbc154aae88 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-10A TCGA-B6-A0IG-10A-01W-A055-09 aa1686ba-bc50-4b76-9a59-9971c176876e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-10A TCGA-B6-A0IG-10A-01W-A055-09 aa1686ba-bc50-4b76-9a59-9971c176876e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-10A TCGA-B6-A0IG-10A-01W-A055-09 aa1686ba-bc50-4b76-9a59-9971c176876e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-10A TCGA-B6-A0IG-10A-01X-A052-08 0653af6e-8802-4f6a-860f-34aa9320e717 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IG TCGA-B6-A0IG-10A TCGA-B6-A0IG-10A-01X-A054-09 94cf385e-773c-4d40-8e6c-ad9c6410de46 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11D-A10X-02 664b8444-5b63-428b-b9c9-3637a236658c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11D-A10Y-09 4a4488b9-74d9-4eb1-a7ef-c894c32db942 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11D-A10Y-09 4a4488b9-74d9-4eb1-a7ef-c894c32db942 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11D-A111-01 79e2c7cc-5875-41c6-9586-301a4aea7597 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11D-A111-01 79e2c7cc-5875-41c6-9586-301a4aea7597 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G06_735106.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11D-A111-01 79e2c7cc-5875-41c6-9586-301a4aea7597 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G06_735106.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11D-A111-01 79e2c7cc-5875-41c6-9586-301a4aea7597 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G06_735106.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11D-A111-01 79e2c7cc-5875-41c6-9586-301a4aea7597 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G06_735106.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11D-A111-01 79e2c7cc-5875-41c6-9586-301a4aea7597 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G06_735106.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11D-A111-01 79e2c7cc-5875-41c6-9586-301a4aea7597 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G06_735106.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11D-A111-01 79e2c7cc-5875-41c6-9586-301a4aea7597 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G06_735106.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11D-A111-01 79e2c7cc-5875-41c6-9586-301a4aea7597 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G06_735106.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11D-A112-05 4fa91124-18f2-439a-9917-a0f7544f6975 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11D-A112-05 4fa91124-18f2-439a-9917-a0f7544f6975 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-B6-A0IH-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11D-A112-05 4fa91124-18f2-439a-9917-a0f7544f6975 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-B6-A0IH-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11D-A112-05 4fa91124-18f2-439a-9917-a0f7544f6975 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-B6-A0IH-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11R-A114-13 01bd06a9-e3f7-4db9-85c3-e28dd00501c5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11R-A114-13 01bd06a9-e3f7-4db9-85c3-e28dd00501c5 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-B6-A0IH-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11R-A114-13 01bd06a9-e3f7-4db9-85c3-e28dd00501c5 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-B6-A0IH-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11R-A115-07 76fabc98-ad85-4315-8653-4028e24cd2ff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11R-A115-07 76fabc98-ad85-4315-8653-4028e24cd2ff Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012773_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11R-A115-07 76fabc98-ad85-4315-8653-4028e24cd2ff Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012773_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11R-A115-07 76fabc98-ad85-4315-8653-4028e24cd2ff Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012773_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11R-A115-07 76fabc98-ad85-4315-8653-4028e24cd2ff RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441845.TCGA-B6-A0IH-01A-11R-A115-07.110510_UNC15-SN850_0068_AB0BDUABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11R-A115-07 76fabc98-ad85-4315-8653-4028e24cd2ff RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442073.TCGA-B6-A0IH-01A-11R-A115-07.110510_UNC15-SN850_0068_AB0BDUABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11R-A115-07 76fabc98-ad85-4315-8653-4028e24cd2ff RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442309.TCGA-B6-A0IH-01A-11R-A115-07.110510_UNC15-SN850_0068_AB0BDUABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-01A TCGA-B6-A0IH-01A-11W-A12T-09 a0679731-66e2-415d-93e1-75c484137e8c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-10A TCGA-B6-A0IH-10A-01D-A10Z-02 97750a54-39b8-4ea9-b0e4-e8bbc81c2e35 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-10A TCGA-B6-A0IH-10A-01D-A110-09 348ca096-ee86-4a96-9a09-a90b24e84060 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-10A TCGA-B6-A0IH-10A-01D-A110-09 348ca096-ee86-4a96-9a09-a90b24e84060 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-10A TCGA-B6-A0IH-10A-01D-A113-01 65152479-0173-4042-b844-f65bd18950c6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-10A TCGA-B6-A0IH-10A-01D-A113-01 65152479-0173-4042-b844-f65bd18950c6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C07_735174.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-B6-A0IH TCGA-B6-A0IH-10A TCGA-B6-A0IH-10A-01D-A113-01 65152479-0173-4042-b844-f65bd18950c6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C07_735174.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-10A TCGA-B6-A0IH-10A-01D-A113-01 65152479-0173-4042-b844-f65bd18950c6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C07_735174.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-10A TCGA-B6-A0IH-10A-01D-A113-01 65152479-0173-4042-b844-f65bd18950c6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C07_735174.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-10A TCGA-B6-A0IH-10A-01D-A113-01 65152479-0173-4042-b844-f65bd18950c6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C07_735174.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-10A TCGA-B6-A0IH-10A-01D-A113-01 65152479-0173-4042-b844-f65bd18950c6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C07_735174.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-10A TCGA-B6-A0IH-10A-01D-A113-01 65152479-0173-4042-b844-f65bd18950c6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C07_735174.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-10A TCGA-B6-A0IH-10A-01D-A113-01 65152479-0173-4042-b844-f65bd18950c6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C07_735174.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-B6-A0IH TCGA-B6-A0IH-10A TCGA-B6-A0IH-10A-01W-A12U-09 f96fb126-dc59-409c-9165-02cb31d87098 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-01A TCGA-B6-A0IJ-01A-11D-A032-05 727a9daa-e15f-4230-a7bc-a4ae1e5214c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-01A TCGA-B6-A0IJ-01A-11D-A032-05 727a9daa-e15f-4230-a7bc-a4ae1e5214c8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-B6-A0IJ-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-01A TCGA-B6-A0IJ-01A-11D-A032-05 727a9daa-e15f-4230-a7bc-a4ae1e5214c8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-B6-A0IJ-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-01A TCGA-B6-A0IJ-01A-11D-A032-05 727a9daa-e15f-4230-a7bc-a4ae1e5214c8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-B6-A0IJ-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-01A TCGA-B6-A0IJ-01A-11D-A033-02 28482b50-c329-42f6-b1be-21507a74497e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-01A TCGA-B6-A0IJ-01A-11D-A036-01 6c71c171-be2a-4eac-bae9-841c1192ab61 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-01A TCGA-B6-A0IJ-01A-11D-A036-01 6c71c171-be2a-4eac-bae9-841c1192ab61 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C02_667124.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0IJ TCGA-B6-A0IJ-01A TCGA-B6-A0IJ-01A-11D-A036-01 6c71c171-be2a-4eac-bae9-841c1192ab61 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C02_667124.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-01A TCGA-B6-A0IJ-01A-11D-A036-01 6c71c171-be2a-4eac-bae9-841c1192ab61 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C02_667124.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-01A TCGA-B6-A0IJ-01A-11D-A036-01 6c71c171-be2a-4eac-bae9-841c1192ab61 SNP Genome_Wide_SNP_6 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TCGA-B6-A0IJ-01A-11R-A034-07 f77e9ef0-0a62-426b-98d9-6813edeb63a5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012122_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-B6-A0IJ TCGA-B6-A0IJ-01A TCGA-B6-A0IJ-01A-11R-A034-07 f77e9ef0-0a62-426b-98d9-6813edeb63a5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_475134.TCGA-B6-A0IJ-01A-11R-A034-07.110412_UNC13-SN749_0053_BB018EABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-01A TCGA-B6-A0IJ-01A-11R-A034-07 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30f94a02-de42-4a54-9987-a801dc9350f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-01A TCGA-B6-A0IJ-01A-11R-A035-13 30f94a02-de42-4a54-9987-a801dc9350f4 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0IJ-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-01A TCGA-B6-A0IJ-01A-11R-A035-13 30f94a02-de42-4a54-9987-a801dc9350f4 miRNASeq IlluminaGA_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-01A TCGA-B6-A0IJ-01A-11W-A050-09 c63f9ddb-6301-400e-a0e8-197eea2efe75 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-01A TCGA-B6-A0IJ-01A-11W-A051-08 206e3890-a807-48af-ac73-a688b348aba9 Complete Clinical Set bio 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Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B12_667076.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0IJ TCGA-B6-A0IJ-10A TCGA-B6-A0IJ-10A-01D-A037-01 c0325c83-4edc-401f-9f71-2bff3c9df2d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B12_667076.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-10A TCGA-B6-A0IJ-10A-01D-A037-01 c0325c83-4edc-401f-9f71-2bff3c9df2d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B12_667076.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-10A TCGA-B6-A0IJ-10A-01D-A037-01 c0325c83-4edc-401f-9f71-2bff3c9df2d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B12_667076.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-10A TCGA-B6-A0IJ-10A-01D-A037-01 c0325c83-4edc-401f-9f71-2bff3c9df2d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B12_667076.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-10A TCGA-B6-A0IJ-10A-01D-A037-01 c0325c83-4edc-401f-9f71-2bff3c9df2d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B12_667076.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-10A TCGA-B6-A0IJ-10A-01D-A037-01 c0325c83-4edc-401f-9f71-2bff3c9df2d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B12_667076.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-10A TCGA-B6-A0IJ-10A-01D-A037-01 c0325c83-4edc-401f-9f71-2bff3c9df2d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B12_667076.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-10A TCGA-B6-A0IJ-10A-01D-A046-08 fe984acb-e1fd-4406-a856-90557bde43c3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-10A TCGA-B6-A0IJ-10A-01D-A047-09 fd005e29-f513-4b5e-94e7-9c7b7e8537e9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-10A TCGA-B6-A0IJ-10A-01D-A128-09 53cb363b-46b5-49fa-8868-82d5957da566 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-10A TCGA-B6-A0IJ-10A-01W-A053-08 4138f53b-983d-4081-962c-af287d9ae296 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-10A TCGA-B6-A0IJ-10A-01W-A055-09 aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-10A TCGA-B6-A0IJ-10A-01W-A055-09 aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-10A TCGA-B6-A0IJ-10A-01W-A055-09 aa5b770f-1e5f-459b-8ef5-cfbbb5ecd737 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-10A TCGA-B6-A0IJ-10A-01X-A052-08 ff6fefc4-b48a-4313-9492-099390cbc01e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IJ TCGA-B6-A0IJ-10A TCGA-B6-A0IJ-10A-01X-A054-09 6ff1e58e-7af1-4c29-b55a-b2e17e0b7974 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-01A TCGA-B6-A0IK-01A-12D-A058-05 e3e8c61b-5cbb-4fda-8fc5-59780cfe70c0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-01A TCGA-B6-A0IK-01A-12D-A059-01 e0a41bf9-0af4-4a94-9b08-724a938ae4ae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-01A TCGA-B6-A0IK-01A-12D-A059-01 e0a41bf9-0af4-4a94-9b08-724a938ae4ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C09_697084.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-B6-A0IK TCGA-B6-A0IK-01A TCGA-B6-A0IK-01A-12D-A059-01 e0a41bf9-0af4-4a94-9b08-724a938ae4ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C09_697084.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-01A TCGA-B6-A0IK-01A-12D-A059-01 e0a41bf9-0af4-4a94-9b08-724a938ae4ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C09_697084.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-01A TCGA-B6-A0IK-01A-12D-A059-01 e0a41bf9-0af4-4a94-9b08-724a938ae4ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C09_697084.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-01A TCGA-B6-A0IK-01A-12D-A059-01 e0a41bf9-0af4-4a94-9b08-724a938ae4ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C09_697084.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-01A TCGA-B6-A0IK-01A-12D-A059-01 e0a41bf9-0af4-4a94-9b08-724a938ae4ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C09_697084.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-01A TCGA-B6-A0IK-01A-12D-A059-01 e0a41bf9-0af4-4a94-9b08-724a938ae4ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C09_697084.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-01A TCGA-B6-A0IK-01A-12D-A059-01 e0a41bf9-0af4-4a94-9b08-724a938ae4ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C09_697084.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-01A TCGA-B6-A0IK-01A-12D-A060-02 6e516f56-1e7c-4c41-bdbe-7f4985e9e4e7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-01A TCGA-B6-A0IK-01A-12D-A074-08 3840663b-8560-4d50-b0b7-5de7ee62db79 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-01A TCGA-B6-A0IK-01A-12D-A075-09 2caa674c-5b2b-467e-a338-9afc452691d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-01A TCGA-B6-A0IK-01A-12D-A10P-05 48ee53f5-d093-4d5f-aaf6-f2fcbb391c8f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-01A TCGA-B6-A0IK-01A-12D-A10P-05 48ee53f5-d093-4d5f-aaf6-f2fcbb391c8f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486014_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-01A TCGA-B6-A0IK-01A-12D-A10P-05 48ee53f5-d093-4d5f-aaf6-f2fcbb391c8f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486014_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-01A TCGA-B6-A0IK-01A-12D-A10P-05 48ee53f5-d093-4d5f-aaf6-f2fcbb391c8f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-B6-A0IK-01A-12D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-01A TCGA-B6-A0IK-01A-12D-A10P-05 48ee53f5-d093-4d5f-aaf6-f2fcbb391c8f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-B6-A0IK-01A-12D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-01A TCGA-B6-A0IK-01A-12R-A056-07 8fb338fe-ffa8-45c2-857b-f713d1935330 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-01A TCGA-B6-A0IK-01A-12R-A056-07 8fb338fe-ffa8-45c2-857b-f713d1935330 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012203_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-01A TCGA-B6-A0IK-01A-12R-A056-07 8fb338fe-ffa8-45c2-857b-f713d1935330 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012203_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-01A TCGA-B6-A0IK-01A-12R-A056-07 8fb338fe-ffa8-45c2-857b-f713d1935330 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012203_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-01A TCGA-B6-A0IK-01A-12R-A056-07 8fb338fe-ffa8-45c2-857b-f713d1935330 RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-01A TCGA-B6-A0IK-01A-12W-A071-09 c5b1f426-562e-44e4-bcce-ce2ff6d969c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-01A TCGA-B6-A0IK-01A-12W-A071-09 c5b1f426-562e-44e4-bcce-ce2ff6d969c8 Somatic Mutations IlluminaGA_DNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-10A TCGA-B6-A0IK-10A-01D-A059-01 76923226-7874-406b-8713-5f13b7d34ee2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-10A TCGA-B6-A0IK-10A-01D-A059-01 76923226-7874-406b-8713-5f13b7d34ee2 SNP Genome_Wide_SNP_6 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1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-10A TCGA-B6-A0IK-10A-01W-A070-08 b94e391c-cbdf-4065-b726-88964111fbbe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-10A TCGA-B6-A0IK-10A-01W-A071-09 79f55c96-edea-4b81-a4de-5df5e55df162 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-10A TCGA-B6-A0IK-10A-01W-A071-09 79f55c96-edea-4b81-a4de-5df5e55df162 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-10A TCGA-B6-A0IK-10A-01X-A072-08 34858e05-d879-46a5-aede-8c005c8b8849 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0IK TCGA-B6-A0IK-10A TCGA-B6-A0IK-10A-01X-A073-09 8016fd38-70ab-45ac-8bf5-71c2d1432b0d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11D-A032-05 98948707-485d-42b9-a96d-cce4f0f3295b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11D-A032-05 98948707-485d-42b9-a96d-cce4f0f3295b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-B6-A0IM-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11D-A032-05 98948707-485d-42b9-a96d-cce4f0f3295b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-B6-A0IM-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11D-A032-05 98948707-485d-42b9-a96d-cce4f0f3295b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-B6-A0IM-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11D-A033-02 b277d626-0c63-4f5b-8a02-5943e95d1200 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11D-A036-01 a12ef456-3010-4ec9-a428-0259be208606 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11D-A036-01 a12ef456-3010-4ec9-a428-0259be208606 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B05_667234.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11D-A036-01 a12ef456-3010-4ec9-a428-0259be208606 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B05_667234.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11D-A036-01 a12ef456-3010-4ec9-a428-0259be208606 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B05_667234.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11D-A036-01 a12ef456-3010-4ec9-a428-0259be208606 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B05_667234.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11D-A036-01 a12ef456-3010-4ec9-a428-0259be208606 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B05_667234.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11D-A036-01 a12ef456-3010-4ec9-a428-0259be208606 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B05_667234.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11D-A036-01 a12ef456-3010-4ec9-a428-0259be208606 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B05_667234.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11D-A036-01 a12ef456-3010-4ec9-a428-0259be208606 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B05_667234.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11D-A044-08 50c8b522-de88-464f-a5e7-f6833c44fffa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11D-A045-09 a30d0e56-c671-4df5-9742-311bfdaeffcc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11R-A034-07 53f4d557-cad7-4367-9546-c10752cc6189 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11R-A034-07 53f4d557-cad7-4367-9546-c10752cc6189 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012301_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11R-A034-07 53f4d557-cad7-4367-9546-c10752cc6189 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012301_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11R-A034-07 53f4d557-cad7-4367-9546-c10752cc6189 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012301_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11R-A034-07 53f4d557-cad7-4367-9546-c10752cc6189 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_469490.TCGA-B6-A0IM-01A-11R-A034-07.110503_UNC12-SN629_0080_BC011MABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11R-A034-07 53f4d557-cad7-4367-9546-c10752cc6189 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_469514.TCGA-B6-A0IM-01A-11R-A034-07.110503_UNC12-SN629_0080_BC011MABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11R-A034-07 53f4d557-cad7-4367-9546-c10752cc6189 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_469602.TCGA-B6-A0IM-01A-11R-A034-07.110503_UNC12-SN629_0080_BC011MABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11R-A035-13 57c67a6b-b628-4747-97dd-8827c7e72eb0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11R-A035-13 57c67a6b-b628-4747-97dd-8827c7e72eb0 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0IM-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11R-A035-13 57c67a6b-b628-4747-97dd-8827c7e72eb0 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0IM-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11W-A050-09 e99a4753-10db-4823-953d-e878a90e6b01 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11W-A050-09 e99a4753-10db-4823-953d-e878a90e6b01 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11W-A050-09 e99a4753-10db-4823-953d-e878a90e6b01 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11W-A051-08 743f19d6-c2a1-4ade-a0f4-b740004ee8cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11X-A048-08 36f5c0ea-e95b-4311-90ef-df306fec51eb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-01A TCGA-B6-A0IM-01A-11X-A049-09 59127d31-f893-4e55-a07e-28a7729d3572 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-10A TCGA-B6-A0IM-10A-01D-A031-02 d8dd69ec-aa42-4990-8dab-0abc666f898e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-10A TCGA-B6-A0IM-10A-01D-A037-01 c08c6f8a-6299-4caa-83ab-312597ebecbb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-10A TCGA-B6-A0IM-10A-01D-A037-01 c08c6f8a-6299-4caa-83ab-312597ebecbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B10_667080.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0IM TCGA-B6-A0IM-10A TCGA-B6-A0IM-10A-01D-A037-01 c08c6f8a-6299-4caa-83ab-312597ebecbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B10_667080.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-10A TCGA-B6-A0IM-10A-01D-A037-01 c08c6f8a-6299-4caa-83ab-312597ebecbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B10_667080.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-10A TCGA-B6-A0IM-10A-01D-A037-01 c08c6f8a-6299-4caa-83ab-312597ebecbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B10_667080.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-10A TCGA-B6-A0IM-10A-01D-A037-01 c08c6f8a-6299-4caa-83ab-312597ebecbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B10_667080.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-10A TCGA-B6-A0IM-10A-01D-A037-01 c08c6f8a-6299-4caa-83ab-312597ebecbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B10_667080.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-10A TCGA-B6-A0IM-10A-01D-A037-01 c08c6f8a-6299-4caa-83ab-312597ebecbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B10_667080.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-10A TCGA-B6-A0IM-10A-01D-A037-01 c08c6f8a-6299-4caa-83ab-312597ebecbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B10_667080.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-10A TCGA-B6-A0IM-10A-01D-A046-08 282e03d3-b56b-48af-93e6-ac7529c89cfd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-10A TCGA-B6-A0IM-10A-01D-A047-09 1ae16156-25b0-40a9-9aa5-271b118b523c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-10A TCGA-B6-A0IM-10A-01W-A053-08 1bc97212-2843-4b30-8eea-9ec862265fee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-10A TCGA-B6-A0IM-10A-01W-A055-09 c473b5c1-e471-4517-bdaf-6491c768f5c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-10A TCGA-B6-A0IM-10A-01W-A055-09 c473b5c1-e471-4517-bdaf-6491c768f5c4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-10A TCGA-B6-A0IM-10A-01W-A055-09 c473b5c1-e471-4517-bdaf-6491c768f5c4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-10A TCGA-B6-A0IM-10A-01X-A052-08 05c13084-189a-4488-ab36-4f3f760fd0fc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IM TCGA-B6-A0IM-10A TCGA-B6-A0IM-10A-01X-A054-09 660677ad-dbc7-4613-b1ec-40f208d660c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-01A TCGA-B6-A0IN-01A-11D-A032-05 09371c7b-ea16-4fa8-b8f2-6e38546c9d3d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-01A TCGA-B6-A0IN-01A-11D-A032-05 09371c7b-ea16-4fa8-b8f2-6e38546c9d3d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-B6-A0IN-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-01A TCGA-B6-A0IN-01A-11D-A032-05 09371c7b-ea16-4fa8-b8f2-6e38546c9d3d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-B6-A0IN-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-01A TCGA-B6-A0IN-01A-11D-A032-05 09371c7b-ea16-4fa8-b8f2-6e38546c9d3d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-B6-A0IN-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-01A TCGA-B6-A0IN-01A-11D-A033-02 b1c4221f-ee63-48f1-8810-931a6f65892c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-01A TCGA-B6-A0IN-01A-11D-A036-01 83dfa7a2-901f-40ed-ab73-fa8f0a938566 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-01A TCGA-B6-A0IN-01A-11D-A036-01 83dfa7a2-901f-40ed-ab73-fa8f0a938566 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A01_667214.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0IN TCGA-B6-A0IN-01A TCGA-B6-A0IN-01A-11D-A036-01 83dfa7a2-901f-40ed-ab73-fa8f0a938566 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A01_667214.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-01A TCGA-B6-A0IN-01A-11D-A036-01 83dfa7a2-901f-40ed-ab73-fa8f0a938566 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A01_667214.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-01A TCGA-B6-A0IN-01A-11D-A036-01 83dfa7a2-901f-40ed-ab73-fa8f0a938566 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A01_667214.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-01A TCGA-B6-A0IN-01A-11D-A036-01 83dfa7a2-901f-40ed-ab73-fa8f0a938566 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A01_667214.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-01A TCGA-B6-A0IN-01A-11D-A036-01 83dfa7a2-901f-40ed-ab73-fa8f0a938566 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A01_667214.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-01A TCGA-B6-A0IN-01A-11D-A036-01 83dfa7a2-901f-40ed-ab73-fa8f0a938566 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A01_667214.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-01A TCGA-B6-A0IN-01A-11D-A036-01 83dfa7a2-901f-40ed-ab73-fa8f0a938566 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A01_667214.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-01A TCGA-B6-A0IN-01A-11D-A044-08 a3d241ac-d0c6-49bc-a99f-18b4998158ae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-01A TCGA-B6-A0IN-01A-11D-A045-09 e083a323-78ed-4821-840b-5c081947dfa1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-01A TCGA-B6-A0IN-01A-11R-A034-07 4eaae575-d631-4e2e-8e70-4b4e0a429d74 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-01A TCGA-B6-A0IN-01A-11R-A034-07 4eaae575-d631-4e2e-8e70-4b4e0a429d74 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012303_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-B6-A0IN TCGA-B6-A0IN-01A TCGA-B6-A0IN-01A-11R-A034-07 4eaae575-d631-4e2e-8e70-4b4e0a429d74 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012303_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-B6-A0IN TCGA-B6-A0IN-01A TCGA-B6-A0IN-01A-11R-A034-07 4eaae575-d631-4e2e-8e70-4b4e0a429d74 Expression-Genes AgilentG4502A_07_3 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0IN-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-01A TCGA-B6-A0IN-01A-11W-A050-09 ee2c9198-cea3-4a54-b96b-834a70c30d2f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-01A TCGA-B6-A0IN-01A-11W-A050-09 ee2c9198-cea3-4a54-b96b-834a70c30d2f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-01A TCGA-B6-A0IN-01A-11W-A050-09 ee2c9198-cea3-4a54-b96b-834a70c30d2f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-01A TCGA-B6-A0IN-01A-11W-A051-08 48978215-3da0-441e-9a81-bae07a12ac30 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-01A TCGA-B6-A0IN-01A-11X-A048-08 701596ce-182c-4f49-995b-f9a57dd90c9d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-01A TCGA-B6-A0IN-01A-11X-A049-09 1effd757-944d-4817-80b9-43369d4ab79a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-10A TCGA-B6-A0IN-10A-01D-A031-02 184ff02c-2ddf-4056-b16f-8b1a3bb7189f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-10A TCGA-B6-A0IN-10A-01D-A037-01 ea36cb95-a8c9-403b-99fa-40cc5bd612cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-10A TCGA-B6-A0IN-10A-01D-A037-01 ea36cb95-a8c9-403b-99fa-40cc5bd612cf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A09_667164.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0IN TCGA-B6-A0IN-10A TCGA-B6-A0IN-10A-01D-A037-01 ea36cb95-a8c9-403b-99fa-40cc5bd612cf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A09_667164.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-10A TCGA-B6-A0IN-10A-01D-A037-01 ea36cb95-a8c9-403b-99fa-40cc5bd612cf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A09_667164.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-10A TCGA-B6-A0IN-10A-01D-A037-01 ea36cb95-a8c9-403b-99fa-40cc5bd612cf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A09_667164.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-10A TCGA-B6-A0IN-10A-01D-A037-01 ea36cb95-a8c9-403b-99fa-40cc5bd612cf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A09_667164.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-10A TCGA-B6-A0IN-10A-01D-A037-01 ea36cb95-a8c9-403b-99fa-40cc5bd612cf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A09_667164.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-10A TCGA-B6-A0IN-10A-01D-A037-01 ea36cb95-a8c9-403b-99fa-40cc5bd612cf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A09_667164.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-10A TCGA-B6-A0IN-10A-01D-A037-01 ea36cb95-a8c9-403b-99fa-40cc5bd612cf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A09_667164.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-10A TCGA-B6-A0IN-10A-01D-A046-08 e2501b4c-b8e1-4c8d-b165-806b9a74a905 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-10A TCGA-B6-A0IN-10A-01D-A047-09 ea2b523e-df56-4f54-949a-57608fb95bb5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-10A TCGA-B6-A0IN-10A-01W-A053-08 70b22f24-a725-44a4-8fa8-e7163fb7eba4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-10A TCGA-B6-A0IN-10A-01W-A055-09 a4819d1f-61d6-4804-89de-3a3867e8fbbc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-10A TCGA-B6-A0IN-10A-01W-A055-09 a4819d1f-61d6-4804-89de-3a3867e8fbbc Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-10A TCGA-B6-A0IN-10A-01W-A055-09 a4819d1f-61d6-4804-89de-3a3867e8fbbc Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-10A TCGA-B6-A0IN-10A-01X-A052-08 799b4445-b20d-47d5-a64d-f4ab5b5a3d12 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IN TCGA-B6-A0IN-10A TCGA-B6-A0IN-10A-01X-A054-09 a75f6801-0ed2-48e9-9ae0-a184ead1a9b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11D-A032-05 81ec9529-067b-41d4-9e1a-3edb17fcfa1d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11D-A032-05 81ec9529-067b-41d4-9e1a-3edb17fcfa1d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-B6-A0IO-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11D-A032-05 81ec9529-067b-41d4-9e1a-3edb17fcfa1d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-B6-A0IO-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11D-A032-05 81ec9529-067b-41d4-9e1a-3edb17fcfa1d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-B6-A0IO-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11D-A033-02 884e6ead-2927-4e81-b7b1-0a1ec1b1690d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11D-A036-01 e9f6dacc-c812-45f5-8ec1-d70866537325 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11D-A036-01 e9f6dacc-c812-45f5-8ec1-d70866537325 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D12_667140.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11D-A036-01 e9f6dacc-c812-45f5-8ec1-d70866537325 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D12_667140.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11D-A036-01 e9f6dacc-c812-45f5-8ec1-d70866537325 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D12_667140.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11D-A036-01 e9f6dacc-c812-45f5-8ec1-d70866537325 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D12_667140.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11D-A036-01 e9f6dacc-c812-45f5-8ec1-d70866537325 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D12_667140.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11D-A036-01 e9f6dacc-c812-45f5-8ec1-d70866537325 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D12_667140.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11D-A036-01 e9f6dacc-c812-45f5-8ec1-d70866537325 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D12_667140.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11D-A036-01 e9f6dacc-c812-45f5-8ec1-d70866537325 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D12_667140.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11D-A044-08 5481dfd6-5330-4d2f-94f9-d924c1f37a88 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11D-A045-09 147660bd-cfab-48f4-8630-c6a038272694 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11R-A034-07 e7a1527b-dbaf-48ae-a322-e54efd36985d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11R-A034-07 e7a1527b-dbaf-48ae-a322-e54efd36985d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012302_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11R-A034-07 e7a1527b-dbaf-48ae-a322-e54efd36985d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012302_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11R-A034-07 e7a1527b-dbaf-48ae-a322-e54efd36985d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012302_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11R-A034-07 e7a1527b-dbaf-48ae-a322-e54efd36985d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_469416.TCGA-B6-A0IO-01A-11R-A034-07.110503_UNC12-SN629_0080_BC011MABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11R-A034-07 e7a1527b-dbaf-48ae-a322-e54efd36985d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_469515.TCGA-B6-A0IO-01A-11R-A034-07.110503_UNC12-SN629_0080_BC011MABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11R-A034-07 e7a1527b-dbaf-48ae-a322-e54efd36985d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_469540.TCGA-B6-A0IO-01A-11R-A034-07.110503_UNC12-SN629_0080_BC011MABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11R-A035-13 fab2ca70-786d-467a-bf01-758df1809c78 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11R-A035-13 fab2ca70-786d-467a-bf01-758df1809c78 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0IO-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11R-A035-13 fab2ca70-786d-467a-bf01-758df1809c78 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0IO-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11W-A050-09 648cee86-f2e7-45a0-abf2-0ab0037e2eee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11W-A050-09 648cee86-f2e7-45a0-abf2-0ab0037e2eee Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11W-A050-09 648cee86-f2e7-45a0-abf2-0ab0037e2eee Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-01A TCGA-B6-A0IO-01A-11W-A051-08 8a0f5927-d426-449b-b1cd-c4b48469c7d1 Complete Clinical Set bio 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1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-10A TCGA-B6-A0IO-10A-01D-A031-02 7102047f-a69d-4236-a41c-e4a574f53b7e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-10A TCGA-B6-A0IO-10A-01D-A037-01 8630bc05-d028-470f-a089-aab073e399b6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-10A TCGA-B6-A0IO-10A-01D-A037-01 8630bc05-d028-470f-a089-aab073e399b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G12_667168.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0IO TCGA-B6-A0IO-10A TCGA-B6-A0IO-10A-01D-A037-01 8630bc05-d028-470f-a089-aab073e399b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G12_667168.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-10A TCGA-B6-A0IO-10A-01D-A037-01 8630bc05-d028-470f-a089-aab073e399b6 SNP Genome_Wide_SNP_6 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1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-10A TCGA-B6-A0IO-10A-01W-A055-09 ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-10A TCGA-B6-A0IO-10A-01W-A055-09 ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-10A TCGA-B6-A0IO-10A-01W-A055-09 ffcf5f3e-608f-4d7d-ac3a-b79a45325ff4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-10A TCGA-B6-A0IO-10A-01X-A052-08 166978f2-f489-4b11-8416-0d1b7f64f96f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IO TCGA-B6-A0IO-10A TCGA-B6-A0IO-10A-01X-A054-09 d1993d54-599e-4970-8378-e4aadd3bb58e Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H05_667072.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-01A TCGA-B6-A0IP-01A-11D-A036-01 12dff233-d164-4560-8045-1712fd973416 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H05_667072.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-01A TCGA-B6-A0IP-01A-11D-A036-01 12dff233-d164-4560-8045-1712fd973416 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_H05_667072.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-01A TCGA-B6-A0IP-01A-11D-A044-08 3e53b5f6-2a66-4072-ae79-6500095bcc57 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-01A TCGA-B6-A0IP-01A-11D-A045-09 94250f1c-d514-4dd2-b488-a93fbf111784 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-01A TCGA-B6-A0IP-01A-11D-A045-09 94250f1c-d514-4dd2-b488-a93fbf111784 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-01A TCGA-B6-A0IP-01A-11R-A034-07 9384eb09-5787-49e8-b07e-bd9f71997771 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-01A TCGA-B6-A0IP-01A-11R-A034-07 9384eb09-5787-49e8-b07e-bd9f71997771 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012401_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-B6-A0IP TCGA-B6-A0IP-01A TCGA-B6-A0IP-01A-11R-A034-07 9384eb09-5787-49e8-b07e-bd9f71997771 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012401_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-B6-A0IP TCGA-B6-A0IP-01A TCGA-B6-A0IP-01A-11R-A034-07 9384eb09-5787-49e8-b07e-bd9f71997771 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012401_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-B6-A0IP TCGA-B6-A0IP-01A TCGA-B6-A0IP-01A-11R-A034-07 9384eb09-5787-49e8-b07e-bd9f71997771 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_469455.TCGA-B6-A0IP-01A-11R-A034-07.110503_UNC12-SN629_0080_BC011MABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-01A TCGA-B6-A0IP-01A-11R-A034-07 9384eb09-5787-49e8-b07e-bd9f71997771 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_469519.TCGA-B6-A0IP-01A-11R-A034-07.110503_UNC12-SN629_0080_BC011MABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-01A TCGA-B6-A0IP-01A-11R-A034-07 9384eb09-5787-49e8-b07e-bd9f71997771 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_469554.TCGA-B6-A0IP-01A-11R-A034-07.110503_UNC12-SN629_0080_BC011MABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-01A TCGA-B6-A0IP-01A-11R-A035-13 a111c2b8-2314-4892-b876-c773e5f6f6b3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-01A TCGA-B6-A0IP-01A-11R-A035-13 a111c2b8-2314-4892-b876-c773e5f6f6b3 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0IP-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-01A TCGA-B6-A0IP-01A-11R-A035-13 a111c2b8-2314-4892-b876-c773e5f6f6b3 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0IP-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-01A TCGA-B6-A0IP-01A-11W-A050-09 371c4d3c-436a-4322-90ae-05acd96dc41b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-01A TCGA-B6-A0IP-01A-11W-A051-08 08234c14-a4bb-4919-bb9b-c079ec14e535 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-01A TCGA-B6-A0IP-01A-11X-A048-08 a7d4036f-8b20-4531-966a-a8121ee0377d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-01A TCGA-B6-A0IP-01A-11X-A049-09 7c602237-939b-413c-bbe7-79c2af3c2f7b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-10A TCGA-B6-A0IP-10A-01D-A031-02 a83d7ce6-15f2-4524-b229-7b334680520d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-10A TCGA-B6-A0IP-10A-01D-A037-01 3afca159-4db9-486f-884f-ab86f614832e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-10A TCGA-B6-A0IP-10A-01D-A037-01 3afca159-4db9-486f-884f-ab86f614832e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E09_667064.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0IP TCGA-B6-A0IP-10A TCGA-B6-A0IP-10A-01D-A037-01 3afca159-4db9-486f-884f-ab86f614832e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E09_667064.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-10A TCGA-B6-A0IP-10A-01D-A037-01 3afca159-4db9-486f-884f-ab86f614832e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E09_667064.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-10A TCGA-B6-A0IP-10A-01D-A037-01 3afca159-4db9-486f-884f-ab86f614832e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E09_667064.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-10A TCGA-B6-A0IP-10A-01D-A037-01 3afca159-4db9-486f-884f-ab86f614832e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E09_667064.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-10A TCGA-B6-A0IP-10A-01D-A037-01 3afca159-4db9-486f-884f-ab86f614832e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E09_667064.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-10A TCGA-B6-A0IP-10A-01D-A037-01 3afca159-4db9-486f-884f-ab86f614832e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E09_667064.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-10A TCGA-B6-A0IP-10A-01D-A037-01 3afca159-4db9-486f-884f-ab86f614832e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E09_667064.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-10A TCGA-B6-A0IP-10A-01D-A046-08 5f6654f3-cca5-45c4-8426-d10f4a45fad4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-10A TCGA-B6-A0IP-10A-01D-A047-09 b51ccb87-2f2c-42da-ae86-13a163390045 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-10A TCGA-B6-A0IP-10A-01W-A053-08 de7798c0-be42-4202-9b3b-d30a5a1a2791 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-10A TCGA-B6-A0IP-10A-01W-A055-09 bddb8485-8070-44ea-b360-acd8934b5a5d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-10A TCGA-B6-A0IP-10A-01W-A055-09 bddb8485-8070-44ea-b360-acd8934b5a5d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-10A TCGA-B6-A0IP-10A-01X-A052-08 28e0f310-37bc-4efa-a257-5f0c497eeaef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IP TCGA-B6-A0IP-10A TCGA-B6-A0IP-10A-01X-A054-09 803d8f4b-a98d-49c1-96cc-84752b61dac2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11D-A032-05 e1a3e5e0-1568-41a8-a518-587ccd85d17c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11D-A032-05 e1a3e5e0-1568-41a8-a518-587ccd85d17c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-B6-A0IQ-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11D-A032-05 e1a3e5e0-1568-41a8-a518-587ccd85d17c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-B6-A0IQ-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11D-A032-05 e1a3e5e0-1568-41a8-a518-587ccd85d17c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-B6-A0IQ-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11D-A033-02 56fde9b1-2778-44dc-98d6-bbdbc7245bf7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11D-A036-01 758e3752-e267-4bb3-be83-a88b6eb7e9fc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11D-A036-01 758e3752-e267-4bb3-be83-a88b6eb7e9fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A12_667174.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11D-A036-01 758e3752-e267-4bb3-be83-a88b6eb7e9fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A12_667174.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11D-A036-01 758e3752-e267-4bb3-be83-a88b6eb7e9fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A12_667174.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11D-A036-01 758e3752-e267-4bb3-be83-a88b6eb7e9fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A12_667174.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11D-A036-01 758e3752-e267-4bb3-be83-a88b6eb7e9fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A12_667174.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11D-A036-01 758e3752-e267-4bb3-be83-a88b6eb7e9fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A12_667174.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11D-A036-01 758e3752-e267-4bb3-be83-a88b6eb7e9fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A12_667174.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11D-A036-01 758e3752-e267-4bb3-be83-a88b6eb7e9fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A12_667174.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11D-A044-08 531ccfb8-38a7-4964-94fc-76b6c5360ba1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11D-A045-09 e723b10b-97ee-4db8-b084-e07da72e0356 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11D-A128-09 8956d73d-7e36-4129-8a3e-d4f3b43baf0b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11R-A034-07 2e9c893c-1d72-49a7-8755-1ede20b26fcf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11R-A034-07 2e9c893c-1d72-49a7-8755-1ede20b26fcf Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012402_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11R-A034-07 2e9c893c-1d72-49a7-8755-1ede20b26fcf Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012402_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11R-A034-07 2e9c893c-1d72-49a7-8755-1ede20b26fcf Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012402_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11R-A034-07 2e9c893c-1d72-49a7-8755-1ede20b26fcf RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_469444.TCGA-B6-A0IQ-01A-11R-A034-07.110503_UNC12-SN629_0080_BC011MABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11R-A034-07 2e9c893c-1d72-49a7-8755-1ede20b26fcf RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_469549.TCGA-B6-A0IQ-01A-11R-A034-07.110503_UNC12-SN629_0080_BC011MABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11R-A034-07 2e9c893c-1d72-49a7-8755-1ede20b26fcf RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_469601.TCGA-B6-A0IQ-01A-11R-A034-07.110503_UNC12-SN629_0080_BC011MABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11R-A035-13 0e58bb05-fb3d-4483-9f4d-10b039134442 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11R-A035-13 0e58bb05-fb3d-4483-9f4d-10b039134442 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0IQ-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11R-A035-13 0e58bb05-fb3d-4483-9f4d-10b039134442 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0IQ-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11W-A050-09 583964cf-84ad-4ef1-90d1-2f6bfbeb245a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11W-A050-09 583964cf-84ad-4ef1-90d1-2f6bfbeb245a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11W-A050-09 583964cf-84ad-4ef1-90d1-2f6bfbeb245a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11W-A051-08 3e62c1d1-cdb2-498d-a263-9b1ebaab8ebb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11X-A048-08 dce2e48d-2780-496a-b155-a0b818fe2121 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-01A TCGA-B6-A0IQ-01A-11X-A049-09 03943733-c06d-45e5-a763-9d6a43b80290 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-10A TCGA-B6-A0IQ-10A-01D-A031-02 240038f0-dde2-4b79-915d-e9439d027c97 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-10A TCGA-B6-A0IQ-10A-01D-A037-01 082b03f6-3a39-4dd8-a4cd-ade7df78dba4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-10A TCGA-B6-A0IQ-10A-01D-A037-01 082b03f6-3a39-4dd8-a4cd-ade7df78dba4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E02_667176.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-B6-A0IQ TCGA-B6-A0IQ-10A TCGA-B6-A0IQ-10A-01D-A037-01 082b03f6-3a39-4dd8-a4cd-ade7df78dba4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E02_667176.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-10A TCGA-B6-A0IQ-10A-01D-A037-01 082b03f6-3a39-4dd8-a4cd-ade7df78dba4 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E02_667176.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-10A TCGA-B6-A0IQ-10A-01D-A037-01 082b03f6-3a39-4dd8-a4cd-ade7df78dba4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E02_667176.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-10A TCGA-B6-A0IQ-10A-01D-A046-08 add98c11-a7c0-48a2-8aff-924d6082f246 Complete Clinical Set bio 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1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-10A TCGA-B6-A0IQ-10A-01W-A053-08 1f247073-fb9b-4396-839c-b67ac2325c36 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-10A TCGA-B6-A0IQ-10A-01W-A055-09 3f199ef5-ce92-487f-bf42-e16e986dc62c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-10A TCGA-B6-A0IQ-10A-01W-A055-09 3f199ef5-ce92-487f-bf42-e16e986dc62c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-10A TCGA-B6-A0IQ-10A-01W-A055-09 3f199ef5-ce92-487f-bf42-e16e986dc62c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-10A TCGA-B6-A0IQ-10A-01X-A052-08 2aa45d96-3247-4d14-a0d2-79a142568a91 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0IQ TCGA-B6-A0IQ-10A TCGA-B6-A0IQ-10A-01X-A054-09 1ff437e0-1170-4e5d-81e0-20fc8452e94c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0IQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11D-A058-05 0c203ca8-c82b-4764-a0b7-b98413baefaf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11D-A059-01 268d0a2b-cd03-425f-8775-4202f6a2e339 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11D-A059-01 268d0a2b-cd03-425f-8775-4202f6a2e339 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F11_697168.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11D-A059-01 268d0a2b-cd03-425f-8775-4202f6a2e339 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F11_697168.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11D-A059-01 268d0a2b-cd03-425f-8775-4202f6a2e339 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F11_697168.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11D-A059-01 268d0a2b-cd03-425f-8775-4202f6a2e339 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F11_697168.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11D-A059-01 268d0a2b-cd03-425f-8775-4202f6a2e339 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F11_697168.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11D-A059-01 268d0a2b-cd03-425f-8775-4202f6a2e339 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F11_697168.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11D-A060-02 d5ce279a-3a7f-43e7-894c-265e9504c3fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11D-A074-08 5a572057-e698-4822-b097-76d0bc350ce2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11D-A075-09 4549c597-2fa4-4103-b5f7-f91204a57ca7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11D-A10P-05 d9db08ac-82f4-429a-a5c6-fe25ad415803 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11D-A10P-05 d9db08ac-82f4-429a-a5c6-fe25ad415803 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486023_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11D-A10P-05 d9db08ac-82f4-429a-a5c6-fe25ad415803 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486023_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11D-A10P-05 d9db08ac-82f4-429a-a5c6-fe25ad415803 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-B6-A0RE-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11D-A10P-05 d9db08ac-82f4-429a-a5c6-fe25ad415803 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-B6-A0RE-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11D-A128-09 1eb62abc-7928-405b-84cc-f091ca5347b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11R-A056-07 ad46ed65-3cc2-4956-9d90-3e1edca24417 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11R-A056-07 ad46ed65-3cc2-4956-9d90-3e1edca24417 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012500_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11R-A056-07 ad46ed65-3cc2-4956-9d90-3e1edca24417 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012500_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11R-A056-07 ad46ed65-3cc2-4956-9d90-3e1edca24417 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012500_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11R-A056-07 ad46ed65-3cc2-4956-9d90-3e1edca24417 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593259.TCGA-B6-A0RE-01A-11R-A056-07.110318_SN744_0079_AB042LABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11R-A056-07 ad46ed65-3cc2-4956-9d90-3e1edca24417 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593268.TCGA-B6-A0RE-01A-11R-A056-07.110318_SN744_0079_AB042LABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11R-A056-07 ad46ed65-3cc2-4956-9d90-3e1edca24417 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593290.TCGA-B6-A0RE-01A-11R-A056-07.110318_SN744_0079_AB042LABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11R-A057-13 c36bcfe9-3ae7-452b-921e-767abdd1c33f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11R-A057-13 c36bcfe9-3ae7-452b-921e-767abdd1c33f miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0RE-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11R-A057-13 c36bcfe9-3ae7-452b-921e-767abdd1c33f miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0RE-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11W-A070-08 d89d229e-841b-47ad-8892-fa3e0bddced8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11W-A071-09 db2bd5cf-f0a7-4874-89eb-15029447dae1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11W-A071-09 db2bd5cf-f0a7-4874-89eb-15029447dae1 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11X-A072-08 28b22aa2-0dc0-4fef-824c-401291e930fb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-01A TCGA-B6-A0RE-01A-11X-A073-09 bb7b1ad8-f05c-447d-8c4d-7a54e7c878a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-10A TCGA-B6-A0RE-10A-01D-A059-01 142a95af-020a-4740-9568-ad054804587c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-10A TCGA-B6-A0RE-10A-01D-A059-01 142a95af-020a-4740-9568-ad054804587c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G01_697092.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-B6-A0RE TCGA-B6-A0RE-10A TCGA-B6-A0RE-10A-01D-A059-01 142a95af-020a-4740-9568-ad054804587c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G01_697092.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-10A TCGA-B6-A0RE-10A-01D-A059-01 142a95af-020a-4740-9568-ad054804587c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G01_697092.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-10A TCGA-B6-A0RE-10A-01D-A059-01 142a95af-020a-4740-9568-ad054804587c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G01_697092.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-10A TCGA-B6-A0RE-10A-01D-A059-01 142a95af-020a-4740-9568-ad054804587c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G01_697092.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-10A TCGA-B6-A0RE-10A-01D-A059-01 142a95af-020a-4740-9568-ad054804587c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G01_697092.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-10A TCGA-B6-A0RE-10A-01D-A059-01 142a95af-020a-4740-9568-ad054804587c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G01_697092.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-10A TCGA-B6-A0RE-10A-01D-A059-01 142a95af-020a-4740-9568-ad054804587c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G01_697092.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-10A TCGA-B6-A0RE-10A-01D-A060-02 f2dee42d-9e1d-471d-bf3e-f1a0a27e16df Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-10A TCGA-B6-A0RE-10A-01D-A074-08 a7512500-5eb7-4058-bcae-5cf0237c4899 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-10A TCGA-B6-A0RE-10A-01D-A075-09 dc7b0b80-5d9a-4168-9422-26e3fe68b47d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-10A TCGA-B6-A0RE-10A-01D-A128-09 132c4ec7-509c-43c3-be90-3a95170e31d5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-10A TCGA-B6-A0RE-10A-01W-A070-08 693584a4-75ad-4653-86dc-6ec42fd6c3a7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-10A TCGA-B6-A0RE-10A-01W-A071-09 21d6d4ec-23c7-470d-8654-59d20f56c9a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-10A TCGA-B6-A0RE-10A-01W-A071-09 21d6d4ec-23c7-470d-8654-59d20f56c9a6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-10A TCGA-B6-A0RE-10A-01X-A072-08 f00a5eae-31f0-4e6e-804b-85710510cdbe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RE TCGA-B6-A0RE-10A TCGA-B6-A0RE-10A-01X-A073-09 3413241d-3c5c-4672-8864-d8dc7c807612 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11D-A058-05 fb194294-f4de-4c93-83c3-18b754b562d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11D-A059-01 64c61d5d-6be8-48e4-a111-3eb9a72f9efc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11D-A059-01 64c61d5d-6be8-48e4-a111-3eb9a72f9efc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E04_697112.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11D-A059-01 64c61d5d-6be8-48e4-a111-3eb9a72f9efc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E04_697112.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11D-A059-01 64c61d5d-6be8-48e4-a111-3eb9a72f9efc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E04_697112.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11D-A059-01 64c61d5d-6be8-48e4-a111-3eb9a72f9efc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E04_697112.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11D-A059-01 64c61d5d-6be8-48e4-a111-3eb9a72f9efc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E04_697112.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11D-A059-01 64c61d5d-6be8-48e4-a111-3eb9a72f9efc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E04_697112.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11D-A059-01 64c61d5d-6be8-48e4-a111-3eb9a72f9efc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E04_697112.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11D-A059-01 64c61d5d-6be8-48e4-a111-3eb9a72f9efc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E04_697112.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11D-A060-02 e71ed8ed-7371-4423-83c8-6075a6fc7c39 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11D-A074-08 5bb6f7ef-189c-4477-840a-13d45e9536c0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11D-A075-09 f835748a-8da4-4870-8f65-b865d04384e5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11D-A10P-05 483a41e6-06b2-446c-bbf4-f58ea6fcfb82 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11D-A10P-05 483a41e6-06b2-446c-bbf4-f58ea6fcfb82 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486019_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11D-A10P-05 483a41e6-06b2-446c-bbf4-f58ea6fcfb82 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486019_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11D-A10P-05 483a41e6-06b2-446c-bbf4-f58ea6fcfb82 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-B6-A0RG-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11D-A10P-05 483a41e6-06b2-446c-bbf4-f58ea6fcfb82 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-B6-A0RG-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11R-A056-07 006e88ce-ad31-45bf-8da5-802f0e387b3a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11R-A056-07 006e88ce-ad31-45bf-8da5-802f0e387b3a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012506_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11R-A056-07 006e88ce-ad31-45bf-8da5-802f0e387b3a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012506_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11R-A056-07 006e88ce-ad31-45bf-8da5-802f0e387b3a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012506_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11R-A056-07 006e88ce-ad31-45bf-8da5-802f0e387b3a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593240.TCGA-B6-A0RG-01A-11R-A056-07.110318_SN744_0079_AB042LABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11R-A056-07 006e88ce-ad31-45bf-8da5-802f0e387b3a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593246.TCGA-B6-A0RG-01A-11R-A056-07.110318_SN744_0079_AB042LABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11R-A056-07 006e88ce-ad31-45bf-8da5-802f0e387b3a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_593279.TCGA-B6-A0RG-01A-11R-A056-07.110318_SN744_0079_AB042LABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11R-A057-13 d4b57c1e-d0c2-43fb-8e4d-5eb2e55d6249 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11R-A057-13 d4b57c1e-d0c2-43fb-8e4d-5eb2e55d6249 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0RG-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11R-A057-13 d4b57c1e-d0c2-43fb-8e4d-5eb2e55d6249 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0RG-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11W-A070-08 4620521b-776f-4ef8-b82d-7e2cc21a6195 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11W-A071-09 9431c642-610e-4325-97b8-8b4c5c81cacd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11W-A071-09 9431c642-610e-4325-97b8-8b4c5c81cacd Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11X-A072-08 67ecb9e0-7810-4bf0-901c-8ed73d0365ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-01A TCGA-B6-A0RG-01A-11X-A073-09 063f16b2-e013-4ace-a084-057b07eb83af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-10A TCGA-B6-A0RG-10A-01D-A059-01 1aebcddc-0945-490d-976a-61e84872fc4f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-10A TCGA-B6-A0RG-10A-01D-A059-01 1aebcddc-0945-490d-976a-61e84872fc4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E07_697042.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-B6-A0RG TCGA-B6-A0RG-10A TCGA-B6-A0RG-10A-01D-A059-01 1aebcddc-0945-490d-976a-61e84872fc4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E07_697042.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-10A TCGA-B6-A0RG-10A-01D-A059-01 1aebcddc-0945-490d-976a-61e84872fc4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E07_697042.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-10A TCGA-B6-A0RG-10A-01D-A059-01 1aebcddc-0945-490d-976a-61e84872fc4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E07_697042.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-10A TCGA-B6-A0RG-10A-01D-A059-01 1aebcddc-0945-490d-976a-61e84872fc4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E07_697042.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-10A TCGA-B6-A0RG-10A-01D-A059-01 1aebcddc-0945-490d-976a-61e84872fc4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E07_697042.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-10A TCGA-B6-A0RG-10A-01D-A059-01 1aebcddc-0945-490d-976a-61e84872fc4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E07_697042.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-10A TCGA-B6-A0RG-10A-01D-A059-01 1aebcddc-0945-490d-976a-61e84872fc4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E07_697042.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-10A TCGA-B6-A0RG-10A-01D-A060-02 6f602aef-51fe-40ad-9984-0f95d27a4078 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-10A TCGA-B6-A0RG-10A-01D-A074-08 8562c367-1dd2-429e-9d35-d693c1ec88ac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-10A TCGA-B6-A0RG-10A-01D-A075-09 85d947e5-a1b5-4729-b978-d886be3f9207 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-10A TCGA-B6-A0RG-10A-01W-A070-08 cdd65b69-a036-4f07-9fad-b05f337167ca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-10A TCGA-B6-A0RG-10A-01W-A071-09 83830a90-9963-4aa2-8bc1-ae3a292de36a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-10A TCGA-B6-A0RG-10A-01W-A071-09 83830a90-9963-4aa2-8bc1-ae3a292de36a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-10A TCGA-B6-A0RG-10A-01X-A072-08 cee6824f-51e9-4f60-b50d-be681356c616 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RG TCGA-B6-A0RG-10A TCGA-B6-A0RG-10A-01X-A073-09 4a55ff3d-bacc-4db5-919a-4fbc6f13fb90 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21D-A10X-02 7a6c6358-e26a-4c03-8dfb-d21de5a6f3bd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21D-A10Y-09 6e59b987-b4f0-4078-af2d-482c299103b6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21D-A10Y-09 6e59b987-b4f0-4078-af2d-482c299103b6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21D-A111-01 5994c06d-ee9b-4ead-b3d1-2e1f286f7d6d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21D-A111-01 5994c06d-ee9b-4ead-b3d1-2e1f286f7d6d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H11_735194.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21D-A111-01 5994c06d-ee9b-4ead-b3d1-2e1f286f7d6d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H11_735194.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21D-A111-01 5994c06d-ee9b-4ead-b3d1-2e1f286f7d6d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H11_735194.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21D-A111-01 5994c06d-ee9b-4ead-b3d1-2e1f286f7d6d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H11_735194.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21D-A111-01 5994c06d-ee9b-4ead-b3d1-2e1f286f7d6d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H11_735194.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21D-A111-01 5994c06d-ee9b-4ead-b3d1-2e1f286f7d6d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H11_735194.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21D-A111-01 5994c06d-ee9b-4ead-b3d1-2e1f286f7d6d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H11_735194.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21D-A111-01 5994c06d-ee9b-4ead-b3d1-2e1f286f7d6d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H11_735194.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21D-A112-05 de077c84-1918-421e-807a-affc1beda6d7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21D-A112-05 de077c84-1918-421e-807a-affc1beda6d7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-B6-A0RH-01A-21D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21D-A112-05 de077c84-1918-421e-807a-affc1beda6d7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-B6-A0RH-01A-21D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21D-A112-05 de077c84-1918-421e-807a-affc1beda6d7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-B6-A0RH-01A-21D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21R-A114-13 797bfe2f-ac00-4722-8041-7fba682892d0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21R-A114-13 797bfe2f-ac00-4722-8041-7fba682892d0 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-B6-A0RH-01A-21R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21R-A114-13 797bfe2f-ac00-4722-8041-7fba682892d0 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-B6-A0RH-01A-21R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21R-A115-07 d40f62c9-c134-4477-98d7-11d343b5e867 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21R-A115-07 d40f62c9-c134-4477-98d7-11d343b5e867 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012787_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21R-A115-07 d40f62c9-c134-4477-98d7-11d343b5e867 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012787_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21R-A115-07 d40f62c9-c134-4477-98d7-11d343b5e867 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012787_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21R-A115-07 d40f62c9-c134-4477-98d7-11d343b5e867 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_410785.TCGA-B6-A0RH-01A-21R-A115-07.110607_UNC14-SN744_0125_BD0CRWABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21R-A115-07 d40f62c9-c134-4477-98d7-11d343b5e867 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_410828.TCGA-B6-A0RH-01A-21R-A115-07.110607_UNC14-SN744_0125_BD0CRWABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21R-A115-07 d40f62c9-c134-4477-98d7-11d343b5e867 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_410843.TCGA-B6-A0RH-01A-21R-A115-07.110607_UNC14-SN744_0125_BD0CRWABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-01A TCGA-B6-A0RH-01A-21W-A12T-09 007e0edb-30fc-40b3-a52b-ae93f9ea4d10 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-10A TCGA-B6-A0RH-10A-01D-A10Z-02 40dfde91-e537-473f-aa55-20422eb5713e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-10A TCGA-B6-A0RH-10A-01D-A110-09 6041e087-636b-4f3c-96d9-202e0d102899 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-10A TCGA-B6-A0RH-10A-01D-A110-09 6041e087-636b-4f3c-96d9-202e0d102899 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-10A TCGA-B6-A0RH-10A-01D-A113-01 14e67c23-80c4-4193-887f-5c57d5aaf1b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-10A TCGA-B6-A0RH-10A-01D-A113-01 14e67c23-80c4-4193-887f-5c57d5aaf1b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F01_735050.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-B6-A0RH TCGA-B6-A0RH-10A TCGA-B6-A0RH-10A-01D-A113-01 14e67c23-80c4-4193-887f-5c57d5aaf1b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F01_735050.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-10A TCGA-B6-A0RH-10A-01D-A113-01 14e67c23-80c4-4193-887f-5c57d5aaf1b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F01_735050.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-10A TCGA-B6-A0RH-10A-01D-A113-01 14e67c23-80c4-4193-887f-5c57d5aaf1b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F01_735050.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-10A TCGA-B6-A0RH-10A-01D-A113-01 14e67c23-80c4-4193-887f-5c57d5aaf1b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F01_735050.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-10A TCGA-B6-A0RH-10A-01D-A113-01 14e67c23-80c4-4193-887f-5c57d5aaf1b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F01_735050.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-10A TCGA-B6-A0RH-10A-01D-A113-01 14e67c23-80c4-4193-887f-5c57d5aaf1b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F01_735050.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-10A TCGA-B6-A0RH-10A-01D-A113-01 14e67c23-80c4-4193-887f-5c57d5aaf1b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F01_735050.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-B6-A0RH TCGA-B6-A0RH-10A TCGA-B6-A0RH-10A-01W-A12U-09 09be1158-da27-486d-9453-824b361ede94 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11D-A058-05 b186404c-5bd0-4578-a405-4bdefcb3bc9b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11D-A059-01 83cdf265-ec7f-40cf-ae0c-b1f28c791d7f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11D-A059-01 83cdf265-ec7f-40cf-ae0c-b1f28c791d7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B11_697062.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11D-A059-01 83cdf265-ec7f-40cf-ae0c-b1f28c791d7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B11_697062.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11D-A059-01 83cdf265-ec7f-40cf-ae0c-b1f28c791d7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B11_697062.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11D-A059-01 83cdf265-ec7f-40cf-ae0c-b1f28c791d7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B11_697062.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11D-A059-01 83cdf265-ec7f-40cf-ae0c-b1f28c791d7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B11_697062.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11D-A059-01 83cdf265-ec7f-40cf-ae0c-b1f28c791d7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B11_697062.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11D-A059-01 83cdf265-ec7f-40cf-ae0c-b1f28c791d7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B11_697062.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11D-A059-01 83cdf265-ec7f-40cf-ae0c-b1f28c791d7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B11_697062.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11D-A060-02 71542129-1393-4608-b81c-1767a5051763 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11D-A074-08 bc4abd2c-5c78-4991-897f-27f23f26dacb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11D-A075-09 907e3afb-9dea-4969-9cc3-41248e0c7734 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11D-A10P-05 9b832da4-5e4b-4791-90d3-03827a298225 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11D-A10P-05 9b832da4-5e4b-4791-90d3-03827a298225 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486014_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11D-A10P-05 9b832da4-5e4b-4791-90d3-03827a298225 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486014_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11D-A10P-05 9b832da4-5e4b-4791-90d3-03827a298225 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-B6-A0RI-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11D-A10P-05 9b832da4-5e4b-4791-90d3-03827a298225 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-B6-A0RI-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11R-A056-07 6f5986b6-28b9-4213-97a9-899190ea36dd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11R-A056-07 6f5986b6-28b9-4213-97a9-899190ea36dd Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012512_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11R-A056-07 6f5986b6-28b9-4213-97a9-899190ea36dd Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012512_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11R-A056-07 6f5986b6-28b9-4213-97a9-899190ea36dd Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012512_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11R-A056-07 6f5986b6-28b9-4213-97a9-899190ea36dd RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480944.TCGA-B6-A0RI-01A-11R-A056-07.110318_SN744_0080_BB042NABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11R-A056-07 6f5986b6-28b9-4213-97a9-899190ea36dd RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480953.TCGA-B6-A0RI-01A-11R-A056-07.110318_SN744_0080_BB042NABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11R-A056-07 6f5986b6-28b9-4213-97a9-899190ea36dd RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_481002.TCGA-B6-A0RI-01A-11R-A056-07.110318_SN744_0080_BB042NABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11R-A057-13 a4617479-13a9-4a26-b7cd-fe56818f7ba4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11R-A057-13 a4617479-13a9-4a26-b7cd-fe56818f7ba4 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0RI-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11R-A057-13 a4617479-13a9-4a26-b7cd-fe56818f7ba4 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0RI-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11W-A070-08 96431001-d283-4a7a-9e0a-4c216a4eaa09 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11W-A071-09 50d83050-b98c-4a1a-a673-91dbc67c37c6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11W-A071-09 50d83050-b98c-4a1a-a673-91dbc67c37c6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11X-A072-08 93d2927c-63b5-4524-a316-cad361544867 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-01A TCGA-B6-A0RI-01A-11X-A073-09 b61b33ca-ef01-46a6-9e2b-c2a0db09ca7d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-10A TCGA-B6-A0RI-10A-01D-A059-01 e2fd63d2-1573-42bb-b576-e12a8340e6e7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-10A TCGA-B6-A0RI-10A-01D-A059-01 e2fd63d2-1573-42bb-b576-e12a8340e6e7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E11_697066.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-B6-A0RI TCGA-B6-A0RI-10A TCGA-B6-A0RI-10A-01D-A059-01 e2fd63d2-1573-42bb-b576-e12a8340e6e7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E11_697066.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-10A TCGA-B6-A0RI-10A-01D-A059-01 e2fd63d2-1573-42bb-b576-e12a8340e6e7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E11_697066.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-10A TCGA-B6-A0RI-10A-01D-A059-01 e2fd63d2-1573-42bb-b576-e12a8340e6e7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E11_697066.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-10A TCGA-B6-A0RI-10A-01D-A059-01 e2fd63d2-1573-42bb-b576-e12a8340e6e7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E11_697066.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-10A TCGA-B6-A0RI-10A-01D-A059-01 e2fd63d2-1573-42bb-b576-e12a8340e6e7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E11_697066.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-10A TCGA-B6-A0RI-10A-01D-A059-01 e2fd63d2-1573-42bb-b576-e12a8340e6e7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E11_697066.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-10A TCGA-B6-A0RI-10A-01D-A059-01 e2fd63d2-1573-42bb-b576-e12a8340e6e7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E11_697066.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-10A TCGA-B6-A0RI-10A-01D-A060-02 c9478f7d-bfe3-4e80-8161-39b3d440fa16 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-10A TCGA-B6-A0RI-10A-01D-A074-08 0f421f84-4829-4856-89f4-91147f724e6a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-10A TCGA-B6-A0RI-10A-01D-A075-09 6d508f36-5d8e-4ea8-94d1-85a3c74ebb45 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-10A TCGA-B6-A0RI-10A-01W-A070-08 7d462b70-c658-46ae-a6af-b39c881d340f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-10A TCGA-B6-A0RI-10A-01W-A071-09 71508273-8303-4261-bcf2-b5ace767bfe2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-10A TCGA-B6-A0RI-10A-01W-A071-09 71508273-8303-4261-bcf2-b5ace767bfe2 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-10A TCGA-B6-A0RI-10A-01X-A072-08 d50bf0b9-c342-4f20-a761-59863a160ba8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RI TCGA-B6-A0RI-10A TCGA-B6-A0RI-10A-01X-A073-09 141ee2df-e7cd-4f1b-8427-a17e1575adc8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11D-A086-02 224954b0-13af-440f-a41e-690d749793a3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11D-A087-01 6217eb8d-0841-471a-aaba-b21023267625 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11D-A087-01 6217eb8d-0841-471a-aaba-b21023267625 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G12_698070.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11D-A087-01 6217eb8d-0841-471a-aaba-b21023267625 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G12_698070.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11D-A087-01 6217eb8d-0841-471a-aaba-b21023267625 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G12_698070.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11D-A087-01 6217eb8d-0841-471a-aaba-b21023267625 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G12_698070.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11D-A087-01 6217eb8d-0841-471a-aaba-b21023267625 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G12_698070.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11D-A087-01 6217eb8d-0841-471a-aaba-b21023267625 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G12_698070.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11D-A087-01 6217eb8d-0841-471a-aaba-b21023267625 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G12_698070.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11D-A087-01 6217eb8d-0841-471a-aaba-b21023267625 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G12_698070.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11D-A088-05 0b355c79-b739-46b4-9dd7-219cf2e3a822 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11D-A099-09 0d28966d-e03b-4b2a-ba07-b8f195efc29b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11D-A099-09 0d28966d-e03b-4b2a-ba07-b8f195efc29b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11D-A10P-05 86ebeec9-4bbf-4989-84c8-aaac4e17221e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11D-A10P-05 86ebeec9-4bbf-4989-84c8-aaac4e17221e DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-B6-A0RL-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11D-A10P-05 86ebeec9-4bbf-4989-84c8-aaac4e17221e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-B6-A0RL-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11R-A084-07 0e704d8f-c0c0-4165-83c4-a1fa93014894 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11R-A084-07 0e704d8f-c0c0-4165-83c4-a1fa93014894 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012590_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11R-A084-07 0e704d8f-c0c0-4165-83c4-a1fa93014894 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012590_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11R-A084-07 0e704d8f-c0c0-4165-83c4-a1fa93014894 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012590_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11R-A084-07 0e704d8f-c0c0-4165-83c4-a1fa93014894 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442972.TCGA-B6-A0RL-01A-11R-A084-07.110325_UNC13-SN749_0048_BB02DUABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11R-A084-07 0e704d8f-c0c0-4165-83c4-a1fa93014894 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443011.TCGA-B6-A0RL-01A-11R-A084-07.110325_UNC13-SN749_0048_BB02DUABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11R-A084-07 0e704d8f-c0c0-4165-83c4-a1fa93014894 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443109.TCGA-B6-A0RL-01A-11R-A084-07.110325_UNC13-SN749_0048_BB02DUABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11R-A085-13 1bd6ee51-08c3-459d-ab75-8230ed75275b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11R-A085-13 1bd6ee51-08c3-459d-ab75-8230ed75275b miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0RL-01A-11R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11R-A085-13 1bd6ee51-08c3-459d-ab75-8230ed75275b miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0RL-01A-11R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11W-A097-09 65b789c9-d8f6-4db1-baca-d6fd122c3697 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-01A TCGA-B6-A0RL-01A-11X-A098-09 5ddf491b-1d1a-42a1-afe2-39a73463e143 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-10A TCGA-B6-A0RL-10A-01D-A086-02 d553fffb-2961-4d54-97a4-28167649c84b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-10A TCGA-B6-A0RL-10A-01D-A087-01 05df16cd-58e7-435d-88b0-f04493e3838e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-10A TCGA-B6-A0RL-10A-01D-A087-01 05df16cd-58e7-435d-88b0-f04493e3838e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F06_697984.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-B6-A0RL TCGA-B6-A0RL-10A TCGA-B6-A0RL-10A-01D-A087-01 05df16cd-58e7-435d-88b0-f04493e3838e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F06_697984.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-10A TCGA-B6-A0RL-10A-01D-A087-01 05df16cd-58e7-435d-88b0-f04493e3838e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F06_697984.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-10A TCGA-B6-A0RL-10A-01D-A087-01 05df16cd-58e7-435d-88b0-f04493e3838e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F06_697984.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-10A TCGA-B6-A0RL-10A-01D-A087-01 05df16cd-58e7-435d-88b0-f04493e3838e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F06_697984.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-10A TCGA-B6-A0RL-10A-01D-A087-01 05df16cd-58e7-435d-88b0-f04493e3838e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F06_697984.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-10A TCGA-B6-A0RL-10A-01D-A087-01 05df16cd-58e7-435d-88b0-f04493e3838e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F06_697984.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-10A TCGA-B6-A0RL-10A-01D-A087-01 05df16cd-58e7-435d-88b0-f04493e3838e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F06_697984.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-10A TCGA-B6-A0RL-10A-01D-A099-09 3afa54cf-893b-4246-9962-50be699827d4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-10A TCGA-B6-A0RL-10A-01D-A099-09 3afa54cf-893b-4246-9962-50be699827d4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-10A TCGA-B6-A0RL-10A-01W-A097-09 b10f7469-afa8-4199-a2a0-f7e27c243e2f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RL TCGA-B6-A0RL-10A TCGA-B6-A0RL-10A-01X-A098-09 a2d617de-b4d9-49d8-94a5-452fb982495b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11D-A086-02 5e6d9fc8-320c-4e4d-b941-d0af491d3643 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11D-A087-01 4a733db9-a92f-457b-b0ef-25a0722e9d44 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11D-A087-01 4a733db9-a92f-457b-b0ef-25a0722e9d44 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D07_698122.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11D-A087-01 4a733db9-a92f-457b-b0ef-25a0722e9d44 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D07_698122.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11D-A087-01 4a733db9-a92f-457b-b0ef-25a0722e9d44 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D07_698122.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11D-A087-01 4a733db9-a92f-457b-b0ef-25a0722e9d44 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D07_698122.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11D-A087-01 4a733db9-a92f-457b-b0ef-25a0722e9d44 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D07_698122.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11D-A087-01 4a733db9-a92f-457b-b0ef-25a0722e9d44 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D07_698122.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11D-A087-01 4a733db9-a92f-457b-b0ef-25a0722e9d44 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D07_698122.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11D-A087-01 4a733db9-a92f-457b-b0ef-25a0722e9d44 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D07_698122.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11D-A088-05 19277b4b-1196-4e6c-a479-1de4b1d01e90 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11D-A099-09 3e03385e-f0fa-4e11-8bed-c6316802e1a9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11D-A099-09 3e03385e-f0fa-4e11-8bed-c6316802e1a9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11D-A099-09 3e03385e-f0fa-4e11-8bed-c6316802e1a9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11D-A10P-05 042bb7c6-d1b1-47ee-89b8-99cb9e071442 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11D-A10P-05 042bb7c6-d1b1-47ee-89b8-99cb9e071442 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791006_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11D-A10P-05 042bb7c6-d1b1-47ee-89b8-99cb9e071442 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791006_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11D-A10P-05 042bb7c6-d1b1-47ee-89b8-99cb9e071442 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-B6-A0RM-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11D-A10P-05 042bb7c6-d1b1-47ee-89b8-99cb9e071442 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-B6-A0RM-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11R-A084-07 17fdb26d-d808-4b0d-a794-6b664dae8b2b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11R-A084-07 17fdb26d-d808-4b0d-a794-6b664dae8b2b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012570_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11R-A084-07 17fdb26d-d808-4b0d-a794-6b664dae8b2b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012570_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11R-A084-07 17fdb26d-d808-4b0d-a794-6b664dae8b2b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012570_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11R-A084-07 17fdb26d-d808-4b0d-a794-6b664dae8b2b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451313.TCGA-B6-A0RM-01A-11R-A084-07.110315_UNC9-SN296_0160_BB05L8ABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11R-A084-07 17fdb26d-d808-4b0d-a794-6b664dae8b2b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451327.TCGA-B6-A0RM-01A-11R-A084-07.110315_UNC9-SN296_0160_BB05L8ABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11R-A084-07 17fdb26d-d808-4b0d-a794-6b664dae8b2b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451379.TCGA-B6-A0RM-01A-11R-A084-07.110315_UNC9-SN296_0160_BB05L8ABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11R-A085-13 5b525404-49f6-49cd-ace3-8838c0670202 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11R-A085-13 5b525404-49f6-49cd-ace3-8838c0670202 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0RM-01A-11R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11R-A085-13 5b525404-49f6-49cd-ace3-8838c0670202 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0RM-01A-11R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11W-A097-09 5879b0a3-3d02-4435-b5db-aff8935923db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-01A TCGA-B6-A0RM-01A-11X-A098-09 5db2c11f-aa7c-49a7-bedd-b7ddbb02638a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-10A TCGA-B6-A0RM-10A-01D-A086-02 e514a146-15a8-4455-a8c0-fd1837c71caa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-10A TCGA-B6-A0RM-10A-01D-A087-01 2dc6f0ae-4330-4447-aa01-238275012fd1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-10A TCGA-B6-A0RM-10A-01D-A087-01 2dc6f0ae-4330-4447-aa01-238275012fd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H02_698142.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-B6-A0RM TCGA-B6-A0RM-10A TCGA-B6-A0RM-10A-01D-A087-01 2dc6f0ae-4330-4447-aa01-238275012fd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H02_698142.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-10A TCGA-B6-A0RM-10A-01D-A087-01 2dc6f0ae-4330-4447-aa01-238275012fd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H02_698142.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-10A TCGA-B6-A0RM-10A-01D-A087-01 2dc6f0ae-4330-4447-aa01-238275012fd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H02_698142.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-10A TCGA-B6-A0RM-10A-01D-A087-01 2dc6f0ae-4330-4447-aa01-238275012fd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H02_698142.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-10A TCGA-B6-A0RM-10A-01D-A087-01 2dc6f0ae-4330-4447-aa01-238275012fd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H02_698142.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-10A TCGA-B6-A0RM-10A-01D-A087-01 2dc6f0ae-4330-4447-aa01-238275012fd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H02_698142.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-10A TCGA-B6-A0RM-10A-01D-A087-01 2dc6f0ae-4330-4447-aa01-238275012fd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H02_698142.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-10A TCGA-B6-A0RM-10A-01D-A099-09 a41df4f6-c661-43ef-b9df-bc0c74a46fe8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-10A TCGA-B6-A0RM-10A-01D-A099-09 a41df4f6-c661-43ef-b9df-bc0c74a46fe8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-10A TCGA-B6-A0RM-10A-01D-A099-09 a41df4f6-c661-43ef-b9df-bc0c74a46fe8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-10A TCGA-B6-A0RM-10A-01W-A097-09 585bcbfb-0dcb-45ea-bdbc-4b0ea121a69d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RM TCGA-B6-A0RM-10A TCGA-B6-A0RM-10A-01X-A098-09 9de68518-117e-4dd3-964e-8754f6f24f04 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12D-A086-02 8d6c61bf-9bfa-483c-8f8c-fc910ca14647 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12D-A087-01 ff2a4301-de9c-46b1-9b37-4c5c20935883 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12D-A087-01 ff2a4301-de9c-46b1-9b37-4c5c20935883 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C01_698002.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12D-A087-01 ff2a4301-de9c-46b1-9b37-4c5c20935883 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C01_698002.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12D-A087-01 ff2a4301-de9c-46b1-9b37-4c5c20935883 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C01_698002.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12D-A087-01 ff2a4301-de9c-46b1-9b37-4c5c20935883 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C01_698002.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12D-A087-01 ff2a4301-de9c-46b1-9b37-4c5c20935883 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C01_698002.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12D-A087-01 ff2a4301-de9c-46b1-9b37-4c5c20935883 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C01_698002.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12D-A087-01 ff2a4301-de9c-46b1-9b37-4c5c20935883 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C01_698002.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12D-A087-01 ff2a4301-de9c-46b1-9b37-4c5c20935883 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C01_698002.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12D-A088-05 df01d25e-098f-4180-aff9-b13456309df8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12D-A099-09 bbbcb493-2937-4a7b-8454-0abbbb379927 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12D-A099-09 bbbcb493-2937-4a7b-8454-0abbbb379927 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12D-A099-09 bbbcb493-2937-4a7b-8454-0abbbb379927 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12D-A10P-05 add57943-1be8-4fad-ae1d-5588eea79034 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12D-A10P-05 add57943-1be8-4fad-ae1d-5588eea79034 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791010_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12D-A10P-05 add57943-1be8-4fad-ae1d-5588eea79034 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791010_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12D-A10P-05 add57943-1be8-4fad-ae1d-5588eea79034 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-B6-A0RN-01A-12D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12D-A10P-05 add57943-1be8-4fad-ae1d-5588eea79034 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-B6-A0RN-01A-12D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12R-A084-07 c417152a-d278-4aeb-951e-a7b6ae5654c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12R-A084-07 c417152a-d278-4aeb-951e-a7b6ae5654c1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012595_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12R-A084-07 c417152a-d278-4aeb-951e-a7b6ae5654c1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012595_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12R-A084-07 c417152a-d278-4aeb-951e-a7b6ae5654c1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012595_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12R-A084-07 c417152a-d278-4aeb-951e-a7b6ae5654c1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443736.TCGA-B6-A0RN-01A-12R-A084-07.110315_UNC9-SN296_0160_BB05L8ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12R-A084-07 c417152a-d278-4aeb-951e-a7b6ae5654c1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_444104.TCGA-B6-A0RN-01A-12R-A084-07.110315_UNC9-SN296_0160_BB05L8ABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12R-A084-07 c417152a-d278-4aeb-951e-a7b6ae5654c1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_444187.TCGA-B6-A0RN-01A-12R-A084-07.110315_UNC9-SN296_0160_BB05L8ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12R-A085-13 d4d863d5-c1aa-4b1a-82c1-c334cf00c347 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12R-A085-13 d4d863d5-c1aa-4b1a-82c1-c334cf00c347 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0RN-01A-12R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12R-A085-13 d4d863d5-c1aa-4b1a-82c1-c334cf00c347 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0RN-01A-12R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12W-A097-09 5ff0f58f-74f6-4b19-aa5c-fb80a3432f57 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-01A TCGA-B6-A0RN-01A-12X-A098-09 58d80b49-e513-4c20-9aa5-3d0c58e0db8c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-10A TCGA-B6-A0RN-10A-01D-A086-02 770c153a-a3a6-4a58-9618-76e464adda43 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-10A TCGA-B6-A0RN-10A-01D-A087-01 54c1f385-ef90-4d59-afd1-df12bd2bbca2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-10A TCGA-B6-A0RN-10A-01D-A087-01 54c1f385-ef90-4d59-afd1-df12bd2bbca2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C03_697990.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-B6-A0RN TCGA-B6-A0RN-10A TCGA-B6-A0RN-10A-01D-A087-01 54c1f385-ef90-4d59-afd1-df12bd2bbca2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C03_697990.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-10A TCGA-B6-A0RN-10A-01D-A087-01 54c1f385-ef90-4d59-afd1-df12bd2bbca2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C03_697990.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-10A TCGA-B6-A0RN-10A-01D-A087-01 54c1f385-ef90-4d59-afd1-df12bd2bbca2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C03_697990.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-10A TCGA-B6-A0RN-10A-01D-A087-01 54c1f385-ef90-4d59-afd1-df12bd2bbca2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C03_697990.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-10A TCGA-B6-A0RN-10A-01D-A087-01 54c1f385-ef90-4d59-afd1-df12bd2bbca2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C03_697990.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-10A TCGA-B6-A0RN-10A-01D-A087-01 54c1f385-ef90-4d59-afd1-df12bd2bbca2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C03_697990.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-10A TCGA-B6-A0RN-10A-01D-A087-01 54c1f385-ef90-4d59-afd1-df12bd2bbca2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C03_697990.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-10A TCGA-B6-A0RN-10A-01D-A099-09 5465e36a-97f7-4408-81c1-9f8e836c1279 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-10A TCGA-B6-A0RN-10A-01D-A099-09 5465e36a-97f7-4408-81c1-9f8e836c1279 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-10A TCGA-B6-A0RN-10A-01D-A099-09 5465e36a-97f7-4408-81c1-9f8e836c1279 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-10A TCGA-B6-A0RN-10A-01W-A097-09 4cdd5b6e-ce00-4ac9-82a1-ddbf6ecda8e9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RN TCGA-B6-A0RN-10A TCGA-B6-A0RN-10A-01X-A098-09 2fc3c6f6-1096-4868-8faf-37d81c8def36 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22D-A086-02 04aa64eb-785c-46c0-bf7b-7f3ec5ce2d67 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22D-A087-01 c42276ca-218e-44c7-9ac3-b8fd17937399 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22D-A087-01 c42276ca-218e-44c7-9ac3-b8fd17937399 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C04_698144.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22D-A087-01 c42276ca-218e-44c7-9ac3-b8fd17937399 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C04_698144.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22D-A087-01 c42276ca-218e-44c7-9ac3-b8fd17937399 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C04_698144.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22D-A087-01 c42276ca-218e-44c7-9ac3-b8fd17937399 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C04_698144.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22D-A087-01 c42276ca-218e-44c7-9ac3-b8fd17937399 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C04_698144.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22D-A087-01 c42276ca-218e-44c7-9ac3-b8fd17937399 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C04_698144.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22D-A087-01 c42276ca-218e-44c7-9ac3-b8fd17937399 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C04_698144.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22D-A087-01 c42276ca-218e-44c7-9ac3-b8fd17937399 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_C04_698144.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22D-A088-05 69061b31-de98-445b-b0e3-85e51aa9a126 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22D-A099-09 05e12ff8-023b-4ac1-b35d-f97b42e3da7a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22D-A099-09 05e12ff8-023b-4ac1-b35d-f97b42e3da7a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22D-A099-09 05e12ff8-023b-4ac1-b35d-f97b42e3da7a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22D-A10P-05 c0ada7ce-d4b0-48b5-b611-b6371b6fbbad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22D-A10P-05 c0ada7ce-d4b0-48b5-b611-b6371b6fbbad DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791020_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22D-A10P-05 c0ada7ce-d4b0-48b5-b611-b6371b6fbbad DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791020_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22D-A10P-05 c0ada7ce-d4b0-48b5-b611-b6371b6fbbad DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-B6-A0RO-01A-22D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22D-A10P-05 c0ada7ce-d4b0-48b5-b611-b6371b6fbbad DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-B6-A0RO-01A-22D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22R-A084-07 d99fef01-1eb5-4300-8031-d5a157fd5b28 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22R-A084-07 d99fef01-1eb5-4300-8031-d5a157fd5b28 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012599_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22R-A084-07 d99fef01-1eb5-4300-8031-d5a157fd5b28 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012599_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22R-A084-07 d99fef01-1eb5-4300-8031-d5a157fd5b28 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012599_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22R-A084-07 d99fef01-1eb5-4300-8031-d5a157fd5b28 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476439.TCGA-B6-A0RO-01A-22R-A084-07.110406_UNC13-SN749_0050_BB05L2ABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22R-A084-07 d99fef01-1eb5-4300-8031-d5a157fd5b28 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476442.TCGA-B6-A0RO-01A-22R-A084-07.110406_UNC13-SN749_0050_BB05L2ABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22R-A084-07 d99fef01-1eb5-4300-8031-d5a157fd5b28 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476600.TCGA-B6-A0RO-01A-22R-A084-07.110406_UNC13-SN749_0050_BB05L2ABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22R-A085-13 a7ce4fb1-6bbe-464c-8cd2-2446cab60995 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22R-A085-13 a7ce4fb1-6bbe-464c-8cd2-2446cab60995 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0RO-01A-22R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22R-A085-13 a7ce4fb1-6bbe-464c-8cd2-2446cab60995 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0RO-01A-22R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22W-A097-09 6d477a9e-183d-494c-b249-c6f8cfc2e5f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-01A TCGA-B6-A0RO-01A-22X-A098-09 b3e2b7a8-cb3f-4146-9e8f-cb8d03190992 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-10A TCGA-B6-A0RO-10A-01D-A086-02 5381343b-b084-4918-bebd-84d7df3db5ea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-10A TCGA-B6-A0RO-10A-01D-A087-01 d751d70b-29b4-4548-a4f5-d4ec3027e392 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-10A TCGA-B6-A0RO-10A-01D-A087-01 d751d70b-29b4-4548-a4f5-d4ec3027e392 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E03_697998.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-B6-A0RO TCGA-B6-A0RO-10A TCGA-B6-A0RO-10A-01D-A087-01 d751d70b-29b4-4548-a4f5-d4ec3027e392 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E03_697998.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-10A TCGA-B6-A0RO-10A-01D-A087-01 d751d70b-29b4-4548-a4f5-d4ec3027e392 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E03_697998.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-10A TCGA-B6-A0RO-10A-01D-A087-01 d751d70b-29b4-4548-a4f5-d4ec3027e392 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E03_697998.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-10A TCGA-B6-A0RO-10A-01D-A087-01 d751d70b-29b4-4548-a4f5-d4ec3027e392 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E03_697998.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-10A TCGA-B6-A0RO-10A-01D-A087-01 d751d70b-29b4-4548-a4f5-d4ec3027e392 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E03_697998.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-10A TCGA-B6-A0RO-10A-01D-A087-01 d751d70b-29b4-4548-a4f5-d4ec3027e392 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E03_697998.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-10A TCGA-B6-A0RO-10A-01D-A087-01 d751d70b-29b4-4548-a4f5-d4ec3027e392 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E03_697998.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-10A TCGA-B6-A0RO-10A-01D-A099-09 87703b5d-774a-4a75-9bbf-cb58f58adcc4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-10A TCGA-B6-A0RO-10A-01D-A099-09 87703b5d-774a-4a75-9bbf-cb58f58adcc4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-10A TCGA-B6-A0RO-10A-01D-A099-09 87703b5d-774a-4a75-9bbf-cb58f58adcc4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-10A TCGA-B6-A0RO-10A-01W-A097-09 3feb391a-01a9-4bcb-be3f-87e5adcf591b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RO TCGA-B6-A0RO-10A TCGA-B6-A0RO-10A-01X-A098-09 3c3ed9bd-de9b-4797-b83c-723974e2ed57 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21D-A086-02 75fb70c5-a70d-4293-8077-f7eab248310d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21D-A087-01 b4881758-2563-45d9-8ad6-1121335492a8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21D-A087-01 b4881758-2563-45d9-8ad6-1121335492a8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G03_698058.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21D-A087-01 b4881758-2563-45d9-8ad6-1121335492a8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G03_698058.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21D-A087-01 b4881758-2563-45d9-8ad6-1121335492a8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G03_698058.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21D-A087-01 b4881758-2563-45d9-8ad6-1121335492a8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G03_698058.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21D-A087-01 b4881758-2563-45d9-8ad6-1121335492a8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G03_698058.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21D-A087-01 b4881758-2563-45d9-8ad6-1121335492a8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G03_698058.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21D-A087-01 b4881758-2563-45d9-8ad6-1121335492a8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G03_698058.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21D-A087-01 b4881758-2563-45d9-8ad6-1121335492a8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G03_698058.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21D-A088-05 c4c7d077-be8d-45d3-b21b-e01943e0a0db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21D-A099-09 efbdb449-b885-44bb-9054-9e97d6603cad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21D-A099-09 efbdb449-b885-44bb-9054-9e97d6603cad Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21D-A10P-05 9073cec9-954c-4f0b-ad0b-3dc9fa83e4c3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21D-A10P-05 9073cec9-954c-4f0b-ad0b-3dc9fa83e4c3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791010_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21D-A10P-05 9073cec9-954c-4f0b-ad0b-3dc9fa83e4c3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791010_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21D-A10P-05 9073cec9-954c-4f0b-ad0b-3dc9fa83e4c3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-B6-A0RP-01A-21D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21D-A10P-05 9073cec9-954c-4f0b-ad0b-3dc9fa83e4c3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-B6-A0RP-01A-21D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21R-A084-07 a77173cb-3e81-4957-a76f-18824d5e06dd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21R-A084-07 a77173cb-3e81-4957-a76f-18824d5e06dd Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012619_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21R-A084-07 a77173cb-3e81-4957-a76f-18824d5e06dd Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012619_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21R-A084-07 a77173cb-3e81-4957-a76f-18824d5e06dd Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012619_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21R-A084-07 a77173cb-3e81-4957-a76f-18824d5e06dd RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476627.TCGA-B6-A0RP-01A-21R-A084-07.110406_UNC13-SN749_0050_BB05L2ABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21R-A084-07 a77173cb-3e81-4957-a76f-18824d5e06dd RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476654.TCGA-B6-A0RP-01A-21R-A084-07.110406_UNC13-SN749_0050_BB05L2ABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21R-A084-07 a77173cb-3e81-4957-a76f-18824d5e06dd RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476788.TCGA-B6-A0RP-01A-21R-A084-07.110406_UNC13-SN749_0050_BB05L2ABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21R-A085-13 01c05d72-7d1a-480e-a20b-dd32d1b53fcb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21R-A085-13 01c05d72-7d1a-480e-a20b-dd32d1b53fcb miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0RP-01A-21R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21R-A085-13 01c05d72-7d1a-480e-a20b-dd32d1b53fcb miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0RP-01A-21R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21W-A097-09 d89d7989-a4f5-4928-8df8-49e126530dad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-01A TCGA-B6-A0RP-01A-21X-A098-09 a550fe8d-8cc9-43f0-8f4e-594631611d89 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-10A TCGA-B6-A0RP-10A-01D-A086-02 55793366-2349-451c-9264-8fa71b543a47 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-10A TCGA-B6-A0RP-10A-01D-A087-01 4b0379c3-d11c-4b0e-bf16-e13c87daf893 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-10A TCGA-B6-A0RP-10A-01D-A087-01 4b0379c3-d11c-4b0e-bf16-e13c87daf893 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E06_698046.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-B6-A0RP TCGA-B6-A0RP-10A TCGA-B6-A0RP-10A-01D-A087-01 4b0379c3-d11c-4b0e-bf16-e13c87daf893 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E06_698046.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-10A TCGA-B6-A0RP-10A-01D-A087-01 4b0379c3-d11c-4b0e-bf16-e13c87daf893 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E06_698046.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-10A TCGA-B6-A0RP-10A-01D-A087-01 4b0379c3-d11c-4b0e-bf16-e13c87daf893 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E06_698046.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-10A TCGA-B6-A0RP-10A-01D-A087-01 4b0379c3-d11c-4b0e-bf16-e13c87daf893 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E06_698046.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-10A TCGA-B6-A0RP-10A-01D-A087-01 4b0379c3-d11c-4b0e-bf16-e13c87daf893 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E06_698046.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-10A TCGA-B6-A0RP-10A-01D-A087-01 4b0379c3-d11c-4b0e-bf16-e13c87daf893 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E06_698046.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-10A TCGA-B6-A0RP-10A-01D-A087-01 4b0379c3-d11c-4b0e-bf16-e13c87daf893 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_E06_698046.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-10A TCGA-B6-A0RP-10A-01D-A099-09 d989e1d9-e13d-4767-b907-b450b745a00e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-10A TCGA-B6-A0RP-10A-01D-A099-09 d989e1d9-e13d-4767-b907-b450b745a00e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-10A TCGA-B6-A0RP-10A-01W-A097-09 41032d45-3ff4-4e7f-b234-8346b9f0304e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RP TCGA-B6-A0RP-10A TCGA-B6-A0RP-10A-01X-A098-09 00f7299a-af35-437b-90a9-cb794754a25a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11D-A10X-02 0c340c74-7c70-4cb1-bcb2-23692841cf94 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11D-A10Y-09 f425edf3-0d08-49bf-94f6-f03343873a6c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11D-A10Y-09 f425edf3-0d08-49bf-94f6-f03343873a6c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11D-A111-01 76bd56f0-661c-4165-8818-b564fe6d8b56 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11D-A111-01 76bd56f0-661c-4165-8818-b564fe6d8b56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G08_735052.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11D-A111-01 76bd56f0-661c-4165-8818-b564fe6d8b56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G08_735052.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11D-A111-01 76bd56f0-661c-4165-8818-b564fe6d8b56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G08_735052.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11D-A111-01 76bd56f0-661c-4165-8818-b564fe6d8b56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G08_735052.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11D-A111-01 76bd56f0-661c-4165-8818-b564fe6d8b56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G08_735052.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11D-A111-01 76bd56f0-661c-4165-8818-b564fe6d8b56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G08_735052.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11D-A111-01 76bd56f0-661c-4165-8818-b564fe6d8b56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G08_735052.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11D-A111-01 76bd56f0-661c-4165-8818-b564fe6d8b56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G08_735052.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11D-A112-05 a2b6971c-58b4-4729-ba1c-cd7ffe74cb54 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11D-A112-05 a2b6971c-58b4-4729-ba1c-cd7ffe74cb54 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-B6-A0RQ-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11D-A112-05 a2b6971c-58b4-4729-ba1c-cd7ffe74cb54 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-B6-A0RQ-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11D-A112-05 a2b6971c-58b4-4729-ba1c-cd7ffe74cb54 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-B6-A0RQ-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11R-A114-13 5db5b27d-e4a0-41ba-8d23-3da4141057b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11R-A114-13 5db5b27d-e4a0-41ba-8d23-3da4141057b0 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-B6-A0RQ-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11R-A114-13 5db5b27d-e4a0-41ba-8d23-3da4141057b0 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-B6-A0RQ-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11R-A115-07 184fe3c4-58bb-45c5-a9a5-9a8a56985f9f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11R-A115-07 184fe3c4-58bb-45c5-a9a5-9a8a56985f9f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012799_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11R-A115-07 184fe3c4-58bb-45c5-a9a5-9a8a56985f9f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012799_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11R-A115-07 184fe3c4-58bb-45c5-a9a5-9a8a56985f9f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012799_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11R-A115-07 184fe3c4-58bb-45c5-a9a5-9a8a56985f9f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_410826.TCGA-B6-A0RQ-01A-11R-A115-07.110607_UNC14-SN744_0125_BD0CRWABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11R-A115-07 184fe3c4-58bb-45c5-a9a5-9a8a56985f9f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_410833.TCGA-B6-A0RQ-01A-11R-A115-07.110607_UNC14-SN744_0125_BD0CRWABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11R-A115-07 184fe3c4-58bb-45c5-a9a5-9a8a56985f9f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_410859.TCGA-B6-A0RQ-01A-11R-A115-07.110607_UNC14-SN744_0125_BD0CRWABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-01A TCGA-B6-A0RQ-01A-11W-A12T-09 563d80e9-4d9a-4c20-b10f-e679bb3f3307 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-10A TCGA-B6-A0RQ-10A-01D-A10Z-02 1640006a-a685-47f3-ad3b-4123fc96c8dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-10A TCGA-B6-A0RQ-10A-01D-A110-09 fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-10A TCGA-B6-A0RQ-10A-01D-A110-09 fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-10A TCGA-B6-A0RQ-10A-01D-A113-01 712d92ef-1060-429d-ba91-65116db225bf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-10A TCGA-B6-A0RQ-10A-01D-A113-01 712d92ef-1060-429d-ba91-65116db225bf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B04_735182.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-B6-A0RQ TCGA-B6-A0RQ-10A TCGA-B6-A0RQ-10A-01D-A113-01 712d92ef-1060-429d-ba91-65116db225bf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B04_735182.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-10A TCGA-B6-A0RQ-10A-01D-A113-01 712d92ef-1060-429d-ba91-65116db225bf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B04_735182.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-10A TCGA-B6-A0RQ-10A-01D-A113-01 712d92ef-1060-429d-ba91-65116db225bf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B04_735182.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-10A TCGA-B6-A0RQ-10A-01D-A113-01 712d92ef-1060-429d-ba91-65116db225bf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B04_735182.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-10A TCGA-B6-A0RQ-10A-01D-A113-01 712d92ef-1060-429d-ba91-65116db225bf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B04_735182.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-10A TCGA-B6-A0RQ-10A-01D-A113-01 712d92ef-1060-429d-ba91-65116db225bf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B04_735182.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-10A TCGA-B6-A0RQ-10A-01D-A113-01 712d92ef-1060-429d-ba91-65116db225bf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B04_735182.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-B6-A0RQ TCGA-B6-A0RQ-10A TCGA-B6-A0RQ-10A-01W-A12U-09 eec568b0-bfef-4b0d-80dd-f5b9b36a5241 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11D-A086-02 d8152670-9af9-4fe6-8018-61c983492545 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11D-A087-01 e191f444-0987-42d9-baed-ceb74591810f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11D-A087-01 e191f444-0987-42d9-baed-ceb74591810f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G09_698146.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11D-A087-01 e191f444-0987-42d9-baed-ceb74591810f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G09_698146.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11D-A087-01 e191f444-0987-42d9-baed-ceb74591810f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G09_698146.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11D-A087-01 e191f444-0987-42d9-baed-ceb74591810f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G09_698146.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11D-A087-01 e191f444-0987-42d9-baed-ceb74591810f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G09_698146.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11D-A087-01 e191f444-0987-42d9-baed-ceb74591810f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G09_698146.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11D-A087-01 e191f444-0987-42d9-baed-ceb74591810f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G09_698146.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11D-A087-01 e191f444-0987-42d9-baed-ceb74591810f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G09_698146.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11D-A088-05 52d7d9be-889f-42e8-91e9-532a234226f0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11D-A099-09 6b3ff733-402d-4390-8f57-57a9ad9b9969 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11D-A099-09 6b3ff733-402d-4390-8f57-57a9ad9b9969 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11D-A10P-05 571d7634-1772-4bd4-8646-fb8d80502457 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11D-A10P-05 571d7634-1772-4bd4-8646-fb8d80502457 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791004_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11D-A10P-05 571d7634-1772-4bd4-8646-fb8d80502457 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791004_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11D-A10P-05 571d7634-1772-4bd4-8646-fb8d80502457 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-B6-A0RS-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11D-A10P-05 571d7634-1772-4bd4-8646-fb8d80502457 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-B6-A0RS-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11R-A084-07 be1f09ae-deec-45d7-8504-fea3f6e7feb4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11R-A084-07 be1f09ae-deec-45d7-8504-fea3f6e7feb4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012624_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11R-A084-07 be1f09ae-deec-45d7-8504-fea3f6e7feb4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012624_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11R-A084-07 be1f09ae-deec-45d7-8504-fea3f6e7feb4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012624_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11R-A084-07 be1f09ae-deec-45d7-8504-fea3f6e7feb4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_472460.TCGA-B6-A0RS-01A-11R-A084-07.110426_UNC12-SN629_0077_AB08WNABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11R-A084-07 be1f09ae-deec-45d7-8504-fea3f6e7feb4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_472573.TCGA-B6-A0RS-01A-11R-A084-07.110426_UNC12-SN629_0077_AB08WNABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11R-A084-07 be1f09ae-deec-45d7-8504-fea3f6e7feb4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_472582.TCGA-B6-A0RS-01A-11R-A084-07.110426_UNC12-SN629_0077_AB08WNABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11R-A085-13 99faa37f-e4fc-49f7-967b-5a1de12cae82 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11R-A085-13 99faa37f-e4fc-49f7-967b-5a1de12cae82 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0RS-01A-11R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11R-A085-13 99faa37f-e4fc-49f7-967b-5a1de12cae82 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0RS-01A-11R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11W-A097-09 3a3ac462-4d83-429b-90ad-571022f163f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-01A TCGA-B6-A0RS-01A-11X-A098-09 0ad34815-2754-4a10-a48e-6d3c86064b35 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-10A TCGA-B6-A0RS-10A-01D-A086-02 0776bdf4-2919-420c-b8b3-3d9f0c492fb1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-10A TCGA-B6-A0RS-10A-01D-A087-01 e75ab893-567c-473f-af45-e900d1c6e556 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-10A TCGA-B6-A0RS-10A-01D-A087-01 e75ab893-567c-473f-af45-e900d1c6e556 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A02_698094.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-B6-A0RS TCGA-B6-A0RS-10A TCGA-B6-A0RS-10A-01D-A087-01 e75ab893-567c-473f-af45-e900d1c6e556 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A02_698094.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-10A TCGA-B6-A0RS-10A-01D-A087-01 e75ab893-567c-473f-af45-e900d1c6e556 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A02_698094.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-10A TCGA-B6-A0RS-10A-01D-A087-01 e75ab893-567c-473f-af45-e900d1c6e556 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A02_698094.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-10A TCGA-B6-A0RS-10A-01D-A087-01 e75ab893-567c-473f-af45-e900d1c6e556 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A02_698094.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-10A TCGA-B6-A0RS-10A-01D-A087-01 e75ab893-567c-473f-af45-e900d1c6e556 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A02_698094.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-10A TCGA-B6-A0RS-10A-01D-A087-01 e75ab893-567c-473f-af45-e900d1c6e556 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A02_698094.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-10A TCGA-B6-A0RS-10A-01D-A087-01 e75ab893-567c-473f-af45-e900d1c6e556 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A02_698094.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-10A TCGA-B6-A0RS-10A-01D-A099-09 f5b71e34-7276-4b8b-9975-9ed481da1435 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-10A TCGA-B6-A0RS-10A-01W-A097-09 791db435-e2b8-42b6-a490-2e0783c0c237 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-10A TCGA-B6-A0RS-10A-01W-A097-09 791db435-e2b8-42b6-a490-2e0783c0c237 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RS TCGA-B6-A0RS-10A TCGA-B6-A0RS-10A-01X-A098-09 3a7ff30e-bc8e-49f7-80d4-65ee9053d17b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-01A TCGA-B6-A0RT-01A-21D-A086-02 94488ef7-0dc7-4e37-8281-e1a1a9a1bd74 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-01A TCGA-B6-A0RT-01A-21D-A087-01 ee1a99fc-1434-4d2f-a989-02edc2d64dba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-01A TCGA-B6-A0RT-01A-21D-A087-01 ee1a99fc-1434-4d2f-a989-02edc2d64dba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F03_698064.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-B6-A0RT TCGA-B6-A0RT-01A TCGA-B6-A0RT-01A-21D-A087-01 ee1a99fc-1434-4d2f-a989-02edc2d64dba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F03_698064.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-01A TCGA-B6-A0RT-01A-21D-A087-01 ee1a99fc-1434-4d2f-a989-02edc2d64dba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F03_698064.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-01A TCGA-B6-A0RT-01A-21D-A087-01 ee1a99fc-1434-4d2f-a989-02edc2d64dba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F03_698064.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-01A TCGA-B6-A0RT-01A-21D-A087-01 ee1a99fc-1434-4d2f-a989-02edc2d64dba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F03_698064.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-01A TCGA-B6-A0RT-01A-21D-A087-01 ee1a99fc-1434-4d2f-a989-02edc2d64dba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F03_698064.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-01A TCGA-B6-A0RT-01A-21D-A087-01 ee1a99fc-1434-4d2f-a989-02edc2d64dba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F03_698064.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-01A TCGA-B6-A0RT-01A-21D-A087-01 ee1a99fc-1434-4d2f-a989-02edc2d64dba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F03_698064.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-01A TCGA-B6-A0RT-01A-21D-A088-05 668bbd12-0cf0-44e4-b897-dd7905ff0d13 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-01A TCGA-B6-A0RT-01A-21D-A099-09 e1a297ed-1951-4d97-978c-56b452111ba5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-01A TCGA-B6-A0RT-01A-21D-A099-09 e1a297ed-1951-4d97-978c-56b452111ba5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-01A TCGA-B6-A0RT-01A-21D-A099-09 e1a297ed-1951-4d97-978c-56b452111ba5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-01A TCGA-B6-A0RT-01A-21D-A10P-05 f45734e4-feab-494a-92ae-ff498186dcfa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-01A TCGA-B6-A0RT-01A-21D-A10P-05 f45734e4-feab-494a-92ae-ff498186dcfa DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791010_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-01A TCGA-B6-A0RT-01A-21D-A10P-05 f45734e4-feab-494a-92ae-ff498186dcfa DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791010_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-01A TCGA-B6-A0RT-01A-21D-A10P-05 f45734e4-feab-494a-92ae-ff498186dcfa DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-B6-A0RT-01A-21D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-01A TCGA-B6-A0RT-01A-21D-A10P-05 f45734e4-feab-494a-92ae-ff498186dcfa DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-B6-A0RT-01A-21D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-01A TCGA-B6-A0RT-01A-21D-A128-09 1bb3a1c7-4d7b-4fb6-b54d-e94cbd0e32aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-01A TCGA-B6-A0RT-01A-21R-A084-07 2b721e04-5452-4b34-b3df-c6cdd04e87b1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-01A TCGA-B6-A0RT-01A-21R-A084-07 2b721e04-5452-4b34-b3df-c6cdd04e87b1 Expression-Genes AgilentG4502A_07_3 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1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-10A TCGA-B6-A0RT-10A-01D-A087-01 69e6c6b0-d593-4d65-a86e-4e54196e5f54 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D04_698088.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-B6-A0RT TCGA-B6-A0RT-10A TCGA-B6-A0RT-10A-01D-A087-01 69e6c6b0-d593-4d65-a86e-4e54196e5f54 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D04_698088.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-10A TCGA-B6-A0RT-10A-01D-A087-01 69e6c6b0-d593-4d65-a86e-4e54196e5f54 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D04_698088.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-10A TCGA-B6-A0RT-10A-01D-A087-01 69e6c6b0-d593-4d65-a86e-4e54196e5f54 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D04_698088.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-10A TCGA-B6-A0RT-10A-01D-A087-01 69e6c6b0-d593-4d65-a86e-4e54196e5f54 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D04_698088.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-10A TCGA-B6-A0RT-10A-01D-A087-01 69e6c6b0-d593-4d65-a86e-4e54196e5f54 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D04_698088.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-10A TCGA-B6-A0RT-10A-01D-A087-01 69e6c6b0-d593-4d65-a86e-4e54196e5f54 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D04_698088.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-10A TCGA-B6-A0RT-10A-01D-A087-01 69e6c6b0-d593-4d65-a86e-4e54196e5f54 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D04_698088.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-10A TCGA-B6-A0RT-10A-01D-A099-09 61f83071-b7fd-4037-aaf2-1db0349d8238 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-10A TCGA-B6-A0RT-10A-01D-A099-09 61f83071-b7fd-4037-aaf2-1db0349d8238 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-10A TCGA-B6-A0RT-10A-01D-A099-09 61f83071-b7fd-4037-aaf2-1db0349d8238 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-10A TCGA-B6-A0RT-10A-01D-A128-09 bc3ddd6b-6378-48e3-a676-380c45bf213f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-10A TCGA-B6-A0RT-10A-01W-A097-09 b7d90275-190a-4fcd-8908-f882262c21cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RT TCGA-B6-A0RT-10A TCGA-B6-A0RT-10A-01X-A098-09 da3a5868-1e40-48d5-be4a-e2b03046c165 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-01A TCGA-B6-A0RU-01A-11D-A086-02 e78e59cb-571f-498c-8df4-67367db2cf45 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-01A TCGA-B6-A0RU-01A-11D-A087-01 39df545d-dade-4342-8ac3-312fd5664692 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-01A TCGA-B6-A0RU-01A-11D-A087-01 39df545d-dade-4342-8ac3-312fd5664692 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B06_698012.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-B6-A0RU TCGA-B6-A0RU-01A TCGA-B6-A0RU-01A-11D-A087-01 39df545d-dade-4342-8ac3-312fd5664692 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B06_698012.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-01A TCGA-B6-A0RU-01A-11D-A087-01 39df545d-dade-4342-8ac3-312fd5664692 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B06_698012.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-01A TCGA-B6-A0RU-01A-11D-A087-01 39df545d-dade-4342-8ac3-312fd5664692 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B06_698012.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-01A TCGA-B6-A0RU-01A-11D-A087-01 39df545d-dade-4342-8ac3-312fd5664692 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B06_698012.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-01A TCGA-B6-A0RU-01A-11D-A087-01 39df545d-dade-4342-8ac3-312fd5664692 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B06_698012.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-01A TCGA-B6-A0RU-01A-11D-A087-01 39df545d-dade-4342-8ac3-312fd5664692 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B06_698012.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-01A TCGA-B6-A0RU-01A-11D-A087-01 39df545d-dade-4342-8ac3-312fd5664692 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-01A TCGA-B6-A0RU-01A-11D-A099-09 251371ac-ef46-4e11-b45e-a2aaa986a2d2 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-01A TCGA-B6-A0RU-01A-11D-A099-09 251371ac-ef46-4e11-b45e-a2aaa986a2d2 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-01A TCGA-B6-A0RU-01A-11D-A10P-05 d0e61007-7df4-47c9-9076-457622ee0f68 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-01A TCGA-B6-A0RU-01A-11D-A10P-05 d0e61007-7df4-47c9-9076-457622ee0f68 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791010_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-01A TCGA-B6-A0RU-01A-11D-A10P-05 d0e61007-7df4-47c9-9076-457622ee0f68 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791010_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-01A TCGA-B6-A0RU-01A-11D-A10P-05 d0e61007-7df4-47c9-9076-457622ee0f68 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-B6-A0RU-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-01A TCGA-B6-A0RU-01A-11D-A10P-05 d0e61007-7df4-47c9-9076-457622ee0f68 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-B6-A0RU-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-01A TCGA-B6-A0RU-01A-11D-A12L-09 97064332-1d4f-4571-93ff-354ffe6d7df9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-01A TCGA-B6-A0RU-01A-11R-A084-07 7abad802-817a-4d95-b022-f21cc4b1d9bc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-01A TCGA-B6-A0RU-01A-11R-A084-07 7abad802-817a-4d95-b022-f21cc4b1d9bc Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012585_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-B6-A0RU TCGA-B6-A0RU-01A TCGA-B6-A0RU-01A-11R-A084-07 7abad802-817a-4d95-b022-f21cc4b1d9bc Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012585_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-B6-A0RU TCGA-B6-A0RU-01A TCGA-B6-A0RU-01A-11R-A084-07 7abad802-817a-4d95-b022-f21cc4b1d9bc Expression-Genes AgilentG4502A_07_3 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-10A TCGA-B6-A0RU-10A-01D-A086-02 0251918a-7b76-43d1-96f5-4c15419982f5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-10A TCGA-B6-A0RU-10A-01D-A087-01 e3c0b9e5-6a10-4e40-97f3-51d27b3e915c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-10A TCGA-B6-A0RU-10A-01D-A087-01 e3c0b9e5-6a10-4e40-97f3-51d27b3e915c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B08_698082.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-B6-A0RU TCGA-B6-A0RU-10A TCGA-B6-A0RU-10A-01D-A087-01 e3c0b9e5-6a10-4e40-97f3-51d27b3e915c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B08_698082.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-10A TCGA-B6-A0RU-10A-01D-A087-01 e3c0b9e5-6a10-4e40-97f3-51d27b3e915c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B08_698082.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-10A TCGA-B6-A0RU-10A-01D-A087-01 e3c0b9e5-6a10-4e40-97f3-51d27b3e915c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B08_698082.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-10A TCGA-B6-A0RU-10A-01D-A087-01 e3c0b9e5-6a10-4e40-97f3-51d27b3e915c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B08_698082.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-10A TCGA-B6-A0RU-10A-01D-A087-01 e3c0b9e5-6a10-4e40-97f3-51d27b3e915c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B08_698082.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-10A TCGA-B6-A0RU-10A-01D-A087-01 e3c0b9e5-6a10-4e40-97f3-51d27b3e915c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B08_698082.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-10A TCGA-B6-A0RU-10A-01D-A087-01 e3c0b9e5-6a10-4e40-97f3-51d27b3e915c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B08_698082.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-10A TCGA-B6-A0RU-10A-01D-A099-09 5a22cccd-1c8a-425c-bc7c-3043bf4d8d15 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-10A TCGA-B6-A0RU-10A-01D-A099-09 5a22cccd-1c8a-425c-bc7c-3043bf4d8d15 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-10A TCGA-B6-A0RU-10A-01D-A099-09 5a22cccd-1c8a-425c-bc7c-3043bf4d8d15 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-10A TCGA-B6-A0RU-10A-01W-A097-09 df256215-9866-420f-8f42-847b6a01e118 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-10A TCGA-B6-A0RU-10A-01X-A098-09 1efe1398-6d40-4063-b3ae-861b79248c14 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RU TCGA-B6-A0RU-10B TCGA-B6-A0RU-10B-01D-A12L-09 b7759c1c-44ba-4c57-a975-c98eed1a9c76 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11D-A086-02 cf9b39f2-e272-4350-ae2a-24a7ef9c3971 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11D-A087-01 671267f1-3fef-4709-8df2-97b8cb9cf052 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11D-A087-01 671267f1-3fef-4709-8df2-97b8cb9cf052 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H01_698016.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11D-A087-01 671267f1-3fef-4709-8df2-97b8cb9cf052 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H01_698016.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11D-A087-01 671267f1-3fef-4709-8df2-97b8cb9cf052 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H01_698016.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11D-A087-01 671267f1-3fef-4709-8df2-97b8cb9cf052 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H01_698016.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11D-A087-01 671267f1-3fef-4709-8df2-97b8cb9cf052 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H01_698016.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11D-A087-01 671267f1-3fef-4709-8df2-97b8cb9cf052 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H01_698016.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11D-A087-01 671267f1-3fef-4709-8df2-97b8cb9cf052 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H01_698016.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11D-A087-01 671267f1-3fef-4709-8df2-97b8cb9cf052 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H01_698016.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11D-A088-05 61316ca5-2fa0-4672-94e1-c325d796bc3d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11D-A099-09 39b0b605-29ae-4e2c-81dc-319446c807dd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11D-A099-09 39b0b605-29ae-4e2c-81dc-319446c807dd Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11D-A099-09 39b0b605-29ae-4e2c-81dc-319446c807dd Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11D-A10P-05 f8427803-ed23-4e6f-ab31-6ca524549f94 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11D-A10P-05 f8427803-ed23-4e6f-ab31-6ca524549f94 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791004_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11D-A10P-05 f8427803-ed23-4e6f-ab31-6ca524549f94 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791004_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11D-A10P-05 f8427803-ed23-4e6f-ab31-6ca524549f94 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-B6-A0RV-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11D-A10P-05 f8427803-ed23-4e6f-ab31-6ca524549f94 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-B6-A0RV-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11R-A084-07 25068ef3-d87f-45e2-a15f-152b87e9dedb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11R-A084-07 25068ef3-d87f-45e2-a15f-152b87e9dedb Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012591_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11R-A084-07 25068ef3-d87f-45e2-a15f-152b87e9dedb Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012591_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11R-A084-07 25068ef3-d87f-45e2-a15f-152b87e9dedb Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012591_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11R-A084-07 25068ef3-d87f-45e2-a15f-152b87e9dedb RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442799.TCGA-B6-A0RV-01A-11R-A084-07.110325_UNC13-SN749_0048_BB02DUABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11R-A084-07 25068ef3-d87f-45e2-a15f-152b87e9dedb RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442923.TCGA-B6-A0RV-01A-11R-A084-07.110325_UNC13-SN749_0048_BB02DUABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11R-A084-07 25068ef3-d87f-45e2-a15f-152b87e9dedb RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442932.TCGA-B6-A0RV-01A-11R-A084-07.110325_UNC13-SN749_0048_BB02DUABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11R-A085-13 b6f3d86f-a03d-4406-b8e2-471eb0d92692 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11R-A085-13 b6f3d86f-a03d-4406-b8e2-471eb0d92692 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0RV-01A-11R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11R-A085-13 b6f3d86f-a03d-4406-b8e2-471eb0d92692 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0RV-01A-11R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11W-A097-09 8e36294e-ae5d-4f8a-8c79-1dc8465a8b6c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-01A TCGA-B6-A0RV-01A-11X-A098-09 44a3fea5-613b-4eaf-ae74-4e7d466709f1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-10A TCGA-B6-A0RV-10A-01D-A086-02 9feeb227-3986-4476-8161-6eda43836dd9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-10A TCGA-B6-A0RV-10A-01D-A087-01 17e74ddf-3b4e-4295-8621-1d4a917939f5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-10A TCGA-B6-A0RV-10A-01D-A087-01 17e74ddf-3b4e-4295-8621-1d4a917939f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H03_698052.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-B6-A0RV TCGA-B6-A0RV-10A TCGA-B6-A0RV-10A-01D-A087-01 17e74ddf-3b4e-4295-8621-1d4a917939f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H03_698052.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-10A TCGA-B6-A0RV-10A-01D-A087-01 17e74ddf-3b4e-4295-8621-1d4a917939f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H03_698052.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-10A TCGA-B6-A0RV-10A-01D-A087-01 17e74ddf-3b4e-4295-8621-1d4a917939f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H03_698052.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-10A TCGA-B6-A0RV-10A-01D-A087-01 17e74ddf-3b4e-4295-8621-1d4a917939f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H03_698052.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-10A TCGA-B6-A0RV-10A-01D-A087-01 17e74ddf-3b4e-4295-8621-1d4a917939f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H03_698052.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-10A TCGA-B6-A0RV-10A-01D-A087-01 17e74ddf-3b4e-4295-8621-1d4a917939f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H03_698052.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-10A TCGA-B6-A0RV-10A-01D-A087-01 17e74ddf-3b4e-4295-8621-1d4a917939f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H03_698052.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-10A TCGA-B6-A0RV-10A-01D-A099-09 00bd0921-b765-4fbd-ab79-4d85aba0d1f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-10A TCGA-B6-A0RV-10A-01D-A099-09 00bd0921-b765-4fbd-ab79-4d85aba0d1f6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-10A TCGA-B6-A0RV-10A-01D-A099-09 00bd0921-b765-4fbd-ab79-4d85aba0d1f6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-10A TCGA-B6-A0RV-10A-01W-A097-09 ae3c42b7-fefb-464a-a949-0976ece834b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0RV TCGA-B6-A0RV-10A TCGA-B6-A0RV-10A-01X-A098-09 dad32472-3ad0-483e-92cb-83d50ea16147 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0RV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11D-A10X-02 627817df-baac-4ad6-bd44-7c03113a81ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11D-A10Y-09 271d1985-1b15-4828-8261-4415ab048de9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11D-A10Y-09 271d1985-1b15-4828-8261-4415ab048de9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11D-A111-01 e217bf80-4072-44c6-9675-d1a1c3029977 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11D-A111-01 e217bf80-4072-44c6-9675-d1a1c3029977 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D12_735130.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11D-A111-01 e217bf80-4072-44c6-9675-d1a1c3029977 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D12_735130.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11D-A111-01 e217bf80-4072-44c6-9675-d1a1c3029977 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D12_735130.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11D-A111-01 e217bf80-4072-44c6-9675-d1a1c3029977 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D12_735130.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11D-A111-01 e217bf80-4072-44c6-9675-d1a1c3029977 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D12_735130.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11D-A111-01 e217bf80-4072-44c6-9675-d1a1c3029977 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D12_735130.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11D-A111-01 e217bf80-4072-44c6-9675-d1a1c3029977 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D12_735130.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11D-A111-01 e217bf80-4072-44c6-9675-d1a1c3029977 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D12_735130.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11D-A112-05 b2b4cede-37c0-48a0-ab2f-84fca7d46bdf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11D-A112-05 b2b4cede-37c0-48a0-ab2f-84fca7d46bdf DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-B6-A0WS-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11D-A112-05 b2b4cede-37c0-48a0-ab2f-84fca7d46bdf DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-B6-A0WS-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11D-A112-05 b2b4cede-37c0-48a0-ab2f-84fca7d46bdf DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-B6-A0WS-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11R-A114-13 e286d7aa-4746-4463-9598-d6d7231e58c5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11R-A114-13 e286d7aa-4746-4463-9598-d6d7231e58c5 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-B6-A0WS-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11R-A114-13 e286d7aa-4746-4463-9598-d6d7231e58c5 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-B6-A0WS-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11R-A115-07 44bd10a8-c4c0-466c-8cd8-31a5da70ba0b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11R-A115-07 44bd10a8-c4c0-466c-8cd8-31a5da70ba0b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012788_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11R-A115-07 44bd10a8-c4c0-466c-8cd8-31a5da70ba0b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012788_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11R-A115-07 44bd10a8-c4c0-466c-8cd8-31a5da70ba0b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012788_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11R-A115-07 44bd10a8-c4c0-466c-8cd8-31a5da70ba0b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_410770.TCGA-B6-A0WS-01A-11R-A115-07.110607_UNC14-SN744_0125_BD0CRWABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11R-A115-07 44bd10a8-c4c0-466c-8cd8-31a5da70ba0b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_410773.TCGA-B6-A0WS-01A-11R-A115-07.110607_UNC14-SN744_0125_BD0CRWABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11R-A115-07 44bd10a8-c4c0-466c-8cd8-31a5da70ba0b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_410841.TCGA-B6-A0WS-01A-11R-A115-07.110607_UNC14-SN744_0125_BD0CRWABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-01A TCGA-B6-A0WS-01A-11W-A12T-09 09d2f04c-a5e0-4e75-872a-1fc7fcdc870f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-10A TCGA-B6-A0WS-10A-01D-A10Z-02 a35892b8-0892-43dc-aa48-44dc4db2511f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-10A TCGA-B6-A0WS-10A-01D-A110-09 ad236498-9d88-4caf-afd9-4d7f068ceaa3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-10A TCGA-B6-A0WS-10A-01D-A110-09 ad236498-9d88-4caf-afd9-4d7f068ceaa3 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-10A TCGA-B6-A0WS-10A-01D-A113-01 f8988a5f-5cb0-43e8-9729-6b209459492d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-10A TCGA-B6-A0WS-10A-01D-A113-01 f8988a5f-5cb0-43e8-9729-6b209459492d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F02_735008.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-B6-A0WS TCGA-B6-A0WS-10A TCGA-B6-A0WS-10A-01D-A113-01 f8988a5f-5cb0-43e8-9729-6b209459492d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F02_735008.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-10A TCGA-B6-A0WS-10A-01D-A113-01 f8988a5f-5cb0-43e8-9729-6b209459492d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F02_735008.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-10A TCGA-B6-A0WS-10A-01D-A113-01 f8988a5f-5cb0-43e8-9729-6b209459492d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F02_735008.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-10A TCGA-B6-A0WS-10A-01D-A113-01 f8988a5f-5cb0-43e8-9729-6b209459492d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F02_735008.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-10A TCGA-B6-A0WS-10A-01D-A113-01 f8988a5f-5cb0-43e8-9729-6b209459492d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F02_735008.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-10A TCGA-B6-A0WS-10A-01D-A113-01 f8988a5f-5cb0-43e8-9729-6b209459492d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F02_735008.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-10A TCGA-B6-A0WS-10A-01D-A113-01 f8988a5f-5cb0-43e8-9729-6b209459492d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F02_735008.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-B6-A0WS TCGA-B6-A0WS-10A TCGA-B6-A0WS-10A-01W-A12U-09 f1e1ee13-a150-48a8-9063-232c35782ba6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11D-A106-02 3f2918a2-987d-4411-8bd0-f4ac0c4dabd3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11D-A107-01 5b9509ca-fb9c-4e51-b7d4-9c04f5cc141f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11D-A107-01 5b9509ca-fb9c-4e51-b7d4-9c04f5cc141f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D07_730908.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11D-A107-01 5b9509ca-fb9c-4e51-b7d4-9c04f5cc141f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D07_730908.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11D-A107-01 5b9509ca-fb9c-4e51-b7d4-9c04f5cc141f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D07_730908.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11D-A107-01 5b9509ca-fb9c-4e51-b7d4-9c04f5cc141f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D07_730908.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11D-A107-01 5b9509ca-fb9c-4e51-b7d4-9c04f5cc141f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D07_730908.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11D-A107-01 5b9509ca-fb9c-4e51-b7d4-9c04f5cc141f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D07_730908.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11D-A107-01 5b9509ca-fb9c-4e51-b7d4-9c04f5cc141f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D07_730908.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11D-A107-01 5b9509ca-fb9c-4e51-b7d4-9c04f5cc141f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D07_730908.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11D-A10A-05 d893a4ac-3b94-480b-aa6b-027ca11ee2e0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11D-A10A-05 d893a4ac-3b94-480b-aa6b-027ca11ee2e0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486029_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11D-A10A-05 d893a4ac-3b94-480b-aa6b-027ca11ee2e0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486029_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11D-A10A-05 d893a4ac-3b94-480b-aa6b-027ca11ee2e0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-B6-A0WT-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11D-A10A-05 d893a4ac-3b94-480b-aa6b-027ca11ee2e0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-B6-A0WT-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11D-A10G-09 5fb780fb-12bc-4195-8f0c-2c6e3cc36b49 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11D-A10G-09 5fb780fb-12bc-4195-8f0c-2c6e3cc36b49 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11D-A10G-09 5fb780fb-12bc-4195-8f0c-2c6e3cc36b49 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11R-A108-13 f7b6eb4a-2838-4f31-8b31-b681053fc542 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11R-A108-13 f7b6eb4a-2838-4f31-8b31-b681053fc542 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0WT-01A-11R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11R-A108-13 f7b6eb4a-2838-4f31-8b31-b681053fc542 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0WT-01A-11R-A108-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11R-A109-07 0507f62d-e776-4efb-bd51-dba9d74090bd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11R-A109-07 0507f62d-e776-4efb-bd51-dba9d74090bd Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012304_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11R-A109-07 0507f62d-e776-4efb-bd51-dba9d74090bd Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012304_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11R-A109-07 0507f62d-e776-4efb-bd51-dba9d74090bd Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012304_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11R-A109-07 0507f62d-e776-4efb-bd51-dba9d74090bd RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_826851.TCGA-B6-A0WT-01A-11R-A109-07.110913_UNC14-SN744_0165_BD0DCHABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11R-A109-07 0507f62d-e776-4efb-bd51-dba9d74090bd RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_826864.TCGA-B6-A0WT-01A-11R-A109-07.110913_UNC14-SN744_0165_BD0DCHABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11R-A109-07 0507f62d-e776-4efb-bd51-dba9d74090bd RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_826915.TCGA-B6-A0WT-01A-11R-A109-07.110913_UNC14-SN744_0165_BD0DCHABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-01A TCGA-B6-A0WT-01A-11X-A10H-09 6149b781-9adb-49ce-9716-c11b86ce2796 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-10A TCGA-B6-A0WT-10A-01D-A106-02 1df86143-d53d-4a85-8846-53ac039d7ebe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-10A TCGA-B6-A0WT-10A-01D-A107-01 f578ebc1-27ef-404d-bdbc-3f0aa0aee440 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-10A TCGA-B6-A0WT-10A-01D-A107-01 f578ebc1-27ef-404d-bdbc-3f0aa0aee440 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A02_730992.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-B6-A0WT TCGA-B6-A0WT-10A TCGA-B6-A0WT-10A-01D-A107-01 f578ebc1-27ef-404d-bdbc-3f0aa0aee440 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A02_730992.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-10A TCGA-B6-A0WT-10A-01D-A107-01 f578ebc1-27ef-404d-bdbc-3f0aa0aee440 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A02_730992.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-10A TCGA-B6-A0WT-10A-01D-A107-01 f578ebc1-27ef-404d-bdbc-3f0aa0aee440 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A02_730992.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-10A TCGA-B6-A0WT-10A-01D-A107-01 f578ebc1-27ef-404d-bdbc-3f0aa0aee440 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A02_730992.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-10A TCGA-B6-A0WT-10A-01D-A107-01 f578ebc1-27ef-404d-bdbc-3f0aa0aee440 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A02_730992.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-10A TCGA-B6-A0WT-10A-01D-A107-01 f578ebc1-27ef-404d-bdbc-3f0aa0aee440 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A02_730992.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-10A TCGA-B6-A0WT-10A-01D-A107-01 f578ebc1-27ef-404d-bdbc-3f0aa0aee440 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A02_730992.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-10A TCGA-B6-A0WT-10A-01D-A10G-09 e31846e7-c2f6-4f0c-9240-dbbc9cbb795b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-10A TCGA-B6-A0WT-10A-01D-A10G-09 e31846e7-c2f6-4f0c-9240-dbbc9cbb795b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-10A TCGA-B6-A0WT-10A-01D-A10G-09 e31846e7-c2f6-4f0c-9240-dbbc9cbb795b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-10A TCGA-B6-A0WT-10A-01D-A117-09 f970af32-fe83-4f33-8199-3bffc762fd19 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WT TCGA-B6-A0WT-10A TCGA-B6-A0WT-10A-01X-A10H-09 d880b385-18e7-483c-b97b-17c664a6d4f2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11D-A106-02 bccbad63-744e-4bb9-88b0-1a416885f8d4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11D-A107-01 b4ebf80f-787e-4a3f-b0a1-63ad56d36aa2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11D-A107-01 b4ebf80f-787e-4a3f-b0a1-63ad56d36aa2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D10_731060.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11D-A107-01 b4ebf80f-787e-4a3f-b0a1-63ad56d36aa2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D10_731060.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11D-A107-01 b4ebf80f-787e-4a3f-b0a1-63ad56d36aa2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D10_731060.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11D-A107-01 b4ebf80f-787e-4a3f-b0a1-63ad56d36aa2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D10_731060.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11D-A107-01 b4ebf80f-787e-4a3f-b0a1-63ad56d36aa2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D10_731060.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11D-A107-01 b4ebf80f-787e-4a3f-b0a1-63ad56d36aa2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D10_731060.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11D-A107-01 b4ebf80f-787e-4a3f-b0a1-63ad56d36aa2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D10_731060.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11D-A107-01 b4ebf80f-787e-4a3f-b0a1-63ad56d36aa2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D10_731060.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11D-A10A-05 51b40a3c-b321-4c5c-b085-75e8c2cbba1d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11D-A10A-05 51b40a3c-b321-4c5c-b085-75e8c2cbba1d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486005_R05C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11D-A10A-05 51b40a3c-b321-4c5c-b085-75e8c2cbba1d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486005_R05C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11D-A10A-05 51b40a3c-b321-4c5c-b085-75e8c2cbba1d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-B6-A0WV-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11D-A10A-05 51b40a3c-b321-4c5c-b085-75e8c2cbba1d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-B6-A0WV-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11D-A10G-09 b92107c5-c46f-4606-b4e9-2dab55ca4e9c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11D-A10G-09 b92107c5-c46f-4606-b4e9-2dab55ca4e9c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11R-A108-13 5f37cd93-c2b3-49f4-8b9d-0f8a8390ca78 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11R-A108-13 5f37cd93-c2b3-49f4-8b9d-0f8a8390ca78 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0WV-01A-11R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11R-A108-13 5f37cd93-c2b3-49f4-8b9d-0f8a8390ca78 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0WV-01A-11R-A108-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11R-A109-07 87bdfb78-8690-4569-ba85-592cd2390c24 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11R-A109-07 87bdfb78-8690-4569-ba85-592cd2390c24 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012309_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11R-A109-07 87bdfb78-8690-4569-ba85-592cd2390c24 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012309_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11R-A109-07 87bdfb78-8690-4569-ba85-592cd2390c24 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012309_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11R-A109-07 87bdfb78-8690-4569-ba85-592cd2390c24 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_826674.TCGA-B6-A0WV-01A-11R-A109-07.110913_UNC14-SN744_0165_BD0DCHABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11R-A109-07 87bdfb78-8690-4569-ba85-592cd2390c24 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_826930.TCGA-B6-A0WV-01A-11R-A109-07.110913_UNC14-SN744_0165_BD0DCHABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11R-A109-07 87bdfb78-8690-4569-ba85-592cd2390c24 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_827066.TCGA-B6-A0WV-01A-11R-A109-07.110913_UNC14-SN744_0165_BD0DCHABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-01A TCGA-B6-A0WV-01A-11X-A10H-09 0a5488f9-59da-425d-b443-ca20ea402475 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-10A TCGA-B6-A0WV-10A-01D-A106-02 779ecc86-8268-425a-aeb6-9c4c10f83362 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-10A TCGA-B6-A0WV-10A-01D-A107-01 10a86e86-9dac-4d86-a58b-1dd49f167cbb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-10A TCGA-B6-A0WV-10A-01D-A107-01 10a86e86-9dac-4d86-a58b-1dd49f167cbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F11_731088.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-B6-A0WV TCGA-B6-A0WV-10A TCGA-B6-A0WV-10A-01D-A107-01 10a86e86-9dac-4d86-a58b-1dd49f167cbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F11_731088.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-10A TCGA-B6-A0WV-10A-01D-A107-01 10a86e86-9dac-4d86-a58b-1dd49f167cbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F11_731088.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-10A TCGA-B6-A0WV-10A-01D-A107-01 10a86e86-9dac-4d86-a58b-1dd49f167cbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F11_731088.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-10A TCGA-B6-A0WV-10A-01D-A107-01 10a86e86-9dac-4d86-a58b-1dd49f167cbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F11_731088.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-10A TCGA-B6-A0WV-10A-01D-A107-01 10a86e86-9dac-4d86-a58b-1dd49f167cbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F11_731088.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-10A TCGA-B6-A0WV-10A-01D-A107-01 10a86e86-9dac-4d86-a58b-1dd49f167cbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F11_731088.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-10A TCGA-B6-A0WV-10A-01D-A107-01 10a86e86-9dac-4d86-a58b-1dd49f167cbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F11_731088.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-10A TCGA-B6-A0WV-10A-01D-A10G-09 ea0de699-16b8-468d-ab85-223eb3880566 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-10A TCGA-B6-A0WV-10A-01D-A10G-09 ea0de699-16b8-468d-ab85-223eb3880566 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0WV TCGA-B6-A0WV-10A TCGA-B6-A0WV-10A-01X-A10H-09 77f459a4-e74c-43da-be82-f3190c875457 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11D-A106-02 330dbe8b-cb6b-443c-90e1-7b3d09a688a3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11D-A107-01 5494421e-ace6-4315-8337-edbd09f2e30e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11D-A107-01 5494421e-ace6-4315-8337-edbd09f2e30e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F12_730940.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11D-A107-01 5494421e-ace6-4315-8337-edbd09f2e30e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F12_730940.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11D-A107-01 5494421e-ace6-4315-8337-edbd09f2e30e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F12_730940.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11D-A107-01 5494421e-ace6-4315-8337-edbd09f2e30e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F12_730940.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11D-A107-01 5494421e-ace6-4315-8337-edbd09f2e30e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F12_730940.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11D-A107-01 5494421e-ace6-4315-8337-edbd09f2e30e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F12_730940.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11D-A107-01 5494421e-ace6-4315-8337-edbd09f2e30e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F12_730940.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11D-A107-01 5494421e-ace6-4315-8337-edbd09f2e30e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F12_730940.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11D-A10A-05 afd950dc-ded2-4f20-b037-bc07a5406543 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11D-A10A-05 afd950dc-ded2-4f20-b037-bc07a5406543 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486029_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11D-A10A-05 afd950dc-ded2-4f20-b037-bc07a5406543 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486029_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11D-A10A-05 afd950dc-ded2-4f20-b037-bc07a5406543 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-B6-A0WW-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11D-A10A-05 afd950dc-ded2-4f20-b037-bc07a5406543 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-B6-A0WW-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11D-A10G-09 e9d6f59d-7d87-4fda-ab6f-e9c2501b8600 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11D-A10G-09 e9d6f59d-7d87-4fda-ab6f-e9c2501b8600 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11R-A108-13 2f825257-6e1b-4d7c-8dba-a5d8bd146d5c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11R-A108-13 2f825257-6e1b-4d7c-8dba-a5d8bd146d5c miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0WW-01A-11R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11R-A108-13 2f825257-6e1b-4d7c-8dba-a5d8bd146d5c miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0WW-01A-11R-A108-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11R-A109-07 3bdcdadf-67da-4a50-b311-81196c0c8362 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11R-A109-07 3bdcdadf-67da-4a50-b311-81196c0c8362 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012314_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11R-A109-07 3bdcdadf-67da-4a50-b311-81196c0c8362 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012314_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11R-A109-07 3bdcdadf-67da-4a50-b311-81196c0c8362 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012314_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11R-A109-07 3bdcdadf-67da-4a50-b311-81196c0c8362 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_826593.TCGA-B6-A0WW-01A-11R-A109-07.110913_UNC14-SN744_0165_BD0DCHABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11R-A109-07 3bdcdadf-67da-4a50-b311-81196c0c8362 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_826639.TCGA-B6-A0WW-01A-11R-A109-07.110913_UNC14-SN744_0165_BD0DCHABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11R-A109-07 3bdcdadf-67da-4a50-b311-81196c0c8362 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_826760.TCGA-B6-A0WW-01A-11R-A109-07.110913_UNC14-SN744_0165_BD0DCHABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-01A TCGA-B6-A0WW-01A-11X-A10H-09 35de19a1-e0bc-4bda-b85f-97c00b943644 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-10A TCGA-B6-A0WW-10A-01D-A106-02 7f055449-8699-4909-8293-0d8a4a0b9750 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-10A TCGA-B6-A0WW-10A-01D-A107-01 288f4d26-f31a-4cd3-a58f-450f12fc3326 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B09_730960.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B09_730960.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B09_730960.ismpolish.data.txt'. TCGA-B6-A0WW TCGA-B6-A0WW-10A TCGA-B6-A0WW-10A-01D-A107-01 288f4d26-f31a-4cd3-a58f-450f12fc3326 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B09_730960.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B09_730960.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B09_730960.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B09_730960.ismpolish.data.txt'. TCGA-B6-A0WW TCGA-B6-A0WW-10A TCGA-B6-A0WW-10A-01D-A10G-09 1d66ccf6-8c14-405d-a686-07122687567f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-10A TCGA-B6-A0WW-10A-01D-A10G-09 1d66ccf6-8c14-405d-a686-07122687567f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0WW TCGA-B6-A0WW-10A TCGA-B6-A0WW-10A-01X-A10H-09 f78aa83a-ab98-45e5-89e2-7313fd4aa24a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11D-A106-02 2e68a71f-63e7-4a6b-b375-566a712f22db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11D-A107-01 b0c0bc65-5f9b-4f23-a1c9-e3f86c0ef65c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11D-A107-01 b0c0bc65-5f9b-4f23-a1c9-e3f86c0ef65c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G04_731000.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11D-A107-01 b0c0bc65-5f9b-4f23-a1c9-e3f86c0ef65c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G04_731000.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11D-A107-01 b0c0bc65-5f9b-4f23-a1c9-e3f86c0ef65c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G04_731000.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11D-A107-01 b0c0bc65-5f9b-4f23-a1c9-e3f86c0ef65c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G04_731000.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11D-A107-01 b0c0bc65-5f9b-4f23-a1c9-e3f86c0ef65c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G04_731000.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11D-A107-01 b0c0bc65-5f9b-4f23-a1c9-e3f86c0ef65c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G04_731000.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11D-A107-01 b0c0bc65-5f9b-4f23-a1c9-e3f86c0ef65c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G04_731000.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11D-A107-01 b0c0bc65-5f9b-4f23-a1c9-e3f86c0ef65c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G04_731000.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11D-A10A-05 1daddfc8-81c9-4fb6-887d-121251420d38 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11D-A10A-05 1daddfc8-81c9-4fb6-887d-121251420d38 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486018_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11D-A10A-05 1daddfc8-81c9-4fb6-887d-121251420d38 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486018_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11D-A10A-05 1daddfc8-81c9-4fb6-887d-121251420d38 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-B6-A0WX-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11D-A10A-05 1daddfc8-81c9-4fb6-887d-121251420d38 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-B6-A0WX-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11D-A10G-09 47b5d831-5287-4f62-b17a-6e5eff2e4184 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11D-A10G-09 47b5d831-5287-4f62-b17a-6e5eff2e4184 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11D-A10G-09 47b5d831-5287-4f62-b17a-6e5eff2e4184 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11R-A108-13 21fbb9dc-72ff-4691-93d5-6f28f74f96ff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11R-A108-13 21fbb9dc-72ff-4691-93d5-6f28f74f96ff miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0WX-01A-11R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11R-A108-13 21fbb9dc-72ff-4691-93d5-6f28f74f96ff miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0WX-01A-11R-A108-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11R-A109-07 8dc04505-fae5-4185-b3f8-53882fbbb4fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11R-A109-07 8dc04505-fae5-4185-b3f8-53882fbbb4fd Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012374_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11R-A109-07 8dc04505-fae5-4185-b3f8-53882fbbb4fd Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012374_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11R-A109-07 8dc04505-fae5-4185-b3f8-53882fbbb4fd Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012374_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11R-A109-07 8dc04505-fae5-4185-b3f8-53882fbbb4fd RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_466630.TCGA-B6-A0WX-01A-11R-A109-07.110506_UNC9-SN296_0179_AB0BEFABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11R-A109-07 8dc04505-fae5-4185-b3f8-53882fbbb4fd RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_466661.TCGA-B6-A0WX-01A-11R-A109-07.110506_UNC9-SN296_0179_AB0BEFABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11R-A109-07 8dc04505-fae5-4185-b3f8-53882fbbb4fd RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_466663.TCGA-B6-A0WX-01A-11R-A109-07.110506_UNC9-SN296_0179_AB0BEFABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-01A TCGA-B6-A0WX-01A-11X-A10H-09 aec43aff-ff8d-48bb-8735-fb7b6d0f9ba7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-10A TCGA-B6-A0WX-10A-01D-A106-02 b530fd01-d0a2-4902-a72c-c1f1ae6709ac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-10A TCGA-B6-A0WX-10A-01D-A107-01 d468f1f7-043a-4203-9781-592c0a08f1e0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-10A TCGA-B6-A0WX-10A-01D-A107-01 d468f1f7-043a-4203-9781-592c0a08f1e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A07_730906.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-B6-A0WX TCGA-B6-A0WX-10A TCGA-B6-A0WX-10A-01D-A107-01 d468f1f7-043a-4203-9781-592c0a08f1e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A07_730906.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-10A TCGA-B6-A0WX-10A-01D-A107-01 d468f1f7-043a-4203-9781-592c0a08f1e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A07_730906.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-10A TCGA-B6-A0WX-10A-01D-A107-01 d468f1f7-043a-4203-9781-592c0a08f1e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A07_730906.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-10A TCGA-B6-A0WX-10A-01D-A107-01 d468f1f7-043a-4203-9781-592c0a08f1e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A07_730906.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-10A TCGA-B6-A0WX-10A-01D-A107-01 d468f1f7-043a-4203-9781-592c0a08f1e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A07_730906.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-10A TCGA-B6-A0WX-10A-01D-A107-01 d468f1f7-043a-4203-9781-592c0a08f1e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A07_730906.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-10A TCGA-B6-A0WX-10A-01D-A107-01 d468f1f7-043a-4203-9781-592c0a08f1e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A07_730906.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-10A TCGA-B6-A0WX-10A-01D-A10G-09 57c92229-f196-429c-8c85-874e2906a3d4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-10A TCGA-B6-A0WX-10A-01D-A10G-09 57c92229-f196-429c-8c85-874e2906a3d4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-10A TCGA-B6-A0WX-10A-01D-A10G-09 57c92229-f196-429c-8c85-874e2906a3d4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0WX TCGA-B6-A0WX-10A TCGA-B6-A0WX-10A-01X-A10H-09 2af32879-05fd-4408-bae2-8f135549ed19 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11D-A106-02 4b36f725-1c1c-469c-b900-a086ce805f8b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11D-A107-01 2e1d7b07-9e79-47b6-98c2-d5966f1760d2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11D-A107-01 2e1d7b07-9e79-47b6-98c2-d5966f1760d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G09_730944.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11D-A107-01 2e1d7b07-9e79-47b6-98c2-d5966f1760d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G09_730944.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11D-A107-01 2e1d7b07-9e79-47b6-98c2-d5966f1760d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G09_730944.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11D-A107-01 2e1d7b07-9e79-47b6-98c2-d5966f1760d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G09_730944.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11D-A107-01 2e1d7b07-9e79-47b6-98c2-d5966f1760d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G09_730944.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11D-A107-01 2e1d7b07-9e79-47b6-98c2-d5966f1760d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G09_730944.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11D-A107-01 2e1d7b07-9e79-47b6-98c2-d5966f1760d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G09_730944.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11D-A107-01 2e1d7b07-9e79-47b6-98c2-d5966f1760d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_G09_730944.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11D-A10A-05 14b52dc1-bb31-4a8c-9da0-19b63b0c5a96 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11D-A10A-05 14b52dc1-bb31-4a8c-9da0-19b63b0c5a96 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486018_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11D-A10A-05 14b52dc1-bb31-4a8c-9da0-19b63b0c5a96 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486018_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11D-A10A-05 14b52dc1-bb31-4a8c-9da0-19b63b0c5a96 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-B6-A0WY-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11D-A10A-05 14b52dc1-bb31-4a8c-9da0-19b63b0c5a96 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-B6-A0WY-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11D-A10G-09 c973a902-abdf-41a3-8250-57011dfef1f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11D-A10G-09 c973a902-abdf-41a3-8250-57011dfef1f4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11R-A108-13 60a2c808-0b75-4ea5-b06e-78d31cd603dd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11R-A108-13 60a2c808-0b75-4ea5-b06e-78d31cd603dd miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0WY-01A-11R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11R-A108-13 60a2c808-0b75-4ea5-b06e-78d31cd603dd miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0WY-01A-11R-A108-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11R-A109-07 90a60ebe-ce7e-4b64-af2a-1676f46e6601 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11R-A109-07 90a60ebe-ce7e-4b64-af2a-1676f46e6601 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012379_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11R-A109-07 90a60ebe-ce7e-4b64-af2a-1676f46e6601 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012379_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11R-A109-07 90a60ebe-ce7e-4b64-af2a-1676f46e6601 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012379_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11R-A109-07 90a60ebe-ce7e-4b64-af2a-1676f46e6601 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_466584.TCGA-B6-A0WY-01A-11R-A109-07.110506_UNC9-SN296_0179_AB0BEFABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11R-A109-07 90a60ebe-ce7e-4b64-af2a-1676f46e6601 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_466608.TCGA-B6-A0WY-01A-11R-A109-07.110506_UNC9-SN296_0179_AB0BEFABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11R-A109-07 90a60ebe-ce7e-4b64-af2a-1676f46e6601 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_466666.TCGA-B6-A0WY-01A-11R-A109-07.110506_UNC9-SN296_0179_AB0BEFABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-01A TCGA-B6-A0WY-01A-11X-A10H-09 c1d7de1e-0b36-49e2-85d6-19078dcd56ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-10A TCGA-B6-A0WY-10A-01D-A106-02 5b439b32-3cf4-4fe6-8921-84415a235c4f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-10A TCGA-B6-A0WY-10A-01D-A107-01 5c3cec08-f114-4ba3-8c7c-31dea9fcef73 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-10A TCGA-B6-A0WY-10A-01D-A107-01 5c3cec08-f114-4ba3-8c7c-31dea9fcef73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C03_731064.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-B6-A0WY TCGA-B6-A0WY-10A TCGA-B6-A0WY-10A-01D-A107-01 5c3cec08-f114-4ba3-8c7c-31dea9fcef73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C03_731064.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-10A TCGA-B6-A0WY-10A-01D-A107-01 5c3cec08-f114-4ba3-8c7c-31dea9fcef73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C03_731064.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-10A TCGA-B6-A0WY-10A-01D-A107-01 5c3cec08-f114-4ba3-8c7c-31dea9fcef73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C03_731064.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-10A TCGA-B6-A0WY-10A-01D-A107-01 5c3cec08-f114-4ba3-8c7c-31dea9fcef73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C03_731064.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-10A TCGA-B6-A0WY-10A-01D-A107-01 5c3cec08-f114-4ba3-8c7c-31dea9fcef73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C03_731064.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-10A TCGA-B6-A0WY-10A-01D-A107-01 5c3cec08-f114-4ba3-8c7c-31dea9fcef73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C03_731064.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-10A TCGA-B6-A0WY-10A-01D-A107-01 5c3cec08-f114-4ba3-8c7c-31dea9fcef73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C03_731064.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-10A TCGA-B6-A0WY-10A-01D-A10G-09 d6007264-3412-46b3-8775-f2c42146de20 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-10A TCGA-B6-A0WY-10A-01D-A10G-09 d6007264-3412-46b3-8775-f2c42146de20 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0WY TCGA-B6-A0WY-10A TCGA-B6-A0WY-10A-01X-A10H-09 efa2fb5f-0a31-4f05-81e1-5678c777a420 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-01A TCGA-B6-A0WZ-01A-11D-A106-02 804f9c6b-0721-4440-bd8a-66daef4f8825 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-01A TCGA-B6-A0WZ-01A-11D-A107-01 f9bccbe0-28c1-4d60-b656-432527eaf911 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-01A TCGA-B6-A0WZ-01A-11D-A107-01 f9bccbe0-28c1-4d60-b656-432527eaf911 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E05_731014.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-B6-A0WZ TCGA-B6-A0WZ-01A TCGA-B6-A0WZ-01A-11D-A107-01 f9bccbe0-28c1-4d60-b656-432527eaf911 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E05_731014.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-01A TCGA-B6-A0WZ-01A-11D-A107-01 f9bccbe0-28c1-4d60-b656-432527eaf911 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E05_731014.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-01A TCGA-B6-A0WZ-01A-11D-A107-01 f9bccbe0-28c1-4d60-b656-432527eaf911 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E05_731014.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-01A TCGA-B6-A0WZ-01A-11D-A107-01 f9bccbe0-28c1-4d60-b656-432527eaf911 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E05_731014.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-01A TCGA-B6-A0WZ-01A-11D-A107-01 f9bccbe0-28c1-4d60-b656-432527eaf911 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_E05_731014.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-01A TCGA-B6-A0WZ-01A-11D-A10A-05 491b32cf-68ba-4c39-b201-a425787c4f61 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-01A TCGA-B6-A0WZ-01A-11D-A10A-05 491b32cf-68ba-4c39-b201-a425787c4f61 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486005_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-01A TCGA-B6-A0WZ-01A-11D-A10A-05 491b32cf-68ba-4c39-b201-a425787c4f61 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486005_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-01A TCGA-B6-A0WZ-01A-11D-A10A-05 491b32cf-68ba-4c39-b201-a425787c4f61 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-B6-A0WZ-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-01A TCGA-B6-A0WZ-01A-11D-A10A-05 491b32cf-68ba-4c39-b201-a425787c4f61 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-B6-A0WZ-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-01A TCGA-B6-A0WZ-01A-11D-A10G-09 f6b8b1a9-370c-4023-b8bd-934e2a3d913a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-01A TCGA-B6-A0WZ-01A-11D-A10G-09 f6b8b1a9-370c-4023-b8bd-934e2a3d913a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-01A TCGA-B6-A0WZ-01A-11D-A10G-09 f6b8b1a9-370c-4023-b8bd-934e2a3d913a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-01A TCGA-B6-A0WZ-01A-11R-A108-13 eb95cdde-0d30-46ba-ae3d-b7a04f338b4d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-01A TCGA-B6-A0WZ-01A-11R-A108-13 eb95cdde-0d30-46ba-ae3d-b7a04f338b4d miRNASeq IlluminaGA_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-01A TCGA-B6-A0WZ-01A-11R-A109-07 dc4a013a-c52a-40ef-8aeb-e1163519cdb8 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012393_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-01A TCGA-B6-A0WZ-01A-11R-A109-07 dc4a013a-c52a-40ef-8aeb-e1163519cdb8 Expression-Genes AgilentG4502A_07_3 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_465808.TCGA-B6-A0WZ-01A-11R-A109-07.110506_UNC9-SN296_0179_AB0BEFABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-01A TCGA-B6-A0WZ-01A-11X-A10H-09 3bc32629-f5b1-4fbe-ae24-5dc96d3bc962 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-10A TCGA-B6-A0WZ-10A-01D-A106-02 0f24ef4f-048b-4ba4-8435-96ea9ed69362 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-10A TCGA-B6-A0WZ-10A-01D-A107-01 20837da1-4df5-4954-b9cc-e6a949ba2f3c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-10A TCGA-B6-A0WZ-10A-01D-A107-01 20837da1-4df5-4954-b9cc-e6a949ba2f3c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H03_731054.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-B6-A0WZ TCGA-B6-A0WZ-10A TCGA-B6-A0WZ-10A-01D-A107-01 20837da1-4df5-4954-b9cc-e6a949ba2f3c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H03_731054.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-10A TCGA-B6-A0WZ-10A-01D-A107-01 20837da1-4df5-4954-b9cc-e6a949ba2f3c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H03_731054.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-10A TCGA-B6-A0WZ-10A-01D-A107-01 20837da1-4df5-4954-b9cc-e6a949ba2f3c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H03_731054.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-10A TCGA-B6-A0WZ-10A-01D-A107-01 20837da1-4df5-4954-b9cc-e6a949ba2f3c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H03_731054.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-10A TCGA-B6-A0WZ-10A-01D-A107-01 20837da1-4df5-4954-b9cc-e6a949ba2f3c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H03_731054.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-10A TCGA-B6-A0WZ-10A-01D-A107-01 20837da1-4df5-4954-b9cc-e6a949ba2f3c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H03_731054.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-10A TCGA-B6-A0WZ-10A-01D-A107-01 20837da1-4df5-4954-b9cc-e6a949ba2f3c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H03_731054.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-10A TCGA-B6-A0WZ-10A-01D-A10G-09 a477963b-b0e1-4394-bfa3-cfc26c651ac8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-10A TCGA-B6-A0WZ-10A-01D-A10G-09 a477963b-b0e1-4394-bfa3-cfc26c651ac8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-10A TCGA-B6-A0WZ-10A-01D-A10G-09 a477963b-b0e1-4394-bfa3-cfc26c651ac8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-10A TCGA-B6-A0WZ-10A-01D-A117-09 b0427b4c-209c-4d38-8a38-41c456fab02e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0WZ TCGA-B6-A0WZ-10A TCGA-B6-A0WZ-10A-01X-A10H-09 a0087744-fd23-48cb-a3cf-71eb17ed086e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0WZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21D-A10X-02 1ccf1d2c-993a-4e8f-b168-eede22de0367 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21D-A10Y-09 264fb6ef-65be-48fd-8216-6c493b620ad8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21D-A10Y-09 264fb6ef-65be-48fd-8216-6c493b620ad8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21D-A111-01 c9d3c5ea-400a-47dd-82e1-7b2d3d0f9fa6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21D-A111-01 c9d3c5ea-400a-47dd-82e1-7b2d3d0f9fa6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H12_735038.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21D-A111-01 c9d3c5ea-400a-47dd-82e1-7b2d3d0f9fa6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H12_735038.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21D-A111-01 c9d3c5ea-400a-47dd-82e1-7b2d3d0f9fa6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H12_735038.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21D-A111-01 c9d3c5ea-400a-47dd-82e1-7b2d3d0f9fa6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H12_735038.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21D-A111-01 c9d3c5ea-400a-47dd-82e1-7b2d3d0f9fa6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H12_735038.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21D-A111-01 c9d3c5ea-400a-47dd-82e1-7b2d3d0f9fa6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H12_735038.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21D-A111-01 c9d3c5ea-400a-47dd-82e1-7b2d3d0f9fa6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H12_735038.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21D-A111-01 c9d3c5ea-400a-47dd-82e1-7b2d3d0f9fa6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H12_735038.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21D-A112-05 50a2ccdf-76b2-4e9b-a629-6c75463e0a8e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21D-A112-05 50a2ccdf-76b2-4e9b-a629-6c75463e0a8e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-B6-A0X0-01A-21D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21D-A112-05 50a2ccdf-76b2-4e9b-a629-6c75463e0a8e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-B6-A0X0-01A-21D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21D-A112-05 50a2ccdf-76b2-4e9b-a629-6c75463e0a8e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-B6-A0X0-01A-21D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21R-A114-13 f493eea5-8c79-4a23-942e-c3b8987c0077 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21R-A114-13 f493eea5-8c79-4a23-942e-c3b8987c0077 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-B6-A0X0-01A-21R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21R-A114-13 f493eea5-8c79-4a23-942e-c3b8987c0077 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-B6-A0X0-01A-21R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21R-A115-07 222a566c-2bad-4b47-97dc-ca1f60a9a981 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21R-A115-07 222a566c-2bad-4b47-97dc-ca1f60a9a981 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012800_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21R-A115-07 222a566c-2bad-4b47-97dc-ca1f60a9a981 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012800_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21R-A115-07 222a566c-2bad-4b47-97dc-ca1f60a9a981 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012800_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21R-A115-07 222a566c-2bad-4b47-97dc-ca1f60a9a981 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_846969.TCGA-B6-A0X0-01A-21R-A115-07.110607_UNC14-SN744_0125_BD0CRWABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21R-A115-07 222a566c-2bad-4b47-97dc-ca1f60a9a981 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_846973.TCGA-B6-A0X0-01A-21R-A115-07.110607_UNC14-SN744_0125_BD0CRWABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21R-A115-07 222a566c-2bad-4b47-97dc-ca1f60a9a981 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_846998.TCGA-B6-A0X0-01A-21R-A115-07.110607_UNC14-SN744_0125_BD0CRWABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-01A TCGA-B6-A0X0-01A-21W-A12T-09 1c091dbe-f100-47f1-85de-40f418f3871f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-10A TCGA-B6-A0X0-10A-01D-A10Z-02 ae41c287-6049-47ce-b157-d17f98e8620f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-10A TCGA-B6-A0X0-10A-01D-A110-09 daa07354-8687-4350-9d9c-d95db1a71517 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-10A TCGA-B6-A0X0-10A-01D-A110-09 daa07354-8687-4350-9d9c-d95db1a71517 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-10A TCGA-B6-A0X0-10A-01D-A113-01 90093514-415c-45d5-bcb3-58412189bb1d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-10A TCGA-B6-A0X0-10A-01D-A113-01 90093514-415c-45d5-bcb3-58412189bb1d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C10_735088.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-B6-A0X0 TCGA-B6-A0X0-10A TCGA-B6-A0X0-10A-01D-A113-01 90093514-415c-45d5-bcb3-58412189bb1d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C10_735088.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-10A TCGA-B6-A0X0-10A-01D-A113-01 90093514-415c-45d5-bcb3-58412189bb1d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C10_735088.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-10A TCGA-B6-A0X0-10A-01D-A113-01 90093514-415c-45d5-bcb3-58412189bb1d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C10_735088.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-10A TCGA-B6-A0X0-10A-01D-A113-01 90093514-415c-45d5-bcb3-58412189bb1d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C10_735088.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-10A TCGA-B6-A0X0-10A-01D-A113-01 90093514-415c-45d5-bcb3-58412189bb1d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C10_735088.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-10A TCGA-B6-A0X0-10A-01D-A113-01 90093514-415c-45d5-bcb3-58412189bb1d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C10_735088.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-10A TCGA-B6-A0X0-10A-01D-A113-01 90093514-415c-45d5-bcb3-58412189bb1d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C10_735088.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-B6-A0X0 TCGA-B6-A0X0-10A TCGA-B6-A0X0-10A-01W-A12U-09 24c71da2-7958-46cd-b82b-5c3598443689 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11D-A106-02 5b4091cc-5930-48bf-a6cb-db342d9476fe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11D-A107-01 66665c22-d495-4ae1-a6fe-378d96c05c1a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11D-A107-01 66665c22-d495-4ae1-a6fe-378d96c05c1a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F02_730978.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11D-A107-01 66665c22-d495-4ae1-a6fe-378d96c05c1a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F02_730978.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11D-A107-01 66665c22-d495-4ae1-a6fe-378d96c05c1a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F02_730978.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11D-A107-01 66665c22-d495-4ae1-a6fe-378d96c05c1a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F02_730978.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11D-A107-01 66665c22-d495-4ae1-a6fe-378d96c05c1a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F02_730978.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11D-A107-01 66665c22-d495-4ae1-a6fe-378d96c05c1a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F02_730978.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11D-A107-01 66665c22-d495-4ae1-a6fe-378d96c05c1a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F02_730978.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11D-A107-01 66665c22-d495-4ae1-a6fe-378d96c05c1a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F02_730978.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11D-A10A-05 c2f13279-8c17-4f75-b097-43671f99429b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11D-A10A-05 c2f13279-8c17-4f75-b097-43671f99429b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486029_R05C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11D-A10A-05 c2f13279-8c17-4f75-b097-43671f99429b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486029_R05C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11D-A10A-05 c2f13279-8c17-4f75-b097-43671f99429b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-B6-A0X1-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11D-A10A-05 c2f13279-8c17-4f75-b097-43671f99429b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-B6-A0X1-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11D-A10G-09 a492abf9-0cd3-402c-89e2-c49d650ef540 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11D-A10G-09 a492abf9-0cd3-402c-89e2-c49d650ef540 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11D-A10G-09 a492abf9-0cd3-402c-89e2-c49d650ef540 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11R-A108-13 940a9e85-5f3b-4eaf-86f2-ec3ba01a1c95 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11R-A109-07 897b769d-f66a-4baf-b5fa-fe92ed49a8b4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11R-A109-07 897b769d-f66a-4baf-b5fa-fe92ed49a8b4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012683_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11R-A109-07 897b769d-f66a-4baf-b5fa-fe92ed49a8b4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012683_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11R-A109-07 897b769d-f66a-4baf-b5fa-fe92ed49a8b4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012683_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11R-A109-07 897b769d-f66a-4baf-b5fa-fe92ed49a8b4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_826822.TCGA-B6-A0X1-01A-11R-A109-07.110913_UNC14-SN744_0165_BD0DCHABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11R-A109-07 897b769d-f66a-4baf-b5fa-fe92ed49a8b4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_826857.TCGA-B6-A0X1-01A-11R-A109-07.110913_UNC14-SN744_0165_BD0DCHABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11R-A109-07 897b769d-f66a-4baf-b5fa-fe92ed49a8b4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_826945.TCGA-B6-A0X1-01A-11R-A109-07.110913_UNC14-SN744_0165_BD0DCHABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-01A TCGA-B6-A0X1-01A-11X-A10H-09 fdc8f431-4d1d-43c3-8570-effe9fc75d72 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-10A TCGA-B6-A0X1-10A-01D-A106-02 17f4ebeb-264e-4b9a-8d94-5556afefec8a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-10A TCGA-B6-A0X1-10A-01D-A107-01 456e42d3-fc07-4e35-9dbe-4575622aa9c2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-10A TCGA-B6-A0X1-10A-01D-A107-01 456e42d3-fc07-4e35-9dbe-4575622aa9c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B01_730958.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-B6-A0X1 TCGA-B6-A0X1-10A TCGA-B6-A0X1-10A-01D-A107-01 456e42d3-fc07-4e35-9dbe-4575622aa9c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B01_730958.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-10A TCGA-B6-A0X1-10A-01D-A107-01 456e42d3-fc07-4e35-9dbe-4575622aa9c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B01_730958.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-10A TCGA-B6-A0X1-10A-01D-A107-01 456e42d3-fc07-4e35-9dbe-4575622aa9c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B01_730958.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-10A TCGA-B6-A0X1-10A-01D-A107-01 456e42d3-fc07-4e35-9dbe-4575622aa9c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B01_730958.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-10A TCGA-B6-A0X1-10A-01D-A107-01 456e42d3-fc07-4e35-9dbe-4575622aa9c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B01_730958.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-10A TCGA-B6-A0X1-10A-01D-A107-01 456e42d3-fc07-4e35-9dbe-4575622aa9c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B01_730958.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-10A TCGA-B6-A0X1-10A-01D-A107-01 456e42d3-fc07-4e35-9dbe-4575622aa9c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B01_730958.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-10A TCGA-B6-A0X1-10A-01D-A10G-09 6be7f421-8454-4669-8d95-7f881ae37c19 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-10A TCGA-B6-A0X1-10A-01D-A117-09 8c39f4bf-c997-41a9-8b36-37e9e9e6124b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-10A TCGA-B6-A0X1-10A-01D-A117-09 8c39f4bf-c997-41a9-8b36-37e9e9e6124b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-10A TCGA-B6-A0X1-10A-01D-A117-09 8c39f4bf-c997-41a9-8b36-37e9e9e6124b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0X1 TCGA-B6-A0X1-10A TCGA-B6-A0X1-10A-01X-A10H-09 187f1069-d697-41e2-9bc0-52593e7d148c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11D-A106-02 062a41cc-4b23-49e2-aff8-3cfe34de9a36 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11D-A107-01 90a0edb3-d939-4c43-bbc5-0ed30023e35b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11D-A107-01 90a0edb3-d939-4c43-bbc5-0ed30023e35b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D03_731006.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11D-A107-01 90a0edb3-d939-4c43-bbc5-0ed30023e35b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D03_731006.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11D-A107-01 90a0edb3-d939-4c43-bbc5-0ed30023e35b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D03_731006.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11D-A107-01 90a0edb3-d939-4c43-bbc5-0ed30023e35b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D03_731006.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11D-A107-01 90a0edb3-d939-4c43-bbc5-0ed30023e35b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D03_731006.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11D-A107-01 90a0edb3-d939-4c43-bbc5-0ed30023e35b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D03_731006.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11D-A107-01 90a0edb3-d939-4c43-bbc5-0ed30023e35b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D03_731006.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11D-A107-01 90a0edb3-d939-4c43-bbc5-0ed30023e35b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D03_731006.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11D-A10A-05 9d686c55-c606-4626-921c-1502519b0de6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11D-A10A-05 9d686c55-c606-4626-921c-1502519b0de6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486025_R05C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11D-A10A-05 9d686c55-c606-4626-921c-1502519b0de6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486025_R05C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11D-A10A-05 9d686c55-c606-4626-921c-1502519b0de6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-B6-A0X4-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11D-A10A-05 9d686c55-c606-4626-921c-1502519b0de6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-B6-A0X4-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11D-A10G-09 edbe95af-e727-4d0f-a2a4-a3c9f2afa901 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11D-A10G-09 edbe95af-e727-4d0f-a2a4-a3c9f2afa901 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11R-A108-13 f37d4ffc-c08a-4a5c-9f8c-3d8c919642c7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11R-A108-13 f37d4ffc-c08a-4a5c-9f8c-3d8c919642c7 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0X4-01A-11R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11R-A108-13 f37d4ffc-c08a-4a5c-9f8c-3d8c919642c7 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0X4-01A-11R-A108-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11R-A109-07 3d3d2beb-8c6f-45d0-bde3-12a68dbd5317 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11R-A109-07 3d3d2beb-8c6f-45d0-bde3-12a68dbd5317 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012688_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11R-A109-07 3d3d2beb-8c6f-45d0-bde3-12a68dbd5317 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012688_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11R-A109-07 3d3d2beb-8c6f-45d0-bde3-12a68dbd5317 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012688_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11R-A109-07 3d3d2beb-8c6f-45d0-bde3-12a68dbd5317 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_826651.TCGA-B6-A0X4-01A-11R-A109-07.110913_UNC14-SN744_0165_BD0DCHABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11R-A109-07 3d3d2beb-8c6f-45d0-bde3-12a68dbd5317 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_826927.TCGA-B6-A0X4-01A-11R-A109-07.110913_UNC14-SN744_0165_BD0DCHABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11R-A109-07 3d3d2beb-8c6f-45d0-bde3-12a68dbd5317 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_827129.TCGA-B6-A0X4-01A-11R-A109-07.110913_UNC14-SN744_0165_BD0DCHABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-01A TCGA-B6-A0X4-01A-11X-A10H-09 b67188f4-dc6b-4bf0-a163-ac3eeb46e7c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-10A TCGA-B6-A0X4-10A-01D-A106-02 ab0347c3-ae35-4484-88a5-e545b27f5691 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-10A TCGA-B6-A0X4-10A-01D-A107-01 354de476-2d43-477f-9316-9fa78c32cb99 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-10A TCGA-B6-A0X4-10A-01D-A107-01 354de476-2d43-477f-9316-9fa78c32cb99 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B04_731082.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-B6-A0X4 TCGA-B6-A0X4-10A TCGA-B6-A0X4-10A-01D-A107-01 354de476-2d43-477f-9316-9fa78c32cb99 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B04_731082.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-10A TCGA-B6-A0X4-10A-01D-A107-01 354de476-2d43-477f-9316-9fa78c32cb99 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B04_731082.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-10A TCGA-B6-A0X4-10A-01D-A107-01 354de476-2d43-477f-9316-9fa78c32cb99 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B04_731082.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-10A TCGA-B6-A0X4-10A-01D-A107-01 354de476-2d43-477f-9316-9fa78c32cb99 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B04_731082.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-10A TCGA-B6-A0X4-10A-01D-A107-01 354de476-2d43-477f-9316-9fa78c32cb99 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B04_731082.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-10A TCGA-B6-A0X4-10A-01D-A107-01 354de476-2d43-477f-9316-9fa78c32cb99 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B04_731082.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-10A TCGA-B6-A0X4-10A-01D-A107-01 354de476-2d43-477f-9316-9fa78c32cb99 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B04_731082.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-10A TCGA-B6-A0X4-10A-01D-A10G-09 082a4db7-4d3f-4e2f-865f-f322b7b8da7a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-10A TCGA-B6-A0X4-10A-01D-A10G-09 082a4db7-4d3f-4e2f-865f-f322b7b8da7a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0X4 TCGA-B6-A0X4-10A TCGA-B6-A0X4-10A-01X-A10H-09 a9252590-6d9e-42b7-b084-a5acbfe15304 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21D-A106-02 7dd63e25-dbc2-4723-9da6-497b3e24e41e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21D-A107-01 b8269119-af11-4653-bab9-fb56da542fab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21D-A107-01 b8269119-af11-4653-bab9-fb56da542fab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D08_730998.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21D-A107-01 b8269119-af11-4653-bab9-fb56da542fab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D08_730998.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21D-A107-01 b8269119-af11-4653-bab9-fb56da542fab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D08_730998.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21D-A107-01 b8269119-af11-4653-bab9-fb56da542fab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D08_730998.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21D-A107-01 b8269119-af11-4653-bab9-fb56da542fab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D08_730998.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21D-A107-01 b8269119-af11-4653-bab9-fb56da542fab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D08_730998.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21D-A107-01 b8269119-af11-4653-bab9-fb56da542fab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D08_730998.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21D-A107-01 b8269119-af11-4653-bab9-fb56da542fab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_D08_730998.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21D-A10A-05 63fff7da-849e-4a0a-bba8-12093aab59d9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21D-A10A-05 63fff7da-849e-4a0a-bba8-12093aab59d9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486025_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21D-A10A-05 63fff7da-849e-4a0a-bba8-12093aab59d9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486025_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21D-A10A-05 63fff7da-849e-4a0a-bba8-12093aab59d9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-B6-A0X5-01A-21D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21D-A10A-05 63fff7da-849e-4a0a-bba8-12093aab59d9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-B6-A0X5-01A-21D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21D-A10G-09 da42f10b-d515-4678-a038-ed9c92a8b56b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21D-A10G-09 da42f10b-d515-4678-a038-ed9c92a8b56b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21D-A10G-09 da42f10b-d515-4678-a038-ed9c92a8b56b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21R-A108-13 a75fedb5-6a4c-41b5-833a-a55d708c93aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21R-A108-13 a75fedb5-6a4c-41b5-833a-a55d708c93aa miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0X5-01A-21R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21R-A108-13 a75fedb5-6a4c-41b5-833a-a55d708c93aa miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0X5-01A-21R-A108-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21R-A109-07 d4d04af8-9c60-4d14-90a2-c2b211e20092 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21R-A109-07 d4d04af8-9c60-4d14-90a2-c2b211e20092 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012305_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21R-A109-07 d4d04af8-9c60-4d14-90a2-c2b211e20092 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012305_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21R-A109-07 d4d04af8-9c60-4d14-90a2-c2b211e20092 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012305_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21R-A109-07 d4d04af8-9c60-4d14-90a2-c2b211e20092 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_826877.TCGA-B6-A0X5-01A-21R-A109-07.110913_UNC14-SN744_0165_BD0DCHABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21R-A109-07 d4d04af8-9c60-4d14-90a2-c2b211e20092 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_826908.TCGA-B6-A0X5-01A-21R-A109-07.110913_UNC14-SN744_0165_BD0DCHABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21R-A109-07 d4d04af8-9c60-4d14-90a2-c2b211e20092 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_827065.TCGA-B6-A0X5-01A-21R-A109-07.110913_UNC14-SN744_0165_BD0DCHABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-01A TCGA-B6-A0X5-01A-21X-A10H-09 d785ad46-3012-421f-89d4-c304de305271 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-10A TCGA-B6-A0X5-10A-01D-A106-02 77922d09-19df-46e4-8ce2-c3b4327f5ed2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-10A TCGA-B6-A0X5-10A-01D-A107-01 4a67dc49-b33f-4cea-a867-66d4899c25ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-10A TCGA-B6-A0X5-10A-01D-A107-01 4a67dc49-b33f-4cea-a867-66d4899c25ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A03_730934.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-B6-A0X5 TCGA-B6-A0X5-10A TCGA-B6-A0X5-10A-01D-A107-01 4a67dc49-b33f-4cea-a867-66d4899c25ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A03_730934.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-10A TCGA-B6-A0X5-10A-01D-A107-01 4a67dc49-b33f-4cea-a867-66d4899c25ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A03_730934.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-10A TCGA-B6-A0X5-10A-01D-A107-01 4a67dc49-b33f-4cea-a867-66d4899c25ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A03_730934.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-10A TCGA-B6-A0X5-10A-01D-A107-01 4a67dc49-b33f-4cea-a867-66d4899c25ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A03_730934.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-10A TCGA-B6-A0X5-10A-01D-A107-01 4a67dc49-b33f-4cea-a867-66d4899c25ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A03_730934.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-10A TCGA-B6-A0X5-10A-01D-A107-01 4a67dc49-b33f-4cea-a867-66d4899c25ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A03_730934.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-10A TCGA-B6-A0X5-10A-01D-A107-01 4a67dc49-b33f-4cea-a867-66d4899c25ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A03_730934.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-10A TCGA-B6-A0X5-10A-01D-A10G-09 3ff1b637-7389-4e74-9e63-01642df895f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-10A TCGA-B6-A0X5-10A-01D-A10G-09 3ff1b637-7389-4e74-9e63-01642df895f4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-10A TCGA-B6-A0X5-10A-01D-A10G-09 3ff1b637-7389-4e74-9e63-01642df895f4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0X5 TCGA-B6-A0X5-10A TCGA-B6-A0X5-10A-01X-A10H-09 9406a7ef-4bb6-4b01-a915-aca4b2d4674a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11D-A10K-02 d649f120-4dd9-47bd-bcdf-2290e476ab40 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11D-A10L-01 8e7476bd-4f16-472b-9368-23096042b16c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11D-A10L-01 8e7476bd-4f16-472b-9368-23096042b16c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G10_734632.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11D-A10L-01 8e7476bd-4f16-472b-9368-23096042b16c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G10_734632.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11D-A10L-01 8e7476bd-4f16-472b-9368-23096042b16c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G10_734632.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11D-A10L-01 8e7476bd-4f16-472b-9368-23096042b16c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G10_734632.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11D-A10L-01 8e7476bd-4f16-472b-9368-23096042b16c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G10_734632.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11D-A10L-01 8e7476bd-4f16-472b-9368-23096042b16c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G10_734632.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11D-A10L-01 8e7476bd-4f16-472b-9368-23096042b16c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G10_734632.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11D-A10L-01 8e7476bd-4f16-472b-9368-23096042b16c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G10_734632.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11D-A10M-09 be5f93af-844a-4adb-ad89-05bfeefa58cd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11D-A10M-09 be5f93af-844a-4adb-ad89-05bfeefa58cd Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11D-A10N-05 dab3c9c6-65fb-4286-b3cd-61280221e215 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11D-A10N-05 dab3c9c6-65fb-4286-b3cd-61280221e215 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486013_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11D-A10N-05 dab3c9c6-65fb-4286-b3cd-61280221e215 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486013_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11D-A10N-05 dab3c9c6-65fb-4286-b3cd-61280221e215 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-B6-A0X7-01A-11D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11D-A10N-05 dab3c9c6-65fb-4286-b3cd-61280221e215 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-B6-A0X7-01A-11D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11D-A125-01 ff9d1c42-2cec-4d05-982d-58de2bbfbb6d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11R-A10I-13 b0aedf11-7dee-41da-bbf8-cbf9891d4337 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11R-A10I-13 b0aedf11-7dee-41da-bbf8-cbf9891d4337 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0X7-01A-11R-A10I-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11R-A10I-13 b0aedf11-7dee-41da-bbf8-cbf9891d4337 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-B6-A0X7-01A-11R-A10I-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11R-A10J-07 b5ec5184-90d6-4b74-b08c-e39af59bc807 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11R-A10J-07 b5ec5184-90d6-4b74-b08c-e39af59bc807 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012730_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11R-A10J-07 b5ec5184-90d6-4b74-b08c-e39af59bc807 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012730_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11R-A10J-07 b5ec5184-90d6-4b74-b08c-e39af59bc807 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012730_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11R-A10J-07 b5ec5184-90d6-4b74-b08c-e39af59bc807 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442721.TCGA-B6-A0X7-01A-11R-A10J-07.110509_UNC14-SN744_0110_AC02MVABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11R-A10J-07 b5ec5184-90d6-4b74-b08c-e39af59bc807 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442725.TCGA-B6-A0X7-01A-11R-A10J-07.110509_UNC14-SN744_0110_AC02MVABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11R-A10J-07 b5ec5184-90d6-4b74-b08c-e39af59bc807 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442748.TCGA-B6-A0X7-01A-11R-A10J-07.110509_UNC14-SN744_0110_AC02MVABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-01A TCGA-B6-A0X7-01A-11W-A124-09 d3ff9f3e-7c01-41be-88de-c31883a1f3c7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-10A TCGA-B6-A0X7-10A-01D-A10K-02 df5f7998-e53c-4dfa-8ce5-5159a9c96d97 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-10A TCGA-B6-A0X7-10A-01D-A10L-01 8a2fd399-a3f1-4edf-8edf-c90d16968365 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.seg.data.txt'. TCGA-B6-A0X7 TCGA-B6-A0X7-10A TCGA-B6-A0X7-10A-01D-A10L-01 8a2fd399-a3f1-4edf-8edf-c90d16968365 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.seg.data.txt'. TCGA-B6-A0X7 TCGA-B6-A0X7-10A TCGA-B6-A0X7-10A-01D-A10L-01 8a2fd399-a3f1-4edf-8edf-c90d16968365 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.seg.data.txt'. TCGA-B6-A0X7 TCGA-B6-A0X7-10A TCGA-B6-A0X7-10A-01D-A10L-01 8a2fd399-a3f1-4edf-8edf-c90d16968365 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.seg.data.txt'. TCGA-B6-A0X7 TCGA-B6-A0X7-10A TCGA-B6-A0X7-10A-01D-A10L-01 8a2fd399-a3f1-4edf-8edf-c90d16968365 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.seg.data.txt'. TCGA-B6-A0X7 TCGA-B6-A0X7-10A TCGA-B6-A0X7-10A-01D-A10L-01 8a2fd399-a3f1-4edf-8edf-c90d16968365 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.seg.data.txt'. TCGA-B6-A0X7 TCGA-B6-A0X7-10A TCGA-B6-A0X7-10A-01D-A10L-01 8a2fd399-a3f1-4edf-8edf-c90d16968365 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.seg.data.txt'. TCGA-B6-A0X7 TCGA-B6-A0X7-10A TCGA-B6-A0X7-10A-01D-A10L-01 8a2fd399-a3f1-4edf-8edf-c90d16968365 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G11_734692.seg.data.txt'. TCGA-B6-A0X7 TCGA-B6-A0X7-10A TCGA-B6-A0X7-10A-01D-A10M-09 f50ae895-84cf-4ce7-9663-167b5b951516 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-10A TCGA-B6-A0X7-10A-01D-A10M-09 f50ae895-84cf-4ce7-9663-167b5b951516 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-B6-A0X7 TCGA-B6-A0X7-10A TCGA-B6-A0X7-10A-01W-A124-09 3fd04fa8-a822-45d2-8beb-d57d3a1b27f0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-B6-A0X7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01A TCGA-B6-A1KC-01A-11D-A13I-02 b31d6640-b311-49a7-bfd5-3075a0f55933 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-B6-A1KC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01A TCGA-B6-A1KC-01A-11D-A13J-01 89a93ef7-73a7-451f-9c83-251b827f02c6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-B6-A1KC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01A TCGA-B6-A1KC-01A-11D-A13J-01 89a93ef7-73a7-451f-9c83-251b827f02c6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A07_771954.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-B6-A1KC TCGA-B6-A1KC-01A TCGA-B6-A1KC-01A-11D-A13J-01 89a93ef7-73a7-451f-9c83-251b827f02c6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A07_771954.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-B6-A1KC TCGA-B6-A1KC-01A TCGA-B6-A1KC-01A-11D-A13J-01 89a93ef7-73a7-451f-9c83-251b827f02c6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A07_771954.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-B6-A1KC TCGA-B6-A1KC-01A TCGA-B6-A1KC-01A-11D-A13J-01 89a93ef7-73a7-451f-9c83-251b827f02c6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A07_771954.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-B6-A1KC TCGA-B6-A1KC-01A TCGA-B6-A1KC-01A-11D-A13J-01 89a93ef7-73a7-451f-9c83-251b827f02c6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A07_771954.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-B6-A1KC TCGA-B6-A1KC-01A TCGA-B6-A1KC-01A-11D-A13J-01 89a93ef7-73a7-451f-9c83-251b827f02c6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A07_771954.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-B6-A1KC TCGA-B6-A1KC-01A TCGA-B6-A1KC-01A-11D-A13J-01 89a93ef7-73a7-451f-9c83-251b827f02c6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A07_771954.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-B6-A1KC TCGA-B6-A1KC-01A TCGA-B6-A1KC-01A-11D-A13J-01 89a93ef7-73a7-451f-9c83-251b827f02c6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A07_771954.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01A TCGA-B6-A1KC-01A-11D-A13K-05 bd7cdcd4-59c0-4d7f-9bf9-0d8db021cc73 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-B6-A1KC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01A TCGA-B6-A1KC-01A-11D-A13L-09 34e0baa5-86ed-44b6-812c-18e99d1917e1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-B6-A1KC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01A TCGA-B6-A1KC-01A-11R-A13P-13 a80486d2-4520-4103-9768-9c145fcd549e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-B6-A1KC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01A TCGA-B6-A1KC-01A-11R-A13P-13 a80486d2-4520-4103-9768-9c145fcd549e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-B6-A1KC-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01A TCGA-B6-A1KC-01A-11R-A13P-13 a80486d2-4520-4103-9768-9c145fcd549e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-B6-A1KC-01A-11R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01A TCGA-B6-A1KC-01A-11R-A13Q-07 d9c21c95-9ca3-4ebe-80ab-8f3fd4166c31 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-B6-A1KC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01A TCGA-B6-A1KC-01A-11W-A14Q-09 d5d6b8fe-a703-4aa2-b29a-5a6a0b85a3aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-B6-A1KC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01B TCGA-B6-A1KC-01B-11D-A158-02 171c222b-a147-4e9f-aeeb-8b51f3dc10ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-B6-A1KC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01B TCGA-B6-A1KC-01B-11D-A159-09 fc3e822f-150d-47a7-a346-10919b42aa8c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-B6-A1KC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01B TCGA-B6-A1KC-01B-11D-A160-01 63c1bf52-78e7-48aa-ba7c-acf89b20b1e0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-B6-A1KC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01B TCGA-B6-A1KC-01B-11D-A160-01 63c1bf52-78e7-48aa-ba7c-acf89b20b1e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F05_787566.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-B6-A1KC TCGA-B6-A1KC-01B TCGA-B6-A1KC-01B-11D-A160-01 63c1bf52-78e7-48aa-ba7c-acf89b20b1e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F05_787566.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-B6-A1KC TCGA-B6-A1KC-01B TCGA-B6-A1KC-01B-11D-A160-01 63c1bf52-78e7-48aa-ba7c-acf89b20b1e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F05_787566.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-B6-A1KC TCGA-B6-A1KC-01B TCGA-B6-A1KC-01B-11D-A160-01 63c1bf52-78e7-48aa-ba7c-acf89b20b1e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F05_787566.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-B6-A1KC TCGA-B6-A1KC-01B TCGA-B6-A1KC-01B-11D-A160-01 63c1bf52-78e7-48aa-ba7c-acf89b20b1e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F05_787566.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-B6-A1KC TCGA-B6-A1KC-01B TCGA-B6-A1KC-01B-11D-A160-01 63c1bf52-78e7-48aa-ba7c-acf89b20b1e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F05_787566.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-B6-A1KC TCGA-B6-A1KC-01B TCGA-B6-A1KC-01B-11D-A160-01 63c1bf52-78e7-48aa-ba7c-acf89b20b1e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F05_787566.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-B6-A1KC TCGA-B6-A1KC-01B TCGA-B6-A1KC-01B-11D-A160-01 63c1bf52-78e7-48aa-ba7c-acf89b20b1e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F05_787566.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01B TCGA-B6-A1KC-01B-11D-A161-05 ef33a500-51db-46ba-bd91-84dc598a3ca8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-B6-A1KC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01B TCGA-B6-A1KC-01B-11D-A161-05 ef33a500-51db-46ba-bd91-84dc598a3ca8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6042324006_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01B TCGA-B6-A1KC-01B-11D-A161-05 ef33a500-51db-46ba-bd91-84dc598a3ca8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6042324006_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01B TCGA-B6-A1KC-01B-11D-A161-05 ef33a500-51db-46ba-bd91-84dc598a3ca8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-B6-A1KC-01B-11D-A161-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01B TCGA-B6-A1KC-01B-11D-A161-05 ef33a500-51db-46ba-bd91-84dc598a3ca8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-B6-A1KC-01B-11D-A161-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01B TCGA-B6-A1KC-01B-11R-A156-13 17d015b8-b3fb-4957-87ea-791598c19bc6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-B6-A1KC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01B TCGA-B6-A1KC-01B-11R-A156-13 17d015b8-b3fb-4957-87ea-791598c19bc6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-B6-A1KC-01B-11R-A156-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01B TCGA-B6-A1KC-01B-11R-A156-13 17d015b8-b3fb-4957-87ea-791598c19bc6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-B6-A1KC-01B-11R-A156-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01B TCGA-B6-A1KC-01B-11R-A157-07 fe5e5b08-d5c0-4165-ae92-bec6a1d98e60 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-B6-A1KC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01B TCGA-B6-A1KC-01B-11R-A157-07 fe5e5b08-d5c0-4165-ae92-bec6a1d98e60 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_568805.TCGA-B6-A1KC-01B-11R-A157-07.110926_UNC12-SN629_0143_AD0DY7ABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01B TCGA-B6-A1KC-01B-11R-A157-07 fe5e5b08-d5c0-4165-ae92-bec6a1d98e60 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_568816.TCGA-B6-A1KC-01B-11R-A157-07.110926_UNC12-SN629_0143_AD0DY7ABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01B TCGA-B6-A1KC-01B-11R-A157-07 fe5e5b08-d5c0-4165-ae92-bec6a1d98e60 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_568860.TCGA-B6-A1KC-01B-11R-A157-07.110926_UNC12-SN629_0143_AD0DY7ABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-01B TCGA-B6-A1KC-01B-11W-A16L-09 c7887dba-c296-4d95-b965-c762acda00cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-B6-A1KC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-10A TCGA-B6-A1KC-10A-01D-A13M-02 2fa51a32-2e36-4fbf-bfa5-6f9648b74048 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-B6-A1KC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-10A TCGA-B6-A1KC-10A-01D-A13N-01 a3787138-8423-4637-8f57-f6f388ce186a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-B6-A1KC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-B6-A1KC TCGA-B6-A1KC-10A TCGA-B6-A1KC-10A-01D-A13N-01 a3787138-8423-4637-8f57-f6f388ce186a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F11_771936.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-B6-A1KC TCGA-B6-A1KC-10A TCGA-B6-A1KC-10A-01D-A13N-01 a3787138-8423-4637-8f57-f6f388ce186a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F11_771936.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-B6-A1KC TCGA-B6-A1KC-10A TCGA-B6-A1KC-10A-01D-A13N-01 a3787138-8423-4637-8f57-f6f388ce186a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F11_771936.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-B6-A1KC TCGA-B6-A1KC-10A TCGA-B6-A1KC-10A-01D-A13N-01 a3787138-8423-4637-8f57-f6f388ce186a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F11_771936.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-B6-A1KC TCGA-B6-A1KC-10A TCGA-B6-A1KC-10A-01D-A13N-01 a3787138-8423-4637-8f57-f6f388ce186a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F11_771936.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-B6-A1KC TCGA-B6-A1KC-10A TCGA-B6-A1KC-10A-01D-A13N-01 a3787138-8423-4637-8f57-f6f388ce186a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F11_771936.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-B6-A1KC TCGA-B6-A1KC-10A TCGA-B6-A1KC-10A-01D-A13N-01 a3787138-8423-4637-8f57-f6f388ce186a SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D03_747922.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-01A TCGA-BH-A0AU-01A-11D-A12N-01 9687f34c-0460-4fef-b5ba-d7ec23013f4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D03_747922.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-01A TCGA-BH-A0AU-01A-11D-A12N-01 9687f34c-0460-4fef-b5ba-d7ec23013f4d SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D03_747922.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-01A TCGA-BH-A0AU-01A-11D-A12N-01 9687f34c-0460-4fef-b5ba-d7ec23013f4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D03_747922.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-01A TCGA-BH-A0AU-01A-11D-A12N-01 9687f34c-0460-4fef-b5ba-d7ec23013f4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D03_747922.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-01A TCGA-BH-A0AU-01A-11D-A12Q-09 d06209b8-8aba-44d8-b94a-990861c2324a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-01A TCGA-BH-A0AU-01A-11D-A12Q-09 d06209b8-8aba-44d8-b94a-990861c2324a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-01A TCGA-BH-A0AU-01A-11D-A12R-05 9a78a0c0-324d-4059-95de-2f243a4c7a95 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-01A TCGA-BH-A0AU-01A-11D-A12R-05 9a78a0c0-324d-4059-95de-2f243a4c7a95 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324030_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-01A TCGA-BH-A0AU-01A-11D-A12R-05 9a78a0c0-324d-4059-95de-2f243a4c7a95 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324030_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-01A TCGA-BH-A0AU-01A-11D-A12R-05 9a78a0c0-324d-4059-95de-2f243a4c7a95 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-BH-A0AU-01A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-01A TCGA-BH-A0AU-01A-11D-A12R-05 9a78a0c0-324d-4059-95de-2f243a4c7a95 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-BH-A0AU-01A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-01A TCGA-BH-A0AU-01A-11R-A12O-13 ba57d4eb-ba44-4ba6-a684-701d0de9d04e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-01A TCGA-BH-A0AU-01A-11R-A12O-13 ba57d4eb-ba44-4ba6-a684-701d0de9d04e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0AU-01A-11R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-01A TCGA-BH-A0AU-01A-11R-A12O-13 ba57d4eb-ba44-4ba6-a684-701d0de9d04e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0AU-01A-11R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-01A TCGA-BH-A0AU-01A-11R-A12P-07 d448433c-3c4b-4371-b749-f96af8da2237 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-01A TCGA-BH-A0AU-01A-11R-A12P-07 d448433c-3c4b-4371-b749-f96af8da2237 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012953_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-01A TCGA-BH-A0AU-01A-11R-A12P-07 d448433c-3c4b-4371-b749-f96af8da2237 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012953_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-01A TCGA-BH-A0AU-01A-11R-A12P-07 d448433c-3c4b-4371-b749-f96af8da2237 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012953_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-01A TCGA-BH-A0AU-01A-11R-A12P-07 d448433c-3c4b-4371-b749-f96af8da2237 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_440771.TCGA-BH-A0AU-01A-11R-A12P-07.110706_UNC12-SN629_0106_AC043GABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-01A TCGA-BH-A0AU-01A-11R-A12P-07 d448433c-3c4b-4371-b749-f96af8da2237 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_440808.TCGA-BH-A0AU-01A-11R-A12P-07.110706_UNC12-SN629_0106_AC043GABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-01A TCGA-BH-A0AU-01A-11R-A12P-07 d448433c-3c4b-4371-b749-f96af8da2237 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_440862.TCGA-BH-A0AU-01A-11R-A12P-07.110706_UNC12-SN629_0106_AC043GABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-01A TCGA-BH-A0AU-01A-11W-A14O-09 c635dd5f-496c-4161-8c85-54b139647d7b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-11A TCGA-BH-A0AU-11A-11D-A12M-02 91765fc6-d652-4645-900a-33c7d17b8e90 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-11A TCGA-BH-A0AU-11A-11D-A12N-01 ba3f3337-b364-49bb-967e-fed25a6b1928 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-11A TCGA-BH-A0AU-11A-11D-A12N-01 ba3f3337-b364-49bb-967e-fed25a6b1928 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A12_747988.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0AU TCGA-BH-A0AU-11A TCGA-BH-A0AU-11A-11D-A12N-01 ba3f3337-b364-49bb-967e-fed25a6b1928 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A12_747988.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-11A TCGA-BH-A0AU-11A-11D-A12N-01 ba3f3337-b364-49bb-967e-fed25a6b1928 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A12_747988.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-11A TCGA-BH-A0AU-11A-11D-A12N-01 ba3f3337-b364-49bb-967e-fed25a6b1928 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A12_747988.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-11A TCGA-BH-A0AU-11A-11D-A12N-01 ba3f3337-b364-49bb-967e-fed25a6b1928 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A12_747988.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-11A TCGA-BH-A0AU-11A-11D-A12N-01 ba3f3337-b364-49bb-967e-fed25a6b1928 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A12_747988.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-11A TCGA-BH-A0AU-11A-11D-A12N-01 ba3f3337-b364-49bb-967e-fed25a6b1928 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A12_747988.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-11A TCGA-BH-A0AU-11A-11D-A12N-01 ba3f3337-b364-49bb-967e-fed25a6b1928 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A12_747988.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-11A TCGA-BH-A0AU-11A-11D-A12Q-09 9b7a36f8-d6c8-49f5-bfaf-26661bac3be3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-11A TCGA-BH-A0AU-11A-11D-A12Q-09 9b7a36f8-d6c8-49f5-bfaf-26661bac3be3 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-11A TCGA-BH-A0AU-11A-11D-A12R-05 d1c5ed8c-9127-4a99-9b6a-f697b2257159 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-11A TCGA-BH-A0AU-11A-11D-A12R-05 d1c5ed8c-9127-4a99-9b6a-f697b2257159 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324072_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-11A TCGA-BH-A0AU-11A-11D-A12R-05 d1c5ed8c-9127-4a99-9b6a-f697b2257159 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324072_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-11A TCGA-BH-A0AU-11A-11D-A12R-05 d1c5ed8c-9127-4a99-9b6a-f697b2257159 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-BH-A0AU-11A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-11A TCGA-BH-A0AU-11A-11D-A12R-05 d1c5ed8c-9127-4a99-9b6a-f697b2257159 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-BH-A0AU-11A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-11A TCGA-BH-A0AU-11A-11R-A12O-13 ab55d3ca-76ce-4ed3-8b95-035c51916bf6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-11A TCGA-BH-A0AU-11A-11R-A12O-13 ab55d3ca-76ce-4ed3-8b95-035c51916bf6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0AU-11A-11R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-11A TCGA-BH-A0AU-11A-11R-A12O-13 ab55d3ca-76ce-4ed3-8b95-035c51916bf6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0AU-11A-11R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-11A TCGA-BH-A0AU-11A-11R-A12P-07 eb7e6bfc-79ad-4674-9d58-2cbad8c65658 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-11A TCGA-BH-A0AU-11A-11R-A12P-07 eb7e6bfc-79ad-4674-9d58-2cbad8c65658 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013052_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-11A TCGA-BH-A0AU-11A-11R-A12P-07 eb7e6bfc-79ad-4674-9d58-2cbad8c65658 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013052_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-11A TCGA-BH-A0AU-11A-11R-A12P-07 eb7e6bfc-79ad-4674-9d58-2cbad8c65658 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013052_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0AU TCGA-BH-A0AU-11A TCGA-BH-A0AU-11A-11W-A14O-09 5942f949-32bc-4727-a3ff-3de990bc3726 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31D-A10X-02 e38890ab-fee5-4167-ab06-0ed32e3489d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31D-A10Y-09 9032b7fe-e38a-4641-a45e-67041668adc4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31D-A10Y-09 9032b7fe-e38a-4641-a45e-67041668adc4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31D-A111-01 fe110a00-ddf8-468a-966e-4823df9cbe40 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31D-A111-01 fe110a00-ddf8-468a-966e-4823df9cbe40 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A07_735116.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31D-A111-01 fe110a00-ddf8-468a-966e-4823df9cbe40 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A07_735116.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31D-A111-01 fe110a00-ddf8-468a-966e-4823df9cbe40 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A07_735116.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31D-A111-01 fe110a00-ddf8-468a-966e-4823df9cbe40 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A07_735116.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31D-A111-01 fe110a00-ddf8-468a-966e-4823df9cbe40 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A07_735116.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31D-A111-01 fe110a00-ddf8-468a-966e-4823df9cbe40 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A07_735116.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31D-A111-01 fe110a00-ddf8-468a-966e-4823df9cbe40 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A07_735116.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31D-A111-01 fe110a00-ddf8-468a-966e-4823df9cbe40 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A07_735116.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31D-A112-05 7f5cb5da-7f59-45a5-a339-754b2746aea5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31D-A112-05 7f5cb5da-7f59-45a5-a339-754b2746aea5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-BH-A0AV-01A-31D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31D-A112-05 7f5cb5da-7f59-45a5-a339-754b2746aea5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-BH-A0AV-01A-31D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31D-A112-05 7f5cb5da-7f59-45a5-a339-754b2746aea5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-BH-A0AV-01A-31D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31R-A114-13 fcb42007-3555-4410-b4f7-5a6ac115515a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31R-A114-13 fcb42007-3555-4410-b4f7-5a6ac115515a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0AV-01A-31R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31R-A114-13 fcb42007-3555-4410-b4f7-5a6ac115515a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0AV-01A-31R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31R-A115-07 afe0fbfe-18e0-4b80-a44c-7abe3c7e5c93 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31R-A115-07 afe0fbfe-18e0-4b80-a44c-7abe3c7e5c93 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012795_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31R-A115-07 afe0fbfe-18e0-4b80-a44c-7abe3c7e5c93 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012795_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31R-A115-07 afe0fbfe-18e0-4b80-a44c-7abe3c7e5c93 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012795_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31R-A115-07 afe0fbfe-18e0-4b80-a44c-7abe3c7e5c93 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_410771.TCGA-BH-A0AV-01A-31R-A115-07.110607_UNC14-SN744_0125_BD0CRWABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31R-A115-07 afe0fbfe-18e0-4b80-a44c-7abe3c7e5c93 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_410779.TCGA-BH-A0AV-01A-31R-A115-07.110607_UNC14-SN744_0125_BD0CRWABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31R-A115-07 afe0fbfe-18e0-4b80-a44c-7abe3c7e5c93 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_410791.TCGA-BH-A0AV-01A-31R-A115-07.110607_UNC14-SN744_0125_BD0CRWABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-01A TCGA-BH-A0AV-01A-31W-A12T-09 f9c9896e-a3fb-4601-8a9d-386d81753e96 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-10A TCGA-BH-A0AV-10A-01D-A10Z-02 d95ba0a9-51eb-4ca5-9b16-8789af732d57 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-10A TCGA-BH-A0AV-10A-01D-A110-09 3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-10A TCGA-BH-A0AV-10A-01D-A110-09 3ab50b2e-8b0c-4ccd-b6bf-d577f5e9fc94 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-10A TCGA-BH-A0AV-10A-01D-A113-01 b3c5d579-b40d-4c72-afb4-eb2550f26dc5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-10A TCGA-BH-A0AV-10A-01D-A113-01 b3c5d579-b40d-4c72-afb4-eb2550f26dc5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C04_735096.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0AV TCGA-BH-A0AV-10A TCGA-BH-A0AV-10A-01D-A113-01 b3c5d579-b40d-4c72-afb4-eb2550f26dc5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C04_735096.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-10A TCGA-BH-A0AV-10A-01D-A113-01 b3c5d579-b40d-4c72-afb4-eb2550f26dc5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C04_735096.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-10A TCGA-BH-A0AV-10A-01D-A113-01 b3c5d579-b40d-4c72-afb4-eb2550f26dc5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C04_735096.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-10A TCGA-BH-A0AV-10A-01D-A113-01 b3c5d579-b40d-4c72-afb4-eb2550f26dc5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C04_735096.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-10A TCGA-BH-A0AV-10A-01D-A113-01 b3c5d579-b40d-4c72-afb4-eb2550f26dc5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C04_735096.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-10A TCGA-BH-A0AV-10A-01D-A113-01 b3c5d579-b40d-4c72-afb4-eb2550f26dc5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C04_735096.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-10A TCGA-BH-A0AV-10A-01D-A113-01 b3c5d579-b40d-4c72-afb4-eb2550f26dc5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C04_735096.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0AV TCGA-BH-A0AV-10A TCGA-BH-A0AV-10A-01W-A12U-09 a0e1a667-d0e9-4e0b-befc-e97119454205 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11D-A058-05 109dda89-ca44-4eff-bf3e-7dabdfdee57e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11D-A059-01 34c5238e-d4ee-424c-976c-0f9bbfb1e0bc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11D-A059-01 34c5238e-d4ee-424c-976c-0f9bbfb1e0bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F10_697194.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11D-A059-01 34c5238e-d4ee-424c-976c-0f9bbfb1e0bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F10_697194.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11D-A059-01 34c5238e-d4ee-424c-976c-0f9bbfb1e0bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F10_697194.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11D-A059-01 34c5238e-d4ee-424c-976c-0f9bbfb1e0bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F10_697194.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11D-A059-01 34c5238e-d4ee-424c-976c-0f9bbfb1e0bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F10_697194.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11D-A059-01 34c5238e-d4ee-424c-976c-0f9bbfb1e0bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F10_697194.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11D-A059-01 34c5238e-d4ee-424c-976c-0f9bbfb1e0bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F10_697194.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11D-A059-01 34c5238e-d4ee-424c-976c-0f9bbfb1e0bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F10_697194.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11D-A060-02 a008e1df-a940-4219-bc93-27e47d2223ba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11D-A074-08 9a27c055-127f-4f4e-a16b-356150c5cbd9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11D-A075-09 e65371be-39bb-41dd-b84a-53dded589427 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11D-A10P-05 ba9cdb67-0dfd-4915-b3c4-f2d198befd45 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11D-A10P-05 ba9cdb67-0dfd-4915-b3c4-f2d198befd45 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486019_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11D-A10P-05 ba9cdb67-0dfd-4915-b3c4-f2d198befd45 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486019_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11D-A10P-05 ba9cdb67-0dfd-4915-b3c4-f2d198befd45 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0AW-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11D-A10P-05 ba9cdb67-0dfd-4915-b3c4-f2d198befd45 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0AW-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11R-A056-07 8b615995-6210-4dd5-bf58-cf8a109d7648 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11R-A056-07 8b615995-6210-4dd5-bf58-cf8a109d7648 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012484_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11R-A056-07 8b615995-6210-4dd5-bf58-cf8a109d7648 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012484_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11R-A056-07 8b615995-6210-4dd5-bf58-cf8a109d7648 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012484_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11R-A056-07 8b615995-6210-4dd5-bf58-cf8a109d7648 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480862.TCGA-BH-A0AW-01A-11R-A056-07.110318_SN744_0080_BB042NABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11R-A056-07 8b615995-6210-4dd5-bf58-cf8a109d7648 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480886.TCGA-BH-A0AW-01A-11R-A056-07.110318_SN744_0080_BB042NABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11R-A056-07 8b615995-6210-4dd5-bf58-cf8a109d7648 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480947.TCGA-BH-A0AW-01A-11R-A056-07.110318_SN744_0080_BB042NABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11R-A057-13 a1e4cd51-e2a4-4274-a6e9-ed09bdd38c1b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11R-A057-13 a1e4cd51-e2a4-4274-a6e9-ed09bdd38c1b miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0AW-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11R-A057-13 a1e4cd51-e2a4-4274-a6e9-ed09bdd38c1b miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0AW-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11W-A070-08 a395a5fb-a3a3-449c-9344-6cf3fde2ba4c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11W-A071-09 82057159-dd32-49fd-9ee7-82b4668f39c3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11W-A071-09 82057159-dd32-49fd-9ee7-82b4668f39c3 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11X-A072-08 16984178-7d66-4ffe-84d6-e22d4a2f1038 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-01A TCGA-BH-A0AW-01A-11X-A073-09 ac2a958e-3743-47bb-a2a7-70a3d8685c1f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-10A TCGA-BH-A0AW-10A-01D-A059-01 8ac159eb-d69d-4a80-baef-fddffb5febd4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-10A TCGA-BH-A0AW-10A-01D-A059-01 8ac159eb-d69d-4a80-baef-fddffb5febd4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B09_697178.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0AW TCGA-BH-A0AW-10A TCGA-BH-A0AW-10A-01D-A059-01 8ac159eb-d69d-4a80-baef-fddffb5febd4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B09_697178.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-10A TCGA-BH-A0AW-10A-01D-A059-01 8ac159eb-d69d-4a80-baef-fddffb5febd4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B09_697178.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-10A TCGA-BH-A0AW-10A-01D-A059-01 8ac159eb-d69d-4a80-baef-fddffb5febd4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B09_697178.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-10A TCGA-BH-A0AW-10A-01D-A059-01 8ac159eb-d69d-4a80-baef-fddffb5febd4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B09_697178.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-10A TCGA-BH-A0AW-10A-01D-A059-01 8ac159eb-d69d-4a80-baef-fddffb5febd4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B09_697178.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-10A TCGA-BH-A0AW-10A-01D-A059-01 8ac159eb-d69d-4a80-baef-fddffb5febd4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B09_697178.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-10A TCGA-BH-A0AW-10A-01D-A059-01 8ac159eb-d69d-4a80-baef-fddffb5febd4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B09_697178.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-10A TCGA-BH-A0AW-10A-01D-A060-02 7500c69f-56fc-4547-8819-44d2dfb518f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-10A TCGA-BH-A0AW-10A-01D-A074-08 0236da6e-fcb5-4ba1-a240-7faad5291525 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-10A TCGA-BH-A0AW-10A-01D-A075-09 779e24c4-b470-429d-98e1-65b0a896fc3f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-10A TCGA-BH-A0AW-10A-01W-A070-08 d055e78f-9070-4e40-aeb2-979ba370f294 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-10A TCGA-BH-A0AW-10A-01W-A071-09 959f61e0-33ba-4464-a04a-efd0372eedb5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-10A TCGA-BH-A0AW-10A-01W-A071-09 959f61e0-33ba-4464-a04a-efd0372eedb5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-10A TCGA-BH-A0AW-10A-01X-A072-08 8bdd0a4c-967b-4895-bb89-f7c53310dfce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0AW TCGA-BH-A0AW-10A TCGA-BH-A0AW-10A-01X-A073-09 82a19eee-cb1d-4a8e-8cd7-02b20975f1dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21D-A00Y-05 7baeebba-b08b-4f22-9d5a-669d397e30bf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21D-A00Y-05 7baeebba-b08b-4f22-9d5a-669d397e30bf DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-BH-A0AY-01A-21D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21D-A00Y-05 7baeebba-b08b-4f22-9d5a-669d397e30bf DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-BH-A0AY-01A-21D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21D-A00Y-05 7baeebba-b08b-4f22-9d5a-669d397e30bf DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-BH-A0AY-01A-21D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21D-A011-01 4fd27ab7-1bec-4d0c-a8e2-9ab804d0a5eb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21D-A011-01 4fd27ab7-1bec-4d0c-a8e2-9ab804d0a5eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E05_628520.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21D-A011-01 4fd27ab7-1bec-4d0c-a8e2-9ab804d0a5eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E05_628520.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21D-A011-01 4fd27ab7-1bec-4d0c-a8e2-9ab804d0a5eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E05_628520.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21D-A011-01 4fd27ab7-1bec-4d0c-a8e2-9ab804d0a5eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E05_628520.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21D-A011-01 4fd27ab7-1bec-4d0c-a8e2-9ab804d0a5eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E05_628520.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21D-A011-01 4fd27ab7-1bec-4d0c-a8e2-9ab804d0a5eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E05_628520.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21D-A011-01 4fd27ab7-1bec-4d0c-a8e2-9ab804d0a5eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E05_628520.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21D-A011-01 4fd27ab7-1bec-4d0c-a8e2-9ab804d0a5eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E05_628520.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21D-A015-09 d6c4290c-efd5-441f-84d6-d63f9c6f606a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21D-A016-08 c86e701b-38b2-4888-9ac7-7b39c8b178ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21D-A068-02 df091eff-224d-49d6-83c8-5ca1afb25785 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21R-A00Z-07 80817359-b0f0-4bea-ada4-b48bea37f5d2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21R-A00Z-07 80817359-b0f0-4bea-ada4-b48bea37f5d2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011843_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21R-A00Z-07 80817359-b0f0-4bea-ada4-b48bea37f5d2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011843_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21R-A00Z-07 80817359-b0f0-4bea-ada4-b48bea37f5d2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011843_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21R-A00Z-07 80817359-b0f0-4bea-ada4-b48bea37f5d2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_608530.TCGA-BH-A0AY-01A-21R-A00Z-07.110225_SN254_0195_A81LH6ABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21R-A00Z-07 80817359-b0f0-4bea-ada4-b48bea37f5d2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_608539.TCGA-BH-A0AY-01A-21R-A00Z-07.110225_SN254_0195_A81LH6ABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21R-A00Z-07 80817359-b0f0-4bea-ada4-b48bea37f5d2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_608598.TCGA-BH-A0AY-01A-21R-A00Z-07.110225_SN254_0195_A81LH6ABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21R-A010-13 d5c5a958-9d25-4405-bedc-e5cbb27ef362 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21R-A010-13 d5c5a958-9d25-4405-bedc-e5cbb27ef362 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0AY-01A-21R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21R-A010-13 d5c5a958-9d25-4405-bedc-e5cbb27ef362 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0AY-01A-21R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21W-A019-09 16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21W-A019-09 16ae1ccf-0a1e-4a67-9cbe-d0746ee68dac Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21W-A020-08 fd63d54a-ea82-462b-bd15-7cca755b0fe7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21X-A023-09 76ccf8ef-05ba-4d98-af69-0f31a7dbfb3e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-01A TCGA-BH-A0AY-01A-21X-A024-08 f7b8bea8-a6b8-4874-ba76-6b912bd72560 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-10A TCGA-BH-A0AY-10A-01D-A012-01 f20a6aaa-d3f5-4d6b-b998-ee10b17b53d1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-10A TCGA-BH-A0AY-10A-01D-A012-01 f20a6aaa-d3f5-4d6b-b998-ee10b17b53d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F05_628558.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-BH-A0AY TCGA-BH-A0AY-10A TCGA-BH-A0AY-10A-01D-A012-01 f20a6aaa-d3f5-4d6b-b998-ee10b17b53d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F05_628558.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-10A TCGA-BH-A0AY-10A-01D-A012-01 f20a6aaa-d3f5-4d6b-b998-ee10b17b53d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F05_628558.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-10A TCGA-BH-A0AY-10A-01D-A012-01 f20a6aaa-d3f5-4d6b-b998-ee10b17b53d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F05_628558.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-10A TCGA-BH-A0AY-10A-01D-A012-01 f20a6aaa-d3f5-4d6b-b998-ee10b17b53d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F05_628558.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-10A TCGA-BH-A0AY-10A-01D-A012-01 f20a6aaa-d3f5-4d6b-b998-ee10b17b53d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F05_628558.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-10A TCGA-BH-A0AY-10A-01D-A012-01 f20a6aaa-d3f5-4d6b-b998-ee10b17b53d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F05_628558.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-10A TCGA-BH-A0AY-10A-01D-A012-01 f20a6aaa-d3f5-4d6b-b998-ee10b17b53d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_F05_628558.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-10A TCGA-BH-A0AY-10A-01D-A017-09 28cf6196-2a9a-4cc3-ad20-a97e50bac105 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-10A TCGA-BH-A0AY-10A-01D-A018-08 155dfe9b-1b03-444d-a29b-e50eb22ff447 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-10A TCGA-BH-A0AY-10A-01D-A069-02 b5884efd-7109-4aa2-8975-86300a44ac83 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-10A TCGA-BH-A0AY-10A-01W-A021-09 635d1b45-ef87-457e-9ea9-bd97f6ee70c0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-10A TCGA-BH-A0AY-10A-01W-A021-09 635d1b45-ef87-457e-9ea9-bd97f6ee70c0 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-10A TCGA-BH-A0AY-10A-01W-A022-08 8d0cb750-c678-44de-881d-b45bda596e17 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-10A TCGA-BH-A0AY-10A-01X-A025-09 2dcfa831-fabd-462e-a89f-03dc0be86713 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-10A TCGA-BH-A0AY-10A-01X-A026-08 de11f6e6-c652-43fe-99ba-3e21ad90b87e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23D-A091-02 50dec65a-9dc1-41b8-8264-9d86ff2ee6e2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23D-A092-01 786086ca-bf45-4dc7-bfbe-976d64d5eae2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23D-A092-01 786086ca-bf45-4dc7-bfbe-976d64d5eae2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G04_729748.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23D-A092-01 786086ca-bf45-4dc7-bfbe-976d64d5eae2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G04_729748.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23D-A092-01 786086ca-bf45-4dc7-bfbe-976d64d5eae2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G04_729748.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23D-A092-01 786086ca-bf45-4dc7-bfbe-976d64d5eae2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G04_729748.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23D-A092-01 786086ca-bf45-4dc7-bfbe-976d64d5eae2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G04_729748.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23D-A092-01 786086ca-bf45-4dc7-bfbe-976d64d5eae2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G04_729748.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23D-A092-01 786086ca-bf45-4dc7-bfbe-976d64d5eae2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G04_729748.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23D-A092-01 786086ca-bf45-4dc7-bfbe-976d64d5eae2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G04_729748.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23D-A093-05 1c581964-bcfd-459d-b7a2-5e670c97e063 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23D-A100-09 cdd0b187-a940-4ae0-915c-d5bd0d197609 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23D-A10Q-05 41deef8e-6209-4419-a7f7-f620dbaa66ab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23D-A10Q-05 41deef8e-6209-4419-a7f7-f620dbaa66ab DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0/6005486011_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0 47 07-NOV-11 04.04.17.697000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23D-A10Q-05 41deef8e-6209-4419-a7f7-f620dbaa66ab DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0/6005486011_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0 47 07-NOV-11 04.04.17.697000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23D-A10Q-05 41deef8e-6209-4419-a7f7-f620dbaa66ab DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.1.1.0/jhu-usc.edu_BRCA.HumanMethylation450.1.lvl-2.TCGA-BH-A0AY-11A-23D-A10Q-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.1.1.0 47 07-NOV-11 04.38.19.253000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23D-A10Q-05 41deef8e-6209-4419-a7f7-f620dbaa66ab DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.1.1.0/jhu-usc.edu_BRCA.HumanMethylation450.1.lvl-3.TCGA-BH-A0AY-11A-23D-A10Q-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.1.1.0 47 07-NOV-11 05.34.09.862000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23R-A089-07 d9c8ecc3-0e92-49e9-99e4-9976785c73a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23R-A089-07 d9c8ecc3-0e92-49e9-99e4-9976785c73a6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012635_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 47 02-NOV-10 12.30.07.283000000 AM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23R-A089-07 d9c8ecc3-0e92-49e9-99e4-9976785c73a6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012635_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 47 02-NOV-10 12.25.38.097000000 AM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23R-A089-07 d9c8ecc3-0e92-49e9-99e4-9976785c73a6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012635_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 47 02-NOV-10 12.26.20.805000000 AM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23R-A089-07 d9c8ecc3-0e92-49e9-99e4-9976785c73a6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_830295.TCGA-BH-A0AY-11A-23R-A089-07.110909_UNC9-SN296_0240_BD0DDBABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23R-A089-07 d9c8ecc3-0e92-49e9-99e4-9976785c73a6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_830302.TCGA-BH-A0AY-11A-23R-A089-07.110909_UNC9-SN296_0240_BD0DDBABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23R-A089-07 d9c8ecc3-0e92-49e9-99e4-9976785c73a6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_830460.TCGA-BH-A0AY-11A-23R-A089-07.110909_UNC9-SN296_0240_BD0DDBABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23R-A090-13 7f6ff8de-dd8f-47bd-9f24-d8ac12d539f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23R-A090-13 7f6ff8de-dd8f-47bd-9f24-d8ac12d539f8 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0AY-11A-23R-A090-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23R-A090-13 7f6ff8de-dd8f-47bd-9f24-d8ac12d539f8 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0AY-11A-23R-A090-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23W-A100-09 b19708f5-7d3a-499f-90fd-3918aaff30c0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23W-A100-09 b19708f5-7d3a-499f-90fd-3918aaff30c0 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0AY TCGA-BH-A0AY-11A TCGA-BH-A0AY-11A-23X-A100-09 44f949f2-5a4f-4bcc-8c0e-0ba993d966c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21D-A12M-02 7969fac9-88ff-403a-bfc2-090969eb165c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21D-A12N-01 55a8c247-5d96-4f48-9fd6-a18f75e9dc32 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21D-A12N-01 55a8c247-5d96-4f48-9fd6-a18f75e9dc32 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B02_747956.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21D-A12N-01 55a8c247-5d96-4f48-9fd6-a18f75e9dc32 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B02_747956.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21D-A12N-01 55a8c247-5d96-4f48-9fd6-a18f75e9dc32 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B02_747956.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21D-A12N-01 55a8c247-5d96-4f48-9fd6-a18f75e9dc32 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B02_747956.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21D-A12N-01 55a8c247-5d96-4f48-9fd6-a18f75e9dc32 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B02_747956.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21D-A12N-01 55a8c247-5d96-4f48-9fd6-a18f75e9dc32 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B02_747956.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21D-A12N-01 55a8c247-5d96-4f48-9fd6-a18f75e9dc32 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B02_747956.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21D-A12N-01 55a8c247-5d96-4f48-9fd6-a18f75e9dc32 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B02_747956.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21D-A12Q-09 e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21D-A12Q-09 e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21D-A12R-05 1b1c8370-08a5-40c3-9931-6ca72bfddf5e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21D-A12R-05 1b1c8370-08a5-40c3-9931-6ca72bfddf5e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324072_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21D-A12R-05 1b1c8370-08a5-40c3-9931-6ca72bfddf5e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324072_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21D-A12R-05 1b1c8370-08a5-40c3-9931-6ca72bfddf5e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-BH-A0AZ-01A-21D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21D-A12R-05 1b1c8370-08a5-40c3-9931-6ca72bfddf5e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-BH-A0AZ-01A-21D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21R-A12O-13 e9e2ec30-81de-40e5-a3bd-75c80b9f6d75 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21R-A12O-13 e9e2ec30-81de-40e5-a3bd-75c80b9f6d75 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0AZ-01A-21R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21R-A12O-13 e9e2ec30-81de-40e5-a3bd-75c80b9f6d75 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0AZ-01A-21R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21R-A12P-07 cb9d4717-15a8-4499-ae3b-e047e5c2926a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21R-A12P-07 cb9d4717-15a8-4499-ae3b-e047e5c2926a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012961_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21R-A12P-07 cb9d4717-15a8-4499-ae3b-e047e5c2926a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012961_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21R-A12P-07 cb9d4717-15a8-4499-ae3b-e047e5c2926a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012961_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21R-A12P-07 cb9d4717-15a8-4499-ae3b-e047e5c2926a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_435899.TCGA-BH-A0AZ-01A-21R-A12P-07.110725_UNC11-SN627_0128_AB0AYGABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21R-A12P-07 cb9d4717-15a8-4499-ae3b-e047e5c2926a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_435905.TCGA-BH-A0AZ-01A-21R-A12P-07.110725_UNC11-SN627_0128_AB0AYGABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21R-A12P-07 cb9d4717-15a8-4499-ae3b-e047e5c2926a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_435909.TCGA-BH-A0AZ-01A-21R-A12P-07.110725_UNC11-SN627_0128_AB0AYGABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-01A TCGA-BH-A0AZ-01A-21W-A14O-09 a8fe39bb-7f1a-4c7b-b124-36299d7fad16 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-11A TCGA-BH-A0AZ-11A-22D-A12M-02 b0c87880-7044-4750-a61c-49660290dd74 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-11A TCGA-BH-A0AZ-11A-22D-A12N-01 a9a4edf8-2582-4ab1-b15b-6c9f833bdd90 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-11A TCGA-BH-A0AZ-11A-22D-A12N-01 a9a4edf8-2582-4ab1-b15b-6c9f833bdd90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F09_748034.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0AZ TCGA-BH-A0AZ-11A TCGA-BH-A0AZ-11A-22D-A12N-01 a9a4edf8-2582-4ab1-b15b-6c9f833bdd90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F09_748034.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-11A TCGA-BH-A0AZ-11A-22D-A12N-01 a9a4edf8-2582-4ab1-b15b-6c9f833bdd90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F09_748034.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-11A TCGA-BH-A0AZ-11A-22D-A12N-01 a9a4edf8-2582-4ab1-b15b-6c9f833bdd90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F09_748034.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-11A TCGA-BH-A0AZ-11A-22D-A12N-01 a9a4edf8-2582-4ab1-b15b-6c9f833bdd90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F09_748034.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-11A TCGA-BH-A0AZ-11A-22D-A12N-01 a9a4edf8-2582-4ab1-b15b-6c9f833bdd90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F09_748034.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-11A TCGA-BH-A0AZ-11A-22D-A12N-01 a9a4edf8-2582-4ab1-b15b-6c9f833bdd90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F09_748034.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-11A TCGA-BH-A0AZ-11A-22D-A12N-01 a9a4edf8-2582-4ab1-b15b-6c9f833bdd90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F09_748034.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-11A TCGA-BH-A0AZ-11A-22D-A12Q-09 4124d527-3ea7-43d5-81b7-0fc9172be9b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-11A TCGA-BH-A0AZ-11A-22D-A12Q-09 4124d527-3ea7-43d5-81b7-0fc9172be9b0 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-11A TCGA-BH-A0AZ-11A-22D-A12R-05 532e8585-7bad-4054-94ef-0ccd094b26f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-11A TCGA-BH-A0AZ-11A-22D-A12R-05 532e8585-7bad-4054-94ef-0ccd094b26f9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324035_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-11A TCGA-BH-A0AZ-11A-22D-A12R-05 532e8585-7bad-4054-94ef-0ccd094b26f9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324035_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-11A TCGA-BH-A0AZ-11A-22D-A12R-05 532e8585-7bad-4054-94ef-0ccd094b26f9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-BH-A0AZ-11A-22D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-11A TCGA-BH-A0AZ-11A-22D-A12R-05 532e8585-7bad-4054-94ef-0ccd094b26f9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-BH-A0AZ-11A-22D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-11A TCGA-BH-A0AZ-11A-22R-A12O-13 5f3bacff-3ecb-482d-999a-cc7c05a4bc09 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-11A TCGA-BH-A0AZ-11A-22R-A12O-13 5f3bacff-3ecb-482d-999a-cc7c05a4bc09 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0AZ-11A-22R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-11A TCGA-BH-A0AZ-11A-22R-A12O-13 5f3bacff-3ecb-482d-999a-cc7c05a4bc09 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0AZ-11A-22R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-11A TCGA-BH-A0AZ-11A-22R-A12P-07 ec31d946-74b0-4984-b3d8-cb1bf58e4d20 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-11A TCGA-BH-A0AZ-11A-22R-A12P-07 ec31d946-74b0-4984-b3d8-cb1bf58e4d20 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407889.TCGA-BH-A0AZ-11A-22R-A12P-07.110725_UNC11-SN627_0129_BC040FABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-11A TCGA-BH-A0AZ-11A-22R-A12P-07 ec31d946-74b0-4984-b3d8-cb1bf58e4d20 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407977.TCGA-BH-A0AZ-11A-22R-A12P-07.110725_UNC11-SN627_0129_BC040FABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-11A TCGA-BH-A0AZ-11A-22R-A12P-07 ec31d946-74b0-4984-b3d8-cb1bf58e4d20 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408007.TCGA-BH-A0AZ-11A-22R-A12P-07.110725_UNC11-SN627_0129_BC040FABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0AZ TCGA-BH-A0AZ-11A TCGA-BH-A0AZ-11A-22W-A14O-09 8ff4260c-378e-4b5b-99c1-f96009084129 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0AZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21D-A10X-02 f41e9582-bfc9-49d2-adec-d65bccaecbf9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21D-A10Y-09 4680fd93-33c8-4aee-942b-5c616acd02cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21D-A10Y-09 4680fd93-33c8-4aee-942b-5c616acd02cf Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21D-A111-01 a41f4ff0-3452-497b-a05f-952d79da82ba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21D-A111-01 a41f4ff0-3452-497b-a05f-952d79da82ba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D08_735122.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21D-A111-01 a41f4ff0-3452-497b-a05f-952d79da82ba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D08_735122.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21D-A111-01 a41f4ff0-3452-497b-a05f-952d79da82ba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D08_735122.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21D-A111-01 a41f4ff0-3452-497b-a05f-952d79da82ba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D08_735122.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21D-A111-01 a41f4ff0-3452-497b-a05f-952d79da82ba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D08_735122.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21D-A111-01 a41f4ff0-3452-497b-a05f-952d79da82ba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D08_735122.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21D-A111-01 a41f4ff0-3452-497b-a05f-952d79da82ba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D08_735122.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21D-A111-01 a41f4ff0-3452-497b-a05f-952d79da82ba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D08_735122.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21D-A112-05 f5969a7f-6129-41c3-b0b4-2c7646621d80 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21D-A112-05 f5969a7f-6129-41c3-b0b4-2c7646621d80 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-BH-A0B0-01A-21D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21D-A112-05 f5969a7f-6129-41c3-b0b4-2c7646621d80 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-BH-A0B0-01A-21D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21D-A112-05 f5969a7f-6129-41c3-b0b4-2c7646621d80 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-BH-A0B0-01A-21D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21R-A114-13 07148145-b169-4811-a51a-4b4893bec997 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21R-A114-13 07148145-b169-4811-a51a-4b4893bec997 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0B0-01A-21R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21R-A114-13 07148145-b169-4811-a51a-4b4893bec997 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0B0-01A-21R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21R-A115-07 059c8834-efd5-447c-97c6-49fd68c09c0d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21R-A115-07 059c8834-efd5-447c-97c6-49fd68c09c0d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012807_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21R-A115-07 059c8834-efd5-447c-97c6-49fd68c09c0d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012807_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21R-A115-07 059c8834-efd5-447c-97c6-49fd68c09c0d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012807_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21R-A115-07 059c8834-efd5-447c-97c6-49fd68c09c0d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_454205.TCGA-BH-A0B0-01A-21R-A115-07.110607_UNC14-SN744_0125_BD0CRWABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21R-A115-07 059c8834-efd5-447c-97c6-49fd68c09c0d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_454208.TCGA-BH-A0B0-01A-21R-A115-07.110607_UNC14-SN744_0125_BD0CRWABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21R-A115-07 059c8834-efd5-447c-97c6-49fd68c09c0d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_454209.TCGA-BH-A0B0-01A-21R-A115-07.110607_UNC14-SN744_0125_BD0CRWABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-01A TCGA-BH-A0B0-01A-21W-A12T-09 9bb29eb9-952e-4659-a0d3-3630c9e4e554 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-10A TCGA-BH-A0B0-10A-01D-A10Z-02 a8c07ece-60ba-4e4c-9d48-19ca25256548 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-10A TCGA-BH-A0B0-10A-01D-A110-09 fc9e6937-9af0-4ecb-983c-510ce060bb0e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-10A TCGA-BH-A0B0-10A-01D-A110-09 fc9e6937-9af0-4ecb-983c-510ce060bb0e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-10A TCGA-BH-A0B0-10A-01D-A113-01 2e1e6c86-fdee-49f9-b5fb-a47c4aced794 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-10A TCGA-BH-A0B0-10A-01D-A113-01 2e1e6c86-fdee-49f9-b5fb-a47c4aced794 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E11_735030.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0B0 TCGA-BH-A0B0-10A TCGA-BH-A0B0-10A-01D-A113-01 2e1e6c86-fdee-49f9-b5fb-a47c4aced794 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E11_735030.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-10A TCGA-BH-A0B0-10A-01D-A113-01 2e1e6c86-fdee-49f9-b5fb-a47c4aced794 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E11_735030.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-10A TCGA-BH-A0B0-10A-01D-A113-01 2e1e6c86-fdee-49f9-b5fb-a47c4aced794 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E11_735030.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-10A TCGA-BH-A0B0-10A-01D-A113-01 2e1e6c86-fdee-49f9-b5fb-a47c4aced794 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E11_735030.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-10A TCGA-BH-A0B0-10A-01D-A113-01 2e1e6c86-fdee-49f9-b5fb-a47c4aced794 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E11_735030.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-10A TCGA-BH-A0B0-10A-01D-A113-01 2e1e6c86-fdee-49f9-b5fb-a47c4aced794 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E11_735030.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-10A TCGA-BH-A0B0-10A-01D-A113-01 2e1e6c86-fdee-49f9-b5fb-a47c4aced794 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E11_735030.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0B0 TCGA-BH-A0B0-10A TCGA-BH-A0B0-10A-01W-A12U-09 898bc4d4-e1b0-4157-b3ab-9d653a99b212 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12D-A058-05 e3719366-2fda-479a-b063-8340fa9a008a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12D-A059-01 4e237dc0-b785-4eb0-9948-a946b41dab8f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12D-A059-01 4e237dc0-b785-4eb0-9948-a946b41dab8f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12D-A059-01 4e237dc0-b785-4eb0-9948-a946b41dab8f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12D-A059-01 4e237dc0-b785-4eb0-9948-a946b41dab8f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12D-A059-01 4e237dc0-b785-4eb0-9948-a946b41dab8f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12D-A059-01 4e237dc0-b785-4eb0-9948-a946b41dab8f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12D-A059-01 4e237dc0-b785-4eb0-9948-a946b41dab8f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12D-A059-01 4e237dc0-b785-4eb0-9948-a946b41dab8f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E02_697130.seg.data.txt'. TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12D-A060-02 7e87e769-9ee5-4530-b211-685b14c9b38e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12D-A074-08 c8099587-abc0-4a98-af77-0362e7f8c799 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12D-A075-09 7e882ef2-7b08-4bfa-aed6-b5e0086b922a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12R-A056-07 0042b857-502f-4d8e-baac-845c1a9bb64b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12R-A056-07 0042b857-502f-4d8e-baac-845c1a9bb64b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012501_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12R-A056-07 0042b857-502f-4d8e-baac-845c1a9bb64b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012501_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12R-A056-07 0042b857-502f-4d8e-baac-845c1a9bb64b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012501_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12R-A056-07 0042b857-502f-4d8e-baac-845c1a9bb64b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480940.TCGA-BH-A0B1-01A-12R-A056-07.110318_SN744_0080_BB042NABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12R-A056-07 0042b857-502f-4d8e-baac-845c1a9bb64b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480945.TCGA-BH-A0B1-01A-12R-A056-07.110318_SN744_0080_BB042NABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12R-A056-07 0042b857-502f-4d8e-baac-845c1a9bb64b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480962.TCGA-BH-A0B1-01A-12R-A056-07.110318_SN744_0080_BB042NABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12R-A057-13 b16c90a7-0af7-47a0-9d31-9fa2c683fc58 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12R-A057-13 b16c90a7-0af7-47a0-9d31-9fa2c683fc58 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0B1-01A-12R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12R-A057-13 b16c90a7-0af7-47a0-9d31-9fa2c683fc58 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0B1-01A-12R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12W-A070-08 1fbf9da4-9abf-46b9-aaf5-2dfb68eecab2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12W-A071-09 de20290a-1560-41fd-896b-a3ae1103423e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12W-A071-09 de20290a-1560-41fd-896b-a3ae1103423e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12X-A072-08 f3d6b34a-4060-41ae-9c28-d4b67feb572c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-01A TCGA-BH-A0B1-01A-12X-A073-09 b375560b-f5ce-44b0-aeb3-9027a23f6a91 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-10A TCGA-BH-A0B1-10A-01D-A059-01 d7e23642-1b1c-4e0b-9e9c-5dcba8dcd17a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-10A TCGA-BH-A0B1-10A-01D-A059-01 d7e23642-1b1c-4e0b-9e9c-5dcba8dcd17a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E05_697076.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0B1 TCGA-BH-A0B1-10A TCGA-BH-A0B1-10A-01D-A059-01 d7e23642-1b1c-4e0b-9e9c-5dcba8dcd17a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E05_697076.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-10A TCGA-BH-A0B1-10A-01D-A059-01 d7e23642-1b1c-4e0b-9e9c-5dcba8dcd17a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E05_697076.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-10A TCGA-BH-A0B1-10A-01D-A059-01 d7e23642-1b1c-4e0b-9e9c-5dcba8dcd17a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E05_697076.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-10A TCGA-BH-A0B1-10A-01D-A059-01 d7e23642-1b1c-4e0b-9e9c-5dcba8dcd17a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E05_697076.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-10A TCGA-BH-A0B1-10A-01D-A059-01 d7e23642-1b1c-4e0b-9e9c-5dcba8dcd17a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E05_697076.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-10A TCGA-BH-A0B1-10A-01D-A059-01 d7e23642-1b1c-4e0b-9e9c-5dcba8dcd17a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E05_697076.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-10A TCGA-BH-A0B1-10A-01D-A059-01 d7e23642-1b1c-4e0b-9e9c-5dcba8dcd17a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E05_697076.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-10A TCGA-BH-A0B1-10A-01D-A060-02 e1e682d3-ebd3-41c6-9f86-3221a3857aef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-10A TCGA-BH-A0B1-10A-01D-A074-08 3eddf104-31bd-47ab-9189-2834fa323e28 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-10A TCGA-BH-A0B1-10A-01D-A075-09 8e7948e9-f15f-46f2-86f9-5f4018941f07 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-10A TCGA-BH-A0B1-10A-01W-A070-08 aa9fc30e-7bbf-4942-8c3f-e51c4cd30bc4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-10A TCGA-BH-A0B1-10A-01W-A071-09 eb76d20f-0575-49c2-a173-c370be9eef44 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-10A TCGA-BH-A0B1-10A-01W-A071-09 eb76d20f-0575-49c2-a173-c370be9eef44 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-10A TCGA-BH-A0B1-10A-01X-A072-08 0f903372-04e0-4874-b284-813b95b5cb59 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B1 TCGA-BH-A0B1-10A TCGA-BH-A0B1-10A-01X-A073-09 66c7b26d-d175-47b4-89c4-48acae5de2e5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B2 TCGA-BH-A0B2-01A TCGA-BH-A0B2-01A-11D-A10K-02 298580bc-ef73-44cb-91e3-923f74c9d5b5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-01A TCGA-BH-A0B2-01A-11D-A10L-01 ae2856f4-dafc-45b6-96af-6c6615cf9475 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-01A TCGA-BH-A0B2-01A-11D-A10L-01 ae2856f4-dafc-45b6-96af-6c6615cf9475 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G06_734624.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-01A TCGA-BH-A0B2-01A-11D-A10L-01 ae2856f4-dafc-45b6-96af-6c6615cf9475 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G06_734624.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-01A TCGA-BH-A0B2-01A-11D-A10L-01 ae2856f4-dafc-45b6-96af-6c6615cf9475 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G06_734624.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-01A TCGA-BH-A0B2-01A-11D-A10L-01 ae2856f4-dafc-45b6-96af-6c6615cf9475 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G06_734624.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-01A TCGA-BH-A0B2-01A-11D-A10L-01 ae2856f4-dafc-45b6-96af-6c6615cf9475 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G06_734624.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-01A TCGA-BH-A0B2-01A-11D-A10L-01 ae2856f4-dafc-45b6-96af-6c6615cf9475 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G06_734624.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-01A TCGA-BH-A0B2-01A-11D-A10L-01 ae2856f4-dafc-45b6-96af-6c6615cf9475 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G06_734624.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-01A TCGA-BH-A0B2-01A-11D-A10L-01 ae2856f4-dafc-45b6-96af-6c6615cf9475 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G06_734624.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-01A TCGA-BH-A0B2-01A-11D-A10M-09 30143b3f-7a18-446f-b3b9-18a6748d7155 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-01A TCGA-BH-A0B2-01A-11D-A10N-05 d56e6268-4f07-457e-87f4-fb87d8d33c5a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-01A TCGA-BH-A0B2-01A-11D-A10N-05 d56e6268-4f07-457e-87f4-fb87d8d33c5a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486012_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-01A TCGA-BH-A0B2-01A-11D-A10N-05 d56e6268-4f07-457e-87f4-fb87d8d33c5a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486012_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-01A TCGA-BH-A0B2-01A-11D-A10N-05 d56e6268-4f07-457e-87f4-fb87d8d33c5a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-BH-A0B2-01A-11D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-01A TCGA-BH-A0B2-01A-11D-A10N-05 d56e6268-4f07-457e-87f4-fb87d8d33c5a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-BH-A0B2-01A-11D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-01A TCGA-BH-A0B2-01A-11R-A10I-13 760f4cd1-ad18-4acd-a1c9-a9c3f396658d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-01A TCGA-BH-A0B2-01A-11R-A10J-07 a27c5907-1ad2-4414-a9c9-448f1b484946 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-01A TCGA-BH-A0B2-01A-11R-A10J-07 a27c5907-1ad2-4414-a9c9-448f1b484946 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012711_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-01A TCGA-BH-A0B2-01A-11R-A10J-07 a27c5907-1ad2-4414-a9c9-448f1b484946 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012711_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-01A TCGA-BH-A0B2-01A-11R-A10J-07 a27c5907-1ad2-4414-a9c9-448f1b484946 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012711_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-01A TCGA-BH-A0B2-01A-11R-A10J-07 a27c5907-1ad2-4414-a9c9-448f1b484946 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442601.TCGA-BH-A0B2-01A-11R-A10J-07.110509_UNC14-SN744_0110_AC02MVABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-01A TCGA-BH-A0B2-01A-11R-A10J-07 a27c5907-1ad2-4414-a9c9-448f1b484946 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442614.TCGA-BH-A0B2-01A-11R-A10J-07.110509_UNC14-SN744_0110_AC02MVABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-01A TCGA-BH-A0B2-01A-11R-A10J-07 a27c5907-1ad2-4414-a9c9-448f1b484946 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442728.TCGA-BH-A0B2-01A-11R-A10J-07.110509_UNC14-SN744_0110_AC02MVABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-01A TCGA-BH-A0B2-01A-11W-A124-09 80c5eea0-7133-4894-a74a-218193e2d5c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-10A TCGA-BH-A0B2-10A-01D-A10K-02 91bd1854-4e4d-4bd9-baea-9d7505bd6b0c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-10A TCGA-BH-A0B2-10A-01D-A10L-01 3a713c13-5bc4-4d9c-9e6f-85b2aaa8d85e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-10A TCGA-BH-A0B2-10A-01D-A10L-01 3a713c13-5bc4-4d9c-9e6f-85b2aaa8d85e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F02_734756.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-10A TCGA-BH-A0B2-10A-01D-A10L-01 3a713c13-5bc4-4d9c-9e6f-85b2aaa8d85e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F02_734756.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-10A TCGA-BH-A0B2-10A-01D-A10L-01 3a713c13-5bc4-4d9c-9e6f-85b2aaa8d85e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F02_734756.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-10A TCGA-BH-A0B2-10A-01D-A10L-01 3a713c13-5bc4-4d9c-9e6f-85b2aaa8d85e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F02_734756.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-10A TCGA-BH-A0B2-10A-01D-A10L-01 3a713c13-5bc4-4d9c-9e6f-85b2aaa8d85e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F02_734756.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-10A TCGA-BH-A0B2-10A-01D-A10L-01 3a713c13-5bc4-4d9c-9e6f-85b2aaa8d85e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F02_734756.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-10A TCGA-BH-A0B2-10A-01D-A10L-01 3a713c13-5bc4-4d9c-9e6f-85b2aaa8d85e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F02_734756.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-10A TCGA-BH-A0B2-10A-01D-A10L-01 3a713c13-5bc4-4d9c-9e6f-85b2aaa8d85e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F02_734756.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-10A TCGA-BH-A0B2-10A-01D-A10M-09 de5fed7f-9770-4cb3-85bd-1b0bec7440da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-10A TCGA-BH-A0B2-10A-01W-A124-09 0a8c0095-44df-4b5e-9479-4a9920692a06 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-11A TCGA-BH-A0B2-11A-11D-A10K-02 8945f4c1-0d6c-4100-80c7-c70d4562f792 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-11A TCGA-BH-A0B2-11A-11D-A10L-01 5abd1c7c-89e9-448c-a35e-1c05d579d1c3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-11A TCGA-BH-A0B2-11A-11D-A10L-01 5abd1c7c-89e9-448c-a35e-1c05d579d1c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B04_734806.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-11A TCGA-BH-A0B2-11A-11D-A10L-01 5abd1c7c-89e9-448c-a35e-1c05d579d1c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B04_734806.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-11A TCGA-BH-A0B2-11A-11D-A10L-01 5abd1c7c-89e9-448c-a35e-1c05d579d1c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B04_734806.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-11A TCGA-BH-A0B2-11A-11D-A10L-01 5abd1c7c-89e9-448c-a35e-1c05d579d1c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B04_734806.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-11A TCGA-BH-A0B2-11A-11D-A10L-01 5abd1c7c-89e9-448c-a35e-1c05d579d1c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B04_734806.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-11A TCGA-BH-A0B2-11A-11D-A10L-01 5abd1c7c-89e9-448c-a35e-1c05d579d1c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B04_734806.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-11A TCGA-BH-A0B2-11A-11D-A10L-01 5abd1c7c-89e9-448c-a35e-1c05d579d1c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B04_734806.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-11A TCGA-BH-A0B2-11A-11D-A10L-01 5abd1c7c-89e9-448c-a35e-1c05d579d1c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B04_734806.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-11A TCGA-BH-A0B2-11A-11D-A10M-09 8e68b6aa-b98c-4207-bc59-d3eacb1b7524 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-11A TCGA-BH-A0B2-11A-11D-A10N-05 483590d7-551b-4e3a-b102-99798e1bc1e8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-11A TCGA-BH-A0B2-11A-11D-A10N-05 483590d7-551b-4e3a-b102-99798e1bc1e8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486012_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-11A TCGA-BH-A0B2-11A-11D-A10N-05 483590d7-551b-4e3a-b102-99798e1bc1e8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486012_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-11A TCGA-BH-A0B2-11A-11D-A10N-05 483590d7-551b-4e3a-b102-99798e1bc1e8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-BH-A0B2-11A-11D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-11A TCGA-BH-A0B2-11A-11D-A10N-05 483590d7-551b-4e3a-b102-99798e1bc1e8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-BH-A0B2-11A-11D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-11A TCGA-BH-A0B2-11A-11R-A10I-13 cf967c04-075a-49c7-8937-3d1d8d938d05 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-11A TCGA-BH-A0B2-11A-11R-A10J-07 83b0bb89-66a7-4c70-87e1-78a0cc7de9e6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-11A TCGA-BH-A0B2-11A-11R-A10J-07 83b0bb89-66a7-4c70-87e1-78a0cc7de9e6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012736_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-11A TCGA-BH-A0B2-11A-11R-A10J-07 83b0bb89-66a7-4c70-87e1-78a0cc7de9e6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012736_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-11A TCGA-BH-A0B2-11A-11R-A10J-07 83b0bb89-66a7-4c70-87e1-78a0cc7de9e6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012736_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-11A TCGA-BH-A0B2-11A-11R-A10J-07 83b0bb89-66a7-4c70-87e1-78a0cc7de9e6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421115.TCGA-BH-A0B2-11A-11R-A10J-07.110606_UNC12-SN629_0090_AD0CTGABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-11A TCGA-BH-A0B2-11A-11R-A10J-07 83b0bb89-66a7-4c70-87e1-78a0cc7de9e6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421152.TCGA-BH-A0B2-11A-11R-A10J-07.110606_UNC12-SN629_0090_AD0CTGABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B2 TCGA-BH-A0B2-11A TCGA-BH-A0B2-11A-11R-A10J-07 83b0bb89-66a7-4c70-87e1-78a0cc7de9e6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421182.TCGA-BH-A0B2-11A-11R-A10J-07.110606_UNC12-SN629_0090_AD0CTGABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM Redaction Genotype mismatch Normal tissue identity mismatch from Jay Bowen/NWCH TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11D-A058-05 ce85f6ea-f017-4cd4-9cd7-0e0611cdd74f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11D-A059-01 c3288d38-aff7-4cf9-8b44-e3eb22e261ca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11D-A059-01 c3288d38-aff7-4cf9-8b44-e3eb22e261ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E08_697096.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11D-A059-01 c3288d38-aff7-4cf9-8b44-e3eb22e261ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E08_697096.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11D-A059-01 c3288d38-aff7-4cf9-8b44-e3eb22e261ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E08_697096.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11D-A059-01 c3288d38-aff7-4cf9-8b44-e3eb22e261ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E08_697096.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11D-A059-01 c3288d38-aff7-4cf9-8b44-e3eb22e261ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E08_697096.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11D-A059-01 c3288d38-aff7-4cf9-8b44-e3eb22e261ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E08_697096.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11D-A059-01 c3288d38-aff7-4cf9-8b44-e3eb22e261ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E08_697096.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11D-A059-01 c3288d38-aff7-4cf9-8b44-e3eb22e261ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E08_697096.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11D-A060-02 5b96dc25-9c94-40d0-9451-5582b66b2241 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11D-A074-08 f0394124-0065-4dc3-86ef-027736195948 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11D-A075-09 5c6a4971-5fa4-40cc-820d-af818236a177 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11D-A10P-05 25aeff25-12d4-43e4-b3d0-53efe0868fe8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11D-A10P-05 25aeff25-12d4-43e4-b3d0-53efe0868fe8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486021_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11D-A10P-05 25aeff25-12d4-43e4-b3d0-53efe0868fe8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486021_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11D-A10P-05 25aeff25-12d4-43e4-b3d0-53efe0868fe8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0B3-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11D-A10P-05 25aeff25-12d4-43e4-b3d0-53efe0868fe8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0B3-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11D-A128-09 43f7a2e0-fec9-4e43-872d-18c6c946fa17 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11R-A056-07 6d2744ba-4817-482b-ad46-2e4e0897ad88 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11R-A056-07 6d2744ba-4817-482b-ad46-2e4e0897ad88 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012507_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11R-A056-07 6d2744ba-4817-482b-ad46-2e4e0897ad88 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012507_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11R-A056-07 6d2744ba-4817-482b-ad46-2e4e0897ad88 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012507_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11R-A056-07 6d2744ba-4817-482b-ad46-2e4e0897ad88 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480941.TCGA-BH-A0B3-01A-11R-A056-07.110318_SN744_0080_BB042NABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11R-A056-07 6d2744ba-4817-482b-ad46-2e4e0897ad88 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480950.TCGA-BH-A0B3-01A-11R-A056-07.110318_SN744_0080_BB042NABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11R-A056-07 6d2744ba-4817-482b-ad46-2e4e0897ad88 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_481046.TCGA-BH-A0B3-01A-11R-A056-07.110318_SN744_0080_BB042NABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11R-A057-13 dbb43987-7a9d-476e-b47c-0ee406c6a3ae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11R-A057-13 dbb43987-7a9d-476e-b47c-0ee406c6a3ae miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0B3-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11R-A057-13 dbb43987-7a9d-476e-b47c-0ee406c6a3ae miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0B3-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11W-A070-08 2a011ca2-9634-48b6-a73d-a3a10c4646c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11W-A071-09 8f4504db-45d9-4873-9532-69ad466fdf2f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11W-A071-09 8f4504db-45d9-4873-9532-69ad466fdf2f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11X-A072-08 f78fdbbf-8fa0-4ac2-b30a-44c2a8bae0d3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-01A TCGA-BH-A0B3-01A-11X-A073-09 310b4219-4eaa-487f-8aba-c26a6634b666 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-10A TCGA-BH-A0B3-10A-01D-A059-01 27671d94-7358-4bc4-9192-6f01b9209217 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-10A TCGA-BH-A0B3-10A-01D-A059-01 27671d94-7358-4bc4-9192-6f01b9209217 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B12_697124.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0B3 TCGA-BH-A0B3-10A TCGA-BH-A0B3-10A-01D-A059-01 27671d94-7358-4bc4-9192-6f01b9209217 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B12_697124.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-10A TCGA-BH-A0B3-10A-01D-A059-01 27671d94-7358-4bc4-9192-6f01b9209217 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B12_697124.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-10A TCGA-BH-A0B3-10A-01D-A059-01 27671d94-7358-4bc4-9192-6f01b9209217 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B12_697124.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-10A TCGA-BH-A0B3-10A-01D-A059-01 27671d94-7358-4bc4-9192-6f01b9209217 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B12_697124.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-10A TCGA-BH-A0B3-10A-01D-A059-01 27671d94-7358-4bc4-9192-6f01b9209217 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B12_697124.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-10A TCGA-BH-A0B3-10A-01D-A059-01 27671d94-7358-4bc4-9192-6f01b9209217 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B12_697124.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-10A TCGA-BH-A0B3-10A-01D-A059-01 27671d94-7358-4bc4-9192-6f01b9209217 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B12_697124.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-10A TCGA-BH-A0B3-10A-01D-A060-02 7c784263-1e6c-4e4c-a54b-cc2a7ad2f3ee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-10A TCGA-BH-A0B3-10A-01D-A074-08 c26685bb-05f1-4e29-a4e2-9cc64289cf65 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-10A TCGA-BH-A0B3-10A-01D-A075-09 6efaacad-57a5-4daf-baeb-72355a4231c5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-10A TCGA-BH-A0B3-10A-01D-A128-09 67d6596d-d6a8-4d16-a10b-c744b2db8117 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-10A TCGA-BH-A0B3-10A-01W-A070-08 0f2a242f-6b97-4d88-8c7f-85b64fd05dff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-10A TCGA-BH-A0B3-10A-01W-A071-09 14a2a9bb-b4d3-4402-81b7-34d2bd314e4b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-10A TCGA-BH-A0B3-10A-01W-A071-09 14a2a9bb-b4d3-4402-81b7-34d2bd314e4b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-10A TCGA-BH-A0B3-10A-01X-A072-08 d46c0152-3627-45f7-854e-433860ec1ac8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-10A TCGA-BH-A0B3-10A-01X-A073-09 23904ae9-396f-44cc-83e4-c2a79fddb5f5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21D-A091-02 64d98d6b-653a-4ffa-b40a-e4a459a1059d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21D-A092-01 209dc774-2725-4d2c-9b5c-1469362ffab4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21D-A092-01 209dc774-2725-4d2c-9b5c-1469362ffab4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G05_729678.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21D-A092-01 209dc774-2725-4d2c-9b5c-1469362ffab4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G05_729678.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21D-A092-01 209dc774-2725-4d2c-9b5c-1469362ffab4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G05_729678.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21D-A092-01 209dc774-2725-4d2c-9b5c-1469362ffab4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G05_729678.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21D-A092-01 209dc774-2725-4d2c-9b5c-1469362ffab4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G05_729678.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21D-A092-01 209dc774-2725-4d2c-9b5c-1469362ffab4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G05_729678.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21D-A092-01 209dc774-2725-4d2c-9b5c-1469362ffab4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G05_729678.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21D-A092-01 209dc774-2725-4d2c-9b5c-1469362ffab4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G05_729678.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21D-A093-05 7d5e64f5-68d7-4511-b0cb-84a7107aae33 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21D-A100-09 19f60048-ff3c-46ee-b314-9188a00a349e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21D-A10Q-05 10d46e50-67bc-4db3-b7ad-2104b61d8c76 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21D-A10Q-05 10d46e50-67bc-4db3-b7ad-2104b61d8c76 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486011_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21D-A10Q-05 10d46e50-67bc-4db3-b7ad-2104b61d8c76 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486011_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21D-A10Q-05 10d46e50-67bc-4db3-b7ad-2104b61d8c76 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0B3-11B-21D-A10Q-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21D-A10Q-05 10d46e50-67bc-4db3-b7ad-2104b61d8c76 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0B3-11B-21D-A10Q-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21D-A128-09 ce23b4fb-a727-4ccb-b4d7-c2e8407abd7e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21R-A089-07 bc387ac9-46c2-49b5-9dbb-2d2b5ea2d437 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21R-A089-07 bc387ac9-46c2-49b5-9dbb-2d2b5ea2d437 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012652_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 61 02-NOV-10 12.30.07.283000000 AM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21R-A089-07 bc387ac9-46c2-49b5-9dbb-2d2b5ea2d437 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012652_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 61 02-NOV-10 12.25.38.097000000 AM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21R-A089-07 bc387ac9-46c2-49b5-9dbb-2d2b5ea2d437 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012652_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 61 02-NOV-10 12.26.20.805000000 AM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21R-A089-07 bc387ac9-46c2-49b5-9dbb-2d2b5ea2d437 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_831001.TCGA-BH-A0B3-11B-21R-A089-07.110909_UNC9-SN296_0240_BD0DDBABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21R-A089-07 bc387ac9-46c2-49b5-9dbb-2d2b5ea2d437 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_831017.TCGA-BH-A0B3-11B-21R-A089-07.110909_UNC9-SN296_0240_BD0DDBABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21R-A089-07 bc387ac9-46c2-49b5-9dbb-2d2b5ea2d437 RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0B3-11B-21R-A090-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21R-A090-13 dbc28898-4e1e-4b4a-95fb-0f189ba7323a miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0B3-11B-21R-A090-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21W-A100-09 bcb878fe-26c0-462a-83db-a6a586a25534 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21W-A100-09 bcb878fe-26c0-462a-83db-a6a586a25534 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0B3 TCGA-BH-A0B3-11B TCGA-BH-A0B3-11B-21X-A100-09 6473151c-c341-49a9-ae78-d99c6b5881a5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11D-A00Y-05 abb1010b-ff2d-4e53-b0f9-affd2050af21 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11D-A00Y-05 abb1010b-ff2d-4e53-b0f9-affd2050af21 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-BH-A0B4-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11D-A00Y-05 abb1010b-ff2d-4e53-b0f9-affd2050af21 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-BH-A0B4-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11D-A00Y-05 abb1010b-ff2d-4e53-b0f9-affd2050af21 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-BH-A0B4-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11D-A011-01 bce6d618-4fdf-49fe-b3fe-87709bd79d75 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11D-A011-01 bce6d618-4fdf-49fe-b3fe-87709bd79d75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D04_628450.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11D-A011-01 bce6d618-4fdf-49fe-b3fe-87709bd79d75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D04_628450.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11D-A011-01 bce6d618-4fdf-49fe-b3fe-87709bd79d75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D04_628450.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11D-A011-01 bce6d618-4fdf-49fe-b3fe-87709bd79d75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D04_628450.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11D-A011-01 bce6d618-4fdf-49fe-b3fe-87709bd79d75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D04_628450.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11D-A011-01 bce6d618-4fdf-49fe-b3fe-87709bd79d75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D04_628450.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11D-A011-01 bce6d618-4fdf-49fe-b3fe-87709bd79d75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D04_628450.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11D-A011-01 bce6d618-4fdf-49fe-b3fe-87709bd79d75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_D04_628450.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11D-A015-09 9fc7c59c-5027-439b-b7d7-c9658f9cf270 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11D-A016-08 a2bc13f2-f78c-4be5-adad-a9a84a94b5d0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11D-A068-02 781eba89-e6cb-4151-8979-eebb794caeee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11R-A00Z-07 8af4a557-aebf-44ac-8ed5-b8b7b10ed24e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11R-A00Z-07 8af4a557-aebf-44ac-8ed5-b8b7b10ed24e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011856_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11R-A00Z-07 8af4a557-aebf-44ac-8ed5-b8b7b10ed24e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011856_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11R-A00Z-07 8af4a557-aebf-44ac-8ed5-b8b7b10ed24e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011856_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11R-A010-13 9bf6e32c-a402-43af-bcb2-ef41cee6c6a9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11R-A010-13 9bf6e32c-a402-43af-bcb2-ef41cee6c6a9 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0B4-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11R-A010-13 9bf6e32c-a402-43af-bcb2-ef41cee6c6a9 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0B4-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11W-A019-09 83bee702-eb97-4216-a47e-d4e4eece279a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11W-A019-09 83bee702-eb97-4216-a47e-d4e4eece279a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11W-A020-08 02ccecdb-f6e0-4b71-8f58-e146f1163e1d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11X-A023-09 27ea4e0e-d1e5-476c-8580-b5d448486963 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-01A TCGA-BH-A0B4-01A-11X-A024-08 9d80645b-60e3-4a4f-8e47-e964e3a42776 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-10A TCGA-BH-A0B4-10A-01D-A012-01 ac2be5a1-e324-48f3-b3cf-68d39d16c27e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-10A TCGA-BH-A0B4-10A-01D-A012-01 ac2be5a1-e324-48f3-b3cf-68d39d16c27e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G10_628528.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-BH-A0B4 TCGA-BH-A0B4-10A TCGA-BH-A0B4-10A-01D-A012-01 ac2be5a1-e324-48f3-b3cf-68d39d16c27e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G10_628528.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-10A TCGA-BH-A0B4-10A-01D-A012-01 ac2be5a1-e324-48f3-b3cf-68d39d16c27e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G10_628528.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-10A TCGA-BH-A0B4-10A-01D-A012-01 ac2be5a1-e324-48f3-b3cf-68d39d16c27e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G10_628528.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-10A TCGA-BH-A0B4-10A-01D-A012-01 ac2be5a1-e324-48f3-b3cf-68d39d16c27e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G10_628528.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-10A TCGA-BH-A0B4-10A-01D-A012-01 ac2be5a1-e324-48f3-b3cf-68d39d16c27e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G10_628528.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-10A TCGA-BH-A0B4-10A-01D-A012-01 ac2be5a1-e324-48f3-b3cf-68d39d16c27e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G10_628528.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-10A TCGA-BH-A0B4-10A-01D-A012-01 ac2be5a1-e324-48f3-b3cf-68d39d16c27e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G10_628528.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-10A TCGA-BH-A0B4-10A-01D-A017-09 ea9357f7-e3af-41f4-a910-f0150c35ae1b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-10A TCGA-BH-A0B4-10A-01D-A018-08 31f5804d-6956-49bb-85ea-cad9d5415f2d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-10A TCGA-BH-A0B4-10A-01D-A069-02 f59b87a1-7f27-4273-ada7-2393c2d2d130 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-10A TCGA-BH-A0B4-10A-01W-A021-09 cf1209cc-b0f9-40d1-9f55-f04a74981a96 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-10A TCGA-BH-A0B4-10A-01W-A021-09 cf1209cc-b0f9-40d1-9f55-f04a74981a96 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-10A TCGA-BH-A0B4-10A-01W-A022-08 31867920-7685-490d-86b4-a6b6d72a80ab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-10A TCGA-BH-A0B4-10A-01X-A025-09 d9397b09-a6b2-4af9-9bb6-ee8712ed12bb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0B4 TCGA-BH-A0B4-10A TCGA-BH-A0B4-10A-01X-A026-08 0d4ec3af-1321-4979-a0bf-4724613fead1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11D-A12M-02 c3d97731-69cf-44c8-8357-552400205a8d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11D-A12N-01 78ff5370-519b-4bb9-ae5a-67f862038ff8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11D-A12N-01 78ff5370-519b-4bb9-ae5a-67f862038ff8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D08_747930.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11D-A12N-01 78ff5370-519b-4bb9-ae5a-67f862038ff8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D08_747930.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11D-A12N-01 78ff5370-519b-4bb9-ae5a-67f862038ff8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D08_747930.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11D-A12N-01 78ff5370-519b-4bb9-ae5a-67f862038ff8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D08_747930.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11D-A12N-01 78ff5370-519b-4bb9-ae5a-67f862038ff8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D08_747930.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11D-A12N-01 78ff5370-519b-4bb9-ae5a-67f862038ff8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D08_747930.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11D-A12N-01 78ff5370-519b-4bb9-ae5a-67f862038ff8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D08_747930.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11D-A12N-01 78ff5370-519b-4bb9-ae5a-67f862038ff8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D08_747930.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11D-A12Q-09 dfa0f8ea-ae94-4673-9751-f6cdad26022a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11D-A12Q-09 dfa0f8ea-ae94-4673-9751-f6cdad26022a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11D-A12R-05 d7e5f53f-e7e0-4c39-8a2a-0ada3f1f3434 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11D-A12R-05 d7e5f53f-e7e0-4c39-8a2a-0ada3f1f3434 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324037_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11D-A12R-05 d7e5f53f-e7e0-4c39-8a2a-0ada3f1f3434 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324037_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11D-A12R-05 d7e5f53f-e7e0-4c39-8a2a-0ada3f1f3434 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-BH-A0B5-01A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11D-A12R-05 d7e5f53f-e7e0-4c39-8a2a-0ada3f1f3434 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-BH-A0B5-01A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11R-A12O-13 453eb89d-bb9a-4715-b63b-0edaffce9530 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11R-A12O-13 453eb89d-bb9a-4715-b63b-0edaffce9530 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0B5-01A-11R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11R-A12O-13 453eb89d-bb9a-4715-b63b-0edaffce9530 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0B5-01A-11R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11R-A12P-07 4b964043-f6dd-4f19-ab4c-439ee68ce2b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11R-A12P-07 4b964043-f6dd-4f19-ab4c-439ee68ce2b0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013049_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11R-A12P-07 4b964043-f6dd-4f19-ab4c-439ee68ce2b0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013049_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11R-A12P-07 4b964043-f6dd-4f19-ab4c-439ee68ce2b0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013049_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11R-A12P-07 4b964043-f6dd-4f19-ab4c-439ee68ce2b0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408145.TCGA-BH-A0B5-01A-11R-A12P-07.110725_UNC11-SN627_0128_AB0AYGABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11R-A12P-07 4b964043-f6dd-4f19-ab4c-439ee68ce2b0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408147.TCGA-BH-A0B5-01A-11R-A12P-07.110725_UNC11-SN627_0128_AB0AYGABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11R-A12P-07 4b964043-f6dd-4f19-ab4c-439ee68ce2b0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408168.TCGA-BH-A0B5-01A-11R-A12P-07.110725_UNC11-SN627_0128_AB0AYGABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-01A TCGA-BH-A0B5-01A-11W-A14O-09 c01a2d75-9822-40e1-850c-8a9ffecd0491 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-11A TCGA-BH-A0B5-11A-23D-A12M-02 07df19a7-c843-4b90-b74c-dc7b5ff18c38 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-11A TCGA-BH-A0B5-11A-23D-A12N-01 c8598b19-ddc0-49d6-bd7e-f209cc172e7a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-11A TCGA-BH-A0B5-11A-23D-A12N-01 c8598b19-ddc0-49d6-bd7e-f209cc172e7a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H04_747986.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0B5 TCGA-BH-A0B5-11A TCGA-BH-A0B5-11A-23D-A12N-01 c8598b19-ddc0-49d6-bd7e-f209cc172e7a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H04_747986.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-11A TCGA-BH-A0B5-11A-23D-A12N-01 c8598b19-ddc0-49d6-bd7e-f209cc172e7a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H04_747986.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-11A TCGA-BH-A0B5-11A-23D-A12N-01 c8598b19-ddc0-49d6-bd7e-f209cc172e7a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H04_747986.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-11A TCGA-BH-A0B5-11A-23D-A12N-01 c8598b19-ddc0-49d6-bd7e-f209cc172e7a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H04_747986.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-11A TCGA-BH-A0B5-11A-23D-A12N-01 c8598b19-ddc0-49d6-bd7e-f209cc172e7a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H04_747986.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-11A TCGA-BH-A0B5-11A-23D-A12N-01 c8598b19-ddc0-49d6-bd7e-f209cc172e7a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H04_747986.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-11A TCGA-BH-A0B5-11A-23D-A12N-01 c8598b19-ddc0-49d6-bd7e-f209cc172e7a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H04_747986.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-11A TCGA-BH-A0B5-11A-23D-A12Q-09 89cebffb-5b28-4c36-8189-405ac708ba66 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-11A TCGA-BH-A0B5-11A-23R-A12O-13 a3b3f09d-f6d6-4db7-b709-88731b121d37 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-11A TCGA-BH-A0B5-11A-23R-A12O-13 a3b3f09d-f6d6-4db7-b709-88731b121d37 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0B5-11A-23R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-11A TCGA-BH-A0B5-11A-23R-A12O-13 a3b3f09d-f6d6-4db7-b709-88731b121d37 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0B5-11A-23R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-11A TCGA-BH-A0B5-11A-23R-A12P-07 35429f42-252a-4a9d-8e99-125f26019418 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-11A TCGA-BH-A0B5-11A-23R-A12P-07 35429f42-252a-4a9d-8e99-125f26019418 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013063_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-11A TCGA-BH-A0B5-11A-23R-A12P-07 35429f42-252a-4a9d-8e99-125f26019418 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013063_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-11A TCGA-BH-A0B5-11A-23R-A12P-07 35429f42-252a-4a9d-8e99-125f26019418 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013063_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-11A TCGA-BH-A0B5-11A-23R-A12P-07 35429f42-252a-4a9d-8e99-125f26019418 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_435544.TCGA-BH-A0B5-11A-23R-A12P-07.110801_UNC10-SN254_0250_AC01YCABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-11A TCGA-BH-A0B5-11A-23R-A12P-07 35429f42-252a-4a9d-8e99-125f26019418 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_435578.TCGA-BH-A0B5-11A-23R-A12P-07.110801_UNC10-SN254_0250_AC01YCABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-11A TCGA-BH-A0B5-11A-23R-A12P-07 35429f42-252a-4a9d-8e99-125f26019418 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_435723.TCGA-BH-A0B5-11A-23R-A12P-07.110801_UNC10-SN254_0250_AC01YCABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-11A TCGA-BH-A0B5-11A-23W-A14O-09 74428f88-9ecb-427b-83a6-faee8ee09c24 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0B5 TCGA-BH-A0B5-11A TCGA-BH-A0B5-11A-23W-A14O-09 74428f88-9ecb-427b-83a6-faee8ee09c24 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0B6 TCGA-BH-A0B6-01A TCGA-BH-A0B6-01A-11D-A19X-01 aee8a3d7-7392-4e87-8315-b4fb849705fe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-BH-A0B6 TCGA-BH-A0B6-01A TCGA-BH-A0B6-01A-11D-A19Y-09 9e575ee5-731c-49fd-80fc-944b861e0ea7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-BH-A0B6 TCGA-BH-A0B6-01A TCGA-BH-A0B6-01A-11D-A19Z-05 399533f3-9d1d-4a6d-98be-558dc8b74cad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-BH-A0B6 TCGA-BH-A0B6-01A TCGA-BH-A0B6-01A-11R-A19V-13 17725808-dd7b-4aae-b968-b9f6128c3fbf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-BH-A0B6 TCGA-BH-A0B6-01A TCGA-BH-A0B6-01A-11R-A19W-07 b455387f-a8b4-43b8-b898-89628723d7da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-BH-A0B6 TCGA-BH-A0B6-01A TCGA-BH-A0B6-01A-11W-A216-09 00075575-e93e-4a96-a158-139387a4625b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-BH-A0B6 TCGA-BH-A0B6-10A TCGA-BH-A0B6-10A-01D-A19X-01 722601a2-76fa-4791-bf9e-1f714cd09a1d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-BH-A0B6 TCGA-BH-A0B6-10A TCGA-BH-A0B6-10A-01D-A19Y-09 7b99568d-3c2e-41a9-b8b8-0ba296a21aaf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-BH-A0B6 TCGA-BH-A0B6-10A TCGA-BH-A0B6-10A-01W-A216-09 3451e489-90c8-4047-a8ee-3717d23e65bf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12D-A10X-02 17a2a2af-bc8c-48a7-836e-b7e5b6f3d5b6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12D-A10Y-09 2627cdc1-dc02-4816-8628-cab8c8e79139 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12D-A10Y-09 2627cdc1-dc02-4816-8628-cab8c8e79139 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12D-A111-01 08da84c6-2240-4884-be29-4f7c683f9e4e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12D-A111-01 08da84c6-2240-4884-be29-4f7c683f9e4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B08_735148.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12D-A111-01 08da84c6-2240-4884-be29-4f7c683f9e4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B08_735148.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12D-A111-01 08da84c6-2240-4884-be29-4f7c683f9e4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B08_735148.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12D-A111-01 08da84c6-2240-4884-be29-4f7c683f9e4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B08_735148.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12D-A111-01 08da84c6-2240-4884-be29-4f7c683f9e4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B08_735148.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12D-A111-01 08da84c6-2240-4884-be29-4f7c683f9e4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B08_735148.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12D-A111-01 08da84c6-2240-4884-be29-4f7c683f9e4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B08_735148.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12D-A111-01 08da84c6-2240-4884-be29-4f7c683f9e4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B08_735148.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12D-A112-05 28c6c9e4-0e38-4d51-93db-b15782149470 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12D-A112-05 28c6c9e4-0e38-4d51-93db-b15782149470 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-BH-A0B7-01A-12D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12D-A112-05 28c6c9e4-0e38-4d51-93db-b15782149470 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-BH-A0B7-01A-12D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12D-A112-05 28c6c9e4-0e38-4d51-93db-b15782149470 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-BH-A0B7-01A-12D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12R-A114-13 b62fc2d5-c2ca-4c52-be30-4fb6044d71e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12R-A114-13 b62fc2d5-c2ca-4c52-be30-4fb6044d71e4 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0B7-01A-12R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12R-A114-13 b62fc2d5-c2ca-4c52-be30-4fb6044d71e4 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0B7-01A-12R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12R-A115-07 2af2adfe-bd7b-4eb1-9971-182b11075159 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12R-A115-07 2af2adfe-bd7b-4eb1-9971-182b11075159 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012818_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12R-A115-07 2af2adfe-bd7b-4eb1-9971-182b11075159 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012818_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12R-A115-07 2af2adfe-bd7b-4eb1-9971-182b11075159 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012818_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12R-A115-07 2af2adfe-bd7b-4eb1-9971-182b11075159 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442503.TCGA-BH-A0B7-01A-12R-A115-07.110620_UNC11-SN627_0109_AD0CNFABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12R-A115-07 2af2adfe-bd7b-4eb1-9971-182b11075159 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442510.TCGA-BH-A0B7-01A-12R-A115-07.110620_UNC11-SN627_0109_AD0CNFABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12R-A115-07 2af2adfe-bd7b-4eb1-9971-182b11075159 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442591.TCGA-BH-A0B7-01A-12R-A115-07.110620_UNC11-SN627_0109_AD0CNFABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-01A TCGA-BH-A0B7-01A-12W-A12T-09 192dee18-dcfe-4849-ae77-ce4437f5a0f0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-10A TCGA-BH-A0B7-10A-01D-A10Z-02 ae02858e-0303-4f50-9713-7b2d39ba3056 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-10A TCGA-BH-A0B7-10A-01D-A110-09 b3a3a5b7-80bf-49fa-8d4f-ad3086209295 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-10A TCGA-BH-A0B7-10A-01D-A110-09 b3a3a5b7-80bf-49fa-8d4f-ad3086209295 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-10A TCGA-BH-A0B7-10A-01D-A113-01 1977484e-05ce-4e85-8b35-3bd85be4746b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-10A TCGA-BH-A0B7-10A-01D-A113-01 1977484e-05ce-4e85-8b35-3bd85be4746b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A04_735014.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0B7 TCGA-BH-A0B7-10A TCGA-BH-A0B7-10A-01D-A113-01 1977484e-05ce-4e85-8b35-3bd85be4746b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A04_735014.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-10A TCGA-BH-A0B7-10A-01D-A113-01 1977484e-05ce-4e85-8b35-3bd85be4746b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A04_735014.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-10A TCGA-BH-A0B7-10A-01D-A113-01 1977484e-05ce-4e85-8b35-3bd85be4746b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A04_735014.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-10A TCGA-BH-A0B7-10A-01D-A113-01 1977484e-05ce-4e85-8b35-3bd85be4746b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A04_735014.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-10A TCGA-BH-A0B7-10A-01D-A113-01 1977484e-05ce-4e85-8b35-3bd85be4746b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A04_735014.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-10A TCGA-BH-A0B7-10A-01D-A113-01 1977484e-05ce-4e85-8b35-3bd85be4746b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A04_735014.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-10A TCGA-BH-A0B7-10A-01D-A113-01 1977484e-05ce-4e85-8b35-3bd85be4746b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A04_735014.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-10A TCGA-BH-A0B7-10A-01W-A12U-09 08d8a73d-4e07-49dc-b03d-326f78fcf9e3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34D-A10X-02 10895195-9f21-43ab-95af-a072f8663f03 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34D-A10Y-09 5fcc5f15-40eb-496a-9224-b945b471c43e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34D-A10Y-09 5fcc5f15-40eb-496a-9224-b945b471c43e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34D-A111-01 c6d7fed2-e1b8-4367-99fa-62bfc648a9c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34D-A111-01 c6d7fed2-e1b8-4367-99fa-62bfc648a9c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F06_735124.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34D-A111-01 c6d7fed2-e1b8-4367-99fa-62bfc648a9c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F06_735124.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34D-A111-01 c6d7fed2-e1b8-4367-99fa-62bfc648a9c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F06_735124.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34D-A111-01 c6d7fed2-e1b8-4367-99fa-62bfc648a9c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F06_735124.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34D-A111-01 c6d7fed2-e1b8-4367-99fa-62bfc648a9c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F06_735124.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34D-A111-01 c6d7fed2-e1b8-4367-99fa-62bfc648a9c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F06_735124.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34D-A111-01 c6d7fed2-e1b8-4367-99fa-62bfc648a9c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F06_735124.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34D-A111-01 c6d7fed2-e1b8-4367-99fa-62bfc648a9c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F06_735124.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34D-A112-05 d1cd8143-ccc7-40ba-b136-82097c2bc334 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34D-A112-05 d1cd8143-ccc7-40ba-b136-82097c2bc334 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-BH-A0B7-11A-34D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34D-A112-05 d1cd8143-ccc7-40ba-b136-82097c2bc334 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-BH-A0B7-11A-34D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34D-A112-05 d1cd8143-ccc7-40ba-b136-82097c2bc334 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-BH-A0B7-11A-34D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34R-A114-13 d4af5ee4-6918-42f0-8ee4-1ba34af53ac8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34R-A114-13 d4af5ee4-6918-42f0-8ee4-1ba34af53ac8 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0B7-11A-34R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34R-A114-13 d4af5ee4-6918-42f0-8ee4-1ba34af53ac8 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0B7-11A-34R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34R-A115-07 30cee921-7fb5-4543-aeb6-ab3eaf669f84 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34R-A115-07 30cee921-7fb5-4543-aeb6-ab3eaf669f84 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012829_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34R-A115-07 30cee921-7fb5-4543-aeb6-ab3eaf669f84 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012829_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34R-A115-07 30cee921-7fb5-4543-aeb6-ab3eaf669f84 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012829_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34R-A115-07 30cee921-7fb5-4543-aeb6-ab3eaf669f84 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421302.TCGA-BH-A0B7-11A-34R-A115-07.110527_UNC10-SN254_0224_AD0CPKABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34R-A115-07 30cee921-7fb5-4543-aeb6-ab3eaf669f84 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421306.TCGA-BH-A0B7-11A-34R-A115-07.110527_UNC10-SN254_0224_AD0CPKABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34R-A115-07 30cee921-7fb5-4543-aeb6-ab3eaf669f84 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421318.TCGA-BH-A0B7-11A-34R-A115-07.110527_UNC10-SN254_0224_AD0CPKABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B7 TCGA-BH-A0B7-11A TCGA-BH-A0B7-11A-34W-A12T-09 b9909842-6c5a-4b86-83b8-fed551378521 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21D-A058-05 36e0fe42-096c-483d-bf5b-e2fe3690bbcf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21D-A059-01 79cc92c6-95f1-4a56-b064-d26a3d38b254 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21D-A059-01 79cc92c6-95f1-4a56-b064-d26a3d38b254 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21D-A059-01 79cc92c6-95f1-4a56-b064-d26a3d38b254 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21D-A059-01 79cc92c6-95f1-4a56-b064-d26a3d38b254 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21D-A059-01 79cc92c6-95f1-4a56-b064-d26a3d38b254 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21D-A059-01 79cc92c6-95f1-4a56-b064-d26a3d38b254 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21D-A059-01 79cc92c6-95f1-4a56-b064-d26a3d38b254 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21D-A059-01 79cc92c6-95f1-4a56-b064-d26a3d38b254 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G05_697094.seg.data.txt'. TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21D-A060-02 bee27d71-ae7a-417c-bc0f-9ec387e303d2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21D-A074-08 7001f840-b84d-49a3-9f1e-f82534620ce1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21D-A075-09 774f04c1-3116-46b6-ae3d-026bf08235b7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21D-A10P-05 a3cfd83c-e5d7-4890-82aa-2e14f5a07d63 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21D-A10P-05 a3cfd83c-e5d7-4890-82aa-2e14f5a07d63 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486019_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21D-A10P-05 a3cfd83c-e5d7-4890-82aa-2e14f5a07d63 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486019_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21D-A10P-05 a3cfd83c-e5d7-4890-82aa-2e14f5a07d63 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0B8-01A-21D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21D-A10P-05 a3cfd83c-e5d7-4890-82aa-2e14f5a07d63 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0B8-01A-21D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21R-A056-07 de7eef02-1a8d-4a6a-9d87-e2b1430066e3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21R-A056-07 de7eef02-1a8d-4a6a-9d87-e2b1430066e3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012513_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21R-A056-07 de7eef02-1a8d-4a6a-9d87-e2b1430066e3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012513_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21R-A056-07 de7eef02-1a8d-4a6a-9d87-e2b1430066e3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012513_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21R-A056-07 de7eef02-1a8d-4a6a-9d87-e2b1430066e3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480926.TCGA-BH-A0B8-01A-21R-A056-07.110318_SN744_0080_BB042NABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21R-A056-07 de7eef02-1a8d-4a6a-9d87-e2b1430066e3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480943.TCGA-BH-A0B8-01A-21R-A056-07.110318_SN744_0080_BB042NABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21R-A056-07 de7eef02-1a8d-4a6a-9d87-e2b1430066e3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480960.TCGA-BH-A0B8-01A-21R-A056-07.110318_SN744_0080_BB042NABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21R-A057-13 7bf27b10-030c-47f8-8b28-161e16c848f1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21R-A057-13 7bf27b10-030c-47f8-8b28-161e16c848f1 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0B8-01A-21R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21R-A057-13 7bf27b10-030c-47f8-8b28-161e16c848f1 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0B8-01A-21R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21W-A070-08 9881b0eb-5c99-4d50-b9c4-a8b0f1ff757e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21W-A071-09 29798513-2bb1-49f8-8cf3-c903d72072c3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21W-A071-09 29798513-2bb1-49f8-8cf3-c903d72072c3 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21X-A072-08 30ccb416-a69e-450b-8b13-082e50177f05 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-01A TCGA-BH-A0B8-01A-21X-A073-09 d82ca77b-57af-4e4d-849d-8b27e453a0b8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-10A TCGA-BH-A0B8-10A-01D-A059-01 5a25f520-36a9-4ece-8a45-e1a1dff1482b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-10A TCGA-BH-A0B8-10A-01D-A059-01 5a25f520-36a9-4ece-8a45-e1a1dff1482b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E12_697128.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0B8 TCGA-BH-A0B8-10A TCGA-BH-A0B8-10A-01D-A059-01 5a25f520-36a9-4ece-8a45-e1a1dff1482b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E12_697128.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-10A TCGA-BH-A0B8-10A-01D-A059-01 5a25f520-36a9-4ece-8a45-e1a1dff1482b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E12_697128.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-10A TCGA-BH-A0B8-10A-01D-A059-01 5a25f520-36a9-4ece-8a45-e1a1dff1482b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E12_697128.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-10A TCGA-BH-A0B8-10A-01D-A059-01 5a25f520-36a9-4ece-8a45-e1a1dff1482b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E12_697128.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-10A TCGA-BH-A0B8-10A-01D-A059-01 5a25f520-36a9-4ece-8a45-e1a1dff1482b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E12_697128.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-10A TCGA-BH-A0B8-10A-01D-A059-01 5a25f520-36a9-4ece-8a45-e1a1dff1482b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E12_697128.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-10A TCGA-BH-A0B8-10A-01D-A059-01 5a25f520-36a9-4ece-8a45-e1a1dff1482b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E12_697128.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-10A TCGA-BH-A0B8-10A-01D-A060-02 3ea7fae5-8089-4aaf-bbc4-78a18cf3be9b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-10A TCGA-BH-A0B8-10A-01D-A074-08 9db300b9-d1f8-4303-aaa6-c0ef020cef0f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-10A TCGA-BH-A0B8-10A-01D-A075-09 67d67f11-d12c-46fa-bf7e-d22d7fd3a1c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-10A TCGA-BH-A0B8-10A-01W-A070-08 2a548283-5ff0-467c-a9d8-39884e167614 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-10A TCGA-BH-A0B8-10A-01W-A071-09 362512ab-407f-47d5-9d9a-dd29647fd176 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-10A TCGA-BH-A0B8-10A-01W-A071-09 362512ab-407f-47d5-9d9a-dd29647fd176 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-10A TCGA-BH-A0B8-10A-01X-A072-08 5b3dc544-5160-4fb6-9068-f0369f4a4ce2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-10A TCGA-BH-A0B8-10A-01X-A073-09 ab13f111-7a58-4004-acf6-9761233129cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-11A TCGA-BH-A0B8-11A-41D-A092-01 4e89156f-3e45-4d78-bd6f-589f04d44236 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-11A TCGA-BH-A0B8-11A-41D-A092-01 4e89156f-3e45-4d78-bd6f-589f04d44236 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F10_729568.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0B8 TCGA-BH-A0B8-11A TCGA-BH-A0B8-11A-41D-A092-01 4e89156f-3e45-4d78-bd6f-589f04d44236 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F10_729568.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-11A TCGA-BH-A0B8-11A-41D-A092-01 4e89156f-3e45-4d78-bd6f-589f04d44236 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F10_729568.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-11A TCGA-BH-A0B8-11A-41D-A092-01 4e89156f-3e45-4d78-bd6f-589f04d44236 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F10_729568.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-11A TCGA-BH-A0B8-11A-41D-A092-01 4e89156f-3e45-4d78-bd6f-589f04d44236 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F10_729568.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-11A TCGA-BH-A0B8-11A-41D-A092-01 4e89156f-3e45-4d78-bd6f-589f04d44236 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F10_729568.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-11A TCGA-BH-A0B8-11A-41D-A092-01 4e89156f-3e45-4d78-bd6f-589f04d44236 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F10_729568.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-11A TCGA-BH-A0B8-11A-41D-A092-01 4e89156f-3e45-4d78-bd6f-589f04d44236 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F10_729568.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-11A TCGA-BH-A0B8-11A-41D-A093-05 bd021089-acf9-41c6-8c2c-cce1d1a507be Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-11A TCGA-BH-A0B8-11A-41D-A093-05 bd021089-acf9-41c6-8c2c-cce1d1a507be DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486025_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-11A TCGA-BH-A0B8-11A-41D-A093-05 bd021089-acf9-41c6-8c2c-cce1d1a507be DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486025_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-11A TCGA-BH-A0B8-11A-41D-A093-05 bd021089-acf9-41c6-8c2c-cce1d1a507be DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0B8-11A-41D-A093-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-11A TCGA-BH-A0B8-11A-41D-A093-05 bd021089-acf9-41c6-8c2c-cce1d1a507be DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0B8-11A-41D-A093-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-11A TCGA-BH-A0B8-11A-41D-A10E-09 31fbf0c3-37cb-4da4-af1d-e5e606ddb511 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-11A TCGA-BH-A0B8-11A-41R-A089-07 61e357f3-e4e1-49b8-9e37-7e0ef5a29e23 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-11A TCGA-BH-A0B8-11A-41R-A089-07 61e357f3-e4e1-49b8-9e37-7e0ef5a29e23 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012660_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 61 02-NOV-10 12.30.07.283000000 AM TCGA-BH-A0B8 TCGA-BH-A0B8-11A TCGA-BH-A0B8-11A-41R-A089-07 61e357f3-e4e1-49b8-9e37-7e0ef5a29e23 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012660_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 61 02-NOV-10 12.25.38.097000000 AM TCGA-BH-A0B8 TCGA-BH-A0B8-11A TCGA-BH-A0B8-11A-41R-A089-07 61e357f3-e4e1-49b8-9e37-7e0ef5a29e23 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012660_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 61 02-NOV-10 12.26.20.805000000 AM TCGA-BH-A0B8 TCGA-BH-A0B8-11A TCGA-BH-A0B8-11A-41R-A089-07 61e357f3-e4e1-49b8-9e37-7e0ef5a29e23 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_830334.TCGA-BH-A0B8-11A-41R-A089-07.110909_UNC9-SN296_0240_BD0DDBABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-11A TCGA-BH-A0B8-11A-41R-A089-07 61e357f3-e4e1-49b8-9e37-7e0ef5a29e23 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_830344.TCGA-BH-A0B8-11A-41R-A089-07.110909_UNC9-SN296_0240_BD0DDBABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-11A TCGA-BH-A0B8-11A-41R-A089-07 61e357f3-e4e1-49b8-9e37-7e0ef5a29e23 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_830488.TCGA-BH-A0B8-11A-41R-A089-07.110909_UNC9-SN296_0240_BD0DDBABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-11A TCGA-BH-A0B8-11A-41W-A10F-09 371bff18-75e9-459a-9cf6-417ced089cfc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-11A TCGA-BH-A0B8-11A-41W-A10F-09 371bff18-75e9-459a-9cf6-417ced089cfc Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0B8 TCGA-BH-A0B8-11A TCGA-BH-A0B8-11A-41X-A10F-09 ce530ba9-b734-4a72-83ff-86878650b513 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11D-A058-05 edff8793-809e-473e-94e2-99f79b0249e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11D-A059-01 7fd0974b-7ac4-4bdd-904d-234af0722313 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11D-A059-01 7fd0974b-7ac4-4bdd-904d-234af0722313 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C02_697152.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11D-A059-01 7fd0974b-7ac4-4bdd-904d-234af0722313 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C02_697152.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11D-A059-01 7fd0974b-7ac4-4bdd-904d-234af0722313 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C02_697152.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11D-A059-01 7fd0974b-7ac4-4bdd-904d-234af0722313 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C02_697152.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11D-A059-01 7fd0974b-7ac4-4bdd-904d-234af0722313 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C02_697152.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11D-A059-01 7fd0974b-7ac4-4bdd-904d-234af0722313 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C02_697152.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11D-A059-01 7fd0974b-7ac4-4bdd-904d-234af0722313 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C02_697152.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11D-A059-01 7fd0974b-7ac4-4bdd-904d-234af0722313 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C02_697152.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11D-A060-02 d314298f-2baa-4bbe-bad1-17d6b2281101 Complete Clinical Set bio 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1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11D-A10P-05 aa7b6e86-b772-4c16-ac70-e975bc197dc3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11D-A10P-05 aa7b6e86-b772-4c16-ac70-e975bc197dc3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486021_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11D-A10P-05 aa7b6e86-b772-4c16-ac70-e975bc197dc3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486021_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11D-A10P-05 aa7b6e86-b772-4c16-ac70-e975bc197dc3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0B9-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11D-A10P-05 aa7b6e86-b772-4c16-ac70-e975bc197dc3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0B9-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11D-A128-09 cf599959-6aaf-48ea-8a15-8ef09163bad7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11R-A056-07 d5c39754-79c3-432c-b496-34a394662e17 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11R-A056-07 d5c39754-79c3-432c-b496-34a394662e17 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012155_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11R-A056-07 d5c39754-79c3-432c-b496-34a394662e17 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012155_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11R-A056-07 d5c39754-79c3-432c-b496-34a394662e17 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012155_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11R-A057-13 95ac7c7a-979d-45ce-a912-9f9b32c69345 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11R-A057-13 95ac7c7a-979d-45ce-a912-9f9b32c69345 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0B9-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11R-A057-13 95ac7c7a-979d-45ce-a912-9f9b32c69345 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0B9-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11W-A070-08 c989b3cb-f96d-49d7-ad9d-61863cbb6a1c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11W-A071-09 c57595bb-7953-4611-b0d1-3c2c40feb3b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11W-A071-09 c57595bb-7953-4611-b0d1-3c2c40feb3b9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11X-A072-08 11eb15ed-87a3-406d-992d-4609cae43a52 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-01A TCGA-BH-A0B9-01A-11X-A073-09 7cb85657-8532-4b7d-a3b2-b52bda3f9ed2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-10A TCGA-BH-A0B9-10A-01D-A059-01 8a6bccc5-23ab-4c2e-bcae-fab31ac7e275 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-10A TCGA-BH-A0B9-10A-01D-A059-01 8a6bccc5-23ab-4c2e-bcae-fab31ac7e275 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C05_697104.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0B9 TCGA-BH-A0B9-10A TCGA-BH-A0B9-10A-01D-A059-01 8a6bccc5-23ab-4c2e-bcae-fab31ac7e275 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C05_697104.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-10A TCGA-BH-A0B9-10A-01D-A059-01 8a6bccc5-23ab-4c2e-bcae-fab31ac7e275 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C05_697104.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-10A TCGA-BH-A0B9-10A-01D-A059-01 8a6bccc5-23ab-4c2e-bcae-fab31ac7e275 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C05_697104.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-10A TCGA-BH-A0B9-10A-01D-A059-01 8a6bccc5-23ab-4c2e-bcae-fab31ac7e275 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C05_697104.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-10A TCGA-BH-A0B9-10A-01D-A059-01 8a6bccc5-23ab-4c2e-bcae-fab31ac7e275 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C05_697104.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-10A TCGA-BH-A0B9-10A-01D-A059-01 8a6bccc5-23ab-4c2e-bcae-fab31ac7e275 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C05_697104.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-10A TCGA-BH-A0B9-10A-01D-A059-01 8a6bccc5-23ab-4c2e-bcae-fab31ac7e275 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C05_697104.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-10A TCGA-BH-A0B9-10A-01D-A060-02 e8f5c462-1f73-4df2-b2bb-9712cb03941c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-10A TCGA-BH-A0B9-10A-01D-A074-08 c4f4acdd-f390-44fd-a54a-e41af61e89ae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-10A TCGA-BH-A0B9-10A-01D-A075-09 c5a4738d-abe1-4f8e-ae52-a67bb6484a4f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-10A TCGA-BH-A0B9-10A-01D-A128-09 544469b8-d513-45df-9fe8-861fcb3b2ef1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-10A TCGA-BH-A0B9-10A-01W-A070-08 c81fa4d0-59e1-4d2b-88e3-49b5e159d1c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-10A TCGA-BH-A0B9-10A-01W-A071-09 02613b8d-b01c-401a-a0be-71f258dea92a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-10A TCGA-BH-A0B9-10A-01W-A071-09 02613b8d-b01c-401a-a0be-71f258dea92a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-10A TCGA-BH-A0B9-10A-01X-A072-08 21f1c351-12fd-450f-aab7-937a25ae6267 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0B9 TCGA-BH-A0B9-10A TCGA-BH-A0B9-10A-01X-A073-09 56200ba9-f34e-4f25-8f61-8ee3e7afba7d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0B9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11D-A058-05 1b0f1ed0-5687-4f44-840a-8dadf5ba3c2d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11D-A059-01 c4a07ce3-f12a-4e73-b791-6dfa05f4b435 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11D-A059-01 c4a07ce3-f12a-4e73-b791-6dfa05f4b435 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C06_697142.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11D-A059-01 c4a07ce3-f12a-4e73-b791-6dfa05f4b435 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C06_697142.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11D-A059-01 c4a07ce3-f12a-4e73-b791-6dfa05f4b435 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C06_697142.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11D-A059-01 c4a07ce3-f12a-4e73-b791-6dfa05f4b435 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C06_697142.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11D-A059-01 c4a07ce3-f12a-4e73-b791-6dfa05f4b435 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C06_697142.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11D-A059-01 c4a07ce3-f12a-4e73-b791-6dfa05f4b435 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C06_697142.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11D-A059-01 c4a07ce3-f12a-4e73-b791-6dfa05f4b435 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C06_697142.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11D-A059-01 c4a07ce3-f12a-4e73-b791-6dfa05f4b435 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C06_697142.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11D-A060-02 716cdbca-954e-4c2f-9bc2-d940c3b91fd3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11D-A074-08 90acd960-250e-4172-8051-319b23b454cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11D-A075-09 2f6c7e48-9bbf-47d7-bea8-a7bb06bec771 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11D-A10P-05 e7a24026-7e11-45fa-b342-20da391fde52 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11D-A10P-05 e7a24026-7e11-45fa-b342-20da391fde52 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486021_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11D-A10P-05 e7a24026-7e11-45fa-b342-20da391fde52 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486021_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11D-A10P-05 e7a24026-7e11-45fa-b342-20da391fde52 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0BA-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11D-A10P-05 e7a24026-7e11-45fa-b342-20da391fde52 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0BA-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11R-A056-07 651d6ca6-8e1c-4c5a-b7f4-1af98b415561 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11R-A056-07 651d6ca6-8e1c-4c5a-b7f4-1af98b415561 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012200_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11R-A056-07 651d6ca6-8e1c-4c5a-b7f4-1af98b415561 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012200_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11R-A056-07 651d6ca6-8e1c-4c5a-b7f4-1af98b415561 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012200_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11R-A056-07 651d6ca6-8e1c-4c5a-b7f4-1af98b415561 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480933.TCGA-BH-A0BA-01A-11R-A056-07.110318_SN744_0080_BB042NABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11R-A056-07 651d6ca6-8e1c-4c5a-b7f4-1af98b415561 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480946.TCGA-BH-A0BA-01A-11R-A056-07.110318_SN744_0080_BB042NABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11R-A056-07 651d6ca6-8e1c-4c5a-b7f4-1af98b415561 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480996.TCGA-BH-A0BA-01A-11R-A056-07.110318_SN744_0080_BB042NABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11R-A057-13 ad73e064-d854-47fb-90b7-dfa2be58f119 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11R-A057-13 ad73e064-d854-47fb-90b7-dfa2be58f119 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0BA-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11R-A057-13 ad73e064-d854-47fb-90b7-dfa2be58f119 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0BA-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11W-A070-08 58026c20-6e12-40e9-9720-5d1388655805 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11W-A071-09 897874e6-cf93-4b4b-8b66-8914d13036aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11W-A071-09 897874e6-cf93-4b4b-8b66-8914d13036aa Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11X-A072-08 cefb0cb4-d8f9-4b4f-8ab7-3c61f80e27d2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-01A TCGA-BH-A0BA-01A-11X-A073-09 9af47970-f29c-4940-be01-f358eaff2392 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-10A TCGA-BH-A0BA-10A-01D-A059-01 3805680c-09de-496e-9354-c3ddccc1f353 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-10A TCGA-BH-A0BA-10A-01D-A059-01 3805680c-09de-496e-9354-c3ddccc1f353 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B04_697100.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0BA TCGA-BH-A0BA-10A TCGA-BH-A0BA-10A-01D-A059-01 3805680c-09de-496e-9354-c3ddccc1f353 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B04_697100.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-10A TCGA-BH-A0BA-10A-01D-A059-01 3805680c-09de-496e-9354-c3ddccc1f353 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B04_697100.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-10A TCGA-BH-A0BA-10A-01D-A059-01 3805680c-09de-496e-9354-c3ddccc1f353 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B04_697100.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-10A TCGA-BH-A0BA-10A-01D-A059-01 3805680c-09de-496e-9354-c3ddccc1f353 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B04_697100.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-10A TCGA-BH-A0BA-10A-01D-A059-01 3805680c-09de-496e-9354-c3ddccc1f353 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B04_697100.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-10A TCGA-BH-A0BA-10A-01D-A059-01 3805680c-09de-496e-9354-c3ddccc1f353 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B04_697100.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-10A TCGA-BH-A0BA-10A-01D-A059-01 3805680c-09de-496e-9354-c3ddccc1f353 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B04_697100.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-10A TCGA-BH-A0BA-10A-01D-A060-02 62310507-9217-4dc3-88fb-e0abbf5210db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-10A TCGA-BH-A0BA-10A-01D-A074-08 a1c2d32f-207e-45dd-ad96-33ad4346b808 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-10A TCGA-BH-A0BA-10A-01D-A075-09 c38cdec1-0075-4d65-a42e-99c00d93213a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-10A TCGA-BH-A0BA-10A-01W-A070-08 b5fd5634-f280-47a3-80bc-ace675f1e1b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-10A TCGA-BH-A0BA-10A-01W-A071-09 eb7e283b-158b-4b73-8460-4d89aad28b76 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-10A TCGA-BH-A0BA-10A-01W-A071-09 eb7e283b-158b-4b73-8460-4d89aad28b76 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-10A TCGA-BH-A0BA-10A-01X-A072-08 ed264702-8bf5-48fe-a390-39169735224b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-10A TCGA-BH-A0BA-10A-01X-A073-09 ed4e7749-4398-42fe-a5ce-1e6d06b0d100 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-11A TCGA-BH-A0BA-11A-22D-A091-02 e4e16cd4-412f-4dc3-9f35-42e237b465dd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-11A TCGA-BH-A0BA-11A-22D-A092-01 4330f11e-789b-406e-9756-833915a1e5bb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-11A TCGA-BH-A0BA-11A-22D-A092-01 4330f11e-789b-406e-9756-833915a1e5bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H01_729582.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0BA TCGA-BH-A0BA-11A TCGA-BH-A0BA-11A-22D-A092-01 4330f11e-789b-406e-9756-833915a1e5bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H01_729582.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-11A TCGA-BH-A0BA-11A-22D-A092-01 4330f11e-789b-406e-9756-833915a1e5bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H01_729582.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-11A TCGA-BH-A0BA-11A-22D-A092-01 4330f11e-789b-406e-9756-833915a1e5bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H01_729582.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-11A TCGA-BH-A0BA-11A-22D-A092-01 4330f11e-789b-406e-9756-833915a1e5bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H01_729582.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-11A TCGA-BH-A0BA-11A-22D-A092-01 4330f11e-789b-406e-9756-833915a1e5bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H01_729582.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-11A TCGA-BH-A0BA-11A-22D-A092-01 4330f11e-789b-406e-9756-833915a1e5bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H01_729582.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-11A TCGA-BH-A0BA-11A-22D-A092-01 4330f11e-789b-406e-9756-833915a1e5bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H01_729582.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-11A TCGA-BH-A0BA-11A-22D-A093-05 a0921dde-8d16-4664-96a3-ac0613d9fd7e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-11A TCGA-BH-A0BA-11A-22D-A100-09 8ad1a480-ea92-4790-9e8e-cfcb884bac94 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-11A TCGA-BH-A0BA-11A-22D-A10Q-05 a36c2184-ebcc-4c82-bb3c-6898a793579c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-11A TCGA-BH-A0BA-11A-22D-A10Q-05 a36c2184-ebcc-4c82-bb3c-6898a793579c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486011_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-11A TCGA-BH-A0BA-11A-22D-A10Q-05 a36c2184-ebcc-4c82-bb3c-6898a793579c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486011_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-11A TCGA-BH-A0BA-11A-22D-A10Q-05 a36c2184-ebcc-4c82-bb3c-6898a793579c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0BA-11A-22D-A10Q-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-11A TCGA-BH-A0BA-11A-22D-A10Q-05 a36c2184-ebcc-4c82-bb3c-6898a793579c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0BA-11A-22D-A10Q-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-11A TCGA-BH-A0BA-11A-22R-A089-07 7b658311-3db5-460b-a667-8f5f4bc0a146 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-11A TCGA-BH-A0BA-11A-22R-A089-07 7b658311-3db5-460b-a667-8f5f4bc0a146 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012670_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 61 02-NOV-10 12.30.07.283000000 AM TCGA-BH-A0BA TCGA-BH-A0BA-11A TCGA-BH-A0BA-11A-22R-A089-07 7b658311-3db5-460b-a667-8f5f4bc0a146 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012670_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 61 02-NOV-10 12.25.38.097000000 AM TCGA-BH-A0BA TCGA-BH-A0BA-11A TCGA-BH-A0BA-11A-22R-A089-07 7b658311-3db5-460b-a667-8f5f4bc0a146 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012670_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 61 02-NOV-10 12.26.20.805000000 AM TCGA-BH-A0BA TCGA-BH-A0BA-11A TCGA-BH-A0BA-11A-22R-A090-13 1e7669fd-5f36-4efb-904f-167f5bf2c659 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-11A TCGA-BH-A0BA-11A-22R-A19E-07 3bfd1811-bd2a-439d-8dde-237abcf855af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-11A TCGA-BH-A0BA-11A-22W-A100-09 931205be-0a3e-4a3a-a77b-0583f104173f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-11A TCGA-BH-A0BA-11A-22W-A100-09 931205be-0a3e-4a3a-a77b-0583f104173f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BA TCGA-BH-A0BA-11A TCGA-BH-A0BA-11A-22X-A100-09 b805c1ab-484b-44c3-a652-d8d9905edb85 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22D-A086-02 7f32ae8d-0d53-4ee5-a897-71fe97715b3f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22D-A087-01 0ac2333e-89ba-4790-8104-87de2772833c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22D-A087-01 0ac2333e-89ba-4790-8104-87de2772833c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G10_698164.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22D-A087-01 0ac2333e-89ba-4790-8104-87de2772833c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G10_698164.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22D-A087-01 0ac2333e-89ba-4790-8104-87de2772833c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G10_698164.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22D-A087-01 0ac2333e-89ba-4790-8104-87de2772833c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G10_698164.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22D-A087-01 0ac2333e-89ba-4790-8104-87de2772833c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G10_698164.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22D-A087-01 0ac2333e-89ba-4790-8104-87de2772833c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G10_698164.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22D-A087-01 0ac2333e-89ba-4790-8104-87de2772833c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G10_698164.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22D-A087-01 0ac2333e-89ba-4790-8104-87de2772833c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G10_698164.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22D-A088-05 1d80b139-e8c9-4dd8-a0cf-a9ddcad22dd6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22D-A099-09 ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22D-A099-09 ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22D-A099-09 ca5a91e0-d201-487b-9ea8-bad7d3f9d2dc Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22D-A10P-05 65273a54-85a2-4f90-a0a5-6cb63a438a51 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22D-A10P-05 65273a54-85a2-4f90-a0a5-6cb63a438a51 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791006_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22D-A10P-05 65273a54-85a2-4f90-a0a5-6cb63a438a51 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791006_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22D-A10P-05 65273a54-85a2-4f90-a0a5-6cb63a438a51 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-BH-A0BC-01A-22D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22D-A10P-05 65273a54-85a2-4f90-a0a5-6cb63a438a51 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-BH-A0BC-01A-22D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22R-A084-07 9fc55d1c-ecb6-4406-bf25-34f59a0dcfec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22R-A084-07 9fc55d1c-ecb6-4406-bf25-34f59a0dcfec Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012589_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22R-A084-07 9fc55d1c-ecb6-4406-bf25-34f59a0dcfec Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012589_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22R-A084-07 9fc55d1c-ecb6-4406-bf25-34f59a0dcfec Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012589_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22R-A084-07 9fc55d1c-ecb6-4406-bf25-34f59a0dcfec RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442801.TCGA-BH-A0BC-01A-22R-A084-07.110325_UNC13-SN749_0048_BB02DUABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22R-A084-07 9fc55d1c-ecb6-4406-bf25-34f59a0dcfec RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442874.TCGA-BH-A0BC-01A-22R-A084-07.110325_UNC13-SN749_0048_BB02DUABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22R-A084-07 9fc55d1c-ecb6-4406-bf25-34f59a0dcfec RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442948.TCGA-BH-A0BC-01A-22R-A084-07.110325_UNC13-SN749_0048_BB02DUABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22R-A085-13 695b8f18-1a16-4243-b77f-b85295adaa85 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22R-A085-13 695b8f18-1a16-4243-b77f-b85295adaa85 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0BC-01A-22R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22R-A085-13 695b8f18-1a16-4243-b77f-b85295adaa85 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0BC-01A-22R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22W-A097-09 95ce82b9-c381-44a9-9f63-db8f9c2fe0bc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-01A TCGA-BH-A0BC-01A-22X-A098-09 9c7dea68-5790-4d4c-b3c8-831f01ef682c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-10A TCGA-BH-A0BC-10A-01D-A086-02 35ed61c8-1ed8-477c-87ae-22389f0ff063 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-10A TCGA-BH-A0BC-10A-01D-A087-01 55db4c0f-5abc-43e5-8ba6-fbc4da0f6c75 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-10A TCGA-BH-A0BC-10A-01D-A087-01 55db4c0f-5abc-43e5-8ba6-fbc4da0f6c75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D03_697980.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-BH-A0BC TCGA-BH-A0BC-10A TCGA-BH-A0BC-10A-01D-A087-01 55db4c0f-5abc-43e5-8ba6-fbc4da0f6c75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D03_697980.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-10A TCGA-BH-A0BC-10A-01D-A087-01 55db4c0f-5abc-43e5-8ba6-fbc4da0f6c75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D03_697980.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-10A TCGA-BH-A0BC-10A-01D-A087-01 55db4c0f-5abc-43e5-8ba6-fbc4da0f6c75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D03_697980.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-10A TCGA-BH-A0BC-10A-01D-A087-01 55db4c0f-5abc-43e5-8ba6-fbc4da0f6c75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D03_697980.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-10A TCGA-BH-A0BC-10A-01D-A087-01 55db4c0f-5abc-43e5-8ba6-fbc4da0f6c75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D03_697980.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-10A TCGA-BH-A0BC-10A-01D-A087-01 55db4c0f-5abc-43e5-8ba6-fbc4da0f6c75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D03_697980.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-10A TCGA-BH-A0BC-10A-01D-A087-01 55db4c0f-5abc-43e5-8ba6-fbc4da0f6c75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D03_697980.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-10A TCGA-BH-A0BC-10A-01D-A099-09 b1d4c4f2-a008-4a03-9885-33058dd170e7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-10A TCGA-BH-A0BC-10A-01D-A099-09 b1d4c4f2-a008-4a03-9885-33058dd170e7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-10A TCGA-BH-A0BC-10A-01D-A099-09 b1d4c4f2-a008-4a03-9885-33058dd170e7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-10A TCGA-BH-A0BC-10A-01W-A097-09 6db498d7-be78-45eb-8379-a1115aa3dd4d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-10A TCGA-BH-A0BC-10A-01X-A098-09 4ee1b46b-2905-475a-83fd-ab1d280a2300 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22D-A091-02 77b61323-4866-4862-bc81-059539ba71af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22D-A092-01 1136724d-7446-4c8f-bb61-20eb751ecf2e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22D-A092-01 1136724d-7446-4c8f-bb61-20eb751ecf2e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G12_729710.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 72 07-DEC-11 11.28.46.806000000 AM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22D-A092-01 1136724d-7446-4c8f-bb61-20eb751ecf2e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G12_729710.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 72 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22D-A092-01 1136724d-7446-4c8f-bb61-20eb751ecf2e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G12_729710.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 72 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22D-A092-01 1136724d-7446-4c8f-bb61-20eb751ecf2e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G12_729710.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 72 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22D-A092-01 1136724d-7446-4c8f-bb61-20eb751ecf2e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G12_729710.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 72 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22D-A092-01 1136724d-7446-4c8f-bb61-20eb751ecf2e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G12_729710.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 72 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22D-A092-01 1136724d-7446-4c8f-bb61-20eb751ecf2e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G12_729710.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 72 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22D-A092-01 1136724d-7446-4c8f-bb61-20eb751ecf2e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G12_729710.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 72 07-DEC-11 01.00.08.712000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22D-A093-05 f723c60e-e9cb-4c80-9823-3370610d1691 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22D-A093-05 f723c60e-e9cb-4c80-9823-3370610d1691 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.2.1.0/6005486025_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.2.1.0 72 07-NOV-11 04.30.18.051000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22D-A093-05 f723c60e-e9cb-4c80-9823-3370610d1691 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.2.1.0/6005486025_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.2.1.0 72 07-NOV-11 04.30.18.051000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22D-A093-05 f723c60e-e9cb-4c80-9823-3370610d1691 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.2.1.0/jhu-usc.edu_BRCA.HumanMethylation450.2.lvl-2.TCGA-BH-A0BC-11A-22D-A093-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.2.1.0 72 07-NOV-11 05.12.19.619000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22D-A093-05 f723c60e-e9cb-4c80-9823-3370610d1691 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.2.1.0/jhu-usc.edu_BRCA.HumanMethylation450.2.lvl-3.TCGA-BH-A0BC-11A-22D-A093-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.2.1.0 72 07-NOV-11 05.48.35.207000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22D-A10E-09 05e9d24e-2e5c-47ab-9a0e-9691ab47d808 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22D-A10E-09 05e9d24e-2e5c-47ab-9a0e-9691ab47d808 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22D-A10E-09 05e9d24e-2e5c-47ab-9a0e-9691ab47d808 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22R-A089-07 32336250-dc07-4e96-9a6c-3c7094fd5342 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22R-A089-07 32336250-dc07-4e96-9a6c-3c7094fd5342 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012671_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22R-A089-07 32336250-dc07-4e96-9a6c-3c7094fd5342 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012671_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22R-A089-07 32336250-dc07-4e96-9a6c-3c7094fd5342 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012671_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22R-A089-07 32336250-dc07-4e96-9a6c-3c7094fd5342 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_829128.TCGA-BH-A0BC-11A-22R-A089-07.110909_UNC9-SN296_0240_BD0DDBABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22R-A089-07 32336250-dc07-4e96-9a6c-3c7094fd5342 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_829219.TCGA-BH-A0BC-11A-22R-A089-07.110909_UNC9-SN296_0240_BD0DDBABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22R-A089-07 32336250-dc07-4e96-9a6c-3c7094fd5342 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_829382.TCGA-BH-A0BC-11A-22R-A089-07.110909_UNC9-SN296_0240_BD0DDBABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22R-A090-13 38d89ab0-eed8-48c8-b4f7-39b94e9a5849 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22R-A090-13 38d89ab0-eed8-48c8-b4f7-39b94e9a5849 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0BC-11A-22R-A090-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22R-A090-13 38d89ab0-eed8-48c8-b4f7-39b94e9a5849 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0BC-11A-22R-A090-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22W-A10F-09 7aa075f7-b119-47af-877f-6f65633cadd7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0BC TCGA-BH-A0BC-11A TCGA-BH-A0BC-11A-22X-A10F-09 e468f64c-dd3c-4a45-8004-afdae1b37cdf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-01A TCGA-BH-A0BD-01A-11D-A032-05 86e11727-f890-4ae6-80c1-33cd33c44b88 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-01A TCGA-BH-A0BD-01A-11D-A032-05 86e11727-f890-4ae6-80c1-33cd33c44b88 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-BH-A0BD-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-01A TCGA-BH-A0BD-01A-11D-A032-05 86e11727-f890-4ae6-80c1-33cd33c44b88 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-BH-A0BD-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-01A TCGA-BH-A0BD-01A-11D-A032-05 86e11727-f890-4ae6-80c1-33cd33c44b88 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-BH-A0BD-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-01A TCGA-BH-A0BD-01A-11D-A033-02 51e4c58a-21c5-494c-950a-3d4b6b05cf35 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-01A TCGA-BH-A0BD-01A-11D-A036-01 14d1ebac-ab78-4daf-b4bf-158610be3948 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-01A TCGA-BH-A0BD-01A-11D-A036-01 14d1ebac-ab78-4daf-b4bf-158610be3948 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D07_667194.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-BH-A0BD TCGA-BH-A0BD-01A TCGA-BH-A0BD-01A-11D-A036-01 14d1ebac-ab78-4daf-b4bf-158610be3948 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D07_667194.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-01A TCGA-BH-A0BD-01A-11D-A036-01 14d1ebac-ab78-4daf-b4bf-158610be3948 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D07_667194.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-01A TCGA-BH-A0BD-01A-11D-A036-01 14d1ebac-ab78-4daf-b4bf-158610be3948 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D07_667194.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-01A TCGA-BH-A0BD-01A-11D-A036-01 14d1ebac-ab78-4daf-b4bf-158610be3948 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D07_667194.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-01A TCGA-BH-A0BD-01A-11D-A036-01 14d1ebac-ab78-4daf-b4bf-158610be3948 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D07_667194.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-01A TCGA-BH-A0BD-01A-11D-A036-01 14d1ebac-ab78-4daf-b4bf-158610be3948 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D07_667194.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-01A TCGA-BH-A0BD-01A-11D-A036-01 14d1ebac-ab78-4daf-b4bf-158610be3948 SNP Genome_Wide_SNP_6 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1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-10A TCGA-BH-A0BD-10A-01D-A031-02 40f37241-9af4-4866-b134-e945597de826 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-10A TCGA-BH-A0BD-10A-01D-A037-01 aaca2d97-53a4-469a-aca0-a8ccc3018496 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-10A TCGA-BH-A0BD-10A-01D-A037-01 aaca2d97-53a4-469a-aca0-a8ccc3018496 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D05_667104.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-BH-A0BD TCGA-BH-A0BD-10A TCGA-BH-A0BD-10A-01D-A037-01 aaca2d97-53a4-469a-aca0-a8ccc3018496 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D05_667104.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-10A TCGA-BH-A0BD-10A-01D-A037-01 aaca2d97-53a4-469a-aca0-a8ccc3018496 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D05_667104.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-10A TCGA-BH-A0BD-10A-01D-A037-01 aaca2d97-53a4-469a-aca0-a8ccc3018496 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D05_667104.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-10A TCGA-BH-A0BD-10A-01D-A037-01 aaca2d97-53a4-469a-aca0-a8ccc3018496 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D05_667104.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-10A TCGA-BH-A0BD-10A-01D-A037-01 aaca2d97-53a4-469a-aca0-a8ccc3018496 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D05_667104.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-10A TCGA-BH-A0BD-10A-01D-A046-08 9a241564-1184-41a6-a580-5a31ebe1ac9f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-10A TCGA-BH-A0BD-10A-01D-A047-09 90a1f494-a2d7-4413-aac9-ab7851adaf27 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-10A TCGA-BH-A0BD-10A-01W-A053-08 18634945-c635-4c60-a716-f0dc6c2202f5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-10A TCGA-BH-A0BD-10A-01W-A055-09 0558481f-51c7-4181-9032-e02c3e8e265d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-10A TCGA-BH-A0BD-10A-01W-A055-09 0558481f-51c7-4181-9032-e02c3e8e265d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-10A TCGA-BH-A0BD-10A-01W-A055-09 0558481f-51c7-4181-9032-e02c3e8e265d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-10A TCGA-BH-A0BD-10A-01X-A052-08 dc27f5d0-8f1b-4cbe-a628-f5350457b658 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0BD TCGA-BH-A0BD-10A TCGA-BH-A0BD-10A-01X-A054-09 c637fda7-e2a0-43ca-a73e-7ec4eb83378a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21D-A12M-02 b0440629-421e-4214-934f-f7aca6dfcba9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21D-A12N-01 ce3c088b-0131-49df-a2e7-f42a2712849c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21D-A12N-01 ce3c088b-0131-49df-a2e7-f42a2712849c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D12_748030.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21D-A12N-01 ce3c088b-0131-49df-a2e7-f42a2712849c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D12_748030.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21D-A12N-01 ce3c088b-0131-49df-a2e7-f42a2712849c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D12_748030.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21D-A12N-01 ce3c088b-0131-49df-a2e7-f42a2712849c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D12_748030.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21D-A12N-01 ce3c088b-0131-49df-a2e7-f42a2712849c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D12_748030.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21D-A12N-01 ce3c088b-0131-49df-a2e7-f42a2712849c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D12_748030.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21D-A12N-01 ce3c088b-0131-49df-a2e7-f42a2712849c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D12_748030.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21D-A12N-01 ce3c088b-0131-49df-a2e7-f42a2712849c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D12_748030.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21D-A12Q-09 39221056-704b-4a23-9b8d-3178dd9e790d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21D-A12Q-09 39221056-704b-4a23-9b8d-3178dd9e790d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21D-A12R-05 c237ade2-7292-497a-b518-1bffac865140 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21D-A12R-05 c237ade2-7292-497a-b518-1bffac865140 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324037_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21D-A12R-05 c237ade2-7292-497a-b518-1bffac865140 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324037_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21D-A12R-05 c237ade2-7292-497a-b518-1bffac865140 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-BH-A0BF-01A-21D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21D-A12R-05 c237ade2-7292-497a-b518-1bffac865140 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-BH-A0BF-01A-21D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21R-A12O-13 4e872aac-aa3b-4f0a-b263-ace33199d82a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21R-A12O-13 4e872aac-aa3b-4f0a-b263-ace33199d82a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BF-01A-21R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21R-A12O-13 4e872aac-aa3b-4f0a-b263-ace33199d82a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BF-01A-21R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21R-A12P-07 3491d44a-675b-4510-8699-2ee83f960d02 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21R-A12P-07 3491d44a-675b-4510-8699-2ee83f960d02 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013056_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21R-A12P-07 3491d44a-675b-4510-8699-2ee83f960d02 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013056_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21R-A12P-07 3491d44a-675b-4510-8699-2ee83f960d02 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013056_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21R-A12P-07 3491d44a-675b-4510-8699-2ee83f960d02 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_438061.TCGA-BH-A0BF-01A-21R-A12P-07.110725_UNC11-SN627_0128_AB0AYGABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21R-A12P-07 3491d44a-675b-4510-8699-2ee83f960d02 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_438087.TCGA-BH-A0BF-01A-21R-A12P-07.110725_UNC11-SN627_0128_AB0AYGABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21R-A12P-07 3491d44a-675b-4510-8699-2ee83f960d02 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_438333.TCGA-BH-A0BF-01A-21R-A12P-07.110725_UNC11-SN627_0128_AB0AYGABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-01A TCGA-BH-A0BF-01A-21W-A14O-09 40d6625c-9806-468e-8f6f-2cbcc3a83943 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-11A TCGA-BH-A0BF-11A-31D-A12M-02 d27074cc-1569-425e-9c49-c8ffb296614f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-11A TCGA-BH-A0BF-11A-31D-A12N-01 984677e4-0790-48e7-b729-0de3dd9d8f74 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-11A TCGA-BH-A0BF-11A-31D-A12N-01 984677e4-0790-48e7-b729-0de3dd9d8f74 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B08_747996.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0BF TCGA-BH-A0BF-11A TCGA-BH-A0BF-11A-31D-A12N-01 984677e4-0790-48e7-b729-0de3dd9d8f74 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B08_747996.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-11A TCGA-BH-A0BF-11A-31D-A12N-01 984677e4-0790-48e7-b729-0de3dd9d8f74 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B08_747996.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-11A TCGA-BH-A0BF-11A-31D-A12N-01 984677e4-0790-48e7-b729-0de3dd9d8f74 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B08_747996.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-11A TCGA-BH-A0BF-11A-31D-A12N-01 984677e4-0790-48e7-b729-0de3dd9d8f74 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B08_747996.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-11A TCGA-BH-A0BF-11A-31D-A12N-01 984677e4-0790-48e7-b729-0de3dd9d8f74 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B08_747996.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-11A TCGA-BH-A0BF-11A-31D-A12N-01 984677e4-0790-48e7-b729-0de3dd9d8f74 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B08_747996.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-11A TCGA-BH-A0BF-11A-31D-A12N-01 984677e4-0790-48e7-b729-0de3dd9d8f74 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B08_747996.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-11A TCGA-BH-A0BF-11A-31D-A12Q-09 df0f49fe-e68c-42d3-8dbf-fc08672ac4fb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-11A TCGA-BH-A0BF-11A-31D-A12Q-09 df0f49fe-e68c-42d3-8dbf-fc08672ac4fb Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-11A TCGA-BH-A0BF-11A-31D-A12R-05 6546d74a-079f-460e-9833-8a91a0ccf52f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-11A TCGA-BH-A0BF-11A-31D-A12R-05 6546d74a-079f-460e-9833-8a91a0ccf52f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324070_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-11A TCGA-BH-A0BF-11A-31D-A12R-05 6546d74a-079f-460e-9833-8a91a0ccf52f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324070_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-11A TCGA-BH-A0BF-11A-31D-A12R-05 6546d74a-079f-460e-9833-8a91a0ccf52f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-BH-A0BF-11A-31D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-11A TCGA-BH-A0BF-11A-31D-A12R-05 6546d74a-079f-460e-9833-8a91a0ccf52f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-BH-A0BF-11A-31D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-BH-A0BF TCGA-BH-A0BF-11A TCGA-BH-A0BF-11A-31W-A14O-09 963b8561-bae9-4681-af6f-df6fd7c95bc6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11D-A10X-02 63b15d27-ca83-40f3-afe2-6b881fb15d6f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11D-A10Y-09 923ee16a-2c42-46ee-b2cb-82075f2dd603 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11D-A10Y-09 923ee16a-2c42-46ee-b2cb-82075f2dd603 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11D-A111-01 e0ad6225-f660-4276-9609-f8fc0889a61c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11D-A111-01 e0ad6225-f660-4276-9609-f8fc0889a61c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B09_735026.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11D-A111-01 e0ad6225-f660-4276-9609-f8fc0889a61c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B09_735026.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11D-A111-01 e0ad6225-f660-4276-9609-f8fc0889a61c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B09_735026.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11D-A111-01 e0ad6225-f660-4276-9609-f8fc0889a61c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B09_735026.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11D-A111-01 e0ad6225-f660-4276-9609-f8fc0889a61c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B09_735026.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11D-A111-01 e0ad6225-f660-4276-9609-f8fc0889a61c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B09_735026.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11D-A111-01 e0ad6225-f660-4276-9609-f8fc0889a61c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B09_735026.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11D-A111-01 e0ad6225-f660-4276-9609-f8fc0889a61c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B09_735026.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11D-A112-05 1e28a208-ab20-436c-81a4-f84dc0e9fe85 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11D-A112-05 1e28a208-ab20-436c-81a4-f84dc0e9fe85 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-BH-A0BG-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11D-A112-05 1e28a208-ab20-436c-81a4-f84dc0e9fe85 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-BH-A0BG-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11D-A112-05 1e28a208-ab20-436c-81a4-f84dc0e9fe85 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-BH-A0BG-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11R-A114-13 2dab60d2-25d5-4129-bc94-2007caa7ccfc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11R-A114-13 2dab60d2-25d5-4129-bc94-2007caa7ccfc miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BG-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11R-A114-13 2dab60d2-25d5-4129-bc94-2007caa7ccfc miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BG-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11R-A115-07 70b29dd6-1688-4510-94dd-5fcb26a1a908 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11R-A115-07 70b29dd6-1688-4510-94dd-5fcb26a1a908 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012741_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11R-A115-07 70b29dd6-1688-4510-94dd-5fcb26a1a908 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012741_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11R-A115-07 70b29dd6-1688-4510-94dd-5fcb26a1a908 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012741_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11R-A115-07 70b29dd6-1688-4510-94dd-5fcb26a1a908 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_449360.TCGA-BH-A0BG-01A-11R-A115-07.110608_UNC13-SN749_0073_BD0CV8ABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11R-A115-07 70b29dd6-1688-4510-94dd-5fcb26a1a908 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_449409.TCGA-BH-A0BG-01A-11R-A115-07.110608_UNC13-SN749_0073_BD0CV8ABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11R-A115-07 70b29dd6-1688-4510-94dd-5fcb26a1a908 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_449443.TCGA-BH-A0BG-01A-11R-A115-07.110608_UNC13-SN749_0073_BD0CV8ABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-01A TCGA-BH-A0BG-01A-11W-A12T-09 2ba84f90-1e24-412f-b5d4-ca8bfd362734 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-10A TCGA-BH-A0BG-10A-01D-A10Z-02 b7978678-d750-44b7-854b-d562474bb1ff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-10A TCGA-BH-A0BG-10A-01D-A110-09 483a4feb-931f-40f8-964d-29104030ebe7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-10A TCGA-BH-A0BG-10A-01D-A110-09 483a4feb-931f-40f8-964d-29104030ebe7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-10A TCGA-BH-A0BG-10A-01D-A113-01 d83abbea-e1bc-4b5b-b17f-8ad294a3e3c6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-10A TCGA-BH-A0BG-10A-01D-A113-01 d83abbea-e1bc-4b5b-b17f-8ad294a3e3c6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B02_735172.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0BG TCGA-BH-A0BG-10A TCGA-BH-A0BG-10A-01D-A113-01 d83abbea-e1bc-4b5b-b17f-8ad294a3e3c6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B02_735172.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-10A TCGA-BH-A0BG-10A-01D-A113-01 d83abbea-e1bc-4b5b-b17f-8ad294a3e3c6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B02_735172.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-10A TCGA-BH-A0BG-10A-01D-A113-01 d83abbea-e1bc-4b5b-b17f-8ad294a3e3c6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B02_735172.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-10A TCGA-BH-A0BG-10A-01D-A113-01 d83abbea-e1bc-4b5b-b17f-8ad294a3e3c6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B02_735172.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-10A TCGA-BH-A0BG-10A-01D-A113-01 d83abbea-e1bc-4b5b-b17f-8ad294a3e3c6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B02_735172.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-10A TCGA-BH-A0BG-10A-01D-A113-01 d83abbea-e1bc-4b5b-b17f-8ad294a3e3c6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B02_735172.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-10A TCGA-BH-A0BG-10A-01D-A113-01 d83abbea-e1bc-4b5b-b17f-8ad294a3e3c6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B02_735172.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0BG TCGA-BH-A0BG-10A TCGA-BH-A0BG-10A-01W-A12U-09 0067afac-d3c7-4a34-bd4a-0fbc36d9f4a8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11D-A058-05 71213ae5-0aa7-4caf-ad3c-3453ea6c9ebd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11D-A059-01 e66a0d0b-c237-41dc-8411-beeee54998ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11D-A059-01 e66a0d0b-c237-41dc-8411-beeee54998ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C10_697206.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11D-A059-01 e66a0d0b-c237-41dc-8411-beeee54998ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C10_697206.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11D-A059-01 e66a0d0b-c237-41dc-8411-beeee54998ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C10_697206.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11D-A059-01 e66a0d0b-c237-41dc-8411-beeee54998ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C10_697206.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11D-A059-01 e66a0d0b-c237-41dc-8411-beeee54998ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C10_697206.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11D-A059-01 e66a0d0b-c237-41dc-8411-beeee54998ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C10_697206.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11D-A059-01 e66a0d0b-c237-41dc-8411-beeee54998ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C10_697206.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11D-A059-01 e66a0d0b-c237-41dc-8411-beeee54998ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C10_697206.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11D-A060-02 15909b1b-0ff9-4768-b5e7-7567002b1972 Complete Clinical Set bio 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1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11D-A10P-05 33b442fd-1b42-4e8f-a464-1fbe3491e3a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11D-A10P-05 33b442fd-1b42-4e8f-a464-1fbe3491e3a6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486014_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11D-A10P-05 33b442fd-1b42-4e8f-a464-1fbe3491e3a6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486014_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11D-A10P-05 33b442fd-1b42-4e8f-a464-1fbe3491e3a6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0BJ-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11D-A10P-05 33b442fd-1b42-4e8f-a464-1fbe3491e3a6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0BJ-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11R-A056-07 224cbe13-ebf8-41eb-ab1c-1d6792a66774 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11R-A056-07 224cbe13-ebf8-41eb-ab1c-1d6792a66774 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012206_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11R-A056-07 224cbe13-ebf8-41eb-ab1c-1d6792a66774 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012206_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11R-A056-07 224cbe13-ebf8-41eb-ab1c-1d6792a66774 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012206_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11R-A056-07 224cbe13-ebf8-41eb-ab1c-1d6792a66774 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480921.TCGA-BH-A0BJ-01A-11R-A056-07.110318_SN744_0080_BB042NABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11R-A056-07 224cbe13-ebf8-41eb-ab1c-1d6792a66774 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480936.TCGA-BH-A0BJ-01A-11R-A056-07.110318_SN744_0080_BB042NABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11R-A056-07 224cbe13-ebf8-41eb-ab1c-1d6792a66774 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480955.TCGA-BH-A0BJ-01A-11R-A056-07.110318_SN744_0080_BB042NABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11R-A057-13 5feb21e9-799b-4d56-b48b-6cdb9014e393 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11R-A057-13 5feb21e9-799b-4d56-b48b-6cdb9014e393 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0BJ-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11R-A057-13 5feb21e9-799b-4d56-b48b-6cdb9014e393 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0BJ-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11W-A070-08 eabceeb7-a9f4-468e-88d3-566a7a4f486c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11W-A071-09 a774aaa7-e53e-4b05-8b5a-08e9949d5fb1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11W-A071-09 a774aaa7-e53e-4b05-8b5a-08e9949d5fb1 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11X-A072-08 0e0b9d5c-39b7-402e-abc5-c8145bce5bef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-01A TCGA-BH-A0BJ-01A-11X-A073-09 0e2f1c8d-894c-49a8-9967-9cd72497c7ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-10A TCGA-BH-A0BJ-10A-01D-A059-01 4bb9ada7-5007-4d19-958d-42df7b3c77bc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-10A TCGA-BH-A0BJ-10A-01D-A059-01 4bb9ada7-5007-4d19-958d-42df7b3c77bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D01_697136.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0BJ TCGA-BH-A0BJ-10A TCGA-BH-A0BJ-10A-01D-A059-01 4bb9ada7-5007-4d19-958d-42df7b3c77bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D01_697136.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-10A TCGA-BH-A0BJ-10A-01D-A059-01 4bb9ada7-5007-4d19-958d-42df7b3c77bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D01_697136.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-10A TCGA-BH-A0BJ-10A-01D-A059-01 4bb9ada7-5007-4d19-958d-42df7b3c77bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D01_697136.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-10A TCGA-BH-A0BJ-10A-01D-A059-01 4bb9ada7-5007-4d19-958d-42df7b3c77bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D01_697136.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-10A TCGA-BH-A0BJ-10A-01D-A059-01 4bb9ada7-5007-4d19-958d-42df7b3c77bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D01_697136.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-10A TCGA-BH-A0BJ-10A-01D-A059-01 4bb9ada7-5007-4d19-958d-42df7b3c77bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D01_697136.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-10A TCGA-BH-A0BJ-10A-01D-A059-01 4bb9ada7-5007-4d19-958d-42df7b3c77bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D01_697136.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-10A TCGA-BH-A0BJ-10A-01D-A060-02 4510e1d4-1cde-4b0e-8cfb-23b50ba9dd3e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-10A TCGA-BH-A0BJ-10A-01D-A074-08 b24950eb-77e6-4de5-947b-6e17ea8a0408 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-10A TCGA-BH-A0BJ-10A-01D-A075-09 2aad87f2-5a55-48d9-96ef-5e33870008ee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-10A TCGA-BH-A0BJ-10A-01W-A070-08 5eef4740-6238-43be-957d-9c1641a6c9a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-10A TCGA-BH-A0BJ-10A-01W-A071-09 43287256-9ad4-437b-932d-a0e2aef9ae2b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-10A TCGA-BH-A0BJ-10A-01W-A071-09 43287256-9ad4-437b-932d-a0e2aef9ae2b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-10A TCGA-BH-A0BJ-10A-01X-A072-08 4d8bf3d9-1e46-46fc-97a9-a9ca8a470b49 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-10A TCGA-BH-A0BJ-10A-01X-A073-09 64de8107-75ea-4411-889e-4f80e7f1803c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23D-A091-02 2988482f-f263-4995-a982-471485b51c9a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23D-A092-01 9790d278-5758-47f1-a233-32f04fe2c2b4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23D-A092-01 9790d278-5758-47f1-a233-32f04fe2c2b4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F09_729562.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23D-A092-01 9790d278-5758-47f1-a233-32f04fe2c2b4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F09_729562.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23D-A092-01 9790d278-5758-47f1-a233-32f04fe2c2b4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F09_729562.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23D-A092-01 9790d278-5758-47f1-a233-32f04fe2c2b4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F09_729562.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23D-A092-01 9790d278-5758-47f1-a233-32f04fe2c2b4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F09_729562.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23D-A092-01 9790d278-5758-47f1-a233-32f04fe2c2b4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F09_729562.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23D-A092-01 9790d278-5758-47f1-a233-32f04fe2c2b4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F09_729562.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23D-A092-01 9790d278-5758-47f1-a233-32f04fe2c2b4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F09_729562.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23D-A093-05 9ab8b2ce-0506-4275-8964-b48e4998b880 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23D-A100-09 3b798f3a-40c2-40bf-ab3b-042a5aca0e24 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23D-A10Q-05 78eb9521-bc6b-4dc2-8dad-df718e22006f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23D-A10Q-05 78eb9521-bc6b-4dc2-8dad-df718e22006f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486011_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23D-A10Q-05 78eb9521-bc6b-4dc2-8dad-df718e22006f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486011_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23D-A10Q-05 78eb9521-bc6b-4dc2-8dad-df718e22006f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0BJ-11A-23D-A10Q-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23D-A10Q-05 78eb9521-bc6b-4dc2-8dad-df718e22006f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0BJ-11A-23D-A10Q-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23R-A089-07 4317b197-dc43-44f2-8854-557832570098 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23R-A089-07 4317b197-dc43-44f2-8854-557832570098 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012656_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 61 02-NOV-10 12.30.07.283000000 AM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23R-A089-07 4317b197-dc43-44f2-8854-557832570098 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012656_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 61 02-NOV-10 12.25.38.097000000 AM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23R-A089-07 4317b197-dc43-44f2-8854-557832570098 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012656_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 61 02-NOV-10 12.26.20.805000000 AM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23R-A089-07 4317b197-dc43-44f2-8854-557832570098 RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_829354.TCGA-BH-A0BJ-11A-23R-A089-07.110909_UNC9-SN296_0240_BD0DDBABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23R-A090-13 eb33725e-21b7-40ce-8a8f-cdd3bdfd03a7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23R-A090-13 eb33725e-21b7-40ce-8a8f-cdd3bdfd03a7 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0BJ-11A-23R-A090-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23R-A090-13 eb33725e-21b7-40ce-8a8f-cdd3bdfd03a7 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0BJ-11A-23R-A090-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23W-A100-09 9fb162fe-879e-454a-a2ce-f1471ecaf3f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23W-A100-09 9fb162fe-879e-454a-a2ce-f1471ecaf3f7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BJ TCGA-BH-A0BJ-11A TCGA-BH-A0BJ-11A-23X-A100-09 7211944f-c576-42e4-b6ba-df022dae8122 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11D-A10X-02 ebca3991-b72d-4058-8843-bdd0c0a60670 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11D-A10Y-09 1eb22fbe-6108-46c9-b51b-814861c3e104 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11D-A10Y-09 1eb22fbe-6108-46c9-b51b-814861c3e104 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11D-A111-01 970819ce-f25d-4f05-98d7-7b3a22b92558 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11D-A111-01 970819ce-f25d-4f05-98d7-7b3a22b92558 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F04_735118.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11D-A111-01 970819ce-f25d-4f05-98d7-7b3a22b92558 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F04_735118.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11D-A111-01 970819ce-f25d-4f05-98d7-7b3a22b92558 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F04_735118.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11D-A111-01 970819ce-f25d-4f05-98d7-7b3a22b92558 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F04_735118.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11D-A111-01 970819ce-f25d-4f05-98d7-7b3a22b92558 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F04_735118.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11D-A111-01 970819ce-f25d-4f05-98d7-7b3a22b92558 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F04_735118.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11D-A111-01 970819ce-f25d-4f05-98d7-7b3a22b92558 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F04_735118.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11D-A111-01 970819ce-f25d-4f05-98d7-7b3a22b92558 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_F04_735118.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11D-A112-05 ddd22834-5897-40f3-aab2-01d76c23cefd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11D-A112-05 ddd22834-5897-40f3-aab2-01d76c23cefd DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-BH-A0BL-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11D-A112-05 ddd22834-5897-40f3-aab2-01d76c23cefd DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-BH-A0BL-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11D-A112-05 ddd22834-5897-40f3-aab2-01d76c23cefd DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-BH-A0BL-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11R-A114-13 03cad275-fe58-4dd5-8953-b0cf11d5d3de Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11R-A114-13 03cad275-fe58-4dd5-8953-b0cf11d5d3de miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BL-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11R-A114-13 03cad275-fe58-4dd5-8953-b0cf11d5d3de miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BL-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11R-A115-07 39ca8590-3733-4b61-9a46-4ec5e6e0501e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11R-A115-07 39ca8590-3733-4b61-9a46-4ec5e6e0501e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012758_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11R-A115-07 39ca8590-3733-4b61-9a46-4ec5e6e0501e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012758_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11R-A115-07 39ca8590-3733-4b61-9a46-4ec5e6e0501e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012758_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11R-A115-07 39ca8590-3733-4b61-9a46-4ec5e6e0501e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_448958.TCGA-BH-A0BL-01A-11R-A115-07.110608_UNC13-SN749_0073_BD0CV8ABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11R-A115-07 39ca8590-3733-4b61-9a46-4ec5e6e0501e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_449218.TCGA-BH-A0BL-01A-11R-A115-07.110608_UNC13-SN749_0073_BD0CV8ABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11R-A115-07 39ca8590-3733-4b61-9a46-4ec5e6e0501e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_449224.TCGA-BH-A0BL-01A-11R-A115-07.110608_UNC13-SN749_0073_BD0CV8ABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-01A TCGA-BH-A0BL-01A-11W-A12T-09 77bcbc35-a7c6-4132-926c-d61c295b8fe4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-10A TCGA-BH-A0BL-10A-01D-A10Z-02 9615a480-59d9-41b6-bddb-378a256273f2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-10A TCGA-BH-A0BL-10A-01D-A110-09 10add567-cef4-464f-98a7-23a153bc1c40 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-10A TCGA-BH-A0BL-10A-01D-A110-09 10add567-cef4-464f-98a7-23a153bc1c40 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-10A TCGA-BH-A0BL-10A-01D-A113-01 f5e4e365-7383-464e-b97a-77d30c2a2d9d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-10A TCGA-BH-A0BL-10A-01D-A113-01 f5e4e365-7383-464e-b97a-77d30c2a2d9d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A08_735126.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0BL TCGA-BH-A0BL-10A TCGA-BH-A0BL-10A-01D-A113-01 f5e4e365-7383-464e-b97a-77d30c2a2d9d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A08_735126.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-10A TCGA-BH-A0BL-10A-01D-A113-01 f5e4e365-7383-464e-b97a-77d30c2a2d9d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A08_735126.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-10A TCGA-BH-A0BL-10A-01D-A113-01 f5e4e365-7383-464e-b97a-77d30c2a2d9d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A08_735126.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-10A TCGA-BH-A0BL-10A-01D-A113-01 f5e4e365-7383-464e-b97a-77d30c2a2d9d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A08_735126.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-10A TCGA-BH-A0BL-10A-01D-A113-01 f5e4e365-7383-464e-b97a-77d30c2a2d9d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A08_735126.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-10A TCGA-BH-A0BL-10A-01D-A113-01 f5e4e365-7383-464e-b97a-77d30c2a2d9d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A08_735126.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-10A TCGA-BH-A0BL-10A-01D-A113-01 f5e4e365-7383-464e-b97a-77d30c2a2d9d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A08_735126.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-10A TCGA-BH-A0BL-10A-01W-A12U-09 dabbeab0-9fc9-4098-9dfb-08e8e2261331 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-11A TCGA-BH-A0BL-11A-12D-A10X-02 b793fe2c-d9b7-49f0-a80f-6a77a324804f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-11A TCGA-BH-A0BL-11A-12D-A10Y-09 c02df4df-aa5a-4e13-b0a6-5a4d46e4f474 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-11A TCGA-BH-A0BL-11A-12D-A10Y-09 c02df4df-aa5a-4e13-b0a6-5a4d46e4f474 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-11A TCGA-BH-A0BL-11A-12D-A111-01 e02e3a7c-8ad8-40c3-aab7-d9b5f7c32822 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-11A TCGA-BH-A0BL-11A-12D-A111-01 e02e3a7c-8ad8-40c3-aab7-d9b5f7c32822 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D03_735066.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0BL TCGA-BH-A0BL-11A TCGA-BH-A0BL-11A-12D-A111-01 e02e3a7c-8ad8-40c3-aab7-d9b5f7c32822 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D03_735066.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-11A TCGA-BH-A0BL-11A-12D-A111-01 e02e3a7c-8ad8-40c3-aab7-d9b5f7c32822 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D03_735066.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-11A TCGA-BH-A0BL-11A-12D-A111-01 e02e3a7c-8ad8-40c3-aab7-d9b5f7c32822 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D03_735066.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-11A TCGA-BH-A0BL-11A-12D-A111-01 e02e3a7c-8ad8-40c3-aab7-d9b5f7c32822 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D03_735066.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-11A TCGA-BH-A0BL-11A-12D-A111-01 e02e3a7c-8ad8-40c3-aab7-d9b5f7c32822 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D03_735066.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-11A TCGA-BH-A0BL-11A-12D-A111-01 e02e3a7c-8ad8-40c3-aab7-d9b5f7c32822 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D03_735066.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-11A TCGA-BH-A0BL-11A-12D-A111-01 e02e3a7c-8ad8-40c3-aab7-d9b5f7c32822 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D03_735066.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-11A TCGA-BH-A0BL-11A-12D-A112-05 afa8b73b-cba0-4a27-b184-54921fb31090 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-11A TCGA-BH-A0BL-11A-12D-A112-05 afa8b73b-cba0-4a27-b184-54921fb31090 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-BH-A0BL-11A-12D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-11A TCGA-BH-A0BL-11A-12D-A112-05 afa8b73b-cba0-4a27-b184-54921fb31090 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-BH-A0BL-11A-12D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-11A TCGA-BH-A0BL-11A-12D-A112-05 afa8b73b-cba0-4a27-b184-54921fb31090 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-BH-A0BL-11A-12D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-BH-A0BL TCGA-BH-A0BL-11A TCGA-BH-A0BL-11A-12W-A12T-09 42527223-5e8b-4291-bcfa-7b34d9e6a77c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11D-A058-05 e4b1f719-f5f9-4287-b876-859f66d4a65e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11D-A059-01 4570b87f-8116-48bf-86d3-b993536c88db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11D-A059-01 4570b87f-8116-48bf-86d3-b993536c88db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D03_697114.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11D-A059-01 4570b87f-8116-48bf-86d3-b993536c88db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D03_697114.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11D-A059-01 4570b87f-8116-48bf-86d3-b993536c88db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D03_697114.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11D-A059-01 4570b87f-8116-48bf-86d3-b993536c88db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D03_697114.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11D-A059-01 4570b87f-8116-48bf-86d3-b993536c88db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D03_697114.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11D-A059-01 4570b87f-8116-48bf-86d3-b993536c88db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D03_697114.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11D-A059-01 4570b87f-8116-48bf-86d3-b993536c88db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D03_697114.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11D-A059-01 4570b87f-8116-48bf-86d3-b993536c88db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D03_697114.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11D-A060-02 fa99dd38-37f1-4b24-960e-617f92cdadd0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11D-A074-08 dbae5242-25f3-4f39-b8d9-f9f52cb361e5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11D-A075-09 0355ddd4-52d9-4168-b73d-f5540a7b314d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11D-A10P-05 c3fd56c4-d8e2-4e38-a891-9c614e9400f5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11D-A10P-05 c3fd56c4-d8e2-4e38-a891-9c614e9400f5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486023_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11D-A10P-05 c3fd56c4-d8e2-4e38-a891-9c614e9400f5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486023_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11D-A10P-05 c3fd56c4-d8e2-4e38-a891-9c614e9400f5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0BM-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11D-A10P-05 c3fd56c4-d8e2-4e38-a891-9c614e9400f5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0BM-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11R-A056-07 986550fb-92db-4e9f-b79a-6c3023dd63a3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11R-A056-07 986550fb-92db-4e9f-b79a-6c3023dd63a3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012479_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11R-A056-07 986550fb-92db-4e9f-b79a-6c3023dd63a3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012479_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11R-A056-07 986550fb-92db-4e9f-b79a-6c3023dd63a3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012479_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11R-A056-07 986550fb-92db-4e9f-b79a-6c3023dd63a3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442990.TCGA-BH-A0BM-01A-11R-A056-07.110325_UNC11-SN627_0070_AB02DVABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11R-A056-07 986550fb-92db-4e9f-b79a-6c3023dd63a3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443075.TCGA-BH-A0BM-01A-11R-A056-07.110325_UNC11-SN627_0070_AB02DVABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11R-A056-07 986550fb-92db-4e9f-b79a-6c3023dd63a3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443111.TCGA-BH-A0BM-01A-11R-A056-07.110325_UNC11-SN627_0070_AB02DVABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11R-A057-13 1056ce7f-b254-49b0-8784-370ea9693737 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11R-A057-13 1056ce7f-b254-49b0-8784-370ea9693737 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0BM-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11R-A057-13 1056ce7f-b254-49b0-8784-370ea9693737 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0BM-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11W-A070-08 1c168040-8ee8-4747-b71c-874909298f7e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11W-A071-09 800b3e93-7804-4773-bbc6-e8b3eff0912d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11W-A071-09 800b3e93-7804-4773-bbc6-e8b3eff0912d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11X-A072-08 6eb1454e-84db-4044-96e4-b70c118d174c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-01A TCGA-BH-A0BM-01A-11X-A073-09 d21a03c4-0545-4046-922b-7a94dd892e5f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-10A TCGA-BH-A0BM-10A-01D-A059-01 c64e736f-9e59-4cc2-9ae6-acf6f3d6866e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-10A TCGA-BH-A0BM-10A-01D-A059-01 c64e736f-9e59-4cc2-9ae6-acf6f3d6866e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D07_697058.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0BM TCGA-BH-A0BM-10A TCGA-BH-A0BM-10A-01D-A059-01 c64e736f-9e59-4cc2-9ae6-acf6f3d6866e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D07_697058.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-10A TCGA-BH-A0BM-10A-01D-A059-01 c64e736f-9e59-4cc2-9ae6-acf6f3d6866e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D07_697058.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-10A TCGA-BH-A0BM-10A-01D-A059-01 c64e736f-9e59-4cc2-9ae6-acf6f3d6866e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D07_697058.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-10A TCGA-BH-A0BM-10A-01D-A059-01 c64e736f-9e59-4cc2-9ae6-acf6f3d6866e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D07_697058.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-10A TCGA-BH-A0BM-10A-01D-A059-01 c64e736f-9e59-4cc2-9ae6-acf6f3d6866e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D07_697058.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-10A TCGA-BH-A0BM-10A-01D-A059-01 c64e736f-9e59-4cc2-9ae6-acf6f3d6866e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D07_697058.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-10A TCGA-BH-A0BM-10A-01D-A059-01 c64e736f-9e59-4cc2-9ae6-acf6f3d6866e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D07_697058.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-10A TCGA-BH-A0BM-10A-01D-A060-02 d770733c-ee28-4d36-845f-fd51c1f72666 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-10A TCGA-BH-A0BM-10A-01D-A074-08 8c5ccd26-7d7a-4246-bec3-0919834ae6ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-10A TCGA-BH-A0BM-10A-01D-A075-09 c8fa37ed-4662-4d31-8601-0321ad8928f1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-10A TCGA-BH-A0BM-10A-01W-A070-08 d0b0f5f7-7398-433f-99cd-5c660f2be6ab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-10A TCGA-BH-A0BM-10A-01W-A071-09 e989de90-43bc-4b32-ba64-95d595d3d57c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-10A TCGA-BH-A0BM-10A-01W-A071-09 e989de90-43bc-4b32-ba64-95d595d3d57c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-10A TCGA-BH-A0BM-10A-01X-A072-08 a09beedb-1fc5-462d-962d-faed289a329c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-10A TCGA-BH-A0BM-10A-01X-A073-09 89cd1f11-338e-4c42-96ec-bf7d115fd25f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-11A TCGA-BH-A0BM-11A-12D-A092-01 c41d60da-8dd6-46b7-a72c-12cc55eb59c5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-11A TCGA-BH-A0BM-11A-12D-A092-01 c41d60da-8dd6-46b7-a72c-12cc55eb59c5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_E11_729696.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0BM TCGA-BH-A0BM-11A TCGA-BH-A0BM-11A-12D-A092-01 c41d60da-8dd6-46b7-a72c-12cc55eb59c5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_E11_729696.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-11A TCGA-BH-A0BM-11A-12D-A092-01 c41d60da-8dd6-46b7-a72c-12cc55eb59c5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_E11_729696.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-11A TCGA-BH-A0BM-11A-12D-A092-01 c41d60da-8dd6-46b7-a72c-12cc55eb59c5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_E11_729696.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-11A TCGA-BH-A0BM-11A-12D-A092-01 c41d60da-8dd6-46b7-a72c-12cc55eb59c5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_E11_729696.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-11A TCGA-BH-A0BM-11A-12D-A092-01 c41d60da-8dd6-46b7-a72c-12cc55eb59c5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_E11_729696.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-11A TCGA-BH-A0BM-11A-12D-A092-01 c41d60da-8dd6-46b7-a72c-12cc55eb59c5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_E11_729696.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-11A TCGA-BH-A0BM-11A-12D-A092-01 c41d60da-8dd6-46b7-a72c-12cc55eb59c5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_E11_729696.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-11A TCGA-BH-A0BM-11A-12D-A093-05 eeee1aa6-d8b2-4946-ad3e-fb15c09c093a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-11A TCGA-BH-A0BM-11A-12D-A093-05 eeee1aa6-d8b2-4946-ad3e-fb15c09c093a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486025_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-11A TCGA-BH-A0BM-11A-12D-A093-05 eeee1aa6-d8b2-4946-ad3e-fb15c09c093a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486025_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-11A TCGA-BH-A0BM-11A-12D-A093-05 eeee1aa6-d8b2-4946-ad3e-fb15c09c093a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0BM-11A-12D-A093-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-11A TCGA-BH-A0BM-11A-12D-A093-05 eeee1aa6-d8b2-4946-ad3e-fb15c09c093a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0BM-11A-12D-A093-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-11A TCGA-BH-A0BM-11A-12D-A10E-09 70bbac2a-fc6b-4345-8690-24e53d27766c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-11A TCGA-BH-A0BM-11A-12R-A089-07 fe538d53-c7ce-455f-afe6-cb4fc3a63dbd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-11A TCGA-BH-A0BM-11A-12R-A089-07 fe538d53-c7ce-455f-afe6-cb4fc3a63dbd Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012651_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 61 02-NOV-10 12.30.07.283000000 AM TCGA-BH-A0BM TCGA-BH-A0BM-11A TCGA-BH-A0BM-11A-12R-A089-07 fe538d53-c7ce-455f-afe6-cb4fc3a63dbd Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012651_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 61 02-NOV-10 12.25.38.097000000 AM TCGA-BH-A0BM TCGA-BH-A0BM-11A TCGA-BH-A0BM-11A-12R-A089-07 fe538d53-c7ce-455f-afe6-cb4fc3a63dbd Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012651_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 61 02-NOV-10 12.26.20.805000000 AM TCGA-BH-A0BM TCGA-BH-A0BM-11A TCGA-BH-A0BM-11A-12R-A089-07 fe538d53-c7ce-455f-afe6-cb4fc3a63dbd RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_492524.TCGA-BH-A0BM-11A-12R-A089-07.110912_UNC13-SN749_0111_AD0DEAABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-11A TCGA-BH-A0BM-11A-12R-A089-07 fe538d53-c7ce-455f-afe6-cb4fc3a63dbd RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_492526.TCGA-BH-A0BM-11A-12R-A089-07.110912_UNC13-SN749_0111_AD0DEAABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-11A TCGA-BH-A0BM-11A-12R-A089-07 fe538d53-c7ce-455f-afe6-cb4fc3a63dbd RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_492531.TCGA-BH-A0BM-11A-12R-A089-07.110912_UNC13-SN749_0111_AD0DEAABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-11A TCGA-BH-A0BM-11A-12W-A10F-09 eb6628fe-e242-477d-8e3f-2963b0b6e760 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-11A TCGA-BH-A0BM-11A-12W-A10F-09 eb6628fe-e242-477d-8e3f-2963b0b6e760 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BM TCGA-BH-A0BM-11A TCGA-BH-A0BM-11A-12X-A10F-09 887ab311-becb-4790-8f63-e93783ecea39 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23D-A129-02 81d1d3d2-f6ac-42e7-96f9-4589f2f14f28 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23D-A12A-01 54a230c7-e233-4b8b-81d9-7287b8f5d5e0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23D-A12A-01 54a230c7-e233-4b8b-81d9-7287b8f5d5e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A04_741458.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23D-A12A-01 54a230c7-e233-4b8b-81d9-7287b8f5d5e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A04_741458.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23D-A12A-01 54a230c7-e233-4b8b-81d9-7287b8f5d5e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A04_741458.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23D-A12A-01 54a230c7-e233-4b8b-81d9-7287b8f5d5e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A04_741458.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23D-A12A-01 54a230c7-e233-4b8b-81d9-7287b8f5d5e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A04_741458.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23D-A12A-01 54a230c7-e233-4b8b-81d9-7287b8f5d5e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A04_741458.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23D-A12A-01 54a230c7-e233-4b8b-81d9-7287b8f5d5e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A04_741458.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23D-A12A-01 54a230c7-e233-4b8b-81d9-7287b8f5d5e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A04_741458.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23D-A12B-09 63af8579-99b1-4f81-92a6-4e3a31715be1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23D-A12B-09 63af8579-99b1-4f81-92a6-4e3a31715be1 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23D-A12E-05 b34e9b76-68bf-4cfa-8ef3-ac9e82b46193 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23D-A12E-05 b34e9b76-68bf-4cfa-8ef3-ac9e82b46193 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A0BO-01A-23D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23D-A12E-05 b34e9b76-68bf-4cfa-8ef3-ac9e82b46193 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A0BO-01A-23D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23D-A12E-05 b34e9b76-68bf-4cfa-8ef3-ac9e82b46193 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A0BO-01A-23D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23R-A12C-13 dfb12ef3-bf28-44a8-b54a-20161b4ef4a4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23R-A12C-13 dfb12ef3-bf28-44a8-b54a-20161b4ef4a4 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BO-01A-23R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23R-A12C-13 dfb12ef3-bf28-44a8-b54a-20161b4ef4a4 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BO-01A-23R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23R-A12D-07 682a9c8d-8174-4435-9ec8-cb2d58bbe6d5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23R-A12D-07 682a9c8d-8174-4435-9ec8-cb2d58bbe6d5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012872_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23R-A12D-07 682a9c8d-8174-4435-9ec8-cb2d58bbe6d5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012872_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23R-A12D-07 682a9c8d-8174-4435-9ec8-cb2d58bbe6d5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012872_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23R-A12D-07 682a9c8d-8174-4435-9ec8-cb2d58bbe6d5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_705855.TCGA-BH-A0BO-01A-23R-A12D-07.110628_UNC10-SN254_0239_BD0CTRABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23R-A12D-07 682a9c8d-8174-4435-9ec8-cb2d58bbe6d5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_706250.TCGA-BH-A0BO-01A-23R-A12D-07.110628_UNC10-SN254_0239_BD0CTRABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23R-A12D-07 682a9c8d-8174-4435-9ec8-cb2d58bbe6d5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_706415.TCGA-BH-A0BO-01A-23R-A12D-07.110628_UNC10-SN254_0239_BD0CTRABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-01A TCGA-BH-A0BO-01A-23W-A12S-09 59503226-d670-40bf-b794-3d1aafa5334b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-10A TCGA-BH-A0BO-10A-01D-A129-02 cd3fe536-e88a-4c06-b623-31977c078918 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-10A TCGA-BH-A0BO-10A-01D-A12A-01 eae74129-2fe5-41b3-b4c7-5f19c59580b7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-10A TCGA-BH-A0BO-10A-01D-A12A-01 eae74129-2fe5-41b3-b4c7-5f19c59580b7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B05_741438.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A0BO TCGA-BH-A0BO-10A TCGA-BH-A0BO-10A-01D-A12A-01 eae74129-2fe5-41b3-b4c7-5f19c59580b7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B05_741438.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-10A TCGA-BH-A0BO-10A-01D-A12A-01 eae74129-2fe5-41b3-b4c7-5f19c59580b7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B05_741438.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-10A TCGA-BH-A0BO-10A-01D-A12A-01 eae74129-2fe5-41b3-b4c7-5f19c59580b7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B05_741438.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-10A TCGA-BH-A0BO-10A-01D-A12A-01 eae74129-2fe5-41b3-b4c7-5f19c59580b7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B05_741438.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-10A TCGA-BH-A0BO-10A-01D-A12A-01 eae74129-2fe5-41b3-b4c7-5f19c59580b7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B05_741438.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-10A TCGA-BH-A0BO-10A-01D-A12A-01 eae74129-2fe5-41b3-b4c7-5f19c59580b7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B05_741438.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-10A TCGA-BH-A0BO-10A-01D-A12A-01 eae74129-2fe5-41b3-b4c7-5f19c59580b7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B05_741438.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-10A TCGA-BH-A0BO-10A-01D-A12B-09 42ae8faa-3a1c-4068-a71e-612c411bf102 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-10A TCGA-BH-A0BO-10A-01D-A12B-09 42ae8faa-3a1c-4068-a71e-612c411bf102 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-10A TCGA-BH-A0BO-10A-01W-A12S-09 20957c9f-bb3c-4cc8-86b2-71da05dd958c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-11A TCGA-BH-A0BO-11A-11D-A129-02 c03d357c-8812-44dd-8aa6-7f22066f032c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-11A TCGA-BH-A0BO-11A-11D-A12A-01 1e92c8b8-819b-42c0-93b1-e3c87de1cfc1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-11A TCGA-BH-A0BO-11A-11D-A12A-01 1e92c8b8-819b-42c0-93b1-e3c87de1cfc1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H10_741508.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A0BO TCGA-BH-A0BO-11A TCGA-BH-A0BO-11A-11D-A12A-01 1e92c8b8-819b-42c0-93b1-e3c87de1cfc1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H10_741508.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-11A TCGA-BH-A0BO-11A-11D-A12A-01 1e92c8b8-819b-42c0-93b1-e3c87de1cfc1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H10_741508.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-11A TCGA-BH-A0BO-11A-11D-A12A-01 1e92c8b8-819b-42c0-93b1-e3c87de1cfc1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H10_741508.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-11A TCGA-BH-A0BO-11A-11D-A12A-01 1e92c8b8-819b-42c0-93b1-e3c87de1cfc1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H10_741508.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-11A TCGA-BH-A0BO-11A-11D-A12A-01 1e92c8b8-819b-42c0-93b1-e3c87de1cfc1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H10_741508.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-11A TCGA-BH-A0BO-11A-11D-A12A-01 1e92c8b8-819b-42c0-93b1-e3c87de1cfc1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H10_741508.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-11A TCGA-BH-A0BO-11A-11D-A12A-01 1e92c8b8-819b-42c0-93b1-e3c87de1cfc1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H10_741508.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-11A TCGA-BH-A0BO-11A-11D-A12B-09 2f936210-a942-4f9b-8456-04c8e8cfb09f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-11A TCGA-BH-A0BO-11A-11D-A12B-09 2f936210-a942-4f9b-8456-04c8e8cfb09f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-11A TCGA-BH-A0BO-11A-11D-A12E-05 b099f3fb-7042-4b7c-8d40-12c062733cdb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-11A TCGA-BH-A0BO-11A-11D-A12E-05 b099f3fb-7042-4b7c-8d40-12c062733cdb DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A0BO-11A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-11A TCGA-BH-A0BO-11A-11D-A12E-05 b099f3fb-7042-4b7c-8d40-12c062733cdb DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A0BO-11A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-11A TCGA-BH-A0BO-11A-11D-A12E-05 b099f3fb-7042-4b7c-8d40-12c062733cdb DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A0BO-11A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A0BO TCGA-BH-A0BO-11A TCGA-BH-A0BO-11A-11W-A12S-09 55249996-49e5-4994-b8b8-45b4b45cd2ad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11D-A10X-02 b212642c-d637-4bd4-98cc-3e5e0834610b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11D-A10Y-09 51405cf1-e844-4316-be17-85e8ad1de4a3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11D-A10Y-09 51405cf1-e844-4316-be17-85e8ad1de4a3 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11D-A111-01 33bfefcb-2e9c-4f68-a9e7-3a3ecf8d7e59 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11D-A111-01 33bfefcb-2e9c-4f68-a9e7-3a3ecf8d7e59 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H05_735042.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11D-A111-01 33bfefcb-2e9c-4f68-a9e7-3a3ecf8d7e59 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H05_735042.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11D-A111-01 33bfefcb-2e9c-4f68-a9e7-3a3ecf8d7e59 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H05_735042.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11D-A111-01 33bfefcb-2e9c-4f68-a9e7-3a3ecf8d7e59 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H05_735042.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11D-A111-01 33bfefcb-2e9c-4f68-a9e7-3a3ecf8d7e59 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H05_735042.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11D-A111-01 33bfefcb-2e9c-4f68-a9e7-3a3ecf8d7e59 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H05_735042.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11D-A111-01 33bfefcb-2e9c-4f68-a9e7-3a3ecf8d7e59 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H05_735042.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11D-A111-01 33bfefcb-2e9c-4f68-a9e7-3a3ecf8d7e59 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H05_735042.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11D-A112-05 7073dc09-ca58-431c-8c02-7726247d54ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11D-A112-05 7073dc09-ca58-431c-8c02-7726247d54ec DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-BH-A0BP-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11D-A112-05 7073dc09-ca58-431c-8c02-7726247d54ec DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-BH-A0BP-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11D-A112-05 7073dc09-ca58-431c-8c02-7726247d54ec DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-BH-A0BP-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11R-A114-13 70ff5ffc-ca27-498e-afc0-0d48878f111c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11R-A114-13 70ff5ffc-ca27-498e-afc0-0d48878f111c miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BP-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11R-A114-13 70ff5ffc-ca27-498e-afc0-0d48878f111c miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BP-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11R-A115-07 acbae442-ba6c-4d28-b3bc-58bb4dd93ece Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11R-A115-07 acbae442-ba6c-4d28-b3bc-58bb4dd93ece Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012770_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11R-A115-07 acbae442-ba6c-4d28-b3bc-58bb4dd93ece Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012770_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11R-A115-07 acbae442-ba6c-4d28-b3bc-58bb4dd93ece Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012770_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11R-A115-07 acbae442-ba6c-4d28-b3bc-58bb4dd93ece RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441643.TCGA-BH-A0BP-01A-11R-A115-07.110510_UNC15-SN850_0068_AB0BDUABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11R-A115-07 acbae442-ba6c-4d28-b3bc-58bb4dd93ece RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441792.TCGA-BH-A0BP-01A-11R-A115-07.110510_UNC15-SN850_0068_AB0BDUABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11R-A115-07 acbae442-ba6c-4d28-b3bc-58bb4dd93ece RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442163.TCGA-BH-A0BP-01A-11R-A115-07.110510_UNC15-SN850_0068_AB0BDUABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-01A TCGA-BH-A0BP-01A-11W-A12T-09 0cfd5988-0302-4383-b473-bffd7fa2a33c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-10A TCGA-BH-A0BP-10A-01D-A10Z-02 58671cc6-0643-4680-a4a4-429d4447574b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-10A TCGA-BH-A0BP-10A-01D-A110-09 f1b6fe69-8f67-4fc8-8650-664ab02d7cfb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-10A TCGA-BH-A0BP-10A-01D-A110-09 f1b6fe69-8f67-4fc8-8650-664ab02d7cfb Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-10A TCGA-BH-A0BP-10A-01D-A113-01 73fd6b84-aee0-4981-a8fd-534f151065eb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-10A TCGA-BH-A0BP-10A-01D-A113-01 73fd6b84-aee0-4981-a8fd-534f151065eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G12_735092.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0BP TCGA-BH-A0BP-10A TCGA-BH-A0BP-10A-01D-A113-01 73fd6b84-aee0-4981-a8fd-534f151065eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G12_735092.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-10A TCGA-BH-A0BP-10A-01D-A113-01 73fd6b84-aee0-4981-a8fd-534f151065eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G12_735092.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-10A TCGA-BH-A0BP-10A-01D-A113-01 73fd6b84-aee0-4981-a8fd-534f151065eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G12_735092.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-10A TCGA-BH-A0BP-10A-01D-A113-01 73fd6b84-aee0-4981-a8fd-534f151065eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G12_735092.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-10A TCGA-BH-A0BP-10A-01D-A113-01 73fd6b84-aee0-4981-a8fd-534f151065eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G12_735092.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-10A TCGA-BH-A0BP-10A-01D-A113-01 73fd6b84-aee0-4981-a8fd-534f151065eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G12_735092.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-10A TCGA-BH-A0BP-10A-01D-A113-01 73fd6b84-aee0-4981-a8fd-534f151065eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G12_735092.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0BP TCGA-BH-A0BP-10A TCGA-BH-A0BP-10A-01W-A12U-09 06718782-70fa-4bf9-8940-734a8490dc78 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21D-A10X-02 acf690d2-6530-4942-b34e-57d0226b26e1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21D-A10Y-09 8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21D-A10Y-09 8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21D-A111-01 cf180187-bd5a-468e-8560-da1e48441b52 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21D-A111-01 cf180187-bd5a-468e-8560-da1e48441b52 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B05_735068.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21D-A111-01 cf180187-bd5a-468e-8560-da1e48441b52 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B05_735068.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21D-A111-01 cf180187-bd5a-468e-8560-da1e48441b52 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B05_735068.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21D-A111-01 cf180187-bd5a-468e-8560-da1e48441b52 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B05_735068.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21D-A111-01 cf180187-bd5a-468e-8560-da1e48441b52 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B05_735068.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21D-A111-01 cf180187-bd5a-468e-8560-da1e48441b52 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B05_735068.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21D-A111-01 cf180187-bd5a-468e-8560-da1e48441b52 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B05_735068.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21D-A111-01 cf180187-bd5a-468e-8560-da1e48441b52 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B05_735068.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21D-A112-05 faa79936-e9cf-4686-87fb-3224359decec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21D-A112-05 faa79936-e9cf-4686-87fb-3224359decec DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-BH-A0BQ-01A-21D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21D-A112-05 faa79936-e9cf-4686-87fb-3224359decec DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-BH-A0BQ-01A-21D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21D-A112-05 faa79936-e9cf-4686-87fb-3224359decec DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-BH-A0BQ-01A-21D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21R-A114-13 e149324b-bbca-4e8e-bc79-9501a78f9a42 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21R-A114-13 e149324b-bbca-4e8e-bc79-9501a78f9a42 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BQ-01A-21R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21R-A114-13 e149324b-bbca-4e8e-bc79-9501a78f9a42 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BQ-01A-21R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21R-A115-07 2ada4fe0-57f2-4a54-9580-4e0ae45a2f65 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21R-A115-07 2ada4fe0-57f2-4a54-9580-4e0ae45a2f65 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012783_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21R-A115-07 2ada4fe0-57f2-4a54-9580-4e0ae45a2f65 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012783_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21R-A115-07 2ada4fe0-57f2-4a54-9580-4e0ae45a2f65 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012783_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21R-A115-07 2ada4fe0-57f2-4a54-9580-4e0ae45a2f65 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442210.TCGA-BH-A0BQ-01A-21R-A115-07.110510_UNC15-SN850_0068_AB0BDUABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21R-A115-07 2ada4fe0-57f2-4a54-9580-4e0ae45a2f65 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442213.TCGA-BH-A0BQ-01A-21R-A115-07.110510_UNC15-SN850_0068_AB0BDUABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21R-A115-07 2ada4fe0-57f2-4a54-9580-4e0ae45a2f65 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442265.TCGA-BH-A0BQ-01A-21R-A115-07.110510_UNC15-SN850_0068_AB0BDUABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-01A TCGA-BH-A0BQ-01A-21W-A12T-09 0ba47323-85d2-4a63-b614-08dde0850314 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-10A TCGA-BH-A0BQ-10A-01D-A10Z-02 da5f120e-3601-4e44-b8d1-9f38a9f3cabf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-10A TCGA-BH-A0BQ-10A-01D-A110-09 27facd2e-781d-4772-bb8c-7a1bc664c53e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-10A TCGA-BH-A0BQ-10A-01D-A110-09 27facd2e-781d-4772-bb8c-7a1bc664c53e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-10A TCGA-BH-A0BQ-10A-01D-A113-01 09fdbc09-f896-46f5-9e6f-1540efef7879 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-10A TCGA-BH-A0BQ-10A-01W-A12U-09 2bf16199-3d73-4721-9699-2ae0ef14564b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-11A TCGA-BH-A0BQ-11A-33D-A10X-02 e1b46d0b-0147-4e91-b2d3-a9a0bc187aac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-11A TCGA-BH-A0BQ-11A-33D-A10Y-09 828c2886-4775-457c-a276-b7825c65d67a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-11A TCGA-BH-A0BQ-11A-33D-A10Y-09 828c2886-4775-457c-a276-b7825c65d67a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-11A TCGA-BH-A0BQ-11A-33D-A111-01 999ad5cc-2abb-409d-a496-5279a75fca86 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-11A TCGA-BH-A0BQ-11A-33D-A111-01 999ad5cc-2abb-409d-a496-5279a75fca86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D04_735094.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0BQ TCGA-BH-A0BQ-11A TCGA-BH-A0BQ-11A-33D-A111-01 999ad5cc-2abb-409d-a496-5279a75fca86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D04_735094.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-11A TCGA-BH-A0BQ-11A-33D-A111-01 999ad5cc-2abb-409d-a496-5279a75fca86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D04_735094.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-11A TCGA-BH-A0BQ-11A-33D-A111-01 999ad5cc-2abb-409d-a496-5279a75fca86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D04_735094.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-11A TCGA-BH-A0BQ-11A-33D-A111-01 999ad5cc-2abb-409d-a496-5279a75fca86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D04_735094.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-11A TCGA-BH-A0BQ-11A-33D-A111-01 999ad5cc-2abb-409d-a496-5279a75fca86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D04_735094.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-11A TCGA-BH-A0BQ-11A-33D-A111-01 999ad5cc-2abb-409d-a496-5279a75fca86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D04_735094.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-11A TCGA-BH-A0BQ-11A-33D-A111-01 999ad5cc-2abb-409d-a496-5279a75fca86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D04_735094.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-11A TCGA-BH-A0BQ-11A-33D-A112-05 ce9f7449-4b51-4433-8ae2-2f42164f6637 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-11A TCGA-BH-A0BQ-11A-33D-A112-05 ce9f7449-4b51-4433-8ae2-2f42164f6637 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-BH-A0BQ-11A-33D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-11A TCGA-BH-A0BQ-11A-33D-A112-05 ce9f7449-4b51-4433-8ae2-2f42164f6637 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-BH-A0BQ-11A-33D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-11A TCGA-BH-A0BQ-11A-33D-A112-05 ce9f7449-4b51-4433-8ae2-2f42164f6637 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-BH-A0BQ-11A-33D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-11A TCGA-BH-A0BQ-11A-33R-A114-13 4a073d52-be63-4259-9554-bec6542d13d4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-11A TCGA-BH-A0BQ-11A-33R-A115-07 4096c8a6-5ead-4410-8da1-a20b0f37cce8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-11A TCGA-BH-A0BQ-11A-33R-A115-07 4096c8a6-5ead-4410-8da1-a20b0f37cce8 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012796_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-BH-A0BQ TCGA-BH-A0BQ-11A TCGA-BH-A0BQ-11A-33R-A115-07 4096c8a6-5ead-4410-8da1-a20b0f37cce8 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012796_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-BH-A0BQ TCGA-BH-A0BQ-11A TCGA-BH-A0BQ-11A-33R-A115-07 4096c8a6-5ead-4410-8da1-a20b0f37cce8 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012796_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-BH-A0BQ TCGA-BH-A0BQ-11A TCGA-BH-A0BQ-11A-33R-A115-07 4096c8a6-5ead-4410-8da1-a20b0f37cce8 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420767.TCGA-BH-A0BQ-11A-33R-A115-07.110608_SN254_0230_AC03JGABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-11A TCGA-BH-A0BQ-11A-33R-A115-07 4096c8a6-5ead-4410-8da1-a20b0f37cce8 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420770.TCGA-BH-A0BQ-11A-33R-A115-07.110608_SN254_0230_AC03JGABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-11A TCGA-BH-A0BQ-11A-33R-A115-07 4096c8a6-5ead-4410-8da1-a20b0f37cce8 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420831.TCGA-BH-A0BQ-11A-33R-A115-07.110608_SN254_0230_AC03JGABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BQ TCGA-BH-A0BQ-11A TCGA-BH-A0BQ-11A-33W-A12T-09 46b25f2e-91a7-44a3-a0e1-023ca1e5404f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21D-A10X-02 efc95c74-cd1c-45da-b5e6-0392e37492b5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21D-A10Y-09 0a31d504-c1dc-4c85-8079-bf1756f2c281 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21D-A111-01 b8ff6277-3c53-4912-ae50-8e82a94f7244 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21D-A111-01 b8ff6277-3c53-4912-ae50-8e82a94f7244 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G02_735084.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21D-A111-01 b8ff6277-3c53-4912-ae50-8e82a94f7244 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G02_735084.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21D-A111-01 b8ff6277-3c53-4912-ae50-8e82a94f7244 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G02_735084.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21D-A111-01 b8ff6277-3c53-4912-ae50-8e82a94f7244 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G02_735084.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21D-A111-01 b8ff6277-3c53-4912-ae50-8e82a94f7244 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G02_735084.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21D-A111-01 b8ff6277-3c53-4912-ae50-8e82a94f7244 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G02_735084.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21D-A111-01 b8ff6277-3c53-4912-ae50-8e82a94f7244 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G02_735084.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21D-A111-01 b8ff6277-3c53-4912-ae50-8e82a94f7244 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G02_735084.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21D-A112-05 dfdf4f91-7df2-4d84-92ce-86ce84c876a0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21D-A112-05 dfdf4f91-7df2-4d84-92ce-86ce84c876a0 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-BH-A0BR-01A-21D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21D-A112-05 dfdf4f91-7df2-4d84-92ce-86ce84c876a0 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-BH-A0BR-01A-21D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21D-A112-05 dfdf4f91-7df2-4d84-92ce-86ce84c876a0 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-BH-A0BR-01A-21D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21R-A114-13 2197544f-4509-46ae-967d-ded0cf6a00e2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21R-A114-13 2197544f-4509-46ae-967d-ded0cf6a00e2 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BR-01A-21R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21R-A114-13 2197544f-4509-46ae-967d-ded0cf6a00e2 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BR-01A-21R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21R-A115-07 0ef20000-2c8e-47bb-86e5-ffa2814099a7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21R-A115-07 0ef20000-2c8e-47bb-86e5-ffa2814099a7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012808_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21R-A115-07 0ef20000-2c8e-47bb-86e5-ffa2814099a7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012808_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21R-A115-07 0ef20000-2c8e-47bb-86e5-ffa2814099a7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012808_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21R-A115-07 0ef20000-2c8e-47bb-86e5-ffa2814099a7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420773.TCGA-BH-A0BR-01A-21R-A115-07.110608_SN254_0230_AC03JGABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21R-A115-07 0ef20000-2c8e-47bb-86e5-ffa2814099a7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420782.TCGA-BH-A0BR-01A-21R-A115-07.110608_SN254_0230_AC03JGABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21R-A115-07 0ef20000-2c8e-47bb-86e5-ffa2814099a7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420827.TCGA-BH-A0BR-01A-21R-A115-07.110608_SN254_0230_AC03JGABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21W-A12T-09 df82226e-2242-418b-9f5f-0a5e531826a4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-01A TCGA-BH-A0BR-01A-21W-A12T-09 df82226e-2242-418b-9f5f-0a5e531826a4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-10A TCGA-BH-A0BR-10A-01D-A10Z-02 43482352-7cdf-4fc4-b6ef-c48f3dd22f7f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-10A TCGA-BH-A0BR-10A-01D-A110-09 9a94cf94-c89a-4460-83de-0574acf85969 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-10A TCGA-BH-A0BR-10A-01D-A110-09 9a94cf94-c89a-4460-83de-0574acf85969 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-10A TCGA-BH-A0BR-10A-01D-A113-01 04ec86c1-d0b2-4a4f-9c6c-0875aa1023c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-10A TCGA-BH-A0BR-10A-01D-A113-01 04ec86c1-d0b2-4a4f-9c6c-0875aa1023c1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H03_735152.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0BR TCGA-BH-A0BR-10A TCGA-BH-A0BR-10A-01D-A113-01 04ec86c1-d0b2-4a4f-9c6c-0875aa1023c1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H03_735152.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-10A TCGA-BH-A0BR-10A-01D-A113-01 04ec86c1-d0b2-4a4f-9c6c-0875aa1023c1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H03_735152.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-10A TCGA-BH-A0BR-10A-01D-A113-01 04ec86c1-d0b2-4a4f-9c6c-0875aa1023c1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H03_735152.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-10A TCGA-BH-A0BR-10A-01D-A113-01 04ec86c1-d0b2-4a4f-9c6c-0875aa1023c1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H03_735152.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-10A TCGA-BH-A0BR-10A-01D-A113-01 04ec86c1-d0b2-4a4f-9c6c-0875aa1023c1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H03_735152.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-10A TCGA-BH-A0BR-10A-01D-A113-01 04ec86c1-d0b2-4a4f-9c6c-0875aa1023c1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H03_735152.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-10A TCGA-BH-A0BR-10A-01D-A113-01 04ec86c1-d0b2-4a4f-9c6c-0875aa1023c1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H03_735152.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0BR TCGA-BH-A0BR-10A TCGA-BH-A0BR-10A-01W-A12U-09 e9aabaaf-4c74-44ef-b965-af4b6d3781a9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11D-A12M-02 34fc2090-1090-41d3-a43c-d37cb5759ec5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11D-A12N-01 59d70e3c-da53-46e9-9f46-177223c25d95 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11D-A12N-01 59d70e3c-da53-46e9-9f46-177223c25d95 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A06_747912.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11D-A12N-01 59d70e3c-da53-46e9-9f46-177223c25d95 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A06_747912.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11D-A12N-01 59d70e3c-da53-46e9-9f46-177223c25d95 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A06_747912.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11D-A12N-01 59d70e3c-da53-46e9-9f46-177223c25d95 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A06_747912.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11D-A12N-01 59d70e3c-da53-46e9-9f46-177223c25d95 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A06_747912.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11D-A12N-01 59d70e3c-da53-46e9-9f46-177223c25d95 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A06_747912.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11D-A12N-01 59d70e3c-da53-46e9-9f46-177223c25d95 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A06_747912.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11D-A12N-01 59d70e3c-da53-46e9-9f46-177223c25d95 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A06_747912.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11D-A12Q-09 81e4b7a4-8d94-4d31-9c08-325ee04f5f36 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11D-A12Q-09 81e4b7a4-8d94-4d31-9c08-325ee04f5f36 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11D-A12R-05 5ed001b9-45ad-4a98-b8ac-85a8a3e8f5d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11D-A12R-05 5ed001b9-45ad-4a98-b8ac-85a8a3e8f5d6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324030_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11D-A12R-05 5ed001b9-45ad-4a98-b8ac-85a8a3e8f5d6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324030_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11D-A12R-05 5ed001b9-45ad-4a98-b8ac-85a8a3e8f5d6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-BH-A0BS-01A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11D-A12R-05 5ed001b9-45ad-4a98-b8ac-85a8a3e8f5d6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-BH-A0BS-01A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11R-A12O-13 ac4e1e91-448a-47a8-afda-0a1c0bdcfd30 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11R-A12O-13 ac4e1e91-448a-47a8-afda-0a1c0bdcfd30 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BS-01A-11R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11R-A12O-13 ac4e1e91-448a-47a8-afda-0a1c0bdcfd30 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BS-01A-11R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11R-A12P-07 354c08e2-61d3-4cfa-9d26-76d74dcfe44f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11R-A12P-07 354c08e2-61d3-4cfa-9d26-76d74dcfe44f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013060_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11R-A12P-07 354c08e2-61d3-4cfa-9d26-76d74dcfe44f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013060_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11R-A12P-07 354c08e2-61d3-4cfa-9d26-76d74dcfe44f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013060_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11R-A12P-07 354c08e2-61d3-4cfa-9d26-76d74dcfe44f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_435707.TCGA-BH-A0BS-01A-11R-A12P-07.110801_UNC10-SN254_0250_AC01YCABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11R-A12P-07 354c08e2-61d3-4cfa-9d26-76d74dcfe44f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_435715.TCGA-BH-A0BS-01A-11R-A12P-07.110801_UNC10-SN254_0250_AC01YCABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11R-A12P-07 354c08e2-61d3-4cfa-9d26-76d74dcfe44f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_435761.TCGA-BH-A0BS-01A-11R-A12P-07.110801_UNC10-SN254_0250_AC01YCABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-01A TCGA-BH-A0BS-01A-11W-A14O-09 3a3be3f9-eaa8-4912-b9c8-8f2ca415971e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11D-A12M-02 e8540293-0d37-4543-9117-a83ebd99e624 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11D-A12N-01 d4f1f42a-526a-4d2b-9ee3-aa9334916dd6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11D-A12N-01 d4f1f42a-526a-4d2b-9ee3-aa9334916dd6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B11_747940.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11D-A12N-01 d4f1f42a-526a-4d2b-9ee3-aa9334916dd6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B11_747940.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11D-A12N-01 d4f1f42a-526a-4d2b-9ee3-aa9334916dd6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B11_747940.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11D-A12N-01 d4f1f42a-526a-4d2b-9ee3-aa9334916dd6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B11_747940.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11D-A12N-01 d4f1f42a-526a-4d2b-9ee3-aa9334916dd6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B11_747940.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11D-A12N-01 d4f1f42a-526a-4d2b-9ee3-aa9334916dd6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B11_747940.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11D-A12N-01 d4f1f42a-526a-4d2b-9ee3-aa9334916dd6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B11_747940.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11D-A12N-01 d4f1f42a-526a-4d2b-9ee3-aa9334916dd6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B11_747940.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11D-A12Q-09 fec92c99-b092-4b58-add7-e698e2e4161d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11D-A12Q-09 fec92c99-b092-4b58-add7-e698e2e4161d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11D-A12R-05 ec312133-ea48-4fd4-b804-9f9390090490 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11D-A12R-05 ec312133-ea48-4fd4-b804-9f9390090490 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324072_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11D-A12R-05 ec312133-ea48-4fd4-b804-9f9390090490 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324072_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11D-A12R-05 ec312133-ea48-4fd4-b804-9f9390090490 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-BH-A0BS-11A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11D-A12R-05 ec312133-ea48-4fd4-b804-9f9390090490 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-BH-A0BS-11A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11R-A12O-13 e49002f6-6234-4464-baef-9a064d099c09 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11R-A12O-13 e49002f6-6234-4464-baef-9a064d099c09 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BS-11A-11R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11R-A12O-13 e49002f6-6234-4464-baef-9a064d099c09 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BS-11A-11R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11R-A12P-07 10d54893-647f-40a9-8aa7-602e04d55faf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11R-A12P-07 10d54893-647f-40a9-8aa7-602e04d55faf Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012944_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11R-A12P-07 10d54893-647f-40a9-8aa7-602e04d55faf Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012944_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11R-A12P-07 10d54893-647f-40a9-8aa7-602e04d55faf Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012944_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11R-A12P-07 10d54893-647f-40a9-8aa7-602e04d55faf RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408545.TCGA-BH-A0BS-11A-11R-A12P-07.110706_UNC12-SN629_0107_BD0DKWABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11R-A12P-07 10d54893-647f-40a9-8aa7-602e04d55faf RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408553.TCGA-BH-A0BS-11A-11R-A12P-07.110706_UNC12-SN629_0107_BD0DKWABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11R-A12P-07 10d54893-647f-40a9-8aa7-602e04d55faf RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408561.TCGA-BH-A0BS-11A-11R-A12P-07.110706_UNC12-SN629_0107_BD0DKWABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BS TCGA-BH-A0BS-11A TCGA-BH-A0BS-11A-11W-A14O-09 9eefe063-55e3-4437-a319-d1901f44be8f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11D-A12M-02 bd494bb2-81d2-499e-96af-db1e333cdf6b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11D-A12N-01 6ca5a3d2-bc1c-4d8b-932b-0d156d1dbaa3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11D-A12N-01 6ca5a3d2-bc1c-4d8b-932b-0d156d1dbaa3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G07_747950.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11D-A12N-01 6ca5a3d2-bc1c-4d8b-932b-0d156d1dbaa3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G07_747950.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11D-A12N-01 6ca5a3d2-bc1c-4d8b-932b-0d156d1dbaa3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G07_747950.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11D-A12N-01 6ca5a3d2-bc1c-4d8b-932b-0d156d1dbaa3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G07_747950.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11D-A12N-01 6ca5a3d2-bc1c-4d8b-932b-0d156d1dbaa3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G07_747950.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11D-A12N-01 6ca5a3d2-bc1c-4d8b-932b-0d156d1dbaa3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G07_747950.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11D-A12N-01 6ca5a3d2-bc1c-4d8b-932b-0d156d1dbaa3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G07_747950.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11D-A12N-01 6ca5a3d2-bc1c-4d8b-932b-0d156d1dbaa3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G07_747950.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11D-A12Q-09 2299036e-7099-4b53-9143-5935442c3310 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11D-A12Q-09 2299036e-7099-4b53-9143-5935442c3310 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11D-A12R-05 2716d64d-4eba-4be6-84be-3b5cb78b4f2a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11D-A12R-05 2716d64d-4eba-4be6-84be-3b5cb78b4f2a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324070_R05C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11D-A12R-05 2716d64d-4eba-4be6-84be-3b5cb78b4f2a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324070_R05C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11D-A12R-05 2716d64d-4eba-4be6-84be-3b5cb78b4f2a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-BH-A0BT-01A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11D-A12R-05 2716d64d-4eba-4be6-84be-3b5cb78b4f2a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-BH-A0BT-01A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11R-A12O-13 c8213cb0-f892-48e8-ba03-558714070f62 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11R-A12O-13 c8213cb0-f892-48e8-ba03-558714070f62 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BT-01A-11R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11R-A12O-13 c8213cb0-f892-48e8-ba03-558714070f62 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BT-01A-11R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11R-A12P-07 fe8764cf-04ee-480d-96ce-09d0d388f4f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11R-A12P-07 fe8764cf-04ee-480d-96ce-09d0d388f4f6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013068_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11R-A12P-07 fe8764cf-04ee-480d-96ce-09d0d388f4f6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013068_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11R-A12P-07 fe8764cf-04ee-480d-96ce-09d0d388f4f6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013068_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11R-A12P-07 fe8764cf-04ee-480d-96ce-09d0d388f4f6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_435607.TCGA-BH-A0BT-01A-11R-A12P-07.110801_UNC10-SN254_0250_AC01YCABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11R-A12P-07 fe8764cf-04ee-480d-96ce-09d0d388f4f6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_435616.TCGA-BH-A0BT-01A-11R-A12P-07.110801_UNC10-SN254_0250_AC01YCABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11R-A12P-07 fe8764cf-04ee-480d-96ce-09d0d388f4f6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_435710.TCGA-BH-A0BT-01A-11R-A12P-07.110801_UNC10-SN254_0250_AC01YCABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-01A TCGA-BH-A0BT-01A-11W-A14O-09 dad6d211-d8c1-4155-b1c4-2cf45562c5a3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-11A TCGA-BH-A0BT-11A-21D-A12M-02 4397c619-1ef2-4e5f-a1fb-f8fd1ad37c63 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-11A TCGA-BH-A0BT-11A-21D-A12N-01 72697a75-9f0f-4ac5-a4f0-e4ccf4884bab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-11A TCGA-BH-A0BT-11A-21D-A12N-01 72697a75-9f0f-4ac5-a4f0-e4ccf4884bab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G10_747886.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0BT TCGA-BH-A0BT-11A TCGA-BH-A0BT-11A-21D-A12N-01 72697a75-9f0f-4ac5-a4f0-e4ccf4884bab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G10_747886.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-11A TCGA-BH-A0BT-11A-21D-A12N-01 72697a75-9f0f-4ac5-a4f0-e4ccf4884bab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G10_747886.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-11A TCGA-BH-A0BT-11A-21D-A12N-01 72697a75-9f0f-4ac5-a4f0-e4ccf4884bab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G10_747886.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-11A TCGA-BH-A0BT-11A-21D-A12N-01 72697a75-9f0f-4ac5-a4f0-e4ccf4884bab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G10_747886.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-11A TCGA-BH-A0BT-11A-21D-A12N-01 72697a75-9f0f-4ac5-a4f0-e4ccf4884bab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G10_747886.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-11A TCGA-BH-A0BT-11A-21D-A12N-01 72697a75-9f0f-4ac5-a4f0-e4ccf4884bab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G10_747886.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-11A TCGA-BH-A0BT-11A-21D-A12N-01 72697a75-9f0f-4ac5-a4f0-e4ccf4884bab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G10_747886.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-11A TCGA-BH-A0BT-11A-21D-A12Q-09 24fe7169-ca64-498d-8445-4fd23dff34a8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-11A TCGA-BH-A0BT-11A-21D-A12Q-09 24fe7169-ca64-498d-8445-4fd23dff34a8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-11A TCGA-BH-A0BT-11A-21D-A12R-05 1853684a-e44e-4a70-bf2d-45e56c6b0cb0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-11A TCGA-BH-A0BT-11A-21D-A12R-05 1853684a-e44e-4a70-bf2d-45e56c6b0cb0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324030_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-11A TCGA-BH-A0BT-11A-21D-A12R-05 1853684a-e44e-4a70-bf2d-45e56c6b0cb0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324030_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-11A TCGA-BH-A0BT-11A-21D-A12R-05 1853684a-e44e-4a70-bf2d-45e56c6b0cb0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-BH-A0BT-11A-21D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-11A TCGA-BH-A0BT-11A-21D-A12R-05 1853684a-e44e-4a70-bf2d-45e56c6b0cb0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-BH-A0BT-11A-21D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-11A TCGA-BH-A0BT-11A-21R-A12O-13 0ae6b04e-b8eb-45b5-8188-788c915fbfa5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-11A TCGA-BH-A0BT-11A-21R-A12O-13 0ae6b04e-b8eb-45b5-8188-788c915fbfa5 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BT-11A-21R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-11A TCGA-BH-A0BT-11A-21R-A12O-13 0ae6b04e-b8eb-45b5-8188-788c915fbfa5 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BT-11A-21R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-11A TCGA-BH-A0BT-11A-21R-A12P-07 8e31c471-6f4b-4d2d-8594-5c2c91f6e5ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-11A TCGA-BH-A0BT-11A-21R-A12P-07 8e31c471-6f4b-4d2d-8594-5c2c91f6e5ef RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408546.TCGA-BH-A0BT-11A-21R-A12P-07.110706_UNC12-SN629_0107_BD0DKWABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-11A TCGA-BH-A0BT-11A-21R-A12P-07 8e31c471-6f4b-4d2d-8594-5c2c91f6e5ef RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408552.TCGA-BH-A0BT-11A-21R-A12P-07.110706_UNC12-SN629_0107_BD0DKWABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-11A TCGA-BH-A0BT-11A-21R-A12P-07 8e31c471-6f4b-4d2d-8594-5c2c91f6e5ef RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408560.TCGA-BH-A0BT-11A-21R-A12P-07.110706_UNC12-SN629_0107_BD0DKWABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BT TCGA-BH-A0BT-11A TCGA-BH-A0BT-11A-21W-A14O-09 b1ab2625-e2e0-4d3d-94dc-13e4c271b46b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11D-A00Y-05 865216cd-ceb6-42ea-b532-d7d8184fc79b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11D-A00Y-05 865216cd-ceb6-42ea-b532-d7d8184fc79b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-BH-A0BV-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11D-A00Y-05 865216cd-ceb6-42ea-b532-d7d8184fc79b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-BH-A0BV-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11D-A00Y-05 865216cd-ceb6-42ea-b532-d7d8184fc79b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-BH-A0BV-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11D-A011-01 800c72cb-4f3b-4ba0-bc8c-a1c62b0e943f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11D-A011-01 800c72cb-4f3b-4ba0-bc8c-a1c62b0e943f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C08_628586.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11D-A011-01 800c72cb-4f3b-4ba0-bc8c-a1c62b0e943f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C08_628586.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11D-A011-01 800c72cb-4f3b-4ba0-bc8c-a1c62b0e943f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C08_628586.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11D-A011-01 800c72cb-4f3b-4ba0-bc8c-a1c62b0e943f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C08_628586.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11D-A011-01 800c72cb-4f3b-4ba0-bc8c-a1c62b0e943f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C08_628586.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11D-A011-01 800c72cb-4f3b-4ba0-bc8c-a1c62b0e943f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C08_628586.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11D-A011-01 800c72cb-4f3b-4ba0-bc8c-a1c62b0e943f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C08_628586.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11D-A011-01 800c72cb-4f3b-4ba0-bc8c-a1c62b0e943f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_C08_628586.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11D-A015-09 39e8f723-b475-479a-9390-77e5cf832f81 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11D-A016-08 92165e17-b721-41cd-ad72-9a5c9674ceec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11D-A068-02 a1041490-1adf-4d7f-bf61-defadf5866f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11R-A00Z-07 6dc89d5b-7613-4a0f-bbdc-ba13f51d12cc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11R-A00Z-07 6dc89d5b-7613-4a0f-bbdc-ba13f51d12cc Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011882_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11R-A00Z-07 6dc89d5b-7613-4a0f-bbdc-ba13f51d12cc Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011882_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11R-A00Z-07 6dc89d5b-7613-4a0f-bbdc-ba13f51d12cc Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011882_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11R-A00Z-07 6dc89d5b-7613-4a0f-bbdc-ba13f51d12cc RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_653958.TCGA-BH-A0BV-01A-11R-A00Z-07.110304_UNC12-SN629_0065_AB05PGABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11R-A00Z-07 6dc89d5b-7613-4a0f-bbdc-ba13f51d12cc RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_654120.TCGA-BH-A0BV-01A-11R-A00Z-07.110304_UNC12-SN629_0065_AB05PGABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11R-A00Z-07 6dc89d5b-7613-4a0f-bbdc-ba13f51d12cc RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_654268.TCGA-BH-A0BV-01A-11R-A00Z-07.110304_UNC12-SN629_0065_AB05PGABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11R-A010-13 bee75682-bae5-4473-a33a-6aaba3330aad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11R-A010-13 bee75682-bae5-4473-a33a-6aaba3330aad miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0BV-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11R-A010-13 bee75682-bae5-4473-a33a-6aaba3330aad miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0BV-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11W-A019-09 7ac613ae-249a-4f24-9ecd-8a9b583b2966 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11W-A019-09 7ac613ae-249a-4f24-9ecd-8a9b583b2966 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11W-A020-08 f8eb28c0-e6e6-4b2f-905d-daeae3179b67 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11X-A023-09 3c8046dc-b25a-4c01-9012-b43dd01499ad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-01A TCGA-BH-A0BV-01A-11X-A024-08 96a9251e-9fa8-400f-a49a-45b4f189fcd9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-10A TCGA-BH-A0BV-10A-01D-A012-01 61c01f1c-021b-4f9b-b559-afe1966ba8fe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-10A TCGA-BH-A0BV-10A-01D-A012-01 61c01f1c-021b-4f9b-b559-afe1966ba8fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E04_628414.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-BH-A0BV TCGA-BH-A0BV-10A TCGA-BH-A0BV-10A-01D-A012-01 61c01f1c-021b-4f9b-b559-afe1966ba8fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E04_628414.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-10A TCGA-BH-A0BV-10A-01D-A012-01 61c01f1c-021b-4f9b-b559-afe1966ba8fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E04_628414.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-10A TCGA-BH-A0BV-10A-01D-A012-01 61c01f1c-021b-4f9b-b559-afe1966ba8fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E04_628414.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-10A TCGA-BH-A0BV-10A-01D-A012-01 61c01f1c-021b-4f9b-b559-afe1966ba8fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E04_628414.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-10A TCGA-BH-A0BV-10A-01D-A012-01 61c01f1c-021b-4f9b-b559-afe1966ba8fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E04_628414.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-10A TCGA-BH-A0BV-10A-01D-A012-01 61c01f1c-021b-4f9b-b559-afe1966ba8fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E04_628414.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-10A TCGA-BH-A0BV-10A-01D-A012-01 61c01f1c-021b-4f9b-b559-afe1966ba8fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_E04_628414.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-10A TCGA-BH-A0BV-10A-01D-A017-09 d0ab2276-ce24-4b5b-8e87-1596cddb50f3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-10A TCGA-BH-A0BV-10A-01D-A018-08 8e895fd3-fc7d-4753-a405-58ef2bb04c09 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-10A TCGA-BH-A0BV-10A-01D-A069-02 fb508dbf-eb0f-4076-b4c1-c06b2dd05c4e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-10A TCGA-BH-A0BV-10A-01W-A021-09 b843963e-eb76-4c5b-9b0d-e9c85ce8da9c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-10A TCGA-BH-A0BV-10A-01W-A021-09 b843963e-eb76-4c5b-9b0d-e9c85ce8da9c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-10A TCGA-BH-A0BV-10A-01W-A022-08 7169db17-b2da-4fff-b147-91a818a78b2a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-10A TCGA-BH-A0BV-10A-01X-A025-09 295e5dbd-bc8a-4235-abf6-2c15fee38b5e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-10A TCGA-BH-A0BV-10A-01X-A026-08 3d398d5e-6af1-4a2f-9caf-411fdfd20681 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31D-A091-02 3e3f2f52-52f8-4626-ab8f-0231a7a54677 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31D-A092-01 77d07509-54de-4bfa-b0cd-6186d85c1d93 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.after_5NN.copynumber.data.txt'. TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31D-A092-01 77d07509-54de-4bfa-b0cd-6186d85c1d93 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.after_5NN.copynumber.data.txt'. TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31D-A092-01 77d07509-54de-4bfa-b0cd-6186d85c1d93 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.after_5NN.copynumber.data.txt'. TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31D-A092-01 77d07509-54de-4bfa-b0cd-6186d85c1d93 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.after_5NN.copynumber.data.txt'. TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31D-A092-01 77d07509-54de-4bfa-b0cd-6186d85c1d93 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.after_5NN.copynumber.data.txt'. TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31D-A092-01 77d07509-54de-4bfa-b0cd-6186d85c1d93 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.after_5NN.copynumber.data.txt'. TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31D-A092-01 77d07509-54de-4bfa-b0cd-6186d85c1d93 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_H02_729740.after_5NN.copynumber.data.txt'. TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31D-A093-05 7ba4fbe8-bc9e-4b13-92b1-502f9f7df655 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31D-A100-09 1c8f4466-a9da-4685-aadc-42152e64a00b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31D-A10Q-05 52088dc7-859d-4896-8335-c96b13c7019f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31D-A10Q-05 52088dc7-859d-4896-8335-c96b13c7019f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0/6005486013_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0 47 07-NOV-11 04.04.17.697000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31D-A10Q-05 52088dc7-859d-4896-8335-c96b13c7019f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0/6005486013_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0 47 07-NOV-11 04.04.17.697000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31D-A10Q-05 52088dc7-859d-4896-8335-c96b13c7019f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.1.1.0/jhu-usc.edu_BRCA.HumanMethylation450.1.lvl-2.TCGA-BH-A0BV-11A-31D-A10Q-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.1.1.0 47 07-NOV-11 04.38.19.253000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31D-A10Q-05 52088dc7-859d-4896-8335-c96b13c7019f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.1.1.0/jhu-usc.edu_BRCA.HumanMethylation450.1.lvl-3.TCGA-BH-A0BV-11A-31D-A10Q-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.1.1.0 47 07-NOV-11 05.34.09.862000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31R-A089-07 452bf9da-c065-4d95-8272-adce3684a9e9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31R-A089-07 452bf9da-c065-4d95-8272-adce3684a9e9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012658_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 47 02-NOV-10 12.30.07.283000000 AM TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31R-A089-07 452bf9da-c065-4d95-8272-adce3684a9e9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012658_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 47 02-NOV-10 12.25.38.097000000 AM TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31R-A089-07 452bf9da-c065-4d95-8272-adce3684a9e9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012658_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 47 02-NOV-10 12.26.20.805000000 AM TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31R-A089-07 452bf9da-c065-4d95-8272-adce3684a9e9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_492726.TCGA-BH-A0BV-11A-31R-A089-07.110912_UNC13-SN749_0111_AD0DEAABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31R-A089-07 452bf9da-c065-4d95-8272-adce3684a9e9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_492730.TCGA-BH-A0BV-11A-31R-A089-07.110912_UNC13-SN749_0111_AD0DEAABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31R-A089-07 452bf9da-c065-4d95-8272-adce3684a9e9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_492752.TCGA-BH-A0BV-11A-31R-A089-07.110912_UNC13-SN749_0111_AD0DEAABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 47 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31R-A090-13 e17db203-01fb-4b2a-90f7-b433e05551ae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31R-A090-13 e17db203-01fb-4b2a-90f7-b433e05551ae miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0BV-11A-31R-A090-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31R-A090-13 e17db203-01fb-4b2a-90f7-b433e05551ae miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0BV-11A-31R-A090-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31W-A100-09 0af2a93f-7254-4396-af65-c45fcbdc9f49 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31W-A100-09 0af2a93f-7254-4396-af65-c45fcbdc9f49 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BV TCGA-BH-A0BV-11A TCGA-BH-A0BV-11A-31X-A100-09 2510fc2a-8c8d-4cbb-b6b5-31c8235d4f86 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11D-A10X-02 78eafbc6-920f-483e-b964-40ffdebf991a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11D-A10Y-09 07b5141f-ac79-439b-883b-b0183bbe7ff5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11D-A10Y-09 07b5141f-ac79-439b-883b-b0183bbe7ff5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11D-A111-01 75a4c81e-50fb-4ea4-b973-9e6e666f0e19 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11D-A111-01 75a4c81e-50fb-4ea4-b973-9e6e666f0e19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G04_735070.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11D-A111-01 75a4c81e-50fb-4ea4-b973-9e6e666f0e19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G04_735070.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11D-A111-01 75a4c81e-50fb-4ea4-b973-9e6e666f0e19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G04_735070.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11D-A111-01 75a4c81e-50fb-4ea4-b973-9e6e666f0e19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G04_735070.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11D-A111-01 75a4c81e-50fb-4ea4-b973-9e6e666f0e19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G04_735070.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11D-A111-01 75a4c81e-50fb-4ea4-b973-9e6e666f0e19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G04_735070.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11D-A111-01 75a4c81e-50fb-4ea4-b973-9e6e666f0e19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G04_735070.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11D-A111-01 75a4c81e-50fb-4ea4-b973-9e6e666f0e19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G04_735070.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11D-A112-05 48c2e0f9-e65e-46f6-ae7d-e1e73e5969a4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11D-A112-05 48c2e0f9-e65e-46f6-ae7d-e1e73e5969a4 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-BH-A0BW-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11D-A112-05 48c2e0f9-e65e-46f6-ae7d-e1e73e5969a4 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-BH-A0BW-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11D-A112-05 48c2e0f9-e65e-46f6-ae7d-e1e73e5969a4 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-BH-A0BW-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11R-A114-13 4c067338-e420-4b0d-b3e7-001c90a452a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11R-A114-13 4c067338-e420-4b0d-b3e7-001c90a452a1 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BW-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11R-A114-13 4c067338-e420-4b0d-b3e7-001c90a452a1 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BW-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11R-A115-07 7e84df9f-1da5-4add-a5e8-a9d9d8af409c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11R-A115-07 7e84df9f-1da5-4add-a5e8-a9d9d8af409c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012819_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11R-A115-07 7e84df9f-1da5-4add-a5e8-a9d9d8af409c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012819_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11R-A115-07 7e84df9f-1da5-4add-a5e8-a9d9d8af409c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012819_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11R-A115-07 7e84df9f-1da5-4add-a5e8-a9d9d8af409c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421458.TCGA-BH-A0BW-01A-11R-A115-07.110527_UNC10-SN254_0224_AD0CPKABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11R-A115-07 7e84df9f-1da5-4add-a5e8-a9d9d8af409c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421461.TCGA-BH-A0BW-01A-11R-A115-07.110527_UNC10-SN254_0224_AD0CPKABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11R-A115-07 7e84df9f-1da5-4add-a5e8-a9d9d8af409c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421491.TCGA-BH-A0BW-01A-11R-A115-07.110527_UNC10-SN254_0224_AD0CPKABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-01A TCGA-BH-A0BW-01A-11W-A12T-09 536ed1d7-a072-4cc4-8a7d-0a558360a453 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-10A TCGA-BH-A0BW-10A-01D-A10Z-02 6da1e935-c67b-453d-bfa5-e6595fd705a5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-10A TCGA-BH-A0BW-10A-01D-A110-09 4fe9e340-5314-4633-befe-c09aad28d7bf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-10A TCGA-BH-A0BW-10A-01D-A110-09 4fe9e340-5314-4633-befe-c09aad28d7bf Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-10A TCGA-BH-A0BW-10A-01D-A113-01 562ece70-a0ff-46f9-96c9-16e0d6678b72 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-10A TCGA-BH-A0BW-10A-01D-A113-01 562ece70-a0ff-46f9-96c9-16e0d6678b72 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A02_735170.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0BW TCGA-BH-A0BW-10A TCGA-BH-A0BW-10A-01D-A113-01 562ece70-a0ff-46f9-96c9-16e0d6678b72 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A02_735170.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-10A TCGA-BH-A0BW-10A-01D-A113-01 562ece70-a0ff-46f9-96c9-16e0d6678b72 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A02_735170.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-10A TCGA-BH-A0BW-10A-01D-A113-01 562ece70-a0ff-46f9-96c9-16e0d6678b72 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A02_735170.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-10A TCGA-BH-A0BW-10A-01D-A113-01 562ece70-a0ff-46f9-96c9-16e0d6678b72 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A02_735170.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-10A TCGA-BH-A0BW-10A-01D-A113-01 562ece70-a0ff-46f9-96c9-16e0d6678b72 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A02_735170.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-10A TCGA-BH-A0BW-10A-01D-A113-01 562ece70-a0ff-46f9-96c9-16e0d6678b72 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A02_735170.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-10A TCGA-BH-A0BW-10A-01D-A113-01 562ece70-a0ff-46f9-96c9-16e0d6678b72 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A02_735170.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-10A TCGA-BH-A0BW-10A-01W-A12U-09 1a410d95-4705-47d2-8592-99ca2fe3632e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12D-A10X-02 7267b1c9-88bf-42d5-ae02-f8e2ebe08ada Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12D-A10Y-09 6c61b0f7-35a3-4eb2-9a94-0d3103354970 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12D-A10Y-09 6c61b0f7-35a3-4eb2-9a94-0d3103354970 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12D-A111-01 383473b3-d02d-4303-921e-7a5f7f5b5f8c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12D-A111-01 383473b3-d02d-4303-921e-7a5f7f5b5f8c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G03_735058.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12D-A111-01 383473b3-d02d-4303-921e-7a5f7f5b5f8c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G03_735058.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12D-A111-01 383473b3-d02d-4303-921e-7a5f7f5b5f8c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G03_735058.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12D-A111-01 383473b3-d02d-4303-921e-7a5f7f5b5f8c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G03_735058.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12D-A111-01 383473b3-d02d-4303-921e-7a5f7f5b5f8c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G03_735058.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12D-A111-01 383473b3-d02d-4303-921e-7a5f7f5b5f8c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G03_735058.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12D-A111-01 383473b3-d02d-4303-921e-7a5f7f5b5f8c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G03_735058.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12D-A111-01 383473b3-d02d-4303-921e-7a5f7f5b5f8c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G03_735058.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12D-A112-05 7ff3ab06-cf94-44d5-a0c4-dc4b31551403 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12D-A112-05 7ff3ab06-cf94-44d5-a0c4-dc4b31551403 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-BH-A0BW-11A-12D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12D-A112-05 7ff3ab06-cf94-44d5-a0c4-dc4b31551403 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-BH-A0BW-11A-12D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12D-A112-05 7ff3ab06-cf94-44d5-a0c4-dc4b31551403 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-BH-A0BW-11A-12D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12R-A114-13 56be9aba-6ea3-4018-82d1-a20a96278272 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12R-A114-13 56be9aba-6ea3-4018-82d1-a20a96278272 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BW-11A-12R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12R-A114-13 56be9aba-6ea3-4018-82d1-a20a96278272 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BW-11A-12R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12R-A115-07 ca5076dc-0fb2-444f-b34f-305c8479cba3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12R-A115-07 ca5076dc-0fb2-444f-b34f-305c8479cba3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012830_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12R-A115-07 ca5076dc-0fb2-444f-b34f-305c8479cba3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012830_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12R-A115-07 ca5076dc-0fb2-444f-b34f-305c8479cba3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012830_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12R-A115-07 ca5076dc-0fb2-444f-b34f-305c8479cba3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421446.TCGA-BH-A0BW-11A-12R-A115-07.110527_UNC10-SN254_0224_AD0CPKABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12R-A115-07 ca5076dc-0fb2-444f-b34f-305c8479cba3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421470.TCGA-BH-A0BW-11A-12R-A115-07.110527_UNC10-SN254_0224_AD0CPKABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12R-A115-07 ca5076dc-0fb2-444f-b34f-305c8479cba3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421496.TCGA-BH-A0BW-11A-12R-A115-07.110527_UNC10-SN254_0224_AD0CPKABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BW TCGA-BH-A0BW-11A TCGA-BH-A0BW-11A-12W-A12T-09 2aa456e9-c172-4e29-aa9c-745255cdbd74 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31D-A12M-02 4bcb6864-f551-434c-af49-4f71052571cd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31D-A12N-01 6eee21c1-5bc4-4eb7-bf40-151fc831d5b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31D-A12N-01 6eee21c1-5bc4-4eb7-bf40-151fc831d5b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C03_748014.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31D-A12N-01 6eee21c1-5bc4-4eb7-bf40-151fc831d5b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C03_748014.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31D-A12N-01 6eee21c1-5bc4-4eb7-bf40-151fc831d5b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C03_748014.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31D-A12N-01 6eee21c1-5bc4-4eb7-bf40-151fc831d5b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C03_748014.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31D-A12N-01 6eee21c1-5bc4-4eb7-bf40-151fc831d5b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C03_748014.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31D-A12N-01 6eee21c1-5bc4-4eb7-bf40-151fc831d5b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C03_748014.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31D-A12N-01 6eee21c1-5bc4-4eb7-bf40-151fc831d5b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C03_748014.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31D-A12N-01 6eee21c1-5bc4-4eb7-bf40-151fc831d5b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C03_748014.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31D-A12Q-09 1f07765a-3f2b-4b6f-88ef-0d7aab17a758 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31D-A12Q-09 1f07765a-3f2b-4b6f-88ef-0d7aab17a758 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31D-A12R-05 4da611cc-9dd8-43fc-a220-30140e218008 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31D-A12R-05 4da611cc-9dd8-43fc-a220-30140e218008 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324030_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31D-A12R-05 4da611cc-9dd8-43fc-a220-30140e218008 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324030_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31D-A12R-05 4da611cc-9dd8-43fc-a220-30140e218008 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-BH-A0BZ-01A-31D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31D-A12R-05 4da611cc-9dd8-43fc-a220-30140e218008 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-BH-A0BZ-01A-31D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31R-A12O-13 e7facab8-4f72-4a04-abdc-5fd50144c926 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31R-A12O-13 e7facab8-4f72-4a04-abdc-5fd50144c926 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BZ-01A-31R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31R-A12O-13 e7facab8-4f72-4a04-abdc-5fd50144c926 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BZ-01A-31R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31R-A12P-07 317ffb84-f4a8-435b-907b-b05587d6515e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31R-A12P-07 317ffb84-f4a8-435b-907b-b05587d6515e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012941_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31R-A12P-07 317ffb84-f4a8-435b-907b-b05587d6515e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012941_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31R-A12P-07 317ffb84-f4a8-435b-907b-b05587d6515e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012941_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31R-A12P-07 317ffb84-f4a8-435b-907b-b05587d6515e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_487603.TCGA-BH-A0BZ-01A-31R-A12P-07.110706_UNC12-SN629_0107_BD0DKWABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31R-A12P-07 317ffb84-f4a8-435b-907b-b05587d6515e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_487607.TCGA-BH-A0BZ-01A-31R-A12P-07.110706_UNC12-SN629_0107_BD0DKWABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31R-A12P-07 317ffb84-f4a8-435b-907b-b05587d6515e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_487620.TCGA-BH-A0BZ-01A-31R-A12P-07.110706_UNC12-SN629_0107_BD0DKWABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-01A TCGA-BH-A0BZ-01A-31W-A14O-09 d7ef2454-64ba-4469-8a99-0cd1cd8a8e22 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61D-A12M-02 97efa130-537e-4f2c-8ae9-c067fcb7402d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61D-A12N-01 2efc8122-8428-40db-8609-8d54ed08bcd1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61D-A12N-01 2efc8122-8428-40db-8609-8d54ed08bcd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C06_748044.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61D-A12N-01 2efc8122-8428-40db-8609-8d54ed08bcd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C06_748044.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61D-A12N-01 2efc8122-8428-40db-8609-8d54ed08bcd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C06_748044.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61D-A12N-01 2efc8122-8428-40db-8609-8d54ed08bcd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C06_748044.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61D-A12N-01 2efc8122-8428-40db-8609-8d54ed08bcd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C06_748044.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61D-A12N-01 2efc8122-8428-40db-8609-8d54ed08bcd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C06_748044.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61D-A12N-01 2efc8122-8428-40db-8609-8d54ed08bcd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C06_748044.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61D-A12N-01 2efc8122-8428-40db-8609-8d54ed08bcd1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C06_748044.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61D-A12Q-09 be00304b-7a7a-464c-b5f7-d784d0c2c0ab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61D-A12Q-09 be00304b-7a7a-464c-b5f7-d784d0c2c0ab Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61D-A12R-05 d5af0a13-acfa-43be-bf2a-db978e398e4a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61D-A12R-05 d5af0a13-acfa-43be-bf2a-db978e398e4a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324037_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61D-A12R-05 d5af0a13-acfa-43be-bf2a-db978e398e4a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324037_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61D-A12R-05 d5af0a13-acfa-43be-bf2a-db978e398e4a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-BH-A0BZ-11A-61D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61D-A12R-05 d5af0a13-acfa-43be-bf2a-db978e398e4a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-BH-A0BZ-11A-61D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61R-A12O-13 2f9d62b4-f34e-4fae-9afa-8c8360532ff7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61R-A12O-13 2f9d62b4-f34e-4fae-9afa-8c8360532ff7 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BZ-11A-61R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61R-A12O-13 2f9d62b4-f34e-4fae-9afa-8c8360532ff7 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0BZ-11A-61R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61R-A12P-07 561e0da7-0e2c-430c-8a54-c9a3535a1679 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61R-A12P-07 561e0da7-0e2c-430c-8a54-c9a3535a1679 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012957_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61R-A12P-07 561e0da7-0e2c-430c-8a54-c9a3535a1679 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012957_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61R-A12P-07 561e0da7-0e2c-430c-8a54-c9a3535a1679 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012957_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61R-A12P-07 561e0da7-0e2c-430c-8a54-c9a3535a1679 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408153.TCGA-BH-A0BZ-11A-61R-A12P-07.110725_UNC11-SN627_0128_AB0AYGABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61R-A12P-07 561e0da7-0e2c-430c-8a54-c9a3535a1679 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408188.TCGA-BH-A0BZ-11A-61R-A12P-07.110725_UNC11-SN627_0128_AB0AYGABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61R-A12P-07 561e0da7-0e2c-430c-8a54-c9a3535a1679 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408197.TCGA-BH-A0BZ-11A-61R-A12P-07.110725_UNC11-SN627_0128_AB0AYGABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0BZ TCGA-BH-A0BZ-11A TCGA-BH-A0BZ-11A-61W-A14O-09 da433e14-1898-4638-9b9f-4ac64dc5af22 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0BZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21D-A058-05 aec9bfd1-57da-435d-b3e0-e87634eb4825 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21D-A059-01 be4a4bb4-c86e-4dce-9c49-9f71eba44d32 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21D-A059-01 be4a4bb4-c86e-4dce-9c49-9f71eba44d32 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H04_697174.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21D-A059-01 be4a4bb4-c86e-4dce-9c49-9f71eba44d32 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H04_697174.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21D-A059-01 be4a4bb4-c86e-4dce-9c49-9f71eba44d32 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H04_697174.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21D-A059-01 be4a4bb4-c86e-4dce-9c49-9f71eba44d32 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H04_697174.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21D-A059-01 be4a4bb4-c86e-4dce-9c49-9f71eba44d32 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H04_697174.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21D-A059-01 be4a4bb4-c86e-4dce-9c49-9f71eba44d32 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H04_697174.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21D-A059-01 be4a4bb4-c86e-4dce-9c49-9f71eba44d32 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H04_697174.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21D-A059-01 be4a4bb4-c86e-4dce-9c49-9f71eba44d32 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H04_697174.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21D-A060-02 45cd8eed-4c39-46a2-9249-f50b7af65646 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21D-A074-08 0c48a7d3-aec4-44d5-a48f-17f81ee2523a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21D-A075-09 f96eceb6-467a-414a-8480-6397e8574f3c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21D-A10P-05 290a1432-421c-4190-84b3-1a3c02606558 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21D-A10P-05 290a1432-421c-4190-84b3-1a3c02606558 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486023_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21D-A10P-05 290a1432-421c-4190-84b3-1a3c02606558 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486023_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21D-A10P-05 290a1432-421c-4190-84b3-1a3c02606558 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0C0-01A-21D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21D-A10P-05 290a1432-421c-4190-84b3-1a3c02606558 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0C0-01A-21D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21R-A056-07 f8ac9655-03ed-4e14-a4d3-88f63ef6bf7c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21R-A056-07 f8ac9655-03ed-4e14-a4d3-88f63ef6bf7c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012485_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21R-A056-07 f8ac9655-03ed-4e14-a4d3-88f63ef6bf7c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012485_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21R-A056-07 f8ac9655-03ed-4e14-a4d3-88f63ef6bf7c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012485_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21R-A056-07 f8ac9655-03ed-4e14-a4d3-88f63ef6bf7c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443082.TCGA-BH-A0C0-01A-21R-A056-07.110325_UNC11-SN627_0070_AB02DVABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21R-A056-07 f8ac9655-03ed-4e14-a4d3-88f63ef6bf7c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443088.TCGA-BH-A0C0-01A-21R-A056-07.110325_UNC11-SN627_0070_AB02DVABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21R-A056-07 f8ac9655-03ed-4e14-a4d3-88f63ef6bf7c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443245.TCGA-BH-A0C0-01A-21R-A056-07.110325_UNC11-SN627_0070_AB02DVABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21R-A057-13 61b378bb-751d-43c8-b56e-5b60401cb3b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21R-A057-13 61b378bb-751d-43c8-b56e-5b60401cb3b2 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0C0-01A-21R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21R-A057-13 61b378bb-751d-43c8-b56e-5b60401cb3b2 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0C0-01A-21R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21W-A070-08 7a68485b-90bc-40b0-bed6-2455ea76a5f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21W-A071-09 cb9d68dd-d159-4a7e-b914-18d2498b19d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21W-A071-09 cb9d68dd-d159-4a7e-b914-18d2498b19d6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 61 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21W-A071-09 cb9d68dd-d159-4a7e-b914-18d2498b19d6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21X-A072-08 60f97516-9b1c-464e-b637-9b0542c99130 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-01A TCGA-BH-A0C0-01A-21X-A073-09 782de06c-f63d-4b9d-8494-2d733135e83c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-10A TCGA-BH-A0C0-10A-01D-A059-01 c0058d8b-131a-41f9-87eb-7e8fbd80f062 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-10A TCGA-BH-A0C0-10A-01D-A059-01 c0058d8b-131a-41f9-87eb-7e8fbd80f062 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E01_697052.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0C0 TCGA-BH-A0C0-10A TCGA-BH-A0C0-10A-01D-A059-01 c0058d8b-131a-41f9-87eb-7e8fbd80f062 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E01_697052.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-10A TCGA-BH-A0C0-10A-01D-A059-01 c0058d8b-131a-41f9-87eb-7e8fbd80f062 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E01_697052.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-10A TCGA-BH-A0C0-10A-01D-A059-01 c0058d8b-131a-41f9-87eb-7e8fbd80f062 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E01_697052.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-10A TCGA-BH-A0C0-10A-01D-A059-01 c0058d8b-131a-41f9-87eb-7e8fbd80f062 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E01_697052.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-10A TCGA-BH-A0C0-10A-01D-A059-01 c0058d8b-131a-41f9-87eb-7e8fbd80f062 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E01_697052.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-10A TCGA-BH-A0C0-10A-01D-A059-01 c0058d8b-131a-41f9-87eb-7e8fbd80f062 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E01_697052.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-10A TCGA-BH-A0C0-10A-01D-A059-01 c0058d8b-131a-41f9-87eb-7e8fbd80f062 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_E01_697052.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-10A TCGA-BH-A0C0-10A-01D-A060-02 aca5f1e6-adf4-4604-8945-142e41b74045 Complete Clinical Set bio 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1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-10A TCGA-BH-A0C0-10A-01W-A070-08 ad39beda-9d4f-4da0-b89d-6ec5e68a9753 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-10A TCGA-BH-A0C0-10A-01W-A071-09 58a1d50c-1674-4db6-8ed7-d2aa04826142 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-10A TCGA-BH-A0C0-10A-01W-A071-09 58a1d50c-1674-4db6-8ed7-d2aa04826142 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 61 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-10A TCGA-BH-A0C0-10A-01W-A071-09 58a1d50c-1674-4db6-8ed7-d2aa04826142 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-10A TCGA-BH-A0C0-10A-01X-A072-08 b499a7ad-6f7a-429e-92ca-2888844a485d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-10A TCGA-BH-A0C0-10A-01X-A073-09 dd3a2dae-b575-4172-bebc-fbb2e1d75dd1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21D-A091-02 fab72c0d-0483-436c-8818-7a8332709bfc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21D-A092-01 9064b4c5-d3d4-46c1-85bd-bdacb338ff6c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21D-A092-01 9064b4c5-d3d4-46c1-85bd-bdacb338ff6c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G10_729670.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21D-A092-01 9064b4c5-d3d4-46c1-85bd-bdacb338ff6c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G10_729670.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21D-A092-01 9064b4c5-d3d4-46c1-85bd-bdacb338ff6c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G10_729670.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21D-A092-01 9064b4c5-d3d4-46c1-85bd-bdacb338ff6c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G10_729670.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21D-A092-01 9064b4c5-d3d4-46c1-85bd-bdacb338ff6c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G10_729670.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21D-A092-01 9064b4c5-d3d4-46c1-85bd-bdacb338ff6c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G10_729670.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21D-A092-01 9064b4c5-d3d4-46c1-85bd-bdacb338ff6c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G10_729670.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21D-A092-01 9064b4c5-d3d4-46c1-85bd-bdacb338ff6c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G10_729670.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21D-A093-05 f034166f-7f98-4e74-a97c-738c0aabed7e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21D-A100-09 9e169622-255b-4010-a1bb-a92dc000edf1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21D-A10Q-05 a711bac4-f7eb-4ca6-863a-8892e908314c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21D-A10Q-05 a711bac4-f7eb-4ca6-863a-8892e908314c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486011_R05C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21D-A10Q-05 a711bac4-f7eb-4ca6-863a-8892e908314c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486011_R05C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21D-A10Q-05 a711bac4-f7eb-4ca6-863a-8892e908314c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0C0-11A-21D-A10Q-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21D-A10Q-05 a711bac4-f7eb-4ca6-863a-8892e908314c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0C0-11A-21D-A10Q-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21R-A089-07 86c4b2fd-d034-469d-adfa-712055f30dc3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21R-A089-07 86c4b2fd-d034-469d-adfa-712055f30dc3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012661_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 61 02-NOV-10 12.30.07.283000000 AM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21R-A089-07 86c4b2fd-d034-469d-adfa-712055f30dc3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012661_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 61 02-NOV-10 12.25.38.097000000 AM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21R-A089-07 86c4b2fd-d034-469d-adfa-712055f30dc3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012661_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 61 02-NOV-10 12.26.20.805000000 AM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21R-A089-07 86c4b2fd-d034-469d-adfa-712055f30dc3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_492687.TCGA-BH-A0C0-11A-21R-A089-07.110912_UNC13-SN749_0111_AD0DEAABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21R-A089-07 86c4b2fd-d034-469d-adfa-712055f30dc3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_492728.TCGA-BH-A0C0-11A-21R-A089-07.110912_UNC13-SN749_0111_AD0DEAABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21R-A089-07 86c4b2fd-d034-469d-adfa-712055f30dc3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_492782.TCGA-BH-A0C0-11A-21R-A089-07.110912_UNC13-SN749_0111_AD0DEAABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21R-A090-13 7d8a5d9f-299f-41f9-b8ab-1d48e074d222 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21R-A090-13 7d8a5d9f-299f-41f9-b8ab-1d48e074d222 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0C0-11A-21R-A090-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21R-A090-13 7d8a5d9f-299f-41f9-b8ab-1d48e074d222 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0C0-11A-21R-A090-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21W-A100-09 c300b8f1-4a58-4c24-87ed-07654388f249 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21W-A100-09 c300b8f1-4a58-4c24-87ed-07654388f249 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 61 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21W-A100-09 c300b8f1-4a58-4c24-87ed-07654388f249 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0C0 TCGA-BH-A0C0-11A TCGA-BH-A0C0-11A-21X-A100-09 dcae6a94-a04c-47dd-9dab-d33e22668c5c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11D-A129-02 ee9f0dd4-cf02-454f-95b5-104eb906641e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11D-A12A-01 d2046f6d-cec0-4e39-a437-8be0a260cfa4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11D-A12A-01 d2046f6d-cec0-4e39-a437-8be0a260cfa4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B06_741410.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11D-A12A-01 d2046f6d-cec0-4e39-a437-8be0a260cfa4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B06_741410.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11D-A12A-01 d2046f6d-cec0-4e39-a437-8be0a260cfa4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B06_741410.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11D-A12A-01 d2046f6d-cec0-4e39-a437-8be0a260cfa4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B06_741410.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11D-A12A-01 d2046f6d-cec0-4e39-a437-8be0a260cfa4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B06_741410.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11D-A12A-01 d2046f6d-cec0-4e39-a437-8be0a260cfa4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B06_741410.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11D-A12A-01 d2046f6d-cec0-4e39-a437-8be0a260cfa4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B06_741410.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11D-A12A-01 d2046f6d-cec0-4e39-a437-8be0a260cfa4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B06_741410.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11D-A12B-09 adebc709-8059-43c3-ad0e-a102fa1536ff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11D-A12B-09 adebc709-8059-43c3-ad0e-a102fa1536ff Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11D-A12E-05 504d8ffa-177c-4324-9761-10456ad19e55 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11D-A12E-05 504d8ffa-177c-4324-9761-10456ad19e55 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A0C1-01B-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11D-A12E-05 504d8ffa-177c-4324-9761-10456ad19e55 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A0C1-01B-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11D-A12E-05 504d8ffa-177c-4324-9761-10456ad19e55 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A0C1-01B-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11R-A12C-13 1421e3d8-66ac-4484-b72c-9ecbc3539ff6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11R-A12C-13 1421e3d8-66ac-4484-b72c-9ecbc3539ff6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0C1-01B-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11R-A12C-13 1421e3d8-66ac-4484-b72c-9ecbc3539ff6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0C1-01B-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11R-A12D-07 73b732bb-f387-4618-a2a3-8c7db1c75fd8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11R-A12D-07 73b732bb-f387-4618-a2a3-8c7db1c75fd8 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012880_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11R-A12D-07 73b732bb-f387-4618-a2a3-8c7db1c75fd8 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012880_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11R-A12D-07 73b732bb-f387-4618-a2a3-8c7db1c75fd8 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012880_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11R-A12D-07 73b732bb-f387-4618-a2a3-8c7db1c75fd8 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439426.TCGA-BH-A0C1-01B-11R-A12D-07.110715_UNC14-SN744_0142_AB099EABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11R-A12D-07 73b732bb-f387-4618-a2a3-8c7db1c75fd8 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439483.TCGA-BH-A0C1-01B-11R-A12D-07.110715_UNC14-SN744_0142_AB099EABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11R-A12D-07 73b732bb-f387-4618-a2a3-8c7db1c75fd8 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439540.TCGA-BH-A0C1-01B-11R-A12D-07.110715_UNC14-SN744_0142_AB099EABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-01B TCGA-BH-A0C1-01B-11W-A12S-09 4d2df476-1b4a-43a4-bd60-561241b09775 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-10A TCGA-BH-A0C1-10A-01D-A129-02 1c3cc747-320f-4411-83f3-45b08dd97fde Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-10A TCGA-BH-A0C1-10A-01D-A12A-01 fe24faf9-2238-488b-bde4-d1d66782cd10 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-10A TCGA-BH-A0C1-10A-01D-A12A-01 fe24faf9-2238-488b-bde4-d1d66782cd10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A06_741506.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A0C1 TCGA-BH-A0C1-10A TCGA-BH-A0C1-10A-01D-A12A-01 fe24faf9-2238-488b-bde4-d1d66782cd10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A06_741506.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-10A TCGA-BH-A0C1-10A-01D-A12A-01 fe24faf9-2238-488b-bde4-d1d66782cd10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A06_741506.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-10A TCGA-BH-A0C1-10A-01D-A12A-01 fe24faf9-2238-488b-bde4-d1d66782cd10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A06_741506.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-10A TCGA-BH-A0C1-10A-01D-A12A-01 fe24faf9-2238-488b-bde4-d1d66782cd10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A06_741506.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-10A TCGA-BH-A0C1-10A-01D-A12A-01 fe24faf9-2238-488b-bde4-d1d66782cd10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A06_741506.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-10A TCGA-BH-A0C1-10A-01D-A12A-01 fe24faf9-2238-488b-bde4-d1d66782cd10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A06_741506.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-10A TCGA-BH-A0C1-10A-01D-A12A-01 fe24faf9-2238-488b-bde4-d1d66782cd10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A06_741506.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-10A TCGA-BH-A0C1-10A-01D-A12B-09 5298995d-f21e-48f8-8696-0fb2e192693a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-10A TCGA-BH-A0C1-10A-01D-A12B-09 5298995d-f21e-48f8-8696-0fb2e192693a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0C1 TCGA-BH-A0C1-10A TCGA-BH-A0C1-10A-01W-A12S-09 0ba8a7df-1b16-4b9f-b3b9-d0eb88d23087 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21D-A12M-02 d3b5b2f1-3a99-4245-afad-40047c4c44ae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21D-A12N-01 40aac58d-9d3d-4cc3-ab4b-c02b28b8fc5f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21D-A12N-01 40aac58d-9d3d-4cc3-ab4b-c02b28b8fc5f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C09_748028.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21D-A12N-01 40aac58d-9d3d-4cc3-ab4b-c02b28b8fc5f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C09_748028.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21D-A12N-01 40aac58d-9d3d-4cc3-ab4b-c02b28b8fc5f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C09_748028.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21D-A12N-01 40aac58d-9d3d-4cc3-ab4b-c02b28b8fc5f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C09_748028.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21D-A12N-01 40aac58d-9d3d-4cc3-ab4b-c02b28b8fc5f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C09_748028.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21D-A12N-01 40aac58d-9d3d-4cc3-ab4b-c02b28b8fc5f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C09_748028.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21D-A12N-01 40aac58d-9d3d-4cc3-ab4b-c02b28b8fc5f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C09_748028.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21D-A12N-01 40aac58d-9d3d-4cc3-ab4b-c02b28b8fc5f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C09_748028.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21D-A12Q-09 ec57ee0f-949e-4eee-91c2-dd129d657065 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21D-A12Q-09 ec57ee0f-949e-4eee-91c2-dd129d657065 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21D-A12R-05 fee0245d-1292-4a5f-88b4-79606996a536 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21D-A12R-05 fee0245d-1292-4a5f-88b4-79606996a536 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324030_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21D-A12R-05 fee0245d-1292-4a5f-88b4-79606996a536 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324030_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21D-A12R-05 fee0245d-1292-4a5f-88b4-79606996a536 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-BH-A0C3-01A-21D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21D-A12R-05 fee0245d-1292-4a5f-88b4-79606996a536 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-BH-A0C3-01A-21D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21R-A12O-13 a150022e-d6a8-4d2d-8d21-57b85790c180 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21R-A12O-13 a150022e-d6a8-4d2d-8d21-57b85790c180 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0C3-01A-21R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21R-A12O-13 a150022e-d6a8-4d2d-8d21-57b85790c180 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0C3-01A-21R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21R-A12P-07 52a863fe-b210-456b-9c2d-545277362b65 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21R-A12P-07 52a863fe-b210-456b-9c2d-545277362b65 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012949_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21R-A12P-07 52a863fe-b210-456b-9c2d-545277362b65 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012949_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21R-A12P-07 52a863fe-b210-456b-9c2d-545277362b65 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012949_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21R-A12P-07 52a863fe-b210-456b-9c2d-545277362b65 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_487236.TCGA-BH-A0C3-01A-21R-A12P-07.110706_UNC12-SN629_0107_BD0DKWABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21R-A12P-07 52a863fe-b210-456b-9c2d-545277362b65 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_487237.TCGA-BH-A0C3-01A-21R-A12P-07.110706_UNC12-SN629_0107_BD0DKWABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21R-A12P-07 52a863fe-b210-456b-9c2d-545277362b65 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_487252.TCGA-BH-A0C3-01A-21R-A12P-07.110706_UNC12-SN629_0107_BD0DKWABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-01A TCGA-BH-A0C3-01A-21W-A14O-09 c069b0fa-e30b-4d26-92ab-63e9e670da3b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23D-A12M-02 f0f6753c-220c-41da-b82b-4f18d0920547 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23D-A12N-01 fccfb1a9-bb7b-47fc-aee6-9512cea51b43 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23D-A12N-01 fccfb1a9-bb7b-47fc-aee6-9512cea51b43 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D01_747998.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23D-A12N-01 fccfb1a9-bb7b-47fc-aee6-9512cea51b43 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D01_747998.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23D-A12N-01 fccfb1a9-bb7b-47fc-aee6-9512cea51b43 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D01_747998.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23D-A12N-01 fccfb1a9-bb7b-47fc-aee6-9512cea51b43 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D01_747998.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23D-A12N-01 fccfb1a9-bb7b-47fc-aee6-9512cea51b43 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D01_747998.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23D-A12N-01 fccfb1a9-bb7b-47fc-aee6-9512cea51b43 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D01_747998.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23D-A12N-01 fccfb1a9-bb7b-47fc-aee6-9512cea51b43 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D01_747998.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23D-A12N-01 fccfb1a9-bb7b-47fc-aee6-9512cea51b43 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D01_747998.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23D-A12Q-09 128e802b-64d9-42d9-8a22-59c8ce061eb4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23D-A12Q-09 128e802b-64d9-42d9-8a22-59c8ce061eb4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23D-A12R-05 3669fca6-4284-488e-9c6c-4d96885fac9c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23D-A12R-05 3669fca6-4284-488e-9c6c-4d96885fac9c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324070_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23D-A12R-05 3669fca6-4284-488e-9c6c-4d96885fac9c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324070_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23D-A12R-05 3669fca6-4284-488e-9c6c-4d96885fac9c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-BH-A0C3-11A-23D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23D-A12R-05 3669fca6-4284-488e-9c6c-4d96885fac9c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-BH-A0C3-11A-23D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23R-A12O-13 fe8c1b0d-f7b8-4e58-a728-55d367798adf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23R-A12O-13 fe8c1b0d-f7b8-4e58-a728-55d367798adf miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0C3-11A-23R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23R-A12O-13 fe8c1b0d-f7b8-4e58-a728-55d367798adf miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0C3-11A-23R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23R-A12P-07 65923c68-2c86-4b4d-abe2-5320c08bb68f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23R-A12P-07 65923c68-2c86-4b4d-abe2-5320c08bb68f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012714_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23R-A12P-07 65923c68-2c86-4b4d-abe2-5320c08bb68f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012714_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23R-A12P-07 65923c68-2c86-4b4d-abe2-5320c08bb68f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012714_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23R-A12P-07 65923c68-2c86-4b4d-abe2-5320c08bb68f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408140.TCGA-BH-A0C3-11A-23R-A12P-07.110725_UNC11-SN627_0128_AB0AYGABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23R-A12P-07 65923c68-2c86-4b4d-abe2-5320c08bb68f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408142.TCGA-BH-A0C3-11A-23R-A12P-07.110725_UNC11-SN627_0128_AB0AYGABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23R-A12P-07 65923c68-2c86-4b4d-abe2-5320c08bb68f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408178.TCGA-BH-A0C3-11A-23R-A12P-07.110725_UNC11-SN627_0128_AB0AYGABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0C3 TCGA-BH-A0C3-11A TCGA-BH-A0C3-11A-23W-A14O-09 809ff824-d6a5-42cb-a28f-ddb019ecad1b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11D-A10X-02 4df60f52-2801-4a5a-9c1e-b09a8085e0c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11D-A10Y-09 ba3b30c5-8179-49bd-aacd-53326bf356f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11D-A10Y-09 ba3b30c5-8179-49bd-aacd-53326bf356f8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11D-A111-01 84f33e36-25f6-47a9-9fe9-85f8d4247ef2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11D-A111-01 84f33e36-25f6-47a9-9fe9-85f8d4247ef2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D09_735160.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11D-A111-01 84f33e36-25f6-47a9-9fe9-85f8d4247ef2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D09_735160.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11D-A111-01 84f33e36-25f6-47a9-9fe9-85f8d4247ef2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D09_735160.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11D-A111-01 84f33e36-25f6-47a9-9fe9-85f8d4247ef2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D09_735160.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11D-A111-01 84f33e36-25f6-47a9-9fe9-85f8d4247ef2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D09_735160.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11D-A111-01 84f33e36-25f6-47a9-9fe9-85f8d4247ef2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D09_735160.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11D-A111-01 84f33e36-25f6-47a9-9fe9-85f8d4247ef2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D09_735160.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11D-A111-01 84f33e36-25f6-47a9-9fe9-85f8d4247ef2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D09_735160.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11D-A112-05 e5ec20da-851c-4e99-b77f-75a5a8089d9f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11D-A112-05 e5ec20da-851c-4e99-b77f-75a5a8089d9f DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-BH-A0C7-01B-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11D-A112-05 e5ec20da-851c-4e99-b77f-75a5a8089d9f DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-BH-A0C7-01B-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11D-A112-05 e5ec20da-851c-4e99-b77f-75a5a8089d9f DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-BH-A0C7-01B-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11R-A114-13 11cdffe2-bdb4-4310-878f-8b0058250369 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11R-A114-13 11cdffe2-bdb4-4310-878f-8b0058250369 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0C7-01B-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11R-A114-13 11cdffe2-bdb4-4310-878f-8b0058250369 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0C7-01B-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11R-A115-07 e58a6cf4-a4ff-4179-9671-a5661f380a8d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11R-A115-07 e58a6cf4-a4ff-4179-9671-a5661f380a8d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012742_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11R-A115-07 e58a6cf4-a4ff-4179-9671-a5661f380a8d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012742_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11R-A115-07 e58a6cf4-a4ff-4179-9671-a5661f380a8d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012742_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11R-A115-07 e58a6cf4-a4ff-4179-9671-a5661f380a8d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_448940.TCGA-BH-A0C7-01B-11R-A115-07.110608_UNC13-SN749_0073_BD0CV8ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11R-A115-07 e58a6cf4-a4ff-4179-9671-a5661f380a8d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_449094.TCGA-BH-A0C7-01B-11R-A115-07.110608_UNC13-SN749_0073_BD0CV8ABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11R-A115-07 e58a6cf4-a4ff-4179-9671-a5661f380a8d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_449478.TCGA-BH-A0C7-01B-11R-A115-07.110608_UNC13-SN749_0073_BD0CV8ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-01B TCGA-BH-A0C7-01B-11W-A12T-09 797fc15a-52ef-4a0f-b931-29fa3ebe1a7f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-10A TCGA-BH-A0C7-10A-01D-A10Z-02 ebd914fc-e2db-4541-8f81-b5e33a417f27 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-10A TCGA-BH-A0C7-10A-01D-A110-09 c31039db-bf46-4da7-95de-7c89adfcee4a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-10A TCGA-BH-A0C7-10A-01D-A110-09 c31039db-bf46-4da7-95de-7c89adfcee4a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-10A TCGA-BH-A0C7-10A-01D-A113-01 7180574a-08c1-4142-9c6f-ad596c4ba7c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-10A TCGA-BH-A0C7-10A-01D-A113-01 7180574a-08c1-4142-9c6f-ad596c4ba7c4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A03_735080.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0C7 TCGA-BH-A0C7-10A TCGA-BH-A0C7-10A-01D-A113-01 7180574a-08c1-4142-9c6f-ad596c4ba7c4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A03_735080.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-10A TCGA-BH-A0C7-10A-01D-A113-01 7180574a-08c1-4142-9c6f-ad596c4ba7c4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A03_735080.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-10A TCGA-BH-A0C7-10A-01D-A113-01 7180574a-08c1-4142-9c6f-ad596c4ba7c4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A03_735080.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-10A TCGA-BH-A0C7-10A-01D-A113-01 7180574a-08c1-4142-9c6f-ad596c4ba7c4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A03_735080.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-10A TCGA-BH-A0C7-10A-01D-A113-01 7180574a-08c1-4142-9c6f-ad596c4ba7c4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A03_735080.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-10A TCGA-BH-A0C7-10A-01D-A113-01 7180574a-08c1-4142-9c6f-ad596c4ba7c4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A03_735080.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-10A TCGA-BH-A0C7-10A-01D-A113-01 7180574a-08c1-4142-9c6f-ad596c4ba7c4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A03_735080.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0C7 TCGA-BH-A0C7-10A TCGA-BH-A0C7-10A-01W-A12U-09 efcdb7af-1c34-427d-a1fc-d9c273cc699e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0C7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31D-A12M-02 febe9840-ca3c-4989-be59-df25cb53e892 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31D-A12N-01 72f2a477-f43f-4ffe-a233-e09a3b66da3b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31D-A12N-01 72f2a477-f43f-4ffe-a233-e09a3b66da3b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F04_747888.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31D-A12N-01 72f2a477-f43f-4ffe-a233-e09a3b66da3b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F04_747888.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31D-A12N-01 72f2a477-f43f-4ffe-a233-e09a3b66da3b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F04_747888.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31D-A12N-01 72f2a477-f43f-4ffe-a233-e09a3b66da3b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F04_747888.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31D-A12N-01 72f2a477-f43f-4ffe-a233-e09a3b66da3b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F04_747888.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31D-A12N-01 72f2a477-f43f-4ffe-a233-e09a3b66da3b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F04_747888.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31D-A12N-01 72f2a477-f43f-4ffe-a233-e09a3b66da3b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F04_747888.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31D-A12N-01 72f2a477-f43f-4ffe-a233-e09a3b66da3b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F04_747888.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31D-A12Q-09 1a59cd97-2ee8-4f82-b542-e2f35171bc01 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31D-A12Q-09 1a59cd97-2ee8-4f82-b542-e2f35171bc01 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31D-A12R-05 3e89ccf8-b351-4f97-b38d-fe2ac2414a9d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31D-A12R-05 3e89ccf8-b351-4f97-b38d-fe2ac2414a9d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324070_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31D-A12R-05 3e89ccf8-b351-4f97-b38d-fe2ac2414a9d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324070_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31D-A12R-05 3e89ccf8-b351-4f97-b38d-fe2ac2414a9d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-BH-A0DD-01A-31D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31D-A12R-05 3e89ccf8-b351-4f97-b38d-fe2ac2414a9d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-BH-A0DD-01A-31D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31R-A12O-13 3df46fec-cbf2-48b6-8ce1-564ea766eac3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31R-A12O-13 3df46fec-cbf2-48b6-8ce1-564ea766eac3 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DD-01A-31R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31R-A12O-13 3df46fec-cbf2-48b6-8ce1-564ea766eac3 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DD-01A-31R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31R-A12P-07 e15ff180-38d3-4614-88ee-3645afaab54b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31R-A12P-07 e15ff180-38d3-4614-88ee-3645afaab54b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012954_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31R-A12P-07 e15ff180-38d3-4614-88ee-3645afaab54b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012954_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31R-A12P-07 e15ff180-38d3-4614-88ee-3645afaab54b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012954_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31R-A12P-07 e15ff180-38d3-4614-88ee-3645afaab54b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_487260.TCGA-BH-A0DD-01A-31R-A12P-07.110706_UNC12-SN629_0107_BD0DKWABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31R-A12P-07 e15ff180-38d3-4614-88ee-3645afaab54b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_487262.TCGA-BH-A0DD-01A-31R-A12P-07.110706_UNC12-SN629_0107_BD0DKWABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31R-A12P-07 e15ff180-38d3-4614-88ee-3645afaab54b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_487279.TCGA-BH-A0DD-01A-31R-A12P-07.110706_UNC12-SN629_0107_BD0DKWABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-01A TCGA-BH-A0DD-01A-31W-A14O-09 b3526073-dd93-47b8-a61f-6657c0e1421c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-11A TCGA-BH-A0DD-11A-23D-A12M-02 48e5c07c-9774-4693-95ef-974e68d1dd06 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-11A TCGA-BH-A0DD-11A-23D-A12N-01 15fb9505-2ca4-4f4e-8adc-80d6f4990cfb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-11A TCGA-BH-A0DD-11A-23D-A12N-01 15fb9505-2ca4-4f4e-8adc-80d6f4990cfb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F06_747880.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0DD TCGA-BH-A0DD-11A TCGA-BH-A0DD-11A-23D-A12N-01 15fb9505-2ca4-4f4e-8adc-80d6f4990cfb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F06_747880.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-11A TCGA-BH-A0DD-11A-23D-A12N-01 15fb9505-2ca4-4f4e-8adc-80d6f4990cfb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F06_747880.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-11A TCGA-BH-A0DD-11A-23D-A12N-01 15fb9505-2ca4-4f4e-8adc-80d6f4990cfb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F06_747880.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-11A TCGA-BH-A0DD-11A-23D-A12N-01 15fb9505-2ca4-4f4e-8adc-80d6f4990cfb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F06_747880.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-11A TCGA-BH-A0DD-11A-23D-A12N-01 15fb9505-2ca4-4f4e-8adc-80d6f4990cfb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F06_747880.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-11A TCGA-BH-A0DD-11A-23D-A12N-01 15fb9505-2ca4-4f4e-8adc-80d6f4990cfb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F06_747880.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-11A TCGA-BH-A0DD-11A-23D-A12N-01 15fb9505-2ca4-4f4e-8adc-80d6f4990cfb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F06_747880.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-11A TCGA-BH-A0DD-11A-23D-A12Q-09 a2afc239-b11b-4105-a2da-b183e9e78247 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-11A TCGA-BH-A0DD-11A-23D-A12Q-09 a2afc239-b11b-4105-a2da-b183e9e78247 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-11A TCGA-BH-A0DD-11A-23R-A12O-13 38f963a4-f4b9-41f5-ae1c-beab26023f21 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-11A TCGA-BH-A0DD-11A-23R-A12O-13 38f963a4-f4b9-41f5-ae1c-beab26023f21 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DD-11A-23R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-11A TCGA-BH-A0DD-11A-23R-A12O-13 38f963a4-f4b9-41f5-ae1c-beab26023f21 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DD-11A-23R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-11A TCGA-BH-A0DD-11A-23R-A12P-07 c38c7c6d-7c7c-45ea-9fae-a889e6ce0df5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-11A TCGA-BH-A0DD-11A-23R-A12P-07 c38c7c6d-7c7c-45ea-9fae-a889e6ce0df5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013053_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-11A TCGA-BH-A0DD-11A-23R-A12P-07 c38c7c6d-7c7c-45ea-9fae-a889e6ce0df5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013053_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-11A TCGA-BH-A0DD-11A-23R-A12P-07 c38c7c6d-7c7c-45ea-9fae-a889e6ce0df5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013053_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-11A TCGA-BH-A0DD-11A-23R-A12P-07 c38c7c6d-7c7c-45ea-9fae-a889e6ce0df5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408152.TCGA-BH-A0DD-11A-23R-A12P-07.110725_UNC11-SN627_0128_AB0AYGABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-11A TCGA-BH-A0DD-11A-23R-A12P-07 c38c7c6d-7c7c-45ea-9fae-a889e6ce0df5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408182.TCGA-BH-A0DD-11A-23R-A12P-07.110725_UNC11-SN627_0128_AB0AYGABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-11A TCGA-BH-A0DD-11A-23R-A12P-07 c38c7c6d-7c7c-45ea-9fae-a889e6ce0df5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408198.TCGA-BH-A0DD-11A-23R-A12P-07.110725_UNC11-SN627_0128_AB0AYGABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DD TCGA-BH-A0DD-11A TCGA-BH-A0DD-11A-23W-A14O-09 be2c15a8-3806-4931-b810-1cd9e42c917c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11D-A10X-02 1db58673-fce8-4d4a-9938-0d541bc56872 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11D-A10Y-09 bddc0994-a57b-4fd0-9b62-bf7f9f4ba403 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11D-A10Y-09 bddc0994-a57b-4fd0-9b62-bf7f9f4ba403 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11D-A111-01 358c7629-e5dc-4191-aece-4a0e0eb0d5da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11D-A111-01 358c7629-e5dc-4191-aece-4a0e0eb0d5da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H08_735132.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11D-A111-01 358c7629-e5dc-4191-aece-4a0e0eb0d5da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H08_735132.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11D-A111-01 358c7629-e5dc-4191-aece-4a0e0eb0d5da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H08_735132.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11D-A111-01 358c7629-e5dc-4191-aece-4a0e0eb0d5da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H08_735132.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11D-A111-01 358c7629-e5dc-4191-aece-4a0e0eb0d5da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H08_735132.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11D-A111-01 358c7629-e5dc-4191-aece-4a0e0eb0d5da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H08_735132.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11D-A111-01 358c7629-e5dc-4191-aece-4a0e0eb0d5da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H08_735132.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11D-A111-01 358c7629-e5dc-4191-aece-4a0e0eb0d5da SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H08_735132.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11D-A112-05 c4b91d63-1d50-46e4-8256-ea96bc3146ae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11D-A112-05 c4b91d63-1d50-46e4-8256-ea96bc3146ae DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-BH-A0DE-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11D-A112-05 c4b91d63-1d50-46e4-8256-ea96bc3146ae DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-BH-A0DE-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11D-A112-05 c4b91d63-1d50-46e4-8256-ea96bc3146ae DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-BH-A0DE-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11R-A114-13 ef4eecf9-d908-4a14-9232-fee613508991 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11R-A114-13 ef4eecf9-d908-4a14-9232-fee613508991 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DE-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11R-A114-13 ef4eecf9-d908-4a14-9232-fee613508991 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DE-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11R-A115-07 b9a1f505-713e-4044-b76e-57134a4802f1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11R-A115-07 b9a1f505-713e-4044-b76e-57134a4802f1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012831_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11R-A115-07 b9a1f505-713e-4044-b76e-57134a4802f1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012831_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11R-A115-07 b9a1f505-713e-4044-b76e-57134a4802f1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012831_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11R-A115-07 b9a1f505-713e-4044-b76e-57134a4802f1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421447.TCGA-BH-A0DE-01A-11R-A115-07.110527_UNC10-SN254_0224_AD0CPKABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11R-A115-07 b9a1f505-713e-4044-b76e-57134a4802f1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421454.TCGA-BH-A0DE-01A-11R-A115-07.110527_UNC10-SN254_0224_AD0CPKABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11R-A115-07 b9a1f505-713e-4044-b76e-57134a4802f1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421488.TCGA-BH-A0DE-01A-11R-A115-07.110527_UNC10-SN254_0224_AD0CPKABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-01A TCGA-BH-A0DE-01A-11W-A12T-09 bcec38b4-bc31-4a0d-920e-c56aa50292e5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-10A TCGA-BH-A0DE-10A-02D-A10Z-02 8bdc2a11-333a-4fa3-b8f0-7edf512f4967 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-10A TCGA-BH-A0DE-10A-02D-A110-09 4128dbf9-bf2a-4ff9-9b71-195541e453ac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-10A TCGA-BH-A0DE-10A-02D-A110-09 4128dbf9-bf2a-4ff9-9b71-195541e453ac Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-10A TCGA-BH-A0DE-10A-02D-A113-01 6922cdf3-aac4-4c44-bb39-d6ba957b0954 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-10A TCGA-BH-A0DE-10A-02D-A113-01 6922cdf3-aac4-4c44-bb39-d6ba957b0954 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A12_735146.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0DE TCGA-BH-A0DE-10A TCGA-BH-A0DE-10A-02D-A113-01 6922cdf3-aac4-4c44-bb39-d6ba957b0954 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A12_735146.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-10A TCGA-BH-A0DE-10A-02D-A113-01 6922cdf3-aac4-4c44-bb39-d6ba957b0954 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A12_735146.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-10A TCGA-BH-A0DE-10A-02D-A113-01 6922cdf3-aac4-4c44-bb39-d6ba957b0954 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A12_735146.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-10A TCGA-BH-A0DE-10A-02D-A113-01 6922cdf3-aac4-4c44-bb39-d6ba957b0954 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A12_735146.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-10A TCGA-BH-A0DE-10A-02D-A113-01 6922cdf3-aac4-4c44-bb39-d6ba957b0954 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A12_735146.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-10A TCGA-BH-A0DE-10A-02D-A113-01 6922cdf3-aac4-4c44-bb39-d6ba957b0954 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A12_735146.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-10A TCGA-BH-A0DE-10A-02D-A113-01 6922cdf3-aac4-4c44-bb39-d6ba957b0954 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_A12_735146.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-10A TCGA-BH-A0DE-10A-02W-A12U-09 15172210-f95e-4b3f-b056-82b479515e89 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-11A TCGA-BH-A0DE-11A-23D-A10X-02 0c624f2c-1d94-49a6-8174-8fe41575060a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-11A TCGA-BH-A0DE-11A-23D-A10Y-09 ef386867-86e0-4f34-9dd4-1e008bf0d26b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-11A TCGA-BH-A0DE-11A-23D-A10Y-09 ef386867-86e0-4f34-9dd4-1e008bf0d26b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-11A TCGA-BH-A0DE-11A-23D-A111-01 3d251807-80f4-44bf-b1ba-929b61676655 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-11A TCGA-BH-A0DE-11A-23D-A111-01 3d251807-80f4-44bf-b1ba-929b61676655 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D07_735016.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0DE TCGA-BH-A0DE-11A TCGA-BH-A0DE-11A-23D-A111-01 3d251807-80f4-44bf-b1ba-929b61676655 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D07_735016.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-11A TCGA-BH-A0DE-11A-23D-A111-01 3d251807-80f4-44bf-b1ba-929b61676655 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D07_735016.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-11A TCGA-BH-A0DE-11A-23D-A111-01 3d251807-80f4-44bf-b1ba-929b61676655 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D07_735016.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-11A TCGA-BH-A0DE-11A-23D-A111-01 3d251807-80f4-44bf-b1ba-929b61676655 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D07_735016.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-11A TCGA-BH-A0DE-11A-23D-A111-01 3d251807-80f4-44bf-b1ba-929b61676655 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D07_735016.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-11A TCGA-BH-A0DE-11A-23D-A111-01 3d251807-80f4-44bf-b1ba-929b61676655 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D07_735016.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-11A TCGA-BH-A0DE-11A-23D-A111-01 3d251807-80f4-44bf-b1ba-929b61676655 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D07_735016.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-11A TCGA-BH-A0DE-11A-23D-A112-05 606c6a1b-4f4b-455c-a20f-5e69949c5c99 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-11A TCGA-BH-A0DE-11A-23D-A112-05 606c6a1b-4f4b-455c-a20f-5e69949c5c99 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-BH-A0DE-11A-23D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-11A TCGA-BH-A0DE-11A-23D-A112-05 606c6a1b-4f4b-455c-a20f-5e69949c5c99 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-BH-A0DE-11A-23D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-11A TCGA-BH-A0DE-11A-23D-A112-05 606c6a1b-4f4b-455c-a20f-5e69949c5c99 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-BH-A0DE-11A-23D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-BH-A0DE TCGA-BH-A0DE-11A TCGA-BH-A0DE-11A-23W-A12T-09 f3dabb84-15e1-4382-8fc0-489335c858b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21D-A12M-02 74c673e4-4a6d-4c27-9784-66df37eb60bc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21D-A12N-01 715f5846-1e11-4c15-ac61-927baf0b92d4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21D-A12N-01 715f5846-1e11-4c15-ac61-927baf0b92d4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D06_747908.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21D-A12N-01 715f5846-1e11-4c15-ac61-927baf0b92d4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D06_747908.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21D-A12N-01 715f5846-1e11-4c15-ac61-927baf0b92d4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D06_747908.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21D-A12N-01 715f5846-1e11-4c15-ac61-927baf0b92d4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D06_747908.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21D-A12N-01 715f5846-1e11-4c15-ac61-927baf0b92d4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D06_747908.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21D-A12N-01 715f5846-1e11-4c15-ac61-927baf0b92d4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D06_747908.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21D-A12N-01 715f5846-1e11-4c15-ac61-927baf0b92d4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D06_747908.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21D-A12N-01 715f5846-1e11-4c15-ac61-927baf0b92d4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D06_747908.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21D-A12Q-09 ec4d4cbc-d5d1-418d-a292-cad9576624fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21D-A12Q-09 ec4d4cbc-d5d1-418d-a292-cad9576624fd Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21D-A12R-05 71b6f6be-1274-4792-82e8-3b56b7da9dcf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21D-A12R-05 71b6f6be-1274-4792-82e8-3b56b7da9dcf DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324035_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21D-A12R-05 71b6f6be-1274-4792-82e8-3b56b7da9dcf DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324035_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21D-A12R-05 71b6f6be-1274-4792-82e8-3b56b7da9dcf DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-BH-A0DG-01A-21D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21D-A12R-05 71b6f6be-1274-4792-82e8-3b56b7da9dcf DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-BH-A0DG-01A-21D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21R-A12O-13 04f6ed80-baad-4e7f-ae2f-d7e56be27001 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21R-A12O-13 04f6ed80-baad-4e7f-ae2f-d7e56be27001 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DG-01A-21R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21R-A12O-13 04f6ed80-baad-4e7f-ae2f-d7e56be27001 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DG-01A-21R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21R-A12P-07 a6b72c40-c921-4159-abad-b64e20619241 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21R-A12P-07 a6b72c40-c921-4159-abad-b64e20619241 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012962_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21R-A12P-07 a6b72c40-c921-4159-abad-b64e20619241 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012962_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21R-A12P-07 a6b72c40-c921-4159-abad-b64e20619241 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012962_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21R-A12P-07 a6b72c40-c921-4159-abad-b64e20619241 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408139.TCGA-BH-A0DG-01A-21R-A12P-07.110725_UNC11-SN627_0128_AB0AYGABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21R-A12P-07 a6b72c40-c921-4159-abad-b64e20619241 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408167.TCGA-BH-A0DG-01A-21R-A12P-07.110725_UNC11-SN627_0128_AB0AYGABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21R-A12P-07 a6b72c40-c921-4159-abad-b64e20619241 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408172.TCGA-BH-A0DG-01A-21R-A12P-07.110725_UNC11-SN627_0128_AB0AYGABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-01A TCGA-BH-A0DG-01A-21W-A14O-09 826d9e82-c777-46f6-b93b-1531a93bd92f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-11A TCGA-BH-A0DG-11A-43D-A12M-02 847fd31d-3817-4e66-a4e9-1dd7220c4205 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-11A TCGA-BH-A0DG-11A-43D-A12N-01 6111d82b-833c-47c3-a680-92d09e3422c0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-11A TCGA-BH-A0DG-11A-43D-A12N-01 6111d82b-833c-47c3-a680-92d09e3422c0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B04_748050.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0DG TCGA-BH-A0DG-11A TCGA-BH-A0DG-11A-43D-A12N-01 6111d82b-833c-47c3-a680-92d09e3422c0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B04_748050.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-11A TCGA-BH-A0DG-11A-43D-A12N-01 6111d82b-833c-47c3-a680-92d09e3422c0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B04_748050.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-11A TCGA-BH-A0DG-11A-43D-A12N-01 6111d82b-833c-47c3-a680-92d09e3422c0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B04_748050.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-11A TCGA-BH-A0DG-11A-43D-A12N-01 6111d82b-833c-47c3-a680-92d09e3422c0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B04_748050.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-11A TCGA-BH-A0DG-11A-43D-A12N-01 6111d82b-833c-47c3-a680-92d09e3422c0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B04_748050.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-11A TCGA-BH-A0DG-11A-43D-A12N-01 6111d82b-833c-47c3-a680-92d09e3422c0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B04_748050.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-11A TCGA-BH-A0DG-11A-43D-A12N-01 6111d82b-833c-47c3-a680-92d09e3422c0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B04_748050.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-11A TCGA-BH-A0DG-11A-43D-A12Q-09 d0d81468-73f6-4a8a-8f00-b99bd127c228 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-11A TCGA-BH-A0DG-11A-43D-A12Q-09 d0d81468-73f6-4a8a-8f00-b99bd127c228 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-11A TCGA-BH-A0DG-11A-43D-A12R-05 879d5efb-e3ba-4e33-81dc-e3ac11e30b95 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-11A TCGA-BH-A0DG-11A-43D-A12R-05 879d5efb-e3ba-4e33-81dc-e3ac11e30b95 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324072_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-11A TCGA-BH-A0DG-11A-43D-A12R-05 879d5efb-e3ba-4e33-81dc-e3ac11e30b95 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324072_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-11A TCGA-BH-A0DG-11A-43D-A12R-05 879d5efb-e3ba-4e33-81dc-e3ac11e30b95 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-BH-A0DG-11A-43D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-11A TCGA-BH-A0DG-11A-43D-A12R-05 879d5efb-e3ba-4e33-81dc-e3ac11e30b95 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-BH-A0DG-11A-43D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-11A TCGA-BH-A0DG-11A-43R-A12O-13 aaf4b7a3-9d8e-4a9d-8ec4-c1d332745c72 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-11A TCGA-BH-A0DG-11A-43R-A12O-13 aaf4b7a3-9d8e-4a9d-8ec4-c1d332745c72 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DG-11A-43R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-11A TCGA-BH-A0DG-11A-43R-A12O-13 aaf4b7a3-9d8e-4a9d-8ec4-c1d332745c72 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_435768.TCGA-BH-A0DG-11A-43R-A12P-07.110801_UNC10-SN254_0250_AC01YCABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-11A TCGA-BH-A0DG-11A-43R-A12P-07 61c8278b-4c06-4563-b1ac-97cceec76ca4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_435786.TCGA-BH-A0DG-11A-43R-A12P-07.110801_UNC10-SN254_0250_AC01YCABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-11A TCGA-BH-A0DG-11A-43R-A12P-07 61c8278b-4c06-4563-b1ac-97cceec76ca4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_435832.TCGA-BH-A0DG-11A-43R-A12P-07.110801_UNC10-SN254_0250_AC01YCABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DG TCGA-BH-A0DG-11A TCGA-BH-A0DG-11A-43W-A14O-09 73994617-2470-4ea2-889b-d872469ce97f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11D-A086-02 6e363872-14d9-4cbc-9c52-1da3f35f1eb8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11D-A087-01 3d2d8785-65ba-4b5e-a5b8-8ceed713b8f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11D-A087-01 3d2d8785-65ba-4b5e-a5b8-8ceed713b8f6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D05_698112.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11D-A087-01 3d2d8785-65ba-4b5e-a5b8-8ceed713b8f6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D05_698112.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11D-A087-01 3d2d8785-65ba-4b5e-a5b8-8ceed713b8f6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D05_698112.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11D-A087-01 3d2d8785-65ba-4b5e-a5b8-8ceed713b8f6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D05_698112.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11D-A087-01 3d2d8785-65ba-4b5e-a5b8-8ceed713b8f6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D05_698112.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11D-A087-01 3d2d8785-65ba-4b5e-a5b8-8ceed713b8f6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D05_698112.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11D-A087-01 3d2d8785-65ba-4b5e-a5b8-8ceed713b8f6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D05_698112.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11D-A087-01 3d2d8785-65ba-4b5e-a5b8-8ceed713b8f6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D05_698112.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11D-A088-05 f96b0860-5578-496a-9e62-c12fada2f840 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11D-A099-09 7aa19e23-48fe-4ce9-89f8-dd7513e4cb62 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11D-A099-09 7aa19e23-48fe-4ce9-89f8-dd7513e4cb62 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11D-A099-09 7aa19e23-48fe-4ce9-89f8-dd7513e4cb62 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11D-A10P-05 c8d99365-e623-46d8-a45d-02f54a6b2079 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11D-A10P-05 c8d99365-e623-46d8-a45d-02f54a6b2079 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791010_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11D-A10P-05 c8d99365-e623-46d8-a45d-02f54a6b2079 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791010_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11D-A10P-05 c8d99365-e623-46d8-a45d-02f54a6b2079 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-BH-A0DH-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11D-A10P-05 c8d99365-e623-46d8-a45d-02f54a6b2079 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-BH-A0DH-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11R-A084-07 c643222a-e138-4b3c-a96d-02be24ccb0d0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11R-A084-07 c643222a-e138-4b3c-a96d-02be24ccb0d0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012569_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11R-A084-07 c643222a-e138-4b3c-a96d-02be24ccb0d0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012569_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11R-A084-07 c643222a-e138-4b3c-a96d-02be24ccb0d0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012569_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11R-A084-07 c643222a-e138-4b3c-a96d-02be24ccb0d0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443770.TCGA-BH-A0DH-01A-11R-A084-07.110315_UNC9-SN296_0160_BB05L8ABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11R-A084-07 c643222a-e138-4b3c-a96d-02be24ccb0d0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_444106.TCGA-BH-A0DH-01A-11R-A084-07.110315_UNC9-SN296_0160_BB05L8ABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11R-A084-07 c643222a-e138-4b3c-a96d-02be24ccb0d0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_444229.TCGA-BH-A0DH-01A-11R-A084-07.110315_UNC9-SN296_0160_BB05L8ABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11R-A085-13 5436b897-f4ce-4b35-9831-f002bdcc3e6c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11R-A085-13 5436b897-f4ce-4b35-9831-f002bdcc3e6c miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0DH-01A-11R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11R-A085-13 5436b897-f4ce-4b35-9831-f002bdcc3e6c miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0DH-01A-11R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11W-A097-09 f7d7ac7d-67c5-4724-b3db-d84f1ceca1e5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-01A TCGA-BH-A0DH-01A-11X-A098-09 c4cc4d16-1cba-42be-b5cb-a11852fc1214 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-10A TCGA-BH-A0DH-10A-01D-A086-02 e53a4a18-d2de-4304-beb5-5a8c93e011b6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-10A TCGA-BH-A0DH-10A-01D-A087-01 27e4e760-df08-4c89-9cc3-0c2c0790a283 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-10A TCGA-BH-A0DH-10A-01D-A087-01 27e4e760-df08-4c89-9cc3-0c2c0790a283 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A04_698118.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-BH-A0DH TCGA-BH-A0DH-10A TCGA-BH-A0DH-10A-01D-A087-01 27e4e760-df08-4c89-9cc3-0c2c0790a283 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A04_698118.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-10A TCGA-BH-A0DH-10A-01D-A087-01 27e4e760-df08-4c89-9cc3-0c2c0790a283 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A04_698118.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-10A TCGA-BH-A0DH-10A-01D-A087-01 27e4e760-df08-4c89-9cc3-0c2c0790a283 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A04_698118.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-10A TCGA-BH-A0DH-10A-01D-A087-01 27e4e760-df08-4c89-9cc3-0c2c0790a283 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A04_698118.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-10A TCGA-BH-A0DH-10A-01D-A087-01 27e4e760-df08-4c89-9cc3-0c2c0790a283 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A04_698118.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-10A TCGA-BH-A0DH-10A-01D-A087-01 27e4e760-df08-4c89-9cc3-0c2c0790a283 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A04_698118.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-10A TCGA-BH-A0DH-10A-01D-A087-01 27e4e760-df08-4c89-9cc3-0c2c0790a283 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A04_698118.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-10A TCGA-BH-A0DH-10A-01D-A099-09 2bb52edf-252d-480f-ad2b-afc9c890fdfe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-10A TCGA-BH-A0DH-10A-01D-A099-09 2bb52edf-252d-480f-ad2b-afc9c890fdfe Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-10A TCGA-BH-A0DH-10A-01D-A099-09 2bb52edf-252d-480f-ad2b-afc9c890fdfe Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-10A TCGA-BH-A0DH-10A-01W-A097-09 2b71dc07-de0b-4d29-a56b-36085b180f99 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-10A TCGA-BH-A0DH-10A-01X-A098-09 47e6b0ec-7ffe-45b3-9ebe-edcc1badb9d4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31D-A092-01 055adf3e-ce04-48e0-84a1-03ae500d24e9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31D-A092-01 055adf3e-ce04-48e0-84a1-03ae500d24e9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F08_729632.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31D-A092-01 055adf3e-ce04-48e0-84a1-03ae500d24e9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F08_729632.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31D-A092-01 055adf3e-ce04-48e0-84a1-03ae500d24e9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F08_729632.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31D-A092-01 055adf3e-ce04-48e0-84a1-03ae500d24e9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F08_729632.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31D-A092-01 055adf3e-ce04-48e0-84a1-03ae500d24e9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F08_729632.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31D-A092-01 055adf3e-ce04-48e0-84a1-03ae500d24e9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F08_729632.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31D-A092-01 055adf3e-ce04-48e0-84a1-03ae500d24e9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F08_729632.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31D-A092-01 055adf3e-ce04-48e0-84a1-03ae500d24e9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F08_729632.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31D-A093-05 ce661da0-4af9-41bd-bd56-da42bede7b80 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31D-A10E-09 f6c39a94-160d-4231-b12f-33c28ebbacf9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31D-A10E-09 f6c39a94-160d-4231-b12f-33c28ebbacf9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31D-A10E-09 f6c39a94-160d-4231-b12f-33c28ebbacf9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31D-A10Q-05 210142ef-0c3f-40c1-8cb5-cab8a87d6454 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31D-A10Q-05 210142ef-0c3f-40c1-8cb5-cab8a87d6454 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6005486013_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31D-A10Q-05 210142ef-0c3f-40c1-8cb5-cab8a87d6454 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6005486013_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31D-A10Q-05 210142ef-0c3f-40c1-8cb5-cab8a87d6454 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-BH-A0DH-11A-31D-A10Q-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31D-A10Q-05 210142ef-0c3f-40c1-8cb5-cab8a87d6454 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-BH-A0DH-11A-31D-A10Q-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31R-A089-07 4a8c96d9-b08d-4812-93ec-c8c9db8139aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31R-A089-07 4a8c96d9-b08d-4812-93ec-c8c9db8139aa Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012672_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31R-A089-07 4a8c96d9-b08d-4812-93ec-c8c9db8139aa Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012672_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31R-A089-07 4a8c96d9-b08d-4812-93ec-c8c9db8139aa Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012672_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31R-A089-07 4a8c96d9-b08d-4812-93ec-c8c9db8139aa RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_492702.TCGA-BH-A0DH-11A-31R-A089-07.110912_UNC13-SN749_0111_AD0DEAABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31R-A089-07 4a8c96d9-b08d-4812-93ec-c8c9db8139aa RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_492704.TCGA-BH-A0DH-11A-31R-A089-07.110912_UNC13-SN749_0111_AD0DEAABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31R-A089-07 4a8c96d9-b08d-4812-93ec-c8c9db8139aa RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_492737.TCGA-BH-A0DH-11A-31R-A089-07.110912_UNC13-SN749_0111_AD0DEAABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31W-A10F-09 46f8b8a3-ac92-41be-9e12-f4a16488fd66 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DH TCGA-BH-A0DH-11A TCGA-BH-A0DH-11A-31X-A10F-09 5b7f75e3-9c77-4bdb-b43e-e0a8ad0c8100 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21D-A12M-02 26fd6838-bad5-4c22-9813-46ce80ccee0b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21D-A12N-01 dd174335-cc95-4d3d-a25b-9abaaaa432a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21D-A12N-01 dd174335-cc95-4d3d-a25b-9abaaaa432a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D09_748024.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21D-A12N-01 dd174335-cc95-4d3d-a25b-9abaaaa432a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D09_748024.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21D-A12N-01 dd174335-cc95-4d3d-a25b-9abaaaa432a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D09_748024.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21D-A12N-01 dd174335-cc95-4d3d-a25b-9abaaaa432a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D09_748024.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21D-A12N-01 dd174335-cc95-4d3d-a25b-9abaaaa432a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D09_748024.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21D-A12N-01 dd174335-cc95-4d3d-a25b-9abaaaa432a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D09_748024.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21D-A12N-01 dd174335-cc95-4d3d-a25b-9abaaaa432a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D09_748024.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21D-A12N-01 dd174335-cc95-4d3d-a25b-9abaaaa432a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D09_748024.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21D-A12Q-09 3777748c-5614-4826-8cde-eb7ecefb8101 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21D-A12Q-09 3777748c-5614-4826-8cde-eb7ecefb8101 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21D-A12R-05 f1ced675-0a5a-4409-adde-ddab13d7f071 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21D-A12R-05 f1ced675-0a5a-4409-adde-ddab13d7f071 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324037_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21D-A12R-05 f1ced675-0a5a-4409-adde-ddab13d7f071 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324037_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21D-A12R-05 f1ced675-0a5a-4409-adde-ddab13d7f071 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-BH-A0DI-01A-21D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21D-A12R-05 f1ced675-0a5a-4409-adde-ddab13d7f071 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-BH-A0DI-01A-21D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21R-A12O-13 1ef2f0dc-1080-427c-a36f-d8de0f18214c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21R-A12O-13 1ef2f0dc-1080-427c-a36f-d8de0f18214c miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DI-01A-21R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21R-A12O-13 1ef2f0dc-1080-427c-a36f-d8de0f18214c miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DI-01A-21R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21R-A12P-07 91285ac6-c627-4101-b551-28f37b947276 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21R-A12P-07 91285ac6-c627-4101-b551-28f37b947276 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013050_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21R-A12P-07 91285ac6-c627-4101-b551-28f37b947276 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013050_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21R-A12P-07 91285ac6-c627-4101-b551-28f37b947276 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013050_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21R-A12P-07 91285ac6-c627-4101-b551-28f37b947276 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437214.TCGA-BH-A0DI-01A-21R-A12P-07.110725_UNC11-SN627_0128_AB0AYGABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21R-A12P-07 91285ac6-c627-4101-b551-28f37b947276 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437241.TCGA-BH-A0DI-01A-21R-A12P-07.110725_UNC11-SN627_0128_AB0AYGABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21R-A12P-07 91285ac6-c627-4101-b551-28f37b947276 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437511.TCGA-BH-A0DI-01A-21R-A12P-07.110725_UNC11-SN627_0128_AB0AYGABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-01A TCGA-BH-A0DI-01A-21W-A14O-09 1a472e57-2874-4c77-864c-2930b2ce4449 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-11A TCGA-BH-A0DI-11A-32D-A12M-02 68ea5a61-c51c-413b-8afc-9093d83c45e5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-11A TCGA-BH-A0DI-11A-32D-A12N-01 6f7db6b8-1614-41c9-a243-8e3db05133f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-11A TCGA-BH-A0DI-11A-32D-A12N-01 6f7db6b8-1614-41c9-a243-8e3db05133f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D10_747876.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0DI TCGA-BH-A0DI-11A TCGA-BH-A0DI-11A-32D-A12N-01 6f7db6b8-1614-41c9-a243-8e3db05133f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D10_747876.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-11A TCGA-BH-A0DI-11A-32D-A12N-01 6f7db6b8-1614-41c9-a243-8e3db05133f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D10_747876.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-11A TCGA-BH-A0DI-11A-32D-A12N-01 6f7db6b8-1614-41c9-a243-8e3db05133f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D10_747876.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-11A TCGA-BH-A0DI-11A-32D-A12N-01 6f7db6b8-1614-41c9-a243-8e3db05133f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D10_747876.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-11A TCGA-BH-A0DI-11A-32D-A12N-01 6f7db6b8-1614-41c9-a243-8e3db05133f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D10_747876.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-11A TCGA-BH-A0DI-11A-32D-A12N-01 6f7db6b8-1614-41c9-a243-8e3db05133f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D10_747876.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-11A TCGA-BH-A0DI-11A-32D-A12N-01 6f7db6b8-1614-41c9-a243-8e3db05133f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D10_747876.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-11A TCGA-BH-A0DI-11A-32D-A12Q-09 505bcff2-103a-4183-80cd-203ae6a5a31c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-11A TCGA-BH-A0DI-11A-32D-A12Q-09 505bcff2-103a-4183-80cd-203ae6a5a31c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-11A TCGA-BH-A0DI-11A-32D-A12R-05 0e9e676d-273f-4009-888d-7cfa11694f26 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-11A TCGA-BH-A0DI-11A-32D-A12R-05 0e9e676d-273f-4009-888d-7cfa11694f26 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324030_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-11A TCGA-BH-A0DI-11A-32D-A12R-05 0e9e676d-273f-4009-888d-7cfa11694f26 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324030_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-11A TCGA-BH-A0DI-11A-32D-A12R-05 0e9e676d-273f-4009-888d-7cfa11694f26 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-BH-A0DI-11A-32D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-11A TCGA-BH-A0DI-11A-32D-A12R-05 0e9e676d-273f-4009-888d-7cfa11694f26 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-BH-A0DI-11A-32D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-BH-A0DI TCGA-BH-A0DI-11A TCGA-BH-A0DI-11A-32W-A14O-09 0af712b2-f850-4827-a1bc-3a2fbe93d9b3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-01A TCGA-BH-A0DK-01A-21D-A058-05 3b4934cd-0fc5-4ba2-b17d-8ce15ae3944e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-01A TCGA-BH-A0DK-01A-21D-A059-01 b18d3669-3d80-4c66-b979-0d7e8541b509 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-01A TCGA-BH-A0DK-01A-21D-A059-01 b18d3669-3d80-4c66-b979-0d7e8541b509 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G06_697140.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0DK TCGA-BH-A0DK-01A TCGA-BH-A0DK-01A-21D-A059-01 b18d3669-3d80-4c66-b979-0d7e8541b509 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G06_697140.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-01A TCGA-BH-A0DK-01A-21D-A059-01 b18d3669-3d80-4c66-b979-0d7e8541b509 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G06_697140.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-01A TCGA-BH-A0DK-01A-21D-A059-01 b18d3669-3d80-4c66-b979-0d7e8541b509 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G06_697140.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-01A TCGA-BH-A0DK-01A-21D-A059-01 b18d3669-3d80-4c66-b979-0d7e8541b509 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G06_697140.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-01A TCGA-BH-A0DK-01A-21D-A059-01 b18d3669-3d80-4c66-b979-0d7e8541b509 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G06_697140.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-01A TCGA-BH-A0DK-01A-21D-A060-02 92245807-8b1b-4e96-8567-6cfe5e70ade4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-01A TCGA-BH-A0DK-01A-21D-A074-08 95b6ffae-d2d8-4cdd-b19f-de80b3d70918 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-01A TCGA-BH-A0DK-01A-21D-A075-09 ebbca6a3-cd11-426f-abb2-ca106703ee1b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-01A TCGA-BH-A0DK-01A-21D-A10P-05 c66da95f-cd03-4771-b86d-3f2fdf457fc4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-01A TCGA-BH-A0DK-01A-21D-A10P-05 c66da95f-cd03-4771-b86d-3f2fdf457fc4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486019_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-01A TCGA-BH-A0DK-01A-21D-A10P-05 c66da95f-cd03-4771-b86d-3f2fdf457fc4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486019_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-01A TCGA-BH-A0DK-01A-21D-A10P-05 c66da95f-cd03-4771-b86d-3f2fdf457fc4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0DK-01A-21D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-01A TCGA-BH-A0DK-01A-21D-A10P-05 c66da95f-cd03-4771-b86d-3f2fdf457fc4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0DK-01A-21D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-01A TCGA-BH-A0DK-01A-21R-A056-07 fef221ff-634b-4188-92cf-5723b9a3c04d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-01A TCGA-BH-A0DK-01A-21R-A056-07 fef221ff-634b-4188-92cf-5723b9a3c04d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012514_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-01A TCGA-BH-A0DK-01A-21R-A056-07 fef221ff-634b-4188-92cf-5723b9a3c04d Expression-Genes AgilentG4502A_07_3 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-01A TCGA-BH-A0DK-01A-21W-A071-09 24973c7f-21be-48c6-9a24-636cbf7e39dd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-01A TCGA-BH-A0DK-01A-21W-A071-09 24973c7f-21be-48c6-9a24-636cbf7e39dd Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-01A TCGA-BH-A0DK-01A-21X-A072-08 adaa6d92-ffab-48d8-b769-b283714f6428 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-01A TCGA-BH-A0DK-01A-21X-A073-09 0321c2ab-8953-4419-8108-d0ea82d1e1e5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-10A TCGA-BH-A0DK-10A-01D-A059-01 3eb562ea-e41a-4b24-9eaa-38d3996cd4e3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-10A TCGA-BH-A0DK-10A-01D-A059-01 3eb562ea-e41a-4b24-9eaa-38d3996cd4e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F01_697046.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0DK TCGA-BH-A0DK-10A TCGA-BH-A0DK-10A-01D-A059-01 3eb562ea-e41a-4b24-9eaa-38d3996cd4e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F01_697046.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-10A TCGA-BH-A0DK-10A-01D-A059-01 3eb562ea-e41a-4b24-9eaa-38d3996cd4e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F01_697046.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-10A TCGA-BH-A0DK-10A-01D-A059-01 3eb562ea-e41a-4b24-9eaa-38d3996cd4e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F01_697046.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-10A TCGA-BH-A0DK-10A-01D-A059-01 3eb562ea-e41a-4b24-9eaa-38d3996cd4e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F01_697046.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-10A TCGA-BH-A0DK-10A-01D-A059-01 3eb562ea-e41a-4b24-9eaa-38d3996cd4e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F01_697046.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-10A TCGA-BH-A0DK-10A-01D-A059-01 3eb562ea-e41a-4b24-9eaa-38d3996cd4e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F01_697046.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-10A TCGA-BH-A0DK-10A-01D-A059-01 3eb562ea-e41a-4b24-9eaa-38d3996cd4e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F01_697046.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-10A TCGA-BH-A0DK-10A-01D-A060-02 1cc19e5f-922b-4878-a0e9-546a8c3fc949 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-10A TCGA-BH-A0DK-10A-01D-A074-08 5d849c00-0520-471d-b154-3d505b110667 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-10A TCGA-BH-A0DK-10A-01D-A075-09 57b95f2e-2b0d-4a41-ac3e-d97f4f28b975 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-10A TCGA-BH-A0DK-10A-01W-A070-08 397d6847-d5e6-409c-a1af-6e1962c71349 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-10A TCGA-BH-A0DK-10A-01W-A071-09 0d68bf71-2788-4cda-a04d-ddf7de2fa8c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-10A TCGA-BH-A0DK-10A-01W-A071-09 0d68bf71-2788-4cda-a04d-ddf7de2fa8c9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-10A TCGA-BH-A0DK-10A-01X-A072-08 a3dd173e-7cbf-4899-a5f5-56c0474fcf68 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-10A TCGA-BH-A0DK-10A-01X-A073-09 e5897aaf-8d4e-41c0-9ef8-a6ac9a20234e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13D-A091-02 32b17459-4c6e-4f01-8dc6-1b73695a41e9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13D-A092-01 5556f493-7d5f-44d8-9968-02e549f8b9ff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13D-A092-01 5556f493-7d5f-44d8-9968-02e549f8b9ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G06_729736.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13D-A092-01 5556f493-7d5f-44d8-9968-02e549f8b9ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G06_729736.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13D-A092-01 5556f493-7d5f-44d8-9968-02e549f8b9ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G06_729736.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13D-A092-01 5556f493-7d5f-44d8-9968-02e549f8b9ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G06_729736.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13D-A092-01 5556f493-7d5f-44d8-9968-02e549f8b9ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G06_729736.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13D-A092-01 5556f493-7d5f-44d8-9968-02e549f8b9ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G06_729736.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13D-A092-01 5556f493-7d5f-44d8-9968-02e549f8b9ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G06_729736.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13D-A092-01 5556f493-7d5f-44d8-9968-02e549f8b9ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G06_729736.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13D-A093-05 0d80e1d7-9d09-441f-824f-af94918a12c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13D-A100-09 09bbc9f7-e5f4-4411-b539-6400e11e3322 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13D-A10Q-05 1344e43c-b925-4c77-bf0e-2419641d5f98 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13D-A10Q-05 1344e43c-b925-4c77-bf0e-2419641d5f98 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486013_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13D-A10Q-05 1344e43c-b925-4c77-bf0e-2419641d5f98 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486013_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13D-A10Q-05 1344e43c-b925-4c77-bf0e-2419641d5f98 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0DK-11A-13D-A10Q-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13D-A10Q-05 1344e43c-b925-4c77-bf0e-2419641d5f98 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0DK-11A-13D-A10Q-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13R-A089-07 4c1d73ba-31f8-4652-a83d-cc367dde9f43 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13R-A089-07 4c1d73ba-31f8-4652-a83d-cc367dde9f43 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012655_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 61 02-NOV-10 12.30.07.283000000 AM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13R-A089-07 4c1d73ba-31f8-4652-a83d-cc367dde9f43 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012655_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 61 02-NOV-10 12.25.38.097000000 AM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13R-A089-07 4c1d73ba-31f8-4652-a83d-cc367dde9f43 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012655_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 61 02-NOV-10 12.26.20.805000000 AM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13R-A089-07 4c1d73ba-31f8-4652-a83d-cc367dde9f43 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_492688.TCGA-BH-A0DK-11A-13R-A089-07.110912_UNC13-SN749_0111_AD0DEAABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13R-A089-07 4c1d73ba-31f8-4652-a83d-cc367dde9f43 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_492691.TCGA-BH-A0DK-11A-13R-A089-07.110912_UNC13-SN749_0111_AD0DEAABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13R-A089-07 4c1d73ba-31f8-4652-a83d-cc367dde9f43 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_492734.TCGA-BH-A0DK-11A-13R-A089-07.110912_UNC13-SN749_0111_AD0DEAABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13R-A090-13 f9021c55-d900-416a-8271-2525b075f733 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13R-A090-13 f9021c55-d900-416a-8271-2525b075f733 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0DK-11A-13R-A090-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13R-A090-13 f9021c55-d900-416a-8271-2525b075f733 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0DK-11A-13R-A090-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13W-A100-09 7ed0e2a4-53ff-456f-8772-e49db779b612 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13W-A100-09 7ed0e2a4-53ff-456f-8772-e49db779b612 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DK TCGA-BH-A0DK-11A TCGA-BH-A0DK-11A-13X-A100-09 6b803b3c-e2ec-462b-b000-ebfaeda62fd8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11D-A10X-02 b4e84c76-9a65-451f-906a-a9cbf4108a84 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11D-A10Y-09 6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11D-A10Y-09 6d1b5971-5b99-41a9-9a7d-79adc0d6dd5f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11D-A111-01 298c4e12-a695-48f1-830a-ae66a78e3ee4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11D-A111-01 298c4e12-a695-48f1-830a-ae66a78e3ee4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D10_735180.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11D-A111-01 298c4e12-a695-48f1-830a-ae66a78e3ee4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D10_735180.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11D-A111-01 298c4e12-a695-48f1-830a-ae66a78e3ee4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D10_735180.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11D-A111-01 298c4e12-a695-48f1-830a-ae66a78e3ee4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D10_735180.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11D-A111-01 298c4e12-a695-48f1-830a-ae66a78e3ee4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D10_735180.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11D-A111-01 298c4e12-a695-48f1-830a-ae66a78e3ee4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D10_735180.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11D-A111-01 298c4e12-a695-48f1-830a-ae66a78e3ee4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D10_735180.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11D-A111-01 298c4e12-a695-48f1-830a-ae66a78e3ee4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D10_735180.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11D-A112-05 ac948a2a-c295-46fa-bf88-a81ccf2837ee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11D-A112-05 ac948a2a-c295-46fa-bf88-a81ccf2837ee DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-BH-A0DL-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11D-A112-05 ac948a2a-c295-46fa-bf88-a81ccf2837ee DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-BH-A0DL-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11D-A112-05 ac948a2a-c295-46fa-bf88-a81ccf2837ee DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-BH-A0DL-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11R-A114-13 0417d162-5bf8-4c5a-a4fa-fa9333a2fc71 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11R-A114-13 0417d162-5bf8-4c5a-a4fa-fa9333a2fc71 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DL-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11R-A114-13 0417d162-5bf8-4c5a-a4fa-fa9333a2fc71 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DL-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11R-A115-07 1013446f-5beb-485d-809a-efe81a2138dd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11R-A115-07 1013446f-5beb-485d-809a-efe81a2138dd Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012743_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11R-A115-07 1013446f-5beb-485d-809a-efe81a2138dd Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012743_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11R-A115-07 1013446f-5beb-485d-809a-efe81a2138dd Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012743_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11R-A115-07 1013446f-5beb-485d-809a-efe81a2138dd RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_448830.TCGA-BH-A0DL-01A-11R-A115-07.110608_UNC13-SN749_0073_BD0CV8ABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11R-A115-07 1013446f-5beb-485d-809a-efe81a2138dd RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_449055.TCGA-BH-A0DL-01A-11R-A115-07.110608_UNC13-SN749_0073_BD0CV8ABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11R-A115-07 1013446f-5beb-485d-809a-efe81a2138dd RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_449188.TCGA-BH-A0DL-01A-11R-A115-07.110608_UNC13-SN749_0073_BD0CV8ABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-01A TCGA-BH-A0DL-01A-11W-A12T-09 4270922b-23ba-4f98-9001-0ceb86a21ad5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-10A TCGA-BH-A0DL-10A-01D-A10Z-02 747fafb3-cd1f-4ab3-930a-08d38a9115ab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-10A TCGA-BH-A0DL-10A-01D-A110-09 261ed647-077d-4071-978f-ca030947436b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-10A TCGA-BH-A0DL-10A-01D-A110-09 261ed647-077d-4071-978f-ca030947436b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-10A TCGA-BH-A0DL-10A-01D-A113-01 b4e232d8-acc8-4cf3-9901-dc3b645c463c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-10A TCGA-BH-A0DL-10A-01D-A113-01 b4e232d8-acc8-4cf3-9901-dc3b645c463c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B01_735184.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0DL TCGA-BH-A0DL-10A TCGA-BH-A0DL-10A-01D-A113-01 b4e232d8-acc8-4cf3-9901-dc3b645c463c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B01_735184.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-10A TCGA-BH-A0DL-10A-01D-A113-01 b4e232d8-acc8-4cf3-9901-dc3b645c463c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B01_735184.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-10A TCGA-BH-A0DL-10A-01D-A113-01 b4e232d8-acc8-4cf3-9901-dc3b645c463c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B01_735184.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-10A TCGA-BH-A0DL-10A-01D-A113-01 b4e232d8-acc8-4cf3-9901-dc3b645c463c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B01_735184.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-10A TCGA-BH-A0DL-10A-01D-A113-01 b4e232d8-acc8-4cf3-9901-dc3b645c463c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B01_735184.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-10A TCGA-BH-A0DL-10A-01D-A113-01 b4e232d8-acc8-4cf3-9901-dc3b645c463c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B01_735184.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-10A TCGA-BH-A0DL-10A-01D-A113-01 b4e232d8-acc8-4cf3-9901-dc3b645c463c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B01_735184.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-10A TCGA-BH-A0DL-10A-01W-A12U-09 bd885966-8e1a-4657-ac30-d9fea96c8896 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13D-A10X-02 50da0037-e9cb-4c91-a789-c8c4f8ff5410 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13D-A10Y-09 96629b51-8ce6-4a2d-add3-3cd5c1a5c9dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13D-A10Y-09 96629b51-8ce6-4a2d-add3-3cd5c1a5c9dc Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13D-A111-01 62727a55-f8a4-49f8-be77-f778f844b27c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13D-A111-01 62727a55-f8a4-49f8-be77-f778f844b27c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D11_735190.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13D-A111-01 62727a55-f8a4-49f8-be77-f778f844b27c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D11_735190.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13D-A111-01 62727a55-f8a4-49f8-be77-f778f844b27c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D11_735190.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13D-A111-01 62727a55-f8a4-49f8-be77-f778f844b27c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D11_735190.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13D-A111-01 62727a55-f8a4-49f8-be77-f778f844b27c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D11_735190.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13D-A111-01 62727a55-f8a4-49f8-be77-f778f844b27c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D11_735190.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13D-A111-01 62727a55-f8a4-49f8-be77-f778f844b27c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D11_735190.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13D-A111-01 62727a55-f8a4-49f8-be77-f778f844b27c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D11_735190.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13D-A112-05 0744b2ca-ae79-40d6-9fe0-6f4cc1a65a58 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13D-A112-05 0744b2ca-ae79-40d6-9fe0-6f4cc1a65a58 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-BH-A0DL-11A-13D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13D-A112-05 0744b2ca-ae79-40d6-9fe0-6f4cc1a65a58 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-BH-A0DL-11A-13D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13D-A112-05 0744b2ca-ae79-40d6-9fe0-6f4cc1a65a58 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-BH-A0DL-11A-13D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13R-A114-13 2b98cc10-863d-4c6e-85cc-ea0c8143203f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13R-A114-13 2b98cc10-863d-4c6e-85cc-ea0c8143203f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DL-11A-13R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13R-A114-13 2b98cc10-863d-4c6e-85cc-ea0c8143203f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DL-11A-13R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13R-A115-07 f6745ef4-b601-4d5f-bb7a-0bf7e1f1671d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13R-A115-07 f6745ef4-b601-4d5f-bb7a-0bf7e1f1671d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012760_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13R-A115-07 f6745ef4-b601-4d5f-bb7a-0bf7e1f1671d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012760_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13R-A115-07 f6745ef4-b601-4d5f-bb7a-0bf7e1f1671d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012760_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13R-A115-07 f6745ef4-b601-4d5f-bb7a-0bf7e1f1671d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_448846.TCGA-BH-A0DL-11A-13R-A115-07.110608_UNC13-SN749_0073_BD0CV8ABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13R-A115-07 f6745ef4-b601-4d5f-bb7a-0bf7e1f1671d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_448886.TCGA-BH-A0DL-11A-13R-A115-07.110608_UNC13-SN749_0073_BD0CV8ABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13R-A115-07 f6745ef4-b601-4d5f-bb7a-0bf7e1f1671d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_449148.TCGA-BH-A0DL-11A-13R-A115-07.110608_UNC13-SN749_0073_BD0CV8ABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DL TCGA-BH-A0DL-11A TCGA-BH-A0DL-11A-13W-A12T-09 8adde29d-b46a-490e-adeb-593fd1b08fb8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-01B TCGA-BH-A0DO-01B-11D-A129-02 42d6fcd8-b660-4059-9de1-d9b177ed3621 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-01B TCGA-BH-A0DO-01B-11D-A12A-01 579b5e2f-f3c6-48b6-8769-4950ac5c6abb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-01B TCGA-BH-A0DO-01B-11D-A12A-01 579b5e2f-f3c6-48b6-8769-4950ac5c6abb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B08_741452.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A0DO TCGA-BH-A0DO-01B TCGA-BH-A0DO-01B-11D-A12A-01 579b5e2f-f3c6-48b6-8769-4950ac5c6abb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B08_741452.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-01B TCGA-BH-A0DO-01B-11D-A12A-01 579b5e2f-f3c6-48b6-8769-4950ac5c6abb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B08_741452.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-01B TCGA-BH-A0DO-01B-11D-A12A-01 579b5e2f-f3c6-48b6-8769-4950ac5c6abb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B08_741452.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-01B TCGA-BH-A0DO-01B-11D-A12A-01 579b5e2f-f3c6-48b6-8769-4950ac5c6abb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B08_741452.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-01B TCGA-BH-A0DO-01B-11D-A12A-01 579b5e2f-f3c6-48b6-8769-4950ac5c6abb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B08_741452.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-01B TCGA-BH-A0DO-01B-11D-A12A-01 579b5e2f-f3c6-48b6-8769-4950ac5c6abb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B08_741452.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-01B TCGA-BH-A0DO-01B-11D-A12A-01 579b5e2f-f3c6-48b6-8769-4950ac5c6abb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B08_741452.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-01B TCGA-BH-A0DO-01B-11D-A12B-09 14649437-79a6-40bd-87b1-a278bfb2dcda Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-01B TCGA-BH-A0DO-01B-11D-A12B-09 14649437-79a6-40bd-87b1-a278bfb2dcda Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-01B TCGA-BH-A0DO-01B-11D-A12E-05 d5d998e6-783a-4c8a-af44-eaa3fb81625a Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A0DO-01B-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-01B TCGA-BH-A0DO-01B-11D-A12E-05 d5d998e6-783a-4c8a-af44-eaa3fb81625a DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A0DO-01B-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-01B TCGA-BH-A0DO-01B-11R-A12C-13 57d18002-aa7d-41e7-8271-1995e5b9acbb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-01B TCGA-BH-A0DO-01B-11R-A12C-13 57d18002-aa7d-41e7-8271-1995e5b9acbb miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DO-01B-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-01B TCGA-BH-A0DO-01B-11R-A12C-13 57d18002-aa7d-41e7-8271-1995e5b9acbb miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012888_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-01B TCGA-BH-A0DO-01B-11R-A12D-07 46892fa4-f179-4991-99da-629d8cf936f6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012888_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-01B TCGA-BH-A0DO-01B-11R-A12D-07 46892fa4-f179-4991-99da-629d8cf936f6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012888_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-01B TCGA-BH-A0DO-01B-11R-A12D-07 46892fa4-f179-4991-99da-629d8cf936f6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439322.TCGA-BH-A0DO-01B-11R-A12D-07.110715_UNC14-SN744_0142_AB099EABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-01B TCGA-BH-A0DO-01B-11R-A12D-07 46892fa4-f179-4991-99da-629d8cf936f6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439444.TCGA-BH-A0DO-01B-11R-A12D-07.110715_UNC14-SN744_0142_AB099EABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-01B TCGA-BH-A0DO-01B-11R-A12D-07 46892fa4-f179-4991-99da-629d8cf936f6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439587.TCGA-BH-A0DO-01B-11R-A12D-07.110715_UNC14-SN744_0142_AB099EABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-01B TCGA-BH-A0DO-01B-11W-A12S-09 3fae3e60-318f-48a6-904d-6e087228c26a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22D-A129-02 d8c31a4c-ed68-4599-a3cc-6f9557073c68 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22D-A12A-01 75d1145a-26a4-4f3c-b30c-54b2c1fb9534 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22D-A12A-01 75d1145a-26a4-4f3c-b30c-54b2c1fb9534 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H03_741422.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22D-A12A-01 75d1145a-26a4-4f3c-b30c-54b2c1fb9534 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H03_741422.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22D-A12A-01 75d1145a-26a4-4f3c-b30c-54b2c1fb9534 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H03_741422.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22D-A12A-01 75d1145a-26a4-4f3c-b30c-54b2c1fb9534 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H03_741422.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22D-A12A-01 75d1145a-26a4-4f3c-b30c-54b2c1fb9534 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H03_741422.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22D-A12A-01 75d1145a-26a4-4f3c-b30c-54b2c1fb9534 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H03_741422.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22D-A12A-01 75d1145a-26a4-4f3c-b30c-54b2c1fb9534 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H03_741422.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22D-A12A-01 75d1145a-26a4-4f3c-b30c-54b2c1fb9534 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H03_741422.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22D-A12B-09 d5eab3e3-4a3c-4820-807d-a837c2d054f1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22D-A12B-09 d5eab3e3-4a3c-4820-807d-a837c2d054f1 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22D-A12E-05 be880e25-435c-49c8-9479-d31381f9c1db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22D-A12E-05 be880e25-435c-49c8-9479-d31381f9c1db DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A0DO-11A-22D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22D-A12E-05 be880e25-435c-49c8-9479-d31381f9c1db DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A0DO-11A-22D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22D-A12E-05 be880e25-435c-49c8-9479-d31381f9c1db DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A0DO-11A-22D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22R-A12C-13 4d5191c3-649f-4946-b0ab-23a454dacb23 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22R-A12C-13 4d5191c3-649f-4946-b0ab-23a454dacb23 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DO-11A-22R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22R-A12C-13 4d5191c3-649f-4946-b0ab-23a454dacb23 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DO-11A-22R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22R-A12D-07 eb9e415f-0545-4e97-ad35-b56b0f3db79b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22R-A12D-07 eb9e415f-0545-4e97-ad35-b56b0f3db79b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012885_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22R-A12D-07 eb9e415f-0545-4e97-ad35-b56b0f3db79b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012885_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22R-A12D-07 eb9e415f-0545-4e97-ad35-b56b0f3db79b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012885_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22R-A12D-07 eb9e415f-0545-4e97-ad35-b56b0f3db79b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439272.TCGA-BH-A0DO-11A-22R-A12D-07.110715_UNC14-SN744_0142_AB099EABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22R-A12D-07 eb9e415f-0545-4e97-ad35-b56b0f3db79b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439289.TCGA-BH-A0DO-11A-22R-A12D-07.110715_UNC14-SN744_0142_AB099EABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22R-A12D-07 eb9e415f-0545-4e97-ad35-b56b0f3db79b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439419.TCGA-BH-A0DO-11A-22R-A12D-07.110715_UNC14-SN744_0142_AB099EABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DO TCGA-BH-A0DO-11A TCGA-BH-A0DO-11A-22W-A12S-09 03f347e0-4dfe-446a-a51b-0ceb7563ea6a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21D-A058-05 dddbeccb-008f-4a81-95e8-ddd9e47c39ab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21D-A059-01 da040b34-361d-4d3c-9ea1-e9964b67f19b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21D-A059-01 da040b34-361d-4d3c-9ea1-e9964b67f19b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B01_697160.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21D-A059-01 da040b34-361d-4d3c-9ea1-e9964b67f19b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B01_697160.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21D-A059-01 da040b34-361d-4d3c-9ea1-e9964b67f19b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B01_697160.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21D-A059-01 da040b34-361d-4d3c-9ea1-e9964b67f19b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B01_697160.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21D-A059-01 da040b34-361d-4d3c-9ea1-e9964b67f19b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B01_697160.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21D-A059-01 da040b34-361d-4d3c-9ea1-e9964b67f19b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B01_697160.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21D-A059-01 da040b34-361d-4d3c-9ea1-e9964b67f19b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B01_697160.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21D-A059-01 da040b34-361d-4d3c-9ea1-e9964b67f19b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B01_697160.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21D-A060-02 311ca046-edf6-4cf0-868a-14b8daaf1c1c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21D-A074-08 ee9851c7-edd8-4a1e-a360-1be0bb7bb3f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21D-A075-09 cc8f1435-7c9c-4536-9d89-9f14404c1625 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21D-A10P-05 bec73e62-8ecd-4bbc-9818-ea522ab05830 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21D-A10P-05 bec73e62-8ecd-4bbc-9818-ea522ab05830 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486021_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21D-A10P-05 bec73e62-8ecd-4bbc-9818-ea522ab05830 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486021_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21D-A10P-05 bec73e62-8ecd-4bbc-9818-ea522ab05830 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0DP-01A-21D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21D-A10P-05 bec73e62-8ecd-4bbc-9818-ea522ab05830 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0DP-01A-21D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21R-A056-07 72967b75-a711-425a-819d-dd673c5edc44 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21R-A056-07 72967b75-a711-425a-819d-dd673c5edc44 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012261_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21R-A056-07 72967b75-a711-425a-819d-dd673c5edc44 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012261_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21R-A056-07 72967b75-a711-425a-819d-dd673c5edc44 Expression-Genes AgilentG4502A_07_3 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443195.TCGA-BH-A0DP-01A-21R-A056-07.110325_UNC11-SN627_0070_AB02DVABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21R-A056-07 72967b75-a711-425a-819d-dd673c5edc44 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443217.TCGA-BH-A0DP-01A-21R-A056-07.110325_UNC11-SN627_0070_AB02DVABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21R-A057-13 2a0cf27d-22e0-460d-96f6-5e46b759de86 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21R-A057-13 2a0cf27d-22e0-460d-96f6-5e46b759de86 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0DP-01A-21R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21R-A057-13 2a0cf27d-22e0-460d-96f6-5e46b759de86 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0DP-01A-21R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21W-A070-08 e6103428-231b-4883-8f53-f350845a3dfa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21W-A071-09 5a83cbfe-1803-42ca-820b-a4045e413f90 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21W-A071-09 5a83cbfe-1803-42ca-820b-a4045e413f90 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21X-A072-08 7e1893ea-b73e-4df9-b1d1-3da40b9fbc63 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-01A TCGA-BH-A0DP-01A-21X-A073-09 cdc88717-0f92-4e79-bfab-69a89266e7f2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-10A TCGA-BH-A0DP-10A-01D-A059-01 bd3519b0-e910-4e32-8530-a3e758dbfe0a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-10A TCGA-BH-A0DP-10A-01D-A059-01 bd3519b0-e910-4e32-8530-a3e758dbfe0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A01_697138.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0DP TCGA-BH-A0DP-10A TCGA-BH-A0DP-10A-01D-A059-01 bd3519b0-e910-4e32-8530-a3e758dbfe0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A01_697138.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-10A TCGA-BH-A0DP-10A-01D-A059-01 bd3519b0-e910-4e32-8530-a3e758dbfe0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A01_697138.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-10A TCGA-BH-A0DP-10A-01D-A059-01 bd3519b0-e910-4e32-8530-a3e758dbfe0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A01_697138.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-10A TCGA-BH-A0DP-10A-01D-A059-01 bd3519b0-e910-4e32-8530-a3e758dbfe0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A01_697138.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-10A TCGA-BH-A0DP-10A-01D-A059-01 bd3519b0-e910-4e32-8530-a3e758dbfe0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A01_697138.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-10A TCGA-BH-A0DP-10A-01D-A059-01 bd3519b0-e910-4e32-8530-a3e758dbfe0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A01_697138.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-10A TCGA-BH-A0DP-10A-01D-A059-01 bd3519b0-e910-4e32-8530-a3e758dbfe0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A01_697138.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-10A TCGA-BH-A0DP-10A-01D-A060-02 6d21d600-d56f-4e38-afec-5d219f1a5b9d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-10A TCGA-BH-A0DP-10A-01D-A074-08 5b451516-7033-4629-a704-c57ee9db7af3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-10A TCGA-BH-A0DP-10A-01D-A075-09 26059ca4-b71e-45c6-96c0-6127bd402f9a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-10A TCGA-BH-A0DP-10A-01W-A070-08 ee694bcf-3c72-4d02-9005-6b69f95a2398 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-10A TCGA-BH-A0DP-10A-01W-A071-09 63666721-38a8-46c4-b519-89dba2c58eb1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-10A TCGA-BH-A0DP-10A-01W-A071-09 63666721-38a8-46c4-b519-89dba2c58eb1 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-10A TCGA-BH-A0DP-10A-01X-A072-08 65d03701-7237-4e69-8414-4b704031e174 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-10A TCGA-BH-A0DP-10A-01X-A073-09 89156584-7991-44a7-b192-e1f2a848b5a0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-11A TCGA-BH-A0DP-11A-12D-A091-02 b6c1e86e-9fae-43c5-a36b-a80f3d91aa3b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-11A TCGA-BH-A0DP-11A-12D-A092-01 7792d970-ef25-4685-9f57-7409eeb02d64 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-11A TCGA-BH-A0DP-11A-12D-A092-01 7792d970-ef25-4685-9f57-7409eeb02d64 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G07_729620.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0DP TCGA-BH-A0DP-11A TCGA-BH-A0DP-11A-12D-A092-01 7792d970-ef25-4685-9f57-7409eeb02d64 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G07_729620.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-11A TCGA-BH-A0DP-11A-12D-A092-01 7792d970-ef25-4685-9f57-7409eeb02d64 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G07_729620.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-11A TCGA-BH-A0DP-11A-12D-A092-01 7792d970-ef25-4685-9f57-7409eeb02d64 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G07_729620.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-11A TCGA-BH-A0DP-11A-12D-A092-01 7792d970-ef25-4685-9f57-7409eeb02d64 SNP Genome_Wide_SNP_6 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Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0DP-11A-12D-A10Q-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-11A TCGA-BH-A0DP-11A-12D-A10Q-05 0f1a6e4d-bce9-4e6a-9e03-690fb2a4664f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0DP-11A-12D-A10Q-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-11A TCGA-BH-A0DP-11A-12R-A089-07 6ff2976a-2570-409b-afde-b7d2e7f2e4ea Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_492773.TCGA-BH-A0DP-11A-12R-A089-07.110912_UNC13-SN749_0111_AD0DEAABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-11A TCGA-BH-A0DP-11A-12R-A090-13 6debea32-2026-49fb-b65d-cc63ba74993e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DP TCGA-BH-A0DP-11A TCGA-BH-A0DP-11A-12R-A090-13 6debea32-2026-49fb-b65d-cc63ba74993e miRNASeq IlluminaGA_miRNASeq 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1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-01A TCGA-BH-A0DQ-01A-11D-A087-01 01bc5261-bf91-4f7b-a6b4-0e727c5e31d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A05_698030.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-BH-A0DQ TCGA-BH-A0DQ-01A TCGA-BH-A0DQ-01A-11D-A087-01 01bc5261-bf91-4f7b-a6b4-0e727c5e31d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A05_698030.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-01A TCGA-BH-A0DQ-01A-11D-A087-01 01bc5261-bf91-4f7b-a6b4-0e727c5e31d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A05_698030.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-01A TCGA-BH-A0DQ-01A-11D-A087-01 01bc5261-bf91-4f7b-a6b4-0e727c5e31d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_A05_698030.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-01A TCGA-BH-A0DQ-01A-11D-A087-01 01bc5261-bf91-4f7b-a6b4-0e727c5e31d2 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-01A TCGA-BH-A0DQ-01A-11D-A099-09 50da0300-124c-429e-8627-47b8ff640ea5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-01A TCGA-BH-A0DQ-01A-11D-A10P-05 43141f0c-7333-4518-a23f-26300c24aace Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-01A TCGA-BH-A0DQ-01A-11D-A10P-05 43141f0c-7333-4518-a23f-26300c24aace DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791004_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-01A TCGA-BH-A0DQ-01A-11D-A10P-05 43141f0c-7333-4518-a23f-26300c24aace DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791004_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-01A TCGA-BH-A0DQ-01A-11D-A10P-05 43141f0c-7333-4518-a23f-26300c24aace DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-BH-A0DQ-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-01A TCGA-BH-A0DQ-01A-11D-A10P-05 43141f0c-7333-4518-a23f-26300c24aace DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-BH-A0DQ-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-01A TCGA-BH-A0DQ-01A-11R-A084-07 6022db68-1e06-4974-b657-cd65aed560c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-01A TCGA-BH-A0DQ-01A-11R-A084-07 6022db68-1e06-4974-b657-cd65aed560c4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012594_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-BH-A0DQ TCGA-BH-A0DQ-01A TCGA-BH-A0DQ-01A-11R-A084-07 6022db68-1e06-4974-b657-cd65aed560c4 Expression-Genes AgilentG4502A_07_3 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443704.TCGA-BH-A0DQ-01A-11R-A084-07.110315_UNC9-SN296_0160_BB05L8ABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-01A TCGA-BH-A0DQ-01A-11R-A084-07 6022db68-1e06-4974-b657-cd65aed560c4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443755.TCGA-BH-A0DQ-01A-11R-A084-07.110315_UNC9-SN296_0160_BB05L8ABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-01A TCGA-BH-A0DQ-01A-11R-A084-07 6022db68-1e06-4974-b657-cd65aed560c4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443791.TCGA-BH-A0DQ-01A-11R-A084-07.110315_UNC9-SN296_0160_BB05L8ABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-01A TCGA-BH-A0DQ-01A-11R-A085-13 6b5b0c17-d07a-480d-b573-73b54e16ab0a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-01A TCGA-BH-A0DQ-01A-11R-A085-13 6b5b0c17-d07a-480d-b573-73b54e16ab0a miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0DQ-01A-11R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-01A TCGA-BH-A0DQ-01A-11R-A085-13 6b5b0c17-d07a-480d-b573-73b54e16ab0a miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0DQ-01A-11R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-01A TCGA-BH-A0DQ-01A-11W-A097-09 47832ba2-27de-43bf-8b04-7a6a4b78f16c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-01A TCGA-BH-A0DQ-01A-11X-A098-09 c84c42a9-4c43-4516-a90f-bdeeb4bac1af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-10A TCGA-BH-A0DQ-10A-01D-A086-02 a5b01349-ecf2-4098-8bb0-b9bc4d76324e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-10A TCGA-BH-A0DQ-10A-01D-A087-01 fdf4d9b5-952b-4251-b25a-4628c755e8bc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-10A TCGA-BH-A0DQ-10A-01D-A087-01 fdf4d9b5-952b-4251-b25a-4628c755e8bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B11_698038.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-BH-A0DQ TCGA-BH-A0DQ-10A TCGA-BH-A0DQ-10A-01D-A087-01 fdf4d9b5-952b-4251-b25a-4628c755e8bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B11_698038.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-10A TCGA-BH-A0DQ-10A-01D-A087-01 fdf4d9b5-952b-4251-b25a-4628c755e8bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B11_698038.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-10A TCGA-BH-A0DQ-10A-01D-A087-01 fdf4d9b5-952b-4251-b25a-4628c755e8bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B11_698038.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-10A TCGA-BH-A0DQ-10A-01D-A087-01 fdf4d9b5-952b-4251-b25a-4628c755e8bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B11_698038.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-10A TCGA-BH-A0DQ-10A-01D-A087-01 fdf4d9b5-952b-4251-b25a-4628c755e8bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B11_698038.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-10A TCGA-BH-A0DQ-10A-01D-A087-01 fdf4d9b5-952b-4251-b25a-4628c755e8bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B11_698038.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-10A TCGA-BH-A0DQ-10A-01D-A087-01 fdf4d9b5-952b-4251-b25a-4628c755e8bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B11_698038.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-10A TCGA-BH-A0DQ-10A-01D-A099-09 05825f2e-ce2f-45b6-a04a-a0c144120407 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-10A TCGA-BH-A0DQ-10A-01D-A099-09 05825f2e-ce2f-45b6-a04a-a0c144120407 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-10A TCGA-BH-A0DQ-10A-01D-A099-09 05825f2e-ce2f-45b6-a04a-a0c144120407 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-10A TCGA-BH-A0DQ-10A-01W-A097-09 5be87d12-162b-486c-a683-836ba1ad6b4b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-10A TCGA-BH-A0DQ-10A-01X-A098-09 3a8d3e91-fad8-41ba-844e-46c066ed3c98 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-11A TCGA-BH-A0DQ-11A-12D-A091-02 22061301-3cd3-4a08-9ff7-0ecd1cdcd1ba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-11A TCGA-BH-A0DQ-11A-12D-A092-01 0e3a10ef-0f85-4009-920a-e5ff5b526e3b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G08_729570.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G08_729570.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G08_729570.ismpolish.data.txt'. TCGA-BH-A0DQ TCGA-BH-A0DQ-11A TCGA-BH-A0DQ-11A-12D-A092-01 0e3a10ef-0f85-4009-920a-e5ff5b526e3b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G08_729570.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G08_729570.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G08_729570.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G08_729570.ismpolish.data.txt'. TCGA-BH-A0DQ TCGA-BH-A0DQ-11A TCGA-BH-A0DQ-11A-12D-A092-01 0e3a10ef-0f85-4009-920a-e5ff5b526e3b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G08_729570.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G08_729570.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G08_729570.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G08_729570.ismpolish.data.txt'. TCGA-BH-A0DQ TCGA-BH-A0DQ-11A TCGA-BH-A0DQ-11A-12D-A093-05 4a239d05-502b-44f0-ac47-e3091d5e99df Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-11A TCGA-BH-A0DQ-11A-12D-A100-09 aa3710e7-1b27-4a66-996d-d716171d7f6d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-11A TCGA-BH-A0DQ-11A-12D-A100-09 aa3710e7-1b27-4a66-996d-d716171d7f6d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-11A TCGA-BH-A0DQ-11A-12D-A100-09 aa3710e7-1b27-4a66-996d-d716171d7f6d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-11A TCGA-BH-A0DQ-11A-12D-A10Q-05 a69b0bce-3e02-4f82-b719-b91262edf24e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-11A TCGA-BH-A0DQ-11A-12D-A10Q-05 a69b0bce-3e02-4f82-b719-b91262edf24e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6005486013_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-11A TCGA-BH-A0DQ-11A-12D-A10Q-05 a69b0bce-3e02-4f82-b719-b91262edf24e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6005486013_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-11A TCGA-BH-A0DQ-11A-12D-A10Q-05 a69b0bce-3e02-4f82-b719-b91262edf24e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-BH-A0DQ-11A-12D-A10Q-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-11A TCGA-BH-A0DQ-11A-12D-A10Q-05 a69b0bce-3e02-4f82-b719-b91262edf24e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-BH-A0DQ-11A-12D-A10Q-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-11A TCGA-BH-A0DQ-11A-12R-A089-07 2b11e565-01a8-4054-a200-03e06765bd5e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-11A TCGA-BH-A0DQ-11A-12R-A089-07 2b11e565-01a8-4054-a200-03e06765bd5e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012659_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-BH-A0DQ TCGA-BH-A0DQ-11A TCGA-BH-A0DQ-11A-12R-A089-07 2b11e565-01a8-4054-a200-03e06765bd5e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012659_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-BH-A0DQ TCGA-BH-A0DQ-11A TCGA-BH-A0DQ-11A-12R-A089-07 2b11e565-01a8-4054-a200-03e06765bd5e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012659_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-BH-A0DQ TCGA-BH-A0DQ-11A TCGA-BH-A0DQ-11A-12R-A089-07 2b11e565-01a8-4054-a200-03e06765bd5e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_492689.TCGA-BH-A0DQ-11A-12R-A089-07.110912_UNC13-SN749_0111_AD0DEAABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-11A TCGA-BH-A0DQ-11A-12R-A089-07 2b11e565-01a8-4054-a200-03e06765bd5e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_492754.TCGA-BH-A0DQ-11A-12R-A089-07.110912_UNC13-SN749_0111_AD0DEAABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-11A TCGA-BH-A0DQ-11A-12R-A089-07 2b11e565-01a8-4054-a200-03e06765bd5e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_492774.TCGA-BH-A0DQ-11A-12R-A089-07.110912_UNC13-SN749_0111_AD0DEAABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-11A TCGA-BH-A0DQ-11A-12R-A090-13 91884961-fca0-443b-9a60-b671d5a9acd0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-11A TCGA-BH-A0DQ-11A-12R-A090-13 91884961-fca0-443b-9a60-b671d5a9acd0 miRNASeq IlluminaGA_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DQ TCGA-BH-A0DQ-11A TCGA-BH-A0DQ-11A-12X-A100-09 fe823b36-cedc-48d2-b4eb-cff33ef6cfdf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11D-A058-05 a29440e6-f937-44e1-a76d-115643ae343f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11D-A059-01 67942518-8522-4ba3-8458-cddcc98421c3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11D-A059-01 67942518-8522-4ba3-8458-cddcc98421c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C07_697170.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11D-A059-01 67942518-8522-4ba3-8458-cddcc98421c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C07_697170.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11D-A059-01 67942518-8522-4ba3-8458-cddcc98421c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C07_697170.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11D-A059-01 67942518-8522-4ba3-8458-cddcc98421c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C07_697170.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11D-A059-01 67942518-8522-4ba3-8458-cddcc98421c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C07_697170.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11D-A059-01 67942518-8522-4ba3-8458-cddcc98421c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C07_697170.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11D-A059-01 67942518-8522-4ba3-8458-cddcc98421c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C07_697170.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11D-A059-01 67942518-8522-4ba3-8458-cddcc98421c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C07_697170.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11D-A060-02 01cc65d8-79a2-44de-b87b-de49293ba8f0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11D-A074-08 5a0c0518-dc70-44d8-ab32-1172a6154269 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11D-A075-09 48a7c49c-2c45-4c20-940b-e3b628d4665a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11D-A10P-05 91a91f92-6ce7-4545-9573-1d1f6b28946d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11D-A10P-05 91a91f92-6ce7-4545-9573-1d1f6b28946d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486019_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11D-A10P-05 91a91f92-6ce7-4545-9573-1d1f6b28946d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486019_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11D-A10P-05 91a91f92-6ce7-4545-9573-1d1f6b28946d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0DS-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11D-A10P-05 91a91f92-6ce7-4545-9573-1d1f6b28946d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0DS-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11R-A056-07 00ee8acd-0841-4c85-a99a-8966a6828dd7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11R-A056-07 00ee8acd-0841-4c85-a99a-8966a6828dd7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012201_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11R-A056-07 00ee8acd-0841-4c85-a99a-8966a6828dd7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012201_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11R-A056-07 00ee8acd-0841-4c85-a99a-8966a6828dd7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012201_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11R-A056-07 00ee8acd-0841-4c85-a99a-8966a6828dd7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443021.TCGA-BH-A0DS-01A-11R-A056-07.110325_UNC11-SN627_0070_AB02DVABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11R-A056-07 00ee8acd-0841-4c85-a99a-8966a6828dd7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443183.TCGA-BH-A0DS-01A-11R-A056-07.110325_UNC11-SN627_0070_AB02DVABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11R-A056-07 00ee8acd-0841-4c85-a99a-8966a6828dd7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443258.TCGA-BH-A0DS-01A-11R-A056-07.110325_UNC11-SN627_0070_AB02DVABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11R-A057-13 dd80edb0-8f2d-42e4-90ba-6046fec46ebe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11R-A057-13 dd80edb0-8f2d-42e4-90ba-6046fec46ebe miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0DS-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11R-A057-13 dd80edb0-8f2d-42e4-90ba-6046fec46ebe miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0DS-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11W-A070-08 03e715a7-482b-4400-8941-7b3f090dc70e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11W-A071-09 6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11W-A071-09 6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11X-A072-08 08d9c755-dbb4-4669-86d1-123db135db96 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-01A TCGA-BH-A0DS-01A-11X-A073-09 d074d78d-275f-40cc-92f5-a0f2b37d0c07 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-10A TCGA-BH-A0DS-10A-01D-A059-01 50ef1b13-52ed-4938-970d-8d51ada9fdb0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-10A TCGA-BH-A0DS-10A-01D-A059-01 50ef1b13-52ed-4938-970d-8d51ada9fdb0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F04_697202.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0DS TCGA-BH-A0DS-10A TCGA-BH-A0DS-10A-01D-A059-01 50ef1b13-52ed-4938-970d-8d51ada9fdb0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F04_697202.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-10A TCGA-BH-A0DS-10A-01D-A059-01 50ef1b13-52ed-4938-970d-8d51ada9fdb0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F04_697202.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-10A TCGA-BH-A0DS-10A-01D-A059-01 50ef1b13-52ed-4938-970d-8d51ada9fdb0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F04_697202.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-10A TCGA-BH-A0DS-10A-01D-A059-01 50ef1b13-52ed-4938-970d-8d51ada9fdb0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F04_697202.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-10A TCGA-BH-A0DS-10A-01D-A059-01 50ef1b13-52ed-4938-970d-8d51ada9fdb0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F04_697202.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-10A TCGA-BH-A0DS-10A-01D-A059-01 50ef1b13-52ed-4938-970d-8d51ada9fdb0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F04_697202.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-10A TCGA-BH-A0DS-10A-01D-A059-01 50ef1b13-52ed-4938-970d-8d51ada9fdb0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F04_697202.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-10A TCGA-BH-A0DS-10A-01D-A060-02 7889c1eb-6aa7-4f83-a354-2e4f3cf39714 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-10A TCGA-BH-A0DS-10A-01D-A074-08 57bb56c4-d05c-40ea-ad5f-48b84eb8840c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-10A TCGA-BH-A0DS-10A-01D-A075-09 ed172684-b111-4872-b5a8-e664bce98da1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-10A TCGA-BH-A0DS-10A-01W-A070-08 14718804-490f-4e33-9dd8-bf54075e94af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-10A TCGA-BH-A0DS-10A-01W-A071-09 fb5e6f04-b651-434e-901a-11d84eb99da7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-10A TCGA-BH-A0DS-10A-01W-A071-09 fb5e6f04-b651-434e-901a-11d84eb99da7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-10A TCGA-BH-A0DS-10A-01X-A072-08 87be4188-5239-4c32-833d-2bf3fa0fb4ca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DS TCGA-BH-A0DS-10A TCGA-BH-A0DS-10A-01X-A073-09 59b5c14e-7c83-477e-81ab-47d10b77eabd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21D-A129-02 ac6643dc-3fa8-4f6d-8545-29f07072d10b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21D-A12A-01 cc9ee06d-27bf-4038-bbcd-c95693b96321 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21D-A12A-01 cc9ee06d-27bf-4038-bbcd-c95693b96321 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H06_741558.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21D-A12A-01 cc9ee06d-27bf-4038-bbcd-c95693b96321 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H06_741558.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21D-A12A-01 cc9ee06d-27bf-4038-bbcd-c95693b96321 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H06_741558.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21D-A12A-01 cc9ee06d-27bf-4038-bbcd-c95693b96321 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H06_741558.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21D-A12A-01 cc9ee06d-27bf-4038-bbcd-c95693b96321 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H06_741558.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21D-A12A-01 cc9ee06d-27bf-4038-bbcd-c95693b96321 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H06_741558.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21D-A12A-01 cc9ee06d-27bf-4038-bbcd-c95693b96321 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H06_741558.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21D-A12A-01 cc9ee06d-27bf-4038-bbcd-c95693b96321 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H06_741558.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21D-A12B-09 30dbe353-86d5-40ed-84c2-dbddf7beb17b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21D-A12B-09 30dbe353-86d5-40ed-84c2-dbddf7beb17b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21D-A12E-05 e9b35dde-c613-4c06-a493-98d64d17a315 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21D-A12E-05 e9b35dde-c613-4c06-a493-98d64d17a315 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A0DT-01A-21D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21D-A12E-05 e9b35dde-c613-4c06-a493-98d64d17a315 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A0DT-01A-21D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21D-A12E-05 e9b35dde-c613-4c06-a493-98d64d17a315 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A0DT-01A-21D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21R-A12C-13 6b52ecfe-4d67-4a1d-b97e-50ab3ae6e632 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21R-A12C-13 6b52ecfe-4d67-4a1d-b97e-50ab3ae6e632 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DT-01A-21R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21R-A12C-13 6b52ecfe-4d67-4a1d-b97e-50ab3ae6e632 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DT-01A-21R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21R-A12D-07 e88bcf68-e904-4511-92f6-01cbd0da62de Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21R-A12D-07 e88bcf68-e904-4511-92f6-01cbd0da62de Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012907_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21R-A12D-07 e88bcf68-e904-4511-92f6-01cbd0da62de Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012907_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21R-A12D-07 e88bcf68-e904-4511-92f6-01cbd0da62de Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012907_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21R-A12D-07 e88bcf68-e904-4511-92f6-01cbd0da62de RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439437.TCGA-BH-A0DT-01A-21R-A12D-07.110715_UNC14-SN744_0142_AB099EABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21R-A12D-07 e88bcf68-e904-4511-92f6-01cbd0da62de RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439474.TCGA-BH-A0DT-01A-21R-A12D-07.110715_UNC14-SN744_0142_AB099EABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21R-A12D-07 e88bcf68-e904-4511-92f6-01cbd0da62de RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439572.TCGA-BH-A0DT-01A-21R-A12D-07.110715_UNC14-SN744_0142_AB099EABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-01A TCGA-BH-A0DT-01A-21W-A12S-09 970ca8cf-2d01-4e6a-8a6e-36a076ce39f1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12D-A129-02 164ae016-63a3-4bb4-b71f-df586dc6cbc8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12D-A12A-01 284d7303-310d-474f-964d-1da4257c1e4e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12D-A12A-01 284d7303-310d-474f-964d-1da4257c1e4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B12_741446.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12D-A12A-01 284d7303-310d-474f-964d-1da4257c1e4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B12_741446.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12D-A12A-01 284d7303-310d-474f-964d-1da4257c1e4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B12_741446.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12D-A12A-01 284d7303-310d-474f-964d-1da4257c1e4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B12_741446.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12D-A12A-01 284d7303-310d-474f-964d-1da4257c1e4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B12_741446.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12D-A12A-01 284d7303-310d-474f-964d-1da4257c1e4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B12_741446.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12D-A12A-01 284d7303-310d-474f-964d-1da4257c1e4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B12_741446.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12D-A12A-01 284d7303-310d-474f-964d-1da4257c1e4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B12_741446.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12D-A12B-09 03c623e2-04d7-43ea-ade1-5f5a619cd5c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12D-A12B-09 03c623e2-04d7-43ea-ade1-5f5a619cd5c8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12D-A12E-05 5cdcebb1-c5e0-400a-b387-b735561cbb17 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12D-A12E-05 5cdcebb1-c5e0-400a-b387-b735561cbb17 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A0DT-11A-12D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12D-A12E-05 5cdcebb1-c5e0-400a-b387-b735561cbb17 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A0DT-11A-12D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12D-A12E-05 5cdcebb1-c5e0-400a-b387-b735561cbb17 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A0DT-11A-12D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12R-A12C-13 2099cae0-821b-4859-be3a-b51c7e53b5d7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12R-A12C-13 2099cae0-821b-4859-be3a-b51c7e53b5d7 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DT-11A-12R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12R-A12C-13 2099cae0-821b-4859-be3a-b51c7e53b5d7 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DT-11A-12R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12R-A12D-07 75ba5803-449e-4770-8105-b675af8e6907 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12R-A12D-07 75ba5803-449e-4770-8105-b675af8e6907 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012894_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12R-A12D-07 75ba5803-449e-4770-8105-b675af8e6907 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012894_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12R-A12D-07 75ba5803-449e-4770-8105-b675af8e6907 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012894_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12R-A12D-07 75ba5803-449e-4770-8105-b675af8e6907 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439451.TCGA-BH-A0DT-11A-12R-A12D-07.110715_UNC14-SN744_0142_AB099EABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12R-A12D-07 75ba5803-449e-4770-8105-b675af8e6907 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439492.TCGA-BH-A0DT-11A-12R-A12D-07.110715_UNC14-SN744_0142_AB099EABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12R-A12D-07 75ba5803-449e-4770-8105-b675af8e6907 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439504.TCGA-BH-A0DT-11A-12R-A12D-07.110715_UNC14-SN744_0142_AB099EABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DT TCGA-BH-A0DT-11A TCGA-BH-A0DT-11A-12W-A12S-09 e9a9753a-492b-4a4f-bbbd-f3f1c055d337 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-01A TCGA-BH-A0DV-01A-21D-A12M-02 1c0b3461-e121-4ba6-8d19-5c125e0129aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-01A TCGA-BH-A0DV-01A-21D-A12N-01 5b44486e-95e0-4505-9c39-bbd1515f155b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-01A TCGA-BH-A0DV-01A-21D-A12N-01 5b44486e-95e0-4505-9c39-bbd1515f155b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E01_747952.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0DV TCGA-BH-A0DV-01A TCGA-BH-A0DV-01A-21D-A12N-01 5b44486e-95e0-4505-9c39-bbd1515f155b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E01_747952.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-01A TCGA-BH-A0DV-01A-21D-A12N-01 5b44486e-95e0-4505-9c39-bbd1515f155b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E01_747952.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-01A TCGA-BH-A0DV-01A-21D-A12N-01 5b44486e-95e0-4505-9c39-bbd1515f155b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E01_747952.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-01A TCGA-BH-A0DV-01A-21D-A12N-01 5b44486e-95e0-4505-9c39-bbd1515f155b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E01_747952.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-01A TCGA-BH-A0DV-01A-21D-A12N-01 5b44486e-95e0-4505-9c39-bbd1515f155b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E01_747952.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-01A TCGA-BH-A0DV-01A-21D-A12N-01 5b44486e-95e0-4505-9c39-bbd1515f155b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E01_747952.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-01A TCGA-BH-A0DV-01A-21D-A12N-01 5b44486e-95e0-4505-9c39-bbd1515f155b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E01_747952.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-01A TCGA-BH-A0DV-01A-21D-A12Q-09 24ee6b1d-3594-4d12-91b3-8ad1b3c98f28 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-01A TCGA-BH-A0DV-01A-21D-A12Q-09 24ee6b1d-3594-4d12-91b3-8ad1b3c98f28 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-01A TCGA-BH-A0DV-01A-21D-A12R-05 a7aded6b-c72f-42c5-a7eb-30df0ae06b74 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-01A TCGA-BH-A0DV-01A-21D-A12R-05 a7aded6b-c72f-42c5-a7eb-30df0ae06b74 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324072_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-01A TCGA-BH-A0DV-01A-21D-A12R-05 a7aded6b-c72f-42c5-a7eb-30df0ae06b74 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324072_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-01A TCGA-BH-A0DV-01A-21D-A12R-05 a7aded6b-c72f-42c5-a7eb-30df0ae06b74 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-BH-A0DV-01A-21D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-01A TCGA-BH-A0DV-01A-21D-A12R-05 a7aded6b-c72f-42c5-a7eb-30df0ae06b74 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-BH-A0DV-01A-21D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-01A TCGA-BH-A0DV-01A-21R-A12O-13 363474fe-46f3-46f1-8450-cfeed3bd9b7b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-01A TCGA-BH-A0DV-01A-21R-A12O-13 363474fe-46f3-46f1-8450-cfeed3bd9b7b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DV-01A-21R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-01A TCGA-BH-A0DV-01A-21R-A12O-13 363474fe-46f3-46f1-8450-cfeed3bd9b7b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DV-01A-21R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-01A TCGA-BH-A0DV-01A-21R-A12P-07 0d029d04-13cd-4870-a9e3-9d2e65c9b0b7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-01A TCGA-BH-A0DV-01A-21R-A12P-07 0d029d04-13cd-4870-a9e3-9d2e65c9b0b7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407872.TCGA-BH-A0DV-01A-21R-A12P-07.110725_UNC11-SN627_0129_BC040FABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-01A TCGA-BH-A0DV-01A-21R-A12P-07 0d029d04-13cd-4870-a9e3-9d2e65c9b0b7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407943.TCGA-BH-A0DV-01A-21R-A12P-07.110725_UNC11-SN627_0129_BC040FABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-01A TCGA-BH-A0DV-01A-21R-A12P-07 0d029d04-13cd-4870-a9e3-9d2e65c9b0b7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408102.TCGA-BH-A0DV-01A-21R-A12P-07.110725_UNC11-SN627_0129_BC040FABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-01A TCGA-BH-A0DV-01A-21W-A14O-09 e145e009-779d-4f56-914f-c85960ab4d6d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22D-A12M-02 dc766c1e-4a6c-4e15-9ec6-d97430964b05 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22D-A12N-01 8b28f892-6bbf-4bed-a8f3-64f848c882f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22D-A12N-01 8b28f892-6bbf-4bed-a8f3-64f848c882f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B09_748032.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22D-A12N-01 8b28f892-6bbf-4bed-a8f3-64f848c882f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B09_748032.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22D-A12N-01 8b28f892-6bbf-4bed-a8f3-64f848c882f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B09_748032.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22D-A12N-01 8b28f892-6bbf-4bed-a8f3-64f848c882f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B09_748032.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22D-A12N-01 8b28f892-6bbf-4bed-a8f3-64f848c882f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B09_748032.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22D-A12N-01 8b28f892-6bbf-4bed-a8f3-64f848c882f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B09_748032.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22D-A12N-01 8b28f892-6bbf-4bed-a8f3-64f848c882f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B09_748032.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22D-A12N-01 8b28f892-6bbf-4bed-a8f3-64f848c882f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B09_748032.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22D-A12Q-09 6d183062-662c-4ecb-9a40-01da78c6e733 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22D-A12Q-09 6d183062-662c-4ecb-9a40-01da78c6e733 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22D-A12R-05 42acde4d-ed1b-485d-82ec-53190420882d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22D-A12R-05 42acde4d-ed1b-485d-82ec-53190420882d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324070_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22D-A12R-05 42acde4d-ed1b-485d-82ec-53190420882d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324070_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22D-A12R-05 42acde4d-ed1b-485d-82ec-53190420882d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-BH-A0DV-11A-22D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22D-A12R-05 42acde4d-ed1b-485d-82ec-53190420882d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-BH-A0DV-11A-22D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22R-A12O-13 d766302b-419b-45c7-8a8c-10f9475e9c8b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22R-A12O-13 d766302b-419b-45c7-8a8c-10f9475e9c8b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DV-11A-22R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22R-A12O-13 d766302b-419b-45c7-8a8c-10f9475e9c8b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DV-11A-22R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22R-A12P-07 09f570eb-a751-41db-9511-300be228f24e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22R-A12P-07 09f570eb-a751-41db-9511-300be228f24e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013064_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22R-A12P-07 09f570eb-a751-41db-9511-300be228f24e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013064_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22R-A12P-07 09f570eb-a751-41db-9511-300be228f24e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013064_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22R-A12P-07 09f570eb-a751-41db-9511-300be228f24e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451889.TCGA-BH-A0DV-11A-22R-A12P-07.110801_UNC10-SN254_0250_AC01YCABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22R-A12P-07 09f570eb-a751-41db-9511-300be228f24e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451891.TCGA-BH-A0DV-11A-22R-A12P-07.110801_UNC10-SN254_0250_AC01YCABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22R-A12P-07 09f570eb-a751-41db-9511-300be228f24e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451906.TCGA-BH-A0DV-11A-22R-A12P-07.110801_UNC10-SN254_0250_AC01YCABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DV TCGA-BH-A0DV-11A TCGA-BH-A0DV-11A-22W-A14O-09 6761dfb5-af27-488f-a15f-9814bc0012f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11D-A10X-02 f2115c72-cc7d-480b-8908-8cccdf7a2202 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11D-A10Y-09 bca403d9-48ff-4534-ba33-94b8fb9fee0f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11D-A10Y-09 bca403d9-48ff-4534-ba33-94b8fb9fee0f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11D-A111-01 bb1546a4-5d30-48af-ae20-5955db13fadf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11D-A111-01 bb1546a4-5d30-48af-ae20-5955db13fadf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H10_735054.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11D-A111-01 bb1546a4-5d30-48af-ae20-5955db13fadf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H10_735054.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11D-A111-01 bb1546a4-5d30-48af-ae20-5955db13fadf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H10_735054.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11D-A111-01 bb1546a4-5d30-48af-ae20-5955db13fadf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H10_735054.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11D-A111-01 bb1546a4-5d30-48af-ae20-5955db13fadf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H10_735054.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11D-A111-01 bb1546a4-5d30-48af-ae20-5955db13fadf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H10_735054.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11D-A111-01 bb1546a4-5d30-48af-ae20-5955db13fadf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H10_735054.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11D-A111-01 bb1546a4-5d30-48af-ae20-5955db13fadf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_H10_735054.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11D-A112-05 d149ff50-f677-462e-ac03-99bea76734ac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11D-A112-05 d149ff50-f677-462e-ac03-99bea76734ac DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-BH-A0DX-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11D-A112-05 d149ff50-f677-462e-ac03-99bea76734ac DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-BH-A0DX-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11D-A112-05 d149ff50-f677-462e-ac03-99bea76734ac DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-BH-A0DX-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11R-A114-13 583f1b8e-73e1-4987-bbe8-4c7647794b3f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11R-A114-13 583f1b8e-73e1-4987-bbe8-4c7647794b3f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DX-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11R-A114-13 583f1b8e-73e1-4987-bbe8-4c7647794b3f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0DX-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11R-A115-07 c791026a-9fda-47b4-86fd-9b5933325326 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11R-A115-07 c791026a-9fda-47b4-86fd-9b5933325326 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012772_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11R-A115-07 c791026a-9fda-47b4-86fd-9b5933325326 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012772_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11R-A115-07 c791026a-9fda-47b4-86fd-9b5933325326 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012772_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11R-A115-07 c791026a-9fda-47b4-86fd-9b5933325326 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_380699.TCGA-BH-A0DX-01A-11R-A115-07.110512_UNC9-SN296_0180_AC036NABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11R-A115-07 c791026a-9fda-47b4-86fd-9b5933325326 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_380706.TCGA-BH-A0DX-01A-11R-A115-07.110512_UNC9-SN296_0180_AC036NABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11R-A115-07 c791026a-9fda-47b4-86fd-9b5933325326 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_380773.TCGA-BH-A0DX-01A-11R-A115-07.110512_UNC9-SN296_0180_AC036NABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-01A TCGA-BH-A0DX-01A-11W-A12T-09 d2a5856c-c5d5-44b3-a83c-6758c91d6d02 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-10A TCGA-BH-A0DX-10A-02D-A10Z-02 07f9b01a-ec2e-4779-aa25-80ec5d5d2dee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-10A TCGA-BH-A0DX-10A-02D-A110-09 edc2ac11-3828-41d0-abf8-976ea7c5b348 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-10A TCGA-BH-A0DX-10A-02D-A110-09 edc2ac11-3828-41d0-abf8-976ea7c5b348 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-10A TCGA-BH-A0DX-10A-02D-A113-01 bf43a122-09fb-4b27-a715-d2464c50ebcb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-10A TCGA-BH-A0DX-10A-02D-A113-01 bf43a122-09fb-4b27-a715-d2464c50ebcb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E12_735044.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0DX TCGA-BH-A0DX-10A TCGA-BH-A0DX-10A-02D-A113-01 bf43a122-09fb-4b27-a715-d2464c50ebcb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E12_735044.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-10A TCGA-BH-A0DX-10A-02D-A113-01 bf43a122-09fb-4b27-a715-d2464c50ebcb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E12_735044.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-10A TCGA-BH-A0DX-10A-02D-A113-01 bf43a122-09fb-4b27-a715-d2464c50ebcb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E12_735044.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-10A TCGA-BH-A0DX-10A-02D-A113-01 bf43a122-09fb-4b27-a715-d2464c50ebcb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E12_735044.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-10A TCGA-BH-A0DX-10A-02D-A113-01 bf43a122-09fb-4b27-a715-d2464c50ebcb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E12_735044.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-10A TCGA-BH-A0DX-10A-02D-A113-01 bf43a122-09fb-4b27-a715-d2464c50ebcb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E12_735044.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-10A TCGA-BH-A0DX-10A-02D-A113-01 bf43a122-09fb-4b27-a715-d2464c50ebcb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E12_735044.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0DX TCGA-BH-A0DX-10A TCGA-BH-A0DX-10A-02W-A12U-09 6dbf1d4d-7b41-4d91-bf28-94133a95c6cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11D-A00Y-05 1b949d27-33c6-40ed-a9f0-4b6b7a94c452 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11D-A00Y-05 1b949d27-33c6-40ed-a9f0-4b6b7a94c452 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-1.TCGA-BH-A0DZ-01A-11D-A00Y-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.1.0.0 47 21-SEP-10 04.57.59.359000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11D-A00Y-05 1b949d27-33c6-40ed-a9f0-4b6b7a94c452 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-2.TCGA-BH-A0DZ-01A-11D-A00Y-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.1.0.0 47 21-SEP-10 04.59.12.639000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11D-A00Y-05 1b949d27-33c6-40ed-a9f0-4b6b7a94c452 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0/jhu-usc.edu_BRCA.HumanMethylation27.1.lvl-3.TCGA-BH-A0DZ-01A-11D-A00Y-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.1.0.0 47 21-SEP-10 04.42.14.464000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11D-A011-01 b17d5670-c08a-4863-9ceb-3af0ee4df007 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11D-A011-01 b17d5670-c08a-4863-9ceb-3af0ee4df007 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G07_628582.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11D-A011-01 b17d5670-c08a-4863-9ceb-3af0ee4df007 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G07_628582.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11D-A011-01 b17d5670-c08a-4863-9ceb-3af0ee4df007 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G07_628582.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11D-A011-01 b17d5670-c08a-4863-9ceb-3af0ee4df007 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G07_628582.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11D-A011-01 b17d5670-c08a-4863-9ceb-3af0ee4df007 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G07_628582.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11D-A011-01 b17d5670-c08a-4863-9ceb-3af0ee4df007 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G07_628582.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11D-A011-01 b17d5670-c08a-4863-9ceb-3af0ee4df007 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G07_628582.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11D-A011-01 b17d5670-c08a-4863-9ceb-3af0ee4df007 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_G07_628582.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11D-A015-09 9aef2a72-0b7a-44d4-a61d-2f213e13db15 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11D-A016-08 6ffe6cb0-2592-43e2-99f2-e7a6dc10cd88 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11D-A068-02 ae6db639-5a1a-4c5d-854a-5339281ac67d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11R-A00Z-07 4543cecd-6333-473b-b5ce-96d33ab47706 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11R-A00Z-07 4543cecd-6333-473b-b5ce-96d33ab47706 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976011824_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 47 09-SEP-10 10.16.55.025000000 AM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11R-A00Z-07 4543cecd-6333-473b-b5ce-96d33ab47706 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976011824_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 47 09-SEP-10 10.15.34.736000000 AM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11R-A00Z-07 4543cecd-6333-473b-b5ce-96d33ab47706 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976011824_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 47 09-SEP-10 10.16.19.659000000 AM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11R-A010-13 f5f2da85-610b-4a4f-b196-fc8721fa305b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11R-A010-13 f5f2da85-610b-4a4f-b196-fc8721fa305b miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0DZ-01A-11R-A010-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11R-A010-13 f5f2da85-610b-4a4f-b196-fc8721fa305b miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0DZ-01A-11R-A010-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11W-A019-09 d6418b7f-96b4-424a-8737-d382ece37afe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11W-A019-09 d6418b7f-96b4-424a-8737-d382ece37afe Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11W-A020-08 349e5d9e-50a2-459b-b09f-bd2f009c0882 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11X-A023-09 ad355be8-55d5-4615-8cf4-5e49320608ad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-01A TCGA-BH-A0DZ-01A-11X-A024-08 95cd35aa-dd64-43db-ba99-843b05210291 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-10A TCGA-BH-A0DZ-10A-01D-A012-01 21e209f7-7c18-407c-b354-e0158ff13891 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-10A TCGA-BH-A0DZ-10A-01D-A012-01 21e209f7-7c18-407c-b354-e0158ff13891 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A12_628410.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-BH-A0DZ TCGA-BH-A0DZ-10A TCGA-BH-A0DZ-10A-01D-A012-01 21e209f7-7c18-407c-b354-e0158ff13891 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A12_628410.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-10A TCGA-BH-A0DZ-10A-01D-A012-01 21e209f7-7c18-407c-b354-e0158ff13891 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A12_628410.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-10A TCGA-BH-A0DZ-10A-01D-A012-01 21e209f7-7c18-407c-b354-e0158ff13891 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A12_628410.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-10A TCGA-BH-A0DZ-10A-01D-A012-01 21e209f7-7c18-407c-b354-e0158ff13891 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A12_628410.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-10A TCGA-BH-A0DZ-10A-01D-A012-01 21e209f7-7c18-407c-b354-e0158ff13891 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A12_628410.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-10A TCGA-BH-A0DZ-10A-01D-A012-01 21e209f7-7c18-407c-b354-e0158ff13891 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A12_628410.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-10A TCGA-BH-A0DZ-10A-01D-A012-01 21e209f7-7c18-407c-b354-e0158ff13891 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/HAULS_p_TCGAb47_SNP_2N_GenomeWideSNP_6_A12_628410.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-10A TCGA-BH-A0DZ-10A-01D-A017-09 89e71828-4934-48f0-bcf9-8b2a6bdf783b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-10A TCGA-BH-A0DZ-10A-01D-A018-08 f08440e3-1691-4771-92b3-5cc707219ebd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-10A TCGA-BH-A0DZ-10A-01D-A069-02 9cde4952-ed8f-474c-9f66-d0ca39dcfb90 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-10A TCGA-BH-A0DZ-10A-01W-A021-09 dfd32478-8fa8-42a1-b5f7-329c02aa8f87 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-10A TCGA-BH-A0DZ-10A-01W-A021-09 dfd32478-8fa8-42a1-b5f7-329c02aa8f87 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-10A TCGA-BH-A0DZ-10A-01W-A022-08 5ffd1eef-8cf5-47ec-8bfd-05f1899e242c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-10A TCGA-BH-A0DZ-10A-01X-A025-09 f2d7a86a-aefe-47a7-b040-4fb38e370b97 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-10A TCGA-BH-A0DZ-10A-01X-A026-08 ce92123f-1a25-4f1d-8e5b-dc5cc8d8d477 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22D-A091-02 f7d96e96-10c0-4c02-ad54-ea6627393c08 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22D-A092-01 4d23b08e-3f7f-4122-aded-4bf12ec9b841 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22D-A092-01 4d23b08e-3f7f-4122-aded-4bf12ec9b841 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_E09_729616.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.47.1008.0 47 07-DEC-11 11.28.28.705000000 AM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22D-A092-01 4d23b08e-3f7f-4122-aded-4bf12ec9b841 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_E09_729616.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22D-A092-01 4d23b08e-3f7f-4122-aded-4bf12ec9b841 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_E09_729616.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22D-A092-01 4d23b08e-3f7f-4122-aded-4bf12ec9b841 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_E09_729616.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22D-A092-01 4d23b08e-3f7f-4122-aded-4bf12ec9b841 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_E09_729616.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22D-A092-01 4d23b08e-3f7f-4122-aded-4bf12ec9b841 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_E09_729616.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22D-A092-01 4d23b08e-3f7f-4122-aded-4bf12ec9b841 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_E09_729616.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.47.1008.0 47 07-DEC-11 12.25.57.175000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22D-A092-01 4d23b08e-3f7f-4122-aded-4bf12ec9b841 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_E09_729616.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.47.1008.0 47 07-DEC-11 01.00.06.527000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22D-A093-05 356aa01e-0105-4c24-910f-7f73e5b748eb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22D-A100-09 b315dace-37d7-4038-981d-6e5817e4cacf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22D-A10Q-05 205f8070-33ea-4f61-a743-8aaf735a0b30 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22D-A10Q-05 205f8070-33ea-4f61-a743-8aaf735a0b30 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0/6005486011_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0 47 07-NOV-11 04.04.17.697000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22D-A10Q-05 205f8070-33ea-4f61-a743-8aaf735a0b30 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0/6005486011_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.1.1.0 47 07-NOV-11 04.04.17.697000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22D-A10Q-05 205f8070-33ea-4f61-a743-8aaf735a0b30 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.1.1.0/jhu-usc.edu_BRCA.HumanMethylation450.1.lvl-2.TCGA-BH-A0DZ-11A-22D-A10Q-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.1.1.0 47 07-NOV-11 04.38.19.253000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22D-A10Q-05 205f8070-33ea-4f61-a743-8aaf735a0b30 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.1.1.0/jhu-usc.edu_BRCA.HumanMethylation450.1.lvl-3.TCGA-BH-A0DZ-11A-22D-A10Q-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.1.1.0 47 07-NOV-11 05.34.09.862000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22R-A089-07 f59f9272-412f-4884-9874-a6ff59ab1740 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22R-A089-07 f59f9272-412f-4884-9874-a6ff59ab1740 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012662_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 47 02-NOV-10 12.30.07.283000000 AM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22R-A089-07 f59f9272-412f-4884-9874-a6ff59ab1740 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012662_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 47 02-NOV-10 12.25.38.097000000 AM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22R-A089-07 f59f9272-412f-4884-9874-a6ff59ab1740 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012662_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 47 02-NOV-10 12.26.20.805000000 AM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22R-A090-13 952241f0-5bc0-4034-a072-ab35f21a3756 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22R-A090-13 952241f0-5bc0-4034-a072-ab35f21a3756 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0DZ-11A-22R-A090-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22R-A090-13 952241f0-5bc0-4034-a072-ab35f21a3756 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0DZ-11A-22R-A090-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 47 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22W-A100-09 4144f1ac-bfb3-48f2-bb03-1e82640b5a1f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22W-A100-09 4144f1ac-bfb3-48f2-bb03-1e82640b5a1f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 47 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0DZ TCGA-BH-A0DZ-11A TCGA-BH-A0DZ-11A-22X-A100-09 4d10b817-73db-4d71-8082-c9fb14466694 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.47.29.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0DZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.47.29.0 47 12-JAN-12 08.45.09.313000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11D-A058-05 78c69481-2c9a-4877-b3c0-961fbb8cffd8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11D-A059-01 d0d4963f-0739-4d50-a631-119847fc08d7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11D-A059-01 d0d4963f-0739-4d50-a631-119847fc08d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F07_697060.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11D-A059-01 d0d4963f-0739-4d50-a631-119847fc08d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F07_697060.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11D-A059-01 d0d4963f-0739-4d50-a631-119847fc08d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F07_697060.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11D-A059-01 d0d4963f-0739-4d50-a631-119847fc08d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F07_697060.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11D-A059-01 d0d4963f-0739-4d50-a631-119847fc08d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F07_697060.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11D-A059-01 d0d4963f-0739-4d50-a631-119847fc08d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F07_697060.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11D-A059-01 d0d4963f-0739-4d50-a631-119847fc08d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F07_697060.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11D-A059-01 d0d4963f-0739-4d50-a631-119847fc08d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F07_697060.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11D-A060-02 735fca04-52d3-4e70-bcab-4b99ff632f64 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11D-A074-08 b2acc484-75ea-4be7-a5a1-ec5364526b46 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11D-A075-09 b9cd3833-812a-4c1a-a6ba-4e39ad5623f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11D-A10P-05 3bcdc9d8-8523-4d68-ac88-2e11779beeb8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11D-A10P-05 3bcdc9d8-8523-4d68-ac88-2e11779beeb8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486019_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11D-A10P-05 3bcdc9d8-8523-4d68-ac88-2e11779beeb8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486019_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11D-A10P-05 3bcdc9d8-8523-4d68-ac88-2e11779beeb8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0E0-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11D-A10P-05 3bcdc9d8-8523-4d68-ac88-2e11779beeb8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0E0-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11D-A128-09 e8392f20-c9e3-4649-b64f-5b266c393a76 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11R-A056-07 fac9101c-a974-4415-9eac-d2d433d02b13 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11R-A056-07 fac9101c-a974-4415-9eac-d2d433d02b13 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012207_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11R-A056-07 fac9101c-a974-4415-9eac-d2d433d02b13 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012207_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11R-A056-07 fac9101c-a974-4415-9eac-d2d433d02b13 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012207_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11R-A056-07 fac9101c-a974-4415-9eac-d2d433d02b13 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443121.TCGA-BH-A0E0-01A-11R-A056-07.110325_UNC11-SN627_0070_AB02DVABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11R-A056-07 fac9101c-a974-4415-9eac-d2d433d02b13 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443128.TCGA-BH-A0E0-01A-11R-A056-07.110325_UNC11-SN627_0070_AB02DVABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11R-A056-07 fac9101c-a974-4415-9eac-d2d433d02b13 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443193.TCGA-BH-A0E0-01A-11R-A056-07.110325_UNC11-SN627_0070_AB02DVABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11R-A057-13 0f89284c-3bed-4be7-b6fc-2fc628da1f91 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11R-A057-13 0f89284c-3bed-4be7-b6fc-2fc628da1f91 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0E0-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11R-A057-13 0f89284c-3bed-4be7-b6fc-2fc628da1f91 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0E0-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11W-A070-08 496ac267-1692-49d5-9a56-f695cb46a294 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11W-A071-09 f4a0943c-0124-4474-b7cf-2d87164056db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11W-A071-09 f4a0943c-0124-4474-b7cf-2d87164056db Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11X-A072-08 5388d107-0c94-4b47-8e8a-f93e2e9e2308 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-01A TCGA-BH-A0E0-01A-11X-A073-09 abed47b0-fa07-456a-9f76-dde91e4d159a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-10A TCGA-BH-A0E0-10A-01D-A059-01 aef59bff-af0b-44e5-905e-c061ebfba83f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-10A TCGA-BH-A0E0-10A-01D-A059-01 aef59bff-af0b-44e5-905e-c061ebfba83f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D02_697126.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0E0 TCGA-BH-A0E0-10A TCGA-BH-A0E0-10A-01D-A059-01 aef59bff-af0b-44e5-905e-c061ebfba83f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D02_697126.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-10A TCGA-BH-A0E0-10A-01D-A059-01 aef59bff-af0b-44e5-905e-c061ebfba83f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D02_697126.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-10A TCGA-BH-A0E0-10A-01D-A059-01 aef59bff-af0b-44e5-905e-c061ebfba83f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D02_697126.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-10A TCGA-BH-A0E0-10A-01D-A059-01 aef59bff-af0b-44e5-905e-c061ebfba83f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D02_697126.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-10A TCGA-BH-A0E0-10A-01D-A059-01 aef59bff-af0b-44e5-905e-c061ebfba83f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D02_697126.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-10A TCGA-BH-A0E0-10A-01D-A059-01 aef59bff-af0b-44e5-905e-c061ebfba83f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D02_697126.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-10A TCGA-BH-A0E0-10A-01D-A059-01 aef59bff-af0b-44e5-905e-c061ebfba83f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D02_697126.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-10A TCGA-BH-A0E0-10A-01D-A060-02 15c59312-b29d-4a33-bc4d-20c54c8a75ac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-10A TCGA-BH-A0E0-10A-01D-A074-08 d121fd76-e9fa-495a-813c-146bf29d4fff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-10A TCGA-BH-A0E0-10A-01D-A075-09 43ac2a16-9b32-43ed-9765-af9e4d7ad59a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-10A TCGA-BH-A0E0-10A-01D-A128-09 3448b251-9ee2-413b-8a08-f0160cedeba0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-10A TCGA-BH-A0E0-10A-01W-A070-08 551ee42f-7697-41a6-b4fe-513f7fbdb565 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-10A TCGA-BH-A0E0-10A-01W-A071-09 bf8ee52e-4c02-4228-a357-0617a13a73bf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-10A TCGA-BH-A0E0-10A-01W-A071-09 bf8ee52e-4c02-4228-a357-0617a13a73bf Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-10A TCGA-BH-A0E0-10A-01X-A072-08 d4aa1c02-b3ba-4054-8977-d460e9cca138 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-10A TCGA-BH-A0E0-10A-01X-A073-09 030a5636-ea5f-4ba5-b197-7c6c2228d0bc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13D-A092-01 83ebad81-f366-45f2-97b5-2ef0f05a4d19 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13D-A092-01 83ebad81-f366-45f2-97b5-2ef0f05a4d19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F11_729664.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13D-A092-01 83ebad81-f366-45f2-97b5-2ef0f05a4d19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F11_729664.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13D-A092-01 83ebad81-f366-45f2-97b5-2ef0f05a4d19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F11_729664.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13D-A092-01 83ebad81-f366-45f2-97b5-2ef0f05a4d19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F11_729664.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13D-A092-01 83ebad81-f366-45f2-97b5-2ef0f05a4d19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F11_729664.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13D-A092-01 83ebad81-f366-45f2-97b5-2ef0f05a4d19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F11_729664.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13D-A092-01 83ebad81-f366-45f2-97b5-2ef0f05a4d19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F11_729664.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13D-A092-01 83ebad81-f366-45f2-97b5-2ef0f05a4d19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_F11_729664.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13D-A093-05 c904042d-6d5e-4459-8525-82fbcfebf653 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13D-A10E-09 a6565382-6aa4-4f65-aefe-b96d92cba418 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13D-A10Q-05 63ff0e42-0429-4e28-bff3-4446d1d18f29 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13D-A10Q-05 63ff0e42-0429-4e28-bff3-4446d1d18f29 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486011_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13D-A10Q-05 63ff0e42-0429-4e28-bff3-4446d1d18f29 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486011_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13D-A10Q-05 63ff0e42-0429-4e28-bff3-4446d1d18f29 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0E0-11A-13D-A10Q-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13D-A10Q-05 63ff0e42-0429-4e28-bff3-4446d1d18f29 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0E0-11A-13D-A10Q-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13D-A128-09 8a1636aa-6b9b-42cb-8f0d-c8529adb2c63 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13R-A089-07 5cc82d2c-f960-40c3-9b37-59e087563dc1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13R-A089-07 5cc82d2c-f960-40c3-9b37-59e087563dc1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012679_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 61 02-NOV-10 12.30.07.283000000 AM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13R-A089-07 5cc82d2c-f960-40c3-9b37-59e087563dc1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012679_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 61 02-NOV-10 12.25.38.097000000 AM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13R-A089-07 5cc82d2c-f960-40c3-9b37-59e087563dc1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012679_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 61 02-NOV-10 12.26.20.805000000 AM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13R-A089-07 5cc82d2c-f960-40c3-9b37-59e087563dc1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445928.TCGA-BH-A0E0-11A-13R-A089-07.110824_UNC13-SN749_0101_BB0AHBABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13R-A089-07 5cc82d2c-f960-40c3-9b37-59e087563dc1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445956.TCGA-BH-A0E0-11A-13R-A089-07.110824_UNC13-SN749_0101_BB0AHBABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13R-A089-07 5cc82d2c-f960-40c3-9b37-59e087563dc1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445972.TCGA-BH-A0E0-11A-13R-A089-07.110824_UNC13-SN749_0101_BB0AHBABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13W-A10F-09 f587a6a2-4476-4aa2-9a3d-eb131df46c0d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13W-A10F-09 f587a6a2-4476-4aa2-9a3d-eb131df46c0d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0E0 TCGA-BH-A0E0-11A TCGA-BH-A0E0-11A-13X-A10F-09 f0514ba7-80f4-4ba3-af64-996a0918b2ff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11D-A058-05 d4c75d62-f3c3-4cc0-8431-3ac66221ea4d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11D-A059-01 a2a1f3e8-7484-4105-92b6-6a7d0b2d9ace Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11D-A059-01 a2a1f3e8-7484-4105-92b6-6a7d0b2d9ace SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D04_697026.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11D-A059-01 a2a1f3e8-7484-4105-92b6-6a7d0b2d9ace SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D04_697026.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11D-A059-01 a2a1f3e8-7484-4105-92b6-6a7d0b2d9ace SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D04_697026.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11D-A059-01 a2a1f3e8-7484-4105-92b6-6a7d0b2d9ace SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D04_697026.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11D-A059-01 a2a1f3e8-7484-4105-92b6-6a7d0b2d9ace SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D04_697026.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11D-A059-01 a2a1f3e8-7484-4105-92b6-6a7d0b2d9ace SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D04_697026.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11D-A059-01 a2a1f3e8-7484-4105-92b6-6a7d0b2d9ace SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D04_697026.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11D-A059-01 a2a1f3e8-7484-4105-92b6-6a7d0b2d9ace SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D04_697026.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11D-A060-02 f049d232-0ebb-4432-9cff-351c54141392 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11D-A074-08 e0a84605-b496-4b99-b469-1f694224b3a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11D-A075-09 ef5b82f7-54d8-4746-b632-c44cc13c0d73 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11D-A10P-05 826fdf87-2406-425a-85de-dc7f4b2eebb0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11D-A10P-05 826fdf87-2406-425a-85de-dc7f4b2eebb0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486014_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11D-A10P-05 826fdf87-2406-425a-85de-dc7f4b2eebb0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486014_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11D-A10P-05 826fdf87-2406-425a-85de-dc7f4b2eebb0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0E1-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11D-A10P-05 826fdf87-2406-425a-85de-dc7f4b2eebb0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0E1-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11R-A056-07 9bf836ee-036e-40f2-88fb-cf903a40d9f5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11R-A056-07 9bf836ee-036e-40f2-88fb-cf903a40d9f5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012480_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11R-A056-07 9bf836ee-036e-40f2-88fb-cf903a40d9f5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012480_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11R-A056-07 9bf836ee-036e-40f2-88fb-cf903a40d9f5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012480_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11R-A056-07 9bf836ee-036e-40f2-88fb-cf903a40d9f5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443133.TCGA-BH-A0E1-01A-11R-A056-07.110325_UNC11-SN627_0070_AB02DVABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11R-A056-07 9bf836ee-036e-40f2-88fb-cf903a40d9f5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443135.TCGA-BH-A0E1-01A-11R-A056-07.110325_UNC11-SN627_0070_AB02DVABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11R-A056-07 9bf836ee-036e-40f2-88fb-cf903a40d9f5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443271.TCGA-BH-A0E1-01A-11R-A056-07.110325_UNC11-SN627_0070_AB02DVABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11R-A057-13 319a85fd-2103-454a-bd87-9ab016dd07cd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11R-A057-13 319a85fd-2103-454a-bd87-9ab016dd07cd miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0E1-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11R-A057-13 319a85fd-2103-454a-bd87-9ab016dd07cd miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0E1-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11W-A070-08 47bcdfb0-3923-4041-a642-7ebf608a0ec1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11W-A071-09 48706085-54be-4ea7-922e-46757a0b2979 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11W-A071-09 48706085-54be-4ea7-922e-46757a0b2979 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11X-A072-08 7dabfe35-a742-4541-a15a-a558ea56fddd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-01A TCGA-BH-A0E1-01A-11X-A073-09 00ecfe21-9fc6-42b7-ba86-c5bd81df0c09 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-10A TCGA-BH-A0E1-10A-01D-A059-01 f9691d84-9bca-4a7a-b4f6-d692bdc7d267 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-10A TCGA-BH-A0E1-10A-01D-A059-01 f9691d84-9bca-4a7a-b4f6-d692bdc7d267 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D08_697018.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0E1 TCGA-BH-A0E1-10A TCGA-BH-A0E1-10A-01D-A059-01 f9691d84-9bca-4a7a-b4f6-d692bdc7d267 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D08_697018.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-10A TCGA-BH-A0E1-10A-01D-A059-01 f9691d84-9bca-4a7a-b4f6-d692bdc7d267 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D08_697018.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-10A TCGA-BH-A0E1-10A-01D-A059-01 f9691d84-9bca-4a7a-b4f6-d692bdc7d267 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D08_697018.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-10A TCGA-BH-A0E1-10A-01D-A059-01 f9691d84-9bca-4a7a-b4f6-d692bdc7d267 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D08_697018.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-10A TCGA-BH-A0E1-10A-01D-A059-01 f9691d84-9bca-4a7a-b4f6-d692bdc7d267 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D08_697018.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-10A TCGA-BH-A0E1-10A-01D-A059-01 f9691d84-9bca-4a7a-b4f6-d692bdc7d267 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D08_697018.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-10A TCGA-BH-A0E1-10A-01D-A059-01 f9691d84-9bca-4a7a-b4f6-d692bdc7d267 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D08_697018.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-10A TCGA-BH-A0E1-10A-01D-A060-02 0743a7b3-763b-42a2-80ca-4dc0298e3487 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-10A TCGA-BH-A0E1-10A-01D-A074-08 56b97c5e-7343-4a5e-94af-33c3310b18a8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-10A TCGA-BH-A0E1-10A-01D-A075-09 60981d1d-d7fd-440b-bac3-892b0224430e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-10A TCGA-BH-A0E1-10A-01W-A070-08 e8ba8e1b-bd2c-4742-be4c-983cd25d34ac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-10A TCGA-BH-A0E1-10A-01W-A071-09 e1bc14b6-02fc-4f82-89c6-c08d7482449f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-10A TCGA-BH-A0E1-10A-01W-A071-09 e1bc14b6-02fc-4f82-89c6-c08d7482449f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-10A TCGA-BH-A0E1-10A-01X-A072-08 f0620882-8bf5-497f-931d-d99d2da34580 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-10A TCGA-BH-A0E1-10A-01X-A073-09 5d57faa0-aa61-4944-bfdf-f14fab73c9b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13D-A091-02 bff12310-d51f-44e6-ab95-58adff234bbf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13D-A092-01 f894d975-86aa-4a1a-b7ed-a8cc5bc0cd3d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13D-A092-01 f894d975-86aa-4a1a-b7ed-a8cc5bc0cd3d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_E10_729686.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13D-A092-01 f894d975-86aa-4a1a-b7ed-a8cc5bc0cd3d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_E10_729686.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13D-A092-01 f894d975-86aa-4a1a-b7ed-a8cc5bc0cd3d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_E10_729686.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13D-A092-01 f894d975-86aa-4a1a-b7ed-a8cc5bc0cd3d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_E10_729686.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13D-A092-01 f894d975-86aa-4a1a-b7ed-a8cc5bc0cd3d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_E10_729686.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13D-A092-01 f894d975-86aa-4a1a-b7ed-a8cc5bc0cd3d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_E10_729686.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13D-A092-01 f894d975-86aa-4a1a-b7ed-a8cc5bc0cd3d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_E10_729686.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13D-A092-01 f894d975-86aa-4a1a-b7ed-a8cc5bc0cd3d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_E10_729686.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13D-A093-05 e1f066f1-4478-4753-b86f-ae341e3c1ecc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13D-A100-09 4c365f2c-5c07-4cdd-a832-87983f4d8286 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13D-A10Q-05 fd3f4b5e-cdbe-47ba-bf56-4e2d47072823 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13D-A10Q-05 fd3f4b5e-cdbe-47ba-bf56-4e2d47072823 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486011_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13D-A10Q-05 fd3f4b5e-cdbe-47ba-bf56-4e2d47072823 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486011_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13D-A10Q-05 fd3f4b5e-cdbe-47ba-bf56-4e2d47072823 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0E1-11A-13D-A10Q-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13D-A10Q-05 fd3f4b5e-cdbe-47ba-bf56-4e2d47072823 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0E1-11A-13D-A10Q-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13R-A089-07 b6302c6b-2bab-40b1-b835-7f285719fff5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13R-A089-07 b6302c6b-2bab-40b1-b835-7f285719fff5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012675_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 61 02-NOV-10 12.30.07.283000000 AM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13R-A089-07 b6302c6b-2bab-40b1-b835-7f285719fff5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012675_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 61 02-NOV-10 12.25.38.097000000 AM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13R-A089-07 b6302c6b-2bab-40b1-b835-7f285719fff5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012675_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 61 02-NOV-10 12.26.20.805000000 AM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13R-A089-07 b6302c6b-2bab-40b1-b835-7f285719fff5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445830.TCGA-BH-A0E1-11A-13R-A089-07.110824_UNC13-SN749_0101_BB0AHBABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13R-A089-07 b6302c6b-2bab-40b1-b835-7f285719fff5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445832.TCGA-BH-A0E1-11A-13R-A089-07.110824_UNC13-SN749_0101_BB0AHBABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13R-A089-07 b6302c6b-2bab-40b1-b835-7f285719fff5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445844.TCGA-BH-A0E1-11A-13R-A089-07.110824_UNC13-SN749_0101_BB0AHBABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13R-A090-13 b90f3b5e-c044-4f5f-be63-16819115a0ca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13R-A090-13 b90f3b5e-c044-4f5f-be63-16819115a0ca miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0E1-11A-13R-A090-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13R-A090-13 b90f3b5e-c044-4f5f-be63-16819115a0ca miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0E1-11A-13R-A090-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13W-A100-09 11397279-b38a-4ec6-b121-21fda5625386 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13W-A100-09 11397279-b38a-4ec6-b121-21fda5625386 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0E1 TCGA-BH-A0E1-11A TCGA-BH-A0E1-11A-13X-A100-09 e946fd30-8acd-4d25-8436-7f036168025d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11D-A058-05 f1df0b61-9996-4103-8f5e-f013be3f5499 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11D-A059-01 258d006c-a41d-49db-9bb4-e7e9a72eede1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11D-A059-01 258d006c-a41d-49db-9bb4-e7e9a72eede1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D11_697080.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11D-A059-01 258d006c-a41d-49db-9bb4-e7e9a72eede1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D11_697080.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11D-A059-01 258d006c-a41d-49db-9bb4-e7e9a72eede1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D11_697080.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11D-A059-01 258d006c-a41d-49db-9bb4-e7e9a72eede1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D11_697080.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11D-A059-01 258d006c-a41d-49db-9bb4-e7e9a72eede1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D11_697080.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11D-A059-01 258d006c-a41d-49db-9bb4-e7e9a72eede1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D11_697080.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11D-A059-01 258d006c-a41d-49db-9bb4-e7e9a72eede1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D11_697080.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11D-A059-01 258d006c-a41d-49db-9bb4-e7e9a72eede1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D11_697080.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11D-A060-02 0b49fe60-e6d2-401e-b022-7fb3598c2be1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11D-A074-08 f5f590b8-fd53-4c0e-b1d8-fb3dcc5680e2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11D-A075-09 bf44a12c-35f2-42cf-9d6a-f77564d1ac4f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11D-A10P-05 df91e58c-7998-4c1d-898e-2a9014140896 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11D-A10P-05 df91e58c-7998-4c1d-898e-2a9014140896 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486023_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11D-A10P-05 df91e58c-7998-4c1d-898e-2a9014140896 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486023_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11D-A10P-05 df91e58c-7998-4c1d-898e-2a9014140896 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0E2-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11D-A10P-05 df91e58c-7998-4c1d-898e-2a9014140896 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0E2-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11R-A056-07 b605d803-523b-46e6-b656-7d9888d306cc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11R-A056-07 b605d803-523b-46e6-b656-7d9888d306cc Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012486_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11R-A056-07 b605d803-523b-46e6-b656-7d9888d306cc Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012486_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11R-A056-07 b605d803-523b-46e6-b656-7d9888d306cc Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012486_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11R-A056-07 b605d803-523b-46e6-b656-7d9888d306cc RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443065.TCGA-BH-A0E2-01A-11R-A056-07.110325_UNC11-SN627_0070_AB02DVABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11R-A056-07 b605d803-523b-46e6-b656-7d9888d306cc RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443145.TCGA-BH-A0E2-01A-11R-A056-07.110325_UNC11-SN627_0070_AB02DVABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11R-A056-07 b605d803-523b-46e6-b656-7d9888d306cc RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_443187.TCGA-BH-A0E2-01A-11R-A056-07.110325_UNC11-SN627_0070_AB02DVABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11R-A057-13 e00f22af-ff1a-45a6-abca-d9e51c291e0b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11W-A070-08 12784251-0224-4055-8642-3e511ef752f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11W-A071-09 2703ce22-3ffa-4094-b3f1-1f573b5204a9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11W-A071-09 2703ce22-3ffa-4094-b3f1-1f573b5204a9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11X-A072-08 84bbe1e0-78ed-4957-b713-555ef8ed2662 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-01A TCGA-BH-A0E2-01A-11X-A073-09 96eaaa4e-96ed-487e-a3e7-7fab0e0ea0f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-10A TCGA-BH-A0E2-10A-01D-A059-01 ff77f574-5204-45cf-82b7-57dd9f6177e6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-10A TCGA-BH-A0E2-10A-01D-A059-01 ff77f574-5204-45cf-82b7-57dd9f6177e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H12_697028.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0E2 TCGA-BH-A0E2-10A TCGA-BH-A0E2-10A-01D-A059-01 ff77f574-5204-45cf-82b7-57dd9f6177e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H12_697028.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-10A TCGA-BH-A0E2-10A-01D-A059-01 ff77f574-5204-45cf-82b7-57dd9f6177e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H12_697028.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-10A TCGA-BH-A0E2-10A-01D-A059-01 ff77f574-5204-45cf-82b7-57dd9f6177e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H12_697028.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-10A TCGA-BH-A0E2-10A-01D-A059-01 ff77f574-5204-45cf-82b7-57dd9f6177e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H12_697028.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-10A TCGA-BH-A0E2-10A-01D-A059-01 ff77f574-5204-45cf-82b7-57dd9f6177e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H12_697028.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-10A TCGA-BH-A0E2-10A-01D-A059-01 ff77f574-5204-45cf-82b7-57dd9f6177e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H12_697028.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-10A TCGA-BH-A0E2-10A-01D-A059-01 ff77f574-5204-45cf-82b7-57dd9f6177e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H12_697028.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-10A TCGA-BH-A0E2-10A-01D-A060-02 68ac4fa6-b26b-47e0-9b30-27f373a11a9e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-10A TCGA-BH-A0E2-10A-01D-A074-08 978c3095-16fc-4aa2-a6dd-d313f70eac61 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-10A TCGA-BH-A0E2-10A-01D-A075-09 60a2877c-65e8-4f98-8f27-c399e4f91217 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-10A TCGA-BH-A0E2-10A-01W-A070-08 a99217b2-1e0b-46ea-b18a-c794e5d949b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-10A TCGA-BH-A0E2-10A-01W-A071-09 ff7d656e-eef3-42eb-84e8-545536c8aec0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-10A TCGA-BH-A0E2-10A-01W-A071-09 ff7d656e-eef3-42eb-84e8-545536c8aec0 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-10A TCGA-BH-A0E2-10A-01X-A072-08 ed6f07a1-07a8-451b-be8b-f3fe906fa32f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E2 TCGA-BH-A0E2-10A TCGA-BH-A0E2-10A-01X-A073-09 8fb5393f-52b4-4944-9fd7-3e3e9a5fa29c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11D-A032-05 a75aa014-b552-4463-a37e-127e86858983 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11D-A032-05 a75aa014-b552-4463-a37e-127e86858983 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-BH-A0E6-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11D-A032-05 a75aa014-b552-4463-a37e-127e86858983 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-BH-A0E6-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11D-A032-05 a75aa014-b552-4463-a37e-127e86858983 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-BH-A0E6-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11D-A033-02 66acdd8c-235e-49f2-85f7-d66be8cf519c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11D-A036-01 245f6917-4912-4707-9289-d4bc54345b81 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11D-A036-01 245f6917-4912-4707-9289-d4bc54345b81 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A04_667098.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11D-A036-01 245f6917-4912-4707-9289-d4bc54345b81 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A04_667098.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11D-A036-01 245f6917-4912-4707-9289-d4bc54345b81 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A04_667098.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11D-A036-01 245f6917-4912-4707-9289-d4bc54345b81 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A04_667098.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11D-A036-01 245f6917-4912-4707-9289-d4bc54345b81 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A04_667098.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11D-A036-01 245f6917-4912-4707-9289-d4bc54345b81 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A04_667098.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11D-A036-01 245f6917-4912-4707-9289-d4bc54345b81 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A04_667098.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11D-A036-01 245f6917-4912-4707-9289-d4bc54345b81 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A04_667098.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11D-A044-08 8466416c-7e0a-43be-bb6f-274237446891 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11D-A045-09 b82ef02a-7331-4025-8f96-f13f5d657571 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11R-A034-07 6bf094a5-1f62-406c-9b3a-e686bb4a074e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11R-A034-07 6bf094a5-1f62-406c-9b3a-e686bb4a074e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012083_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11R-A034-07 6bf094a5-1f62-406c-9b3a-e686bb4a074e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012083_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11R-A034-07 6bf094a5-1f62-406c-9b3a-e686bb4a074e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012083_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11R-A034-07 6bf094a5-1f62-406c-9b3a-e686bb4a074e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451309.TCGA-BH-A0E6-01A-11R-A034-07.110801_UNC13-SN749_0089_BD0DT6ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11R-A034-07 6bf094a5-1f62-406c-9b3a-e686bb4a074e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451312.TCGA-BH-A0E6-01A-11R-A034-07.110801_UNC13-SN749_0089_BD0DT6ABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11R-A034-07 6bf094a5-1f62-406c-9b3a-e686bb4a074e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451456.TCGA-BH-A0E6-01A-11R-A034-07.110801_UNC13-SN749_0089_BD0DT6ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11R-A035-13 8985b676-79b0-4eb6-9c5c-0b0a442a3ffb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11R-A035-13 8985b676-79b0-4eb6-9c5c-0b0a442a3ffb miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0E6-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11R-A035-13 8985b676-79b0-4eb6-9c5c-0b0a442a3ffb miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0E6-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11W-A050-09 1c55939a-ae58-4ed9-8a6e-01bae8ac12f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11W-A050-09 1c55939a-ae58-4ed9-8a6e-01bae8ac12f7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11W-A051-08 a87d036e-5aba-4edd-8dc7-535a29b9b0cc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11X-A048-08 e0c95992-e0d3-4099-a461-b3f4f774c6ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-01A TCGA-BH-A0E6-01A-11X-A049-09 2b22b70f-ac11-4ebf-a51b-83eadb9e2984 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-10A TCGA-BH-A0E6-10A-01D-A031-02 47a59808-e40c-4038-9c03-548d56f8d180 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-10A TCGA-BH-A0E6-10A-01D-A037-01 17f6a391-7f8d-428d-823d-fa52d9c63bba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-10A TCGA-BH-A0E6-10A-01D-A037-01 17f6a391-7f8d-428d-823d-fa52d9c63bba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F08_667166.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-BH-A0E6 TCGA-BH-A0E6-10A TCGA-BH-A0E6-10A-01D-A037-01 17f6a391-7f8d-428d-823d-fa52d9c63bba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F08_667166.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-10A TCGA-BH-A0E6-10A-01D-A037-01 17f6a391-7f8d-428d-823d-fa52d9c63bba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F08_667166.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-10A TCGA-BH-A0E6-10A-01D-A037-01 17f6a391-7f8d-428d-823d-fa52d9c63bba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F08_667166.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-10A TCGA-BH-A0E6-10A-01D-A037-01 17f6a391-7f8d-428d-823d-fa52d9c63bba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F08_667166.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-10A TCGA-BH-A0E6-10A-01D-A037-01 17f6a391-7f8d-428d-823d-fa52d9c63bba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F08_667166.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-10A TCGA-BH-A0E6-10A-01D-A037-01 17f6a391-7f8d-428d-823d-fa52d9c63bba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F08_667166.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-10A TCGA-BH-A0E6-10A-01D-A037-01 17f6a391-7f8d-428d-823d-fa52d9c63bba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F08_667166.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-10A TCGA-BH-A0E6-10A-01D-A046-08 4051f8ef-1569-44d8-82a2-bdc6fb4b49f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-10A TCGA-BH-A0E6-10A-01D-A047-09 3c9688ee-e5bc-451c-a9f6-b1b841e70131 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-10A TCGA-BH-A0E6-10A-01W-A053-08 974d7d54-24dc-4c1b-bec8-e841eea2af2a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-10A TCGA-BH-A0E6-10A-01W-A055-09 d4833cef-9a84-4e99-a96c-54ba25876fda Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-10A TCGA-BH-A0E6-10A-01W-A055-09 d4833cef-9a84-4e99-a96c-54ba25876fda Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-10A TCGA-BH-A0E6-10A-01X-A052-08 db279955-bcab-4043-b69a-d1450ddcd07d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E6 TCGA-BH-A0E6-10A TCGA-BH-A0E6-10A-01X-A054-09 b98fab86-645f-4cfb-82d3-2a774545bc59 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11D-A032-05 a180a4df-ef7f-4169-91c5-5688a3ee9cca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11D-A032-05 a180a4df-ef7f-4169-91c5-5688a3ee9cca DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-BH-A0E7-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11D-A032-05 a180a4df-ef7f-4169-91c5-5688a3ee9cca DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-BH-A0E7-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11D-A032-05 a180a4df-ef7f-4169-91c5-5688a3ee9cca DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-BH-A0E7-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11D-A033-02 08d8b599-a520-4414-8912-027face2ef31 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11D-A036-01 36334043-4a27-4b60-945a-bef7a9adacbc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11D-A036-01 36334043-4a27-4b60-945a-bef7a9adacbc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G04_667134.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11D-A036-01 36334043-4a27-4b60-945a-bef7a9adacbc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G04_667134.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11D-A036-01 36334043-4a27-4b60-945a-bef7a9adacbc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G04_667134.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11D-A036-01 36334043-4a27-4b60-945a-bef7a9adacbc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G04_667134.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11D-A036-01 36334043-4a27-4b60-945a-bef7a9adacbc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G04_667134.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11D-A036-01 36334043-4a27-4b60-945a-bef7a9adacbc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G04_667134.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11D-A036-01 36334043-4a27-4b60-945a-bef7a9adacbc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G04_667134.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11D-A036-01 36334043-4a27-4b60-945a-bef7a9adacbc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G04_667134.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11D-A044-08 d4e338ec-83a2-41fb-a16c-c778924d7add Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11D-A045-09 7f19a20a-32c8-4f7a-bbcb-079617f7974d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11R-A034-07 3850a348-8e53-497d-8e06-680672b19557 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11R-A034-07 3850a348-8e53-497d-8e06-680672b19557 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012084_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11R-A034-07 3850a348-8e53-497d-8e06-680672b19557 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012084_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11R-A034-07 3850a348-8e53-497d-8e06-680672b19557 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012084_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11R-A034-07 3850a348-8e53-497d-8e06-680672b19557 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_444919.TCGA-BH-A0E7-01A-11R-A034-07.110315_UNC9-SN296_0159_AC008BABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11R-A034-07 3850a348-8e53-497d-8e06-680672b19557 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_444943.TCGA-BH-A0E7-01A-11R-A034-07.110315_UNC9-SN296_0159_AC008BABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11R-A034-07 3850a348-8e53-497d-8e06-680672b19557 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445010.TCGA-BH-A0E7-01A-11R-A034-07.110315_UNC9-SN296_0159_AC008BABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11R-A035-13 27363494-5d46-464a-8b98-c7f59517552d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11R-A035-13 27363494-5d46-464a-8b98-c7f59517552d miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0E7-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11R-A035-13 27363494-5d46-464a-8b98-c7f59517552d miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0E7-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11W-A050-09 1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11W-A050-09 1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11W-A051-08 191d7736-8a4f-4da4-8c42-f783509a38d2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11X-A048-08 c0423bbf-11c9-46c3-ada5-fd57b44f03fe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-01A TCGA-BH-A0E7-01A-11X-A049-09 68968ea5-b4fe-45a3-b25e-6ba759219830 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-10A TCGA-BH-A0E7-10A-01D-A031-02 8ae35c90-0415-4adf-ace5-0b4529bebbe1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-10A TCGA-BH-A0E7-10A-01D-A037-01 31aac559-9878-441b-8958-bb3ecfa5bdff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-10A TCGA-BH-A0E7-10A-01D-A037-01 31aac559-9878-441b-8958-bb3ecfa5bdff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C04_667096.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-BH-A0E7 TCGA-BH-A0E7-10A TCGA-BH-A0E7-10A-01D-A037-01 31aac559-9878-441b-8958-bb3ecfa5bdff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C04_667096.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-10A TCGA-BH-A0E7-10A-01D-A037-01 31aac559-9878-441b-8958-bb3ecfa5bdff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C04_667096.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-10A TCGA-BH-A0E7-10A-01D-A037-01 31aac559-9878-441b-8958-bb3ecfa5bdff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C04_667096.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-10A TCGA-BH-A0E7-10A-01D-A037-01 31aac559-9878-441b-8958-bb3ecfa5bdff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C04_667096.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-10A TCGA-BH-A0E7-10A-01D-A037-01 31aac559-9878-441b-8958-bb3ecfa5bdff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C04_667096.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-10A TCGA-BH-A0E7-10A-01D-A037-01 31aac559-9878-441b-8958-bb3ecfa5bdff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C04_667096.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-10A TCGA-BH-A0E7-10A-01D-A037-01 31aac559-9878-441b-8958-bb3ecfa5bdff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_C04_667096.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-10A TCGA-BH-A0E7-10A-01D-A046-08 fb448d26-5d5f-4cc0-8a35-2c3e9fb56ce3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-10A TCGA-BH-A0E7-10A-01D-A047-09 dd561ea1-ea7f-4ad5-9e5c-2137d7172ccf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-10A TCGA-BH-A0E7-10A-01W-A053-08 90a258de-f1b6-4fb4-a1f3-3a228a3375f3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-10A TCGA-BH-A0E7-10A-01W-A055-09 252cb470-d9b2-40bd-a168-2bef4078d8df Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-10A TCGA-BH-A0E7-10A-01W-A055-09 252cb470-d9b2-40bd-a168-2bef4078d8df Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-10A TCGA-BH-A0E7-10A-01X-A052-08 2dfcb49b-b489-4eda-bb82-523e79301435 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E7 TCGA-BH-A0E7-10A TCGA-BH-A0E7-10A-01X-A054-09 acfffc36-43db-4bab-9fcc-b2615e3c545d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11D-A10X-02 59769b3e-fdaa-4d0b-84e0-578053720f29 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11D-A10Y-09 48ccd30d-0c71-4117-8ccb-013986f14e95 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11D-A10Y-09 48ccd30d-0c71-4117-8ccb-013986f14e95 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11D-A111-01 dc318c7f-d583-49ae-978d-f298cef23098 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11D-A111-01 dc318c7f-d583-49ae-978d-f298cef23098 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E01_735062.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11D-A111-01 dc318c7f-d583-49ae-978d-f298cef23098 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E01_735062.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11D-A111-01 dc318c7f-d583-49ae-978d-f298cef23098 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E01_735062.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11D-A111-01 dc318c7f-d583-49ae-978d-f298cef23098 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E01_735062.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11D-A111-01 dc318c7f-d583-49ae-978d-f298cef23098 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E01_735062.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11D-A111-01 dc318c7f-d583-49ae-978d-f298cef23098 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E01_735062.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11D-A111-01 dc318c7f-d583-49ae-978d-f298cef23098 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E01_735062.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11D-A111-01 dc318c7f-d583-49ae-978d-f298cef23098 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E01_735062.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11D-A112-05 a22e607e-b2ec-4bf7-8c42-a9e379a22ec6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11D-A112-05 a22e607e-b2ec-4bf7-8c42-a9e379a22ec6 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-BH-A0E9-01B-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11D-A112-05 a22e607e-b2ec-4bf7-8c42-a9e379a22ec6 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-BH-A0E9-01B-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11D-A112-05 a22e607e-b2ec-4bf7-8c42-a9e379a22ec6 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-BH-A0E9-01B-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11R-A114-13 5b7f0096-44be-42f1-b434-54bd294e4244 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11R-A114-13 5b7f0096-44be-42f1-b434-54bd294e4244 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0E9-01B-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11R-A114-13 5b7f0096-44be-42f1-b434-54bd294e4244 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0E9-01B-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11R-A115-07 bfc39e77-7a26-4699-a4a3-217d4ea9425b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11R-A115-07 bfc39e77-7a26-4699-a4a3-217d4ea9425b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012786_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11R-A115-07 bfc39e77-7a26-4699-a4a3-217d4ea9425b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012786_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11R-A115-07 bfc39e77-7a26-4699-a4a3-217d4ea9425b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012786_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11R-A115-07 bfc39e77-7a26-4699-a4a3-217d4ea9425b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420784.TCGA-BH-A0E9-01B-11R-A115-07.110608_SN254_0230_AC03JGABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11R-A115-07 bfc39e77-7a26-4699-a4a3-217d4ea9425b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420815.TCGA-BH-A0E9-01B-11R-A115-07.110608_SN254_0230_AC03JGABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11R-A115-07 bfc39e77-7a26-4699-a4a3-217d4ea9425b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420826.TCGA-BH-A0E9-01B-11R-A115-07.110608_SN254_0230_AC03JGABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-01B TCGA-BH-A0E9-01B-11W-A12T-09 d5bff116-6657-4704-80de-cd1975e8d01f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-10A TCGA-BH-A0E9-10A-01D-A10Z-02 fc7592fa-e57d-48c1-a0a6-536e0a84396d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-10A TCGA-BH-A0E9-10A-01D-A110-09 244a360a-b8b8-4a85-b86d-8138b3d6e397 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-10A TCGA-BH-A0E9-10A-01D-A110-09 244a360a-b8b8-4a85-b86d-8138b3d6e397 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-10A TCGA-BH-A0E9-10A-01D-A113-01 d066fd12-3e66-4aa0-90d9-25a28918480d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-10A TCGA-BH-A0E9-10A-01D-A113-01 d066fd12-3e66-4aa0-90d9-25a28918480d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C09_735074.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0E9 TCGA-BH-A0E9-10A TCGA-BH-A0E9-10A-01D-A113-01 d066fd12-3e66-4aa0-90d9-25a28918480d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C09_735074.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-10A TCGA-BH-A0E9-10A-01D-A113-01 d066fd12-3e66-4aa0-90d9-25a28918480d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C09_735074.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-10A TCGA-BH-A0E9-10A-01D-A113-01 d066fd12-3e66-4aa0-90d9-25a28918480d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C09_735074.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-10A TCGA-BH-A0E9-10A-01D-A113-01 d066fd12-3e66-4aa0-90d9-25a28918480d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C09_735074.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-10A TCGA-BH-A0E9-10A-01D-A113-01 d066fd12-3e66-4aa0-90d9-25a28918480d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C09_735074.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-10A TCGA-BH-A0E9-10A-01D-A113-01 d066fd12-3e66-4aa0-90d9-25a28918480d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C09_735074.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-10A TCGA-BH-A0E9-10A-01D-A113-01 d066fd12-3e66-4aa0-90d9-25a28918480d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C09_735074.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0E9 TCGA-BH-A0E9-10A TCGA-BH-A0E9-10A-01W-A12U-09 29c5efbd-d7e8-4f4c-bbcc-635777d6062b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0E9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11D-A10X-02 262715e1-835c-4f16-8ee7-6900e26f7cf5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11D-A10Y-09 561b8777-801a-49ed-a306-e7dafeb044b6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11D-A10Y-09 561b8777-801a-49ed-a306-e7dafeb044b6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11D-A111-01 97c64d6a-7dce-4d0f-9cb3-b3e4eb4719c5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11D-A111-01 97c64d6a-7dce-4d0f-9cb3-b3e4eb4719c5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C12_735072.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11D-A111-01 97c64d6a-7dce-4d0f-9cb3-b3e4eb4719c5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C12_735072.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11D-A111-01 97c64d6a-7dce-4d0f-9cb3-b3e4eb4719c5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C12_735072.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11D-A111-01 97c64d6a-7dce-4d0f-9cb3-b3e4eb4719c5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C12_735072.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11D-A111-01 97c64d6a-7dce-4d0f-9cb3-b3e4eb4719c5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C12_735072.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11D-A111-01 97c64d6a-7dce-4d0f-9cb3-b3e4eb4719c5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C12_735072.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11D-A111-01 97c64d6a-7dce-4d0f-9cb3-b3e4eb4719c5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C12_735072.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11D-A111-01 97c64d6a-7dce-4d0f-9cb3-b3e4eb4719c5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C12_735072.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11D-A112-05 42d050e4-e8ee-4442-b9c0-0ee14706b138 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11D-A112-05 42d050e4-e8ee-4442-b9c0-0ee14706b138 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-BH-A0EA-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11D-A112-05 42d050e4-e8ee-4442-b9c0-0ee14706b138 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-BH-A0EA-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11D-A112-05 42d050e4-e8ee-4442-b9c0-0ee14706b138 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-BH-A0EA-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11R-A114-13 bcb7fc6d-60a0-48b7-aa81-14c0dda72d76 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11R-A114-13 bcb7fc6d-60a0-48b7-aa81-14c0dda72d76 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0EA-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11R-A114-13 bcb7fc6d-60a0-48b7-aa81-14c0dda72d76 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0EA-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11R-A115-07 ca71ca96-cbb7-4eab-9487-251dda34e107 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11R-A115-07 ca71ca96-cbb7-4eab-9487-251dda34e107 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012798_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11R-A115-07 ca71ca96-cbb7-4eab-9487-251dda34e107 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012798_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11R-A115-07 ca71ca96-cbb7-4eab-9487-251dda34e107 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012798_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11R-A115-07 ca71ca96-cbb7-4eab-9487-251dda34e107 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420751.TCGA-BH-A0EA-01A-11R-A115-07.110608_SN254_0230_AC03JGABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11R-A115-07 ca71ca96-cbb7-4eab-9487-251dda34e107 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420764.TCGA-BH-A0EA-01A-11R-A115-07.110608_SN254_0230_AC03JGABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11R-A115-07 ca71ca96-cbb7-4eab-9487-251dda34e107 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420766.TCGA-BH-A0EA-01A-11R-A115-07.110608_SN254_0230_AC03JGABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-01A TCGA-BH-A0EA-01A-11W-A12T-09 edad5bd3-efe0-4c5f-b05c-2c0c2951c45a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-10A TCGA-BH-A0EA-10A-01D-A10Z-02 cde982b7-3b0a-49eb-8710-a599cb0e44c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-10A TCGA-BH-A0EA-10A-01D-A110-09 cfbd5476-e83a-401d-9f9a-639c73a0e35b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-10A TCGA-BH-A0EA-10A-01D-A110-09 cfbd5476-e83a-401d-9f9a-639c73a0e35b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-10A TCGA-BH-A0EA-10A-01D-A113-01 2beb34c4-d493-4a73-b21e-de77d43251ff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-10A TCGA-BH-A0EA-10A-01D-A113-01 2beb34c4-d493-4a73-b21e-de77d43251ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B12_735108.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0EA TCGA-BH-A0EA-10A TCGA-BH-A0EA-10A-01D-A113-01 2beb34c4-d493-4a73-b21e-de77d43251ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B12_735108.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-10A TCGA-BH-A0EA-10A-01D-A113-01 2beb34c4-d493-4a73-b21e-de77d43251ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B12_735108.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-10A TCGA-BH-A0EA-10A-01D-A113-01 2beb34c4-d493-4a73-b21e-de77d43251ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B12_735108.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-10A TCGA-BH-A0EA-10A-01D-A113-01 2beb34c4-d493-4a73-b21e-de77d43251ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B12_735108.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-10A TCGA-BH-A0EA-10A-01D-A113-01 2beb34c4-d493-4a73-b21e-de77d43251ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B12_735108.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-10A TCGA-BH-A0EA-10A-01D-A113-01 2beb34c4-d493-4a73-b21e-de77d43251ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B12_735108.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-10A TCGA-BH-A0EA-10A-01D-A113-01 2beb34c4-d493-4a73-b21e-de77d43251ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_B12_735108.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0EA TCGA-BH-A0EA-10A TCGA-BH-A0EA-10A-01W-A12U-09 b1a3739d-d554-4202-b96f-f25a444e2042 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11D-A032-05 16743a35-e7db-4e1a-9dbe-1a17c9909e82 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11D-A032-05 16743a35-e7db-4e1a-9dbe-1a17c9909e82 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-BH-A0EB-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11D-A032-05 16743a35-e7db-4e1a-9dbe-1a17c9909e82 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-BH-A0EB-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11D-A032-05 16743a35-e7db-4e1a-9dbe-1a17c9909e82 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-BH-A0EB-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11D-A033-02 33a75115-8b3d-41af-8149-cf9336dac835 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11D-A036-01 907f10f6-a879-43a8-9136-e943b896144d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11D-A036-01 907f10f6-a879-43a8-9136-e943b896144d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A05_667220.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11D-A036-01 907f10f6-a879-43a8-9136-e943b896144d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A05_667220.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11D-A036-01 907f10f6-a879-43a8-9136-e943b896144d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A05_667220.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11D-A036-01 907f10f6-a879-43a8-9136-e943b896144d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A05_667220.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11D-A036-01 907f10f6-a879-43a8-9136-e943b896144d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A05_667220.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11D-A036-01 907f10f6-a879-43a8-9136-e943b896144d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A05_667220.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11D-A036-01 907f10f6-a879-43a8-9136-e943b896144d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A05_667220.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11D-A036-01 907f10f6-a879-43a8-9136-e943b896144d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_A05_667220.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11D-A044-08 9162596e-65fd-4341-adff-c8b280124f67 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11D-A045-09 6b97da7d-a1ca-46b5-ad07-399c3e7876f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11R-A034-07 efb01993-cfe4-4f01-b628-ee34fceb4a5e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11R-A034-07 efb01993-cfe4-4f01-b628-ee34fceb4a5e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012090_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11R-A034-07 efb01993-cfe4-4f01-b628-ee34fceb4a5e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012090_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11R-A034-07 efb01993-cfe4-4f01-b628-ee34fceb4a5e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012090_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11R-A034-07 efb01993-cfe4-4f01-b628-ee34fceb4a5e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445086.TCGA-BH-A0EB-01A-11R-A034-07.110315_UNC9-SN296_0159_AC008BABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11R-A034-07 efb01993-cfe4-4f01-b628-ee34fceb4a5e RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11W-A050-09 3861ca01-bcc3-42a9-835d-1ef9f1a053bd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11W-A050-09 3861ca01-bcc3-42a9-835d-1ef9f1a053bd Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11W-A050-09 3861ca01-bcc3-42a9-835d-1ef9f1a053bd Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11W-A051-08 fcacf8dc-f84c-43cc-8edd-c5b7a11b091c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11X-A048-08 dd03b7ce-5796-449a-8e88-5701dfd342b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-01A TCGA-BH-A0EB-01A-11X-A049-09 12d4857d-4f7b-4f3a-9a0a-d5aeb6d4633d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-10A TCGA-BH-A0EB-10A-01D-A031-02 f28a2123-4b59-4080-ab7a-e9518545aed9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-10A TCGA-BH-A0EB-10A-01D-A037-01 6efb77ba-0203-4077-a909-4b632a9cb52a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-10A TCGA-BH-A0EB-10A-01D-A037-01 6efb77ba-0203-4077-a909-4b632a9cb52a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D04_667158.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-BH-A0EB TCGA-BH-A0EB-10A TCGA-BH-A0EB-10A-01D-A037-01 6efb77ba-0203-4077-a909-4b632a9cb52a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D04_667158.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-10A TCGA-BH-A0EB-10A-01D-A037-01 6efb77ba-0203-4077-a909-4b632a9cb52a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D04_667158.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-10A TCGA-BH-A0EB-10A-01D-A037-01 6efb77ba-0203-4077-a909-4b632a9cb52a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D04_667158.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-10A TCGA-BH-A0EB-10A-01D-A037-01 6efb77ba-0203-4077-a909-4b632a9cb52a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D04_667158.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-10A TCGA-BH-A0EB-10A-01D-A037-01 6efb77ba-0203-4077-a909-4b632a9cb52a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D04_667158.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-10A TCGA-BH-A0EB-10A-01D-A037-01 6efb77ba-0203-4077-a909-4b632a9cb52a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D04_667158.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-10A TCGA-BH-A0EB-10A-01D-A037-01 6efb77ba-0203-4077-a909-4b632a9cb52a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D04_667158.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-10A TCGA-BH-A0EB-10A-01D-A046-08 a584fb5e-0c79-4a2d-b100-4e7fd0afb584 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-10A TCGA-BH-A0EB-10A-01D-A047-09 f719fe9a-8bfd-4834-965b-8575a0473c5c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-10A TCGA-BH-A0EB-10A-01W-A053-08 2eeec9fe-a6b2-4ad2-83e7-8d99cd46c9f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-10A TCGA-BH-A0EB-10A-01W-A055-09 991496de-9acd-43e0-b853-2c19c155254e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-10A TCGA-BH-A0EB-10A-01W-A055-09 991496de-9acd-43e0-b853-2c19c155254e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-10A TCGA-BH-A0EB-10A-01W-A055-09 991496de-9acd-43e0-b853-2c19c155254e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-10A TCGA-BH-A0EB-10A-01X-A052-08 91e936f5-726b-4704-97b5-90c467bc6e43 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EB TCGA-BH-A0EB-10A TCGA-BH-A0EB-10A-01X-A054-09 38c481b6-f70b-4f1d-81b3-213f77aaf7da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11D-A032-05 a4312e58-0107-4625-ab52-85292573410b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11D-A032-05 a4312e58-0107-4625-ab52-85292573410b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-BH-A0EE-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11D-A032-05 a4312e58-0107-4625-ab52-85292573410b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-BH-A0EE-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11D-A032-05 a4312e58-0107-4625-ab52-85292573410b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-BH-A0EE-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11D-A033-02 7223f12a-2cc3-408f-b92d-8efd9d763c53 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11D-A036-01 de7f658d-2508-4621-afcd-c64ba3e554d2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11D-A036-01 de7f658d-2508-4621-afcd-c64ba3e554d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E08_667232.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11D-A036-01 de7f658d-2508-4621-afcd-c64ba3e554d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E08_667232.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11D-A036-01 de7f658d-2508-4621-afcd-c64ba3e554d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E08_667232.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11D-A036-01 de7f658d-2508-4621-afcd-c64ba3e554d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E08_667232.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11D-A036-01 de7f658d-2508-4621-afcd-c64ba3e554d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E08_667232.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11D-A036-01 de7f658d-2508-4621-afcd-c64ba3e554d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E08_667232.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11D-A036-01 de7f658d-2508-4621-afcd-c64ba3e554d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E08_667232.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11D-A036-01 de7f658d-2508-4621-afcd-c64ba3e554d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E08_667232.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11D-A044-08 0c348eb2-a375-4f67-933c-29caaa0d93cc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11D-A045-09 d0597b56-e21d-4125-b742-2817faeeaa78 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11R-A034-07 24c0ef45-670d-4595-b623-87f81aeb92a7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11R-A034-07 24c0ef45-670d-4595-b623-87f81aeb92a7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012100_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11R-A034-07 24c0ef45-670d-4595-b623-87f81aeb92a7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012100_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11R-A034-07 24c0ef45-670d-4595-b623-87f81aeb92a7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012100_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11R-A034-07 24c0ef45-670d-4595-b623-87f81aeb92a7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445152.TCGA-BH-A0EE-01A-11R-A034-07.110315_UNC9-SN296_0159_AC008BABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11R-A034-07 24c0ef45-670d-4595-b623-87f81aeb92a7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445221.TCGA-BH-A0EE-01A-11R-A034-07.110315_UNC9-SN296_0159_AC008BABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11R-A034-07 24c0ef45-670d-4595-b623-87f81aeb92a7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445305.TCGA-BH-A0EE-01A-11R-A034-07.110315_UNC9-SN296_0159_AC008BABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11R-A035-13 a974a914-05ba-44f1-9976-2cc5c8df64db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11R-A035-13 a974a914-05ba-44f1-9976-2cc5c8df64db miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0EE-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11R-A035-13 a974a914-05ba-44f1-9976-2cc5c8df64db miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0EE-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11W-A050-09 68d16e6a-20a5-428f-89d0-a8a0deda80cc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11W-A050-09 68d16e6a-20a5-428f-89d0-a8a0deda80cc Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11W-A051-08 046562e0-ff83-4138-b382-b3bbfbbec395 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11X-A048-08 6234aef7-55aa-4950-9de3-f90ed8172cd9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-01A TCGA-BH-A0EE-01A-11X-A049-09 cd1c4d95-8085-4d42-bb3f-95035e717eea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-10A TCGA-BH-A0EE-10A-01D-A031-02 fdd21ca2-c73b-49d3-b042-d0286fe5f0c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-10A TCGA-BH-A0EE-10A-01D-A037-01 1df97845-371d-4967-bc72-ebfd5627cba0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-10A TCGA-BH-A0EE-10A-01D-A037-01 1df97845-371d-4967-bc72-ebfd5627cba0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E05_667114.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-BH-A0EE TCGA-BH-A0EE-10A TCGA-BH-A0EE-10A-01D-A037-01 1df97845-371d-4967-bc72-ebfd5627cba0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E05_667114.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-10A TCGA-BH-A0EE-10A-01D-A037-01 1df97845-371d-4967-bc72-ebfd5627cba0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E05_667114.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-10A TCGA-BH-A0EE-10A-01D-A037-01 1df97845-371d-4967-bc72-ebfd5627cba0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E05_667114.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-10A TCGA-BH-A0EE-10A-01D-A037-01 1df97845-371d-4967-bc72-ebfd5627cba0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E05_667114.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-10A TCGA-BH-A0EE-10A-01D-A037-01 1df97845-371d-4967-bc72-ebfd5627cba0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E05_667114.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-10A TCGA-BH-A0EE-10A-01D-A037-01 1df97845-371d-4967-bc72-ebfd5627cba0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E05_667114.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-10A TCGA-BH-A0EE-10A-01D-A037-01 1df97845-371d-4967-bc72-ebfd5627cba0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E05_667114.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-10A TCGA-BH-A0EE-10A-01D-A046-08 c105c193-bf49-4f3a-b4e9-ad2904cab106 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-10A TCGA-BH-A0EE-10A-01D-A047-09 1f3475f9-a3a0-4dec-881f-0d6d34998aa1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-10A TCGA-BH-A0EE-10A-01W-A053-08 7f13fd7f-2575-4803-9c5e-8b1b8bdbd80e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-10A TCGA-BH-A0EE-10A-01W-A055-09 f4528a3f-aa6b-4964-80fd-afa642427616 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-10A TCGA-BH-A0EE-10A-01W-A055-09 f4528a3f-aa6b-4964-80fd-afa642427616 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-10A TCGA-BH-A0EE-10A-01X-A052-08 c335b786-e7c5-4880-8858-ee7a594ddcc7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EE TCGA-BH-A0EE-10A TCGA-BH-A0EE-10A-01X-A054-09 b8b025e0-b028-40cf-a9f1-852c5702c0d2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11D-A10X-02 f1bbc4f1-f646-42e7-bd23-135944fcf403 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11D-A10Y-09 ee8e93e0-d08c-400e-8ed7-ae56d7aefbec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11D-A10Y-09 ee8e93e0-d08c-400e-8ed7-ae56d7aefbec Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11D-A111-01 690c778d-bca2-48c6-b084-3445f58cf216 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11D-A111-01 690c778d-bca2-48c6-b084-3445f58cf216 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D02_735046.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11D-A111-01 690c778d-bca2-48c6-b084-3445f58cf216 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D02_735046.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11D-A111-01 690c778d-bca2-48c6-b084-3445f58cf216 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D02_735046.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11D-A111-01 690c778d-bca2-48c6-b084-3445f58cf216 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D02_735046.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11D-A111-01 690c778d-bca2-48c6-b084-3445f58cf216 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D02_735046.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11D-A111-01 690c778d-bca2-48c6-b084-3445f58cf216 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D02_735046.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11D-A111-01 690c778d-bca2-48c6-b084-3445f58cf216 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D02_735046.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11D-A111-01 690c778d-bca2-48c6-b084-3445f58cf216 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_D02_735046.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11D-A112-05 8356985e-2871-4118-9e68-75be4f4169d7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11D-A112-05 8356985e-2871-4118-9e68-75be4f4169d7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-BH-A0EI-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11D-A112-05 8356985e-2871-4118-9e68-75be4f4169d7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-BH-A0EI-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11D-A112-05 8356985e-2871-4118-9e68-75be4f4169d7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-BH-A0EI-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11R-A114-13 373402d0-2283-44d1-a14c-f9483a8d97b7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11R-A114-13 373402d0-2283-44d1-a14c-f9483a8d97b7 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0EI-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11R-A114-13 373402d0-2283-44d1-a14c-f9483a8d97b7 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0EI-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11R-A115-07 c6929312-e22d-4d4e-830d-6f735184d9b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11R-A115-07 c6929312-e22d-4d4e-830d-6f735184d9b2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012810_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11R-A115-07 c6929312-e22d-4d4e-830d-6f735184d9b2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012810_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11R-A115-07 c6929312-e22d-4d4e-830d-6f735184d9b2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012810_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11R-A115-07 c6929312-e22d-4d4e-830d-6f735184d9b2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421444.TCGA-BH-A0EI-01A-11R-A115-07.110527_UNC10-SN254_0224_AD0CPKABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11R-A115-07 c6929312-e22d-4d4e-830d-6f735184d9b2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421452.TCGA-BH-A0EI-01A-11R-A115-07.110527_UNC10-SN254_0224_AD0CPKABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11R-A115-07 c6929312-e22d-4d4e-830d-6f735184d9b2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421489.TCGA-BH-A0EI-01A-11R-A115-07.110527_UNC10-SN254_0224_AD0CPKABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-01A TCGA-BH-A0EI-01A-11W-A12T-09 c2220beb-b47b-408c-aef1-3ce5c9b43649 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-10A TCGA-BH-A0EI-10A-01D-A10Z-02 1e829324-aa56-4496-b1c6-b746e4714fc6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-10A TCGA-BH-A0EI-10A-01D-A110-09 0fb7e29d-006a-4f20-b0d8-77f941c16eaa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-10A TCGA-BH-A0EI-10A-01D-A110-09 0fb7e29d-006a-4f20-b0d8-77f941c16eaa Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-10A TCGA-BH-A0EI-10A-01D-A113-01 ca29a97d-c732-43c8-ad0d-40ace414188d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-10A TCGA-BH-A0EI-10A-01D-A113-01 ca29a97d-c732-43c8-ad0d-40ace414188d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E06_735110.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0EI TCGA-BH-A0EI-10A TCGA-BH-A0EI-10A-01D-A113-01 ca29a97d-c732-43c8-ad0d-40ace414188d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E06_735110.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-10A TCGA-BH-A0EI-10A-01D-A113-01 ca29a97d-c732-43c8-ad0d-40ace414188d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E06_735110.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-10A TCGA-BH-A0EI-10A-01D-A113-01 ca29a97d-c732-43c8-ad0d-40ace414188d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E06_735110.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-10A TCGA-BH-A0EI-10A-01D-A113-01 ca29a97d-c732-43c8-ad0d-40ace414188d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E06_735110.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-10A TCGA-BH-A0EI-10A-01D-A113-01 ca29a97d-c732-43c8-ad0d-40ace414188d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E06_735110.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-10A TCGA-BH-A0EI-10A-01D-A113-01 ca29a97d-c732-43c8-ad0d-40ace414188d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E06_735110.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-10A TCGA-BH-A0EI-10A-01D-A113-01 ca29a97d-c732-43c8-ad0d-40ace414188d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_E06_735110.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0EI TCGA-BH-A0EI-10A TCGA-BH-A0EI-10A-01W-A12U-09 e82cc06a-2385-47ca-80db-f4699fcd5225 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0EI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-01A TCGA-BH-A0GY-01A-11D-A058-05 878ff050-b3e7-434b-904d-43eb0bf2945f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-01A TCGA-BH-A0GY-01A-11D-A059-01 02275f5e-a3bf-4759-b481-d5ef710dff56 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-01A TCGA-BH-A0GY-01A-11D-A059-01 02275f5e-a3bf-4759-b481-d5ef710dff56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G04_697204.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0GY TCGA-BH-A0GY-01A TCGA-BH-A0GY-01A-11D-A059-01 02275f5e-a3bf-4759-b481-d5ef710dff56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G04_697204.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-01A TCGA-BH-A0GY-01A-11D-A059-01 02275f5e-a3bf-4759-b481-d5ef710dff56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G04_697204.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-01A TCGA-BH-A0GY-01A-11D-A059-01 02275f5e-a3bf-4759-b481-d5ef710dff56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G04_697204.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-01A TCGA-BH-A0GY-01A-11D-A059-01 02275f5e-a3bf-4759-b481-d5ef710dff56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G04_697204.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-01A TCGA-BH-A0GY-01A-11D-A059-01 02275f5e-a3bf-4759-b481-d5ef710dff56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G04_697204.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-01A TCGA-BH-A0GY-01A-11D-A059-01 02275f5e-a3bf-4759-b481-d5ef710dff56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G04_697204.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-01A TCGA-BH-A0GY-01A-11D-A059-01 02275f5e-a3bf-4759-b481-d5ef710dff56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G04_697204.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-01A TCGA-BH-A0GY-01A-11D-A060-02 f5c72179-9bda-4bc6-b006-93eb616804bc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-01A TCGA-BH-A0GY-01A-11D-A074-08 478ca60a-3345-4324-a12b-a88fac84696d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-01A TCGA-BH-A0GY-01A-11D-A075-09 31938b99-96d7-4671-b093-9f4ec492c1b8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-01A TCGA-BH-A0GY-01A-11D-A10P-05 ed54c50c-bb80-40cf-a4ce-811afdd952fe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-01A TCGA-BH-A0GY-01A-11D-A10P-05 ed54c50c-bb80-40cf-a4ce-811afdd952fe DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486021_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-01A TCGA-BH-A0GY-01A-11D-A10P-05 ed54c50c-bb80-40cf-a4ce-811afdd952fe DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486021_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-01A TCGA-BH-A0GY-01A-11D-A10P-05 ed54c50c-bb80-40cf-a4ce-811afdd952fe DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0GY-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-01A TCGA-BH-A0GY-01A-11D-A10P-05 ed54c50c-bb80-40cf-a4ce-811afdd952fe DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-01A TCGA-BH-A0GY-01A-11R-A057-13 622e8bea-86ac-4a47-a29b-1d5b4f4f0844 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0GY-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-01A TCGA-BH-A0GY-01A-11R-A057-13 622e8bea-86ac-4a47-a29b-1d5b4f4f0844 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0GY-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-01A TCGA-BH-A0GY-01A-11W-A070-08 3e8f3963-4db8-45ee-a8ef-c1b48c3e9a30 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-01A TCGA-BH-A0GY-01A-11W-A071-09 db589949-1630-45b2-b09b-0312d3efd60b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-01A TCGA-BH-A0GY-01A-11W-A071-09 db589949-1630-45b2-b09b-0312d3efd60b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-01A TCGA-BH-A0GY-01A-11X-A072-08 fafc1a6a-1f5f-4375-80a1-14066b768d40 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-01A TCGA-BH-A0GY-01A-11X-A073-09 f507df7b-0779-4602-8e3b-c76f8b92ddd1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-10A TCGA-BH-A0GY-10A-01D-A059-01 51a8adfc-2b01-4cae-a3ad-361df3190f90 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-10A TCGA-BH-A0GY-10A-01D-A059-01 51a8adfc-2b01-4cae-a3ad-361df3190f90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A08_697164.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0GY TCGA-BH-A0GY-10A TCGA-BH-A0GY-10A-01D-A059-01 51a8adfc-2b01-4cae-a3ad-361df3190f90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A08_697164.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-10A TCGA-BH-A0GY-10A-01D-A059-01 51a8adfc-2b01-4cae-a3ad-361df3190f90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A08_697164.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-10A TCGA-BH-A0GY-10A-01D-A059-01 51a8adfc-2b01-4cae-a3ad-361df3190f90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A08_697164.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-10A TCGA-BH-A0GY-10A-01D-A059-01 51a8adfc-2b01-4cae-a3ad-361df3190f90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A08_697164.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-10A TCGA-BH-A0GY-10A-01D-A059-01 51a8adfc-2b01-4cae-a3ad-361df3190f90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A08_697164.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-10A TCGA-BH-A0GY-10A-01D-A059-01 51a8adfc-2b01-4cae-a3ad-361df3190f90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A08_697164.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-10A TCGA-BH-A0GY-10A-01D-A059-01 51a8adfc-2b01-4cae-a3ad-361df3190f90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A08_697164.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-10A TCGA-BH-A0GY-10A-01D-A060-02 a9c89a38-c132-4ba7-a2d4-26b3184aa047 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-10A TCGA-BH-A0GY-10A-01D-A074-08 9e569437-fab7-4be3-b6fc-e1f33c11396f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-10A TCGA-BH-A0GY-10A-01D-A075-09 3d5816fe-0822-4e80-8d78-ed1f6dd832e2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-10A TCGA-BH-A0GY-10A-01W-A070-08 53f8fcb1-13e0-499f-a4e3-d0ce4658b81d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-10A TCGA-BH-A0GY-10A-01W-A071-09 066a335d-a487-40d1-963c-71a15f5ed769 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-10A TCGA-BH-A0GY-10A-01W-A071-09 066a335d-a487-40d1-963c-71a15f5ed769 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-10A TCGA-BH-A0GY-10A-01X-A072-08 7edc0b9a-398c-4c08-9777-e536d148f936 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GY TCGA-BH-A0GY-10A TCGA-BH-A0GY-10A-01X-A073-09 27d455ab-1c21-43a9-9300-54ec3b72f0e5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11D-A058-05 0aff1867-1418-4d8b-a42a-bcdaefa865fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11D-A059-01 833793a9-9708-4363-ac40-ce7960a5e13d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11D-A059-01 833793a9-9708-4363-ac40-ce7960a5e13d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H10_697068.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11D-A059-01 833793a9-9708-4363-ac40-ce7960a5e13d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H10_697068.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11D-A059-01 833793a9-9708-4363-ac40-ce7960a5e13d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H10_697068.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11D-A059-01 833793a9-9708-4363-ac40-ce7960a5e13d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H10_697068.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11D-A059-01 833793a9-9708-4363-ac40-ce7960a5e13d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H10_697068.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11D-A059-01 833793a9-9708-4363-ac40-ce7960a5e13d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H10_697068.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11D-A059-01 833793a9-9708-4363-ac40-ce7960a5e13d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H10_697068.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11D-A059-01 833793a9-9708-4363-ac40-ce7960a5e13d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H10_697068.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11D-A060-02 415a33c6-7a73-44a4-8217-f38829ccb4d0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11D-A074-08 2ebfa20c-4ab8-413e-9e76-859e044320f0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11D-A075-09 78e880f1-f44e-4a69-be19-9ec836fccd61 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11D-A10P-05 8a85d9d8-1c13-4286-8261-02c59a8a756e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11D-A10P-05 8a85d9d8-1c13-4286-8261-02c59a8a756e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486021_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11D-A10P-05 8a85d9d8-1c13-4286-8261-02c59a8a756e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486021_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11D-A10P-05 8a85d9d8-1c13-4286-8261-02c59a8a756e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0GZ-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11D-A10P-05 8a85d9d8-1c13-4286-8261-02c59a8a756e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0GZ-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11R-A056-07 8ffcb765-094c-4623-b172-ea8400965f00 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11R-A056-07 8ffcb765-094c-4623-b172-ea8400965f00 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012515_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11R-A056-07 8ffcb765-094c-4623-b172-ea8400965f00 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012515_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11R-A056-07 8ffcb765-094c-4623-b172-ea8400965f00 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012515_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11R-A056-07 8ffcb765-094c-4623-b172-ea8400965f00 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477991.TCGA-BH-A0GZ-01A-11R-A056-07.110325_UNC11-SN627_0071_BB042MABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11R-A056-07 8ffcb765-094c-4623-b172-ea8400965f00 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478005.TCGA-BH-A0GZ-01A-11R-A056-07.110325_UNC11-SN627_0071_BB042MABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11R-A056-07 8ffcb765-094c-4623-b172-ea8400965f00 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478135.TCGA-BH-A0GZ-01A-11R-A056-07.110325_UNC11-SN627_0071_BB042MABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11R-A057-13 7f44139b-706a-4820-8f89-c2df942a6ee0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11R-A057-13 7f44139b-706a-4820-8f89-c2df942a6ee0 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0GZ-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11R-A057-13 7f44139b-706a-4820-8f89-c2df942a6ee0 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0GZ-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11W-A070-08 698d31b6-16fc-4110-9e98-01c4d9651d6a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11W-A071-09 068bd892-6fee-46c2-945f-34a6c6804070 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11W-A071-09 068bd892-6fee-46c2-945f-34a6c6804070 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11X-A072-08 38a56bd7-3cb0-4ec9-ac93-6aa9735bec54 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-01A TCGA-BH-A0GZ-01A-11X-A073-09 6b3da268-c997-4de1-adbc-e6a808871286 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-10A TCGA-BH-A0GZ-10A-01D-A059-01 b1f157a7-6e1c-4266-8a97-7ce1f92d08f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-10A TCGA-BH-A0GZ-10A-01D-A059-01 b1f157a7-6e1c-4266-8a97-7ce1f92d08f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G08_697172.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0GZ TCGA-BH-A0GZ-10A TCGA-BH-A0GZ-10A-01D-A059-01 b1f157a7-6e1c-4266-8a97-7ce1f92d08f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G08_697172.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-10A TCGA-BH-A0GZ-10A-01D-A059-01 b1f157a7-6e1c-4266-8a97-7ce1f92d08f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G08_697172.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-10A TCGA-BH-A0GZ-10A-01D-A059-01 b1f157a7-6e1c-4266-8a97-7ce1f92d08f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G08_697172.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-10A TCGA-BH-A0GZ-10A-01D-A059-01 b1f157a7-6e1c-4266-8a97-7ce1f92d08f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G08_697172.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-10A TCGA-BH-A0GZ-10A-01D-A059-01 b1f157a7-6e1c-4266-8a97-7ce1f92d08f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G08_697172.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-10A TCGA-BH-A0GZ-10A-01D-A059-01 b1f157a7-6e1c-4266-8a97-7ce1f92d08f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G08_697172.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-10A TCGA-BH-A0GZ-10A-01D-A059-01 b1f157a7-6e1c-4266-8a97-7ce1f92d08f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G08_697172.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-10A TCGA-BH-A0GZ-10A-01D-A060-02 1d214db3-47ab-4ebc-800e-72931d28a3b4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-10A TCGA-BH-A0GZ-10A-01D-A074-08 e565c3ea-59a6-42d5-86d1-b2113b4f8fce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-10A TCGA-BH-A0GZ-10A-01D-A075-09 81aae7dc-0364-4620-b70f-c18bfdd845e9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-10A TCGA-BH-A0GZ-10A-01W-A070-08 bfdb4e12-aef2-4fa9-8cb5-ab7307c3e6a9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-10A TCGA-BH-A0GZ-10A-01W-A071-09 907908c6-b11c-4e36-980e-f4aa6a132057 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-10A TCGA-BH-A0GZ-10A-01W-A071-09 907908c6-b11c-4e36-980e-f4aa6a132057 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-10A TCGA-BH-A0GZ-10A-01X-A072-08 cfc2c83d-518f-44a0-a2e8-2652d5b45094 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0GZ TCGA-BH-A0GZ-10A TCGA-BH-A0GZ-10A-01X-A073-09 fa8349f9-b7d6-4e44-a42b-7bba4a9472fa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0GZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11D-A058-05 b231b949-33c6-4209-bf5a-ecfa6621a97d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11D-A059-01 e41ffe8d-8ad8-4ca1-9110-52c105f6f7ca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11D-A059-01 e41ffe8d-8ad8-4ca1-9110-52c105f6f7ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G09_697048.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11D-A059-01 e41ffe8d-8ad8-4ca1-9110-52c105f6f7ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G09_697048.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11D-A059-01 e41ffe8d-8ad8-4ca1-9110-52c105f6f7ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G09_697048.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11D-A059-01 e41ffe8d-8ad8-4ca1-9110-52c105f6f7ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G09_697048.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11D-A059-01 e41ffe8d-8ad8-4ca1-9110-52c105f6f7ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G09_697048.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11D-A059-01 e41ffe8d-8ad8-4ca1-9110-52c105f6f7ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G09_697048.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11D-A059-01 e41ffe8d-8ad8-4ca1-9110-52c105f6f7ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G09_697048.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11D-A059-01 e41ffe8d-8ad8-4ca1-9110-52c105f6f7ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G09_697048.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11D-A060-02 d342bc85-5bbf-42a2-b5d7-1aacce3019fa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11D-A074-08 91f82730-4d8a-456d-85b6-fa1708a39d17 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11D-A075-09 74aabcfb-5d88-434d-ae91-98c5b4c5583b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11D-A10P-05 a43bbf60-d5aa-4fc5-adb2-f8c0e8c5beae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11D-A10P-05 a43bbf60-d5aa-4fc5-adb2-f8c0e8c5beae DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486014_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11D-A10P-05 a43bbf60-d5aa-4fc5-adb2-f8c0e8c5beae DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486014_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11D-A10P-05 a43bbf60-d5aa-4fc5-adb2-f8c0e8c5beae DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0H0-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11D-A10P-05 a43bbf60-d5aa-4fc5-adb2-f8c0e8c5beae DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0H0-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11R-A056-07 38e26122-c473-41c1-afb0-cd3b9096e9f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11R-A056-07 38e26122-c473-41c1-afb0-cd3b9096e9f4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012262_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11R-A056-07 38e26122-c473-41c1-afb0-cd3b9096e9f4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012262_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11R-A056-07 38e26122-c473-41c1-afb0-cd3b9096e9f4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012262_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11R-A056-07 38e26122-c473-41c1-afb0-cd3b9096e9f4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478002.TCGA-BH-A0H0-01A-11R-A056-07.110325_UNC11-SN627_0071_BB042MABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11R-A056-07 38e26122-c473-41c1-afb0-cd3b9096e9f4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478009.TCGA-BH-A0H0-01A-11R-A056-07.110325_UNC11-SN627_0071_BB042MABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11R-A056-07 38e26122-c473-41c1-afb0-cd3b9096e9f4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478138.TCGA-BH-A0H0-01A-11R-A056-07.110325_UNC11-SN627_0071_BB042MABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11R-A057-13 1a241b25-4f20-4af5-acee-c0dc4e08d0b3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11R-A057-13 1a241b25-4f20-4af5-acee-c0dc4e08d0b3 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0H0-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11R-A057-13 1a241b25-4f20-4af5-acee-c0dc4e08d0b3 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0H0-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11W-A070-08 2049b705-42c5-40bd-b85c-290dceba0b11 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11W-A071-09 69110467-4cf5-4b5d-a2dd-b1c91e786959 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11W-A071-09 69110467-4cf5-4b5d-a2dd-b1c91e786959 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11X-A072-08 91d96b9d-7e77-463a-a129-924af45529d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-01A TCGA-BH-A0H0-01A-11X-A073-09 a4e3f953-651d-4956-81c3-8cbc164ab387 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-10A TCGA-BH-A0H0-10A-01D-A059-01 519b6b6c-5b3d-4332-b6d0-efcef02fbfac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-10A TCGA-BH-A0H0-10A-01D-A059-01 519b6b6c-5b3d-4332-b6d0-efcef02fbfac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B02_697064.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0H0 TCGA-BH-A0H0-10A TCGA-BH-A0H0-10A-01D-A059-01 519b6b6c-5b3d-4332-b6d0-efcef02fbfac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B02_697064.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-10A TCGA-BH-A0H0-10A-01D-A059-01 519b6b6c-5b3d-4332-b6d0-efcef02fbfac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B02_697064.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-10A TCGA-BH-A0H0-10A-01D-A059-01 519b6b6c-5b3d-4332-b6d0-efcef02fbfac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B02_697064.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-10A TCGA-BH-A0H0-10A-01D-A059-01 519b6b6c-5b3d-4332-b6d0-efcef02fbfac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B02_697064.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-10A TCGA-BH-A0H0-10A-01D-A059-01 519b6b6c-5b3d-4332-b6d0-efcef02fbfac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B02_697064.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-10A TCGA-BH-A0H0-10A-01D-A059-01 519b6b6c-5b3d-4332-b6d0-efcef02fbfac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B02_697064.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-10A TCGA-BH-A0H0-10A-01D-A059-01 519b6b6c-5b3d-4332-b6d0-efcef02fbfac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B02_697064.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-10A TCGA-BH-A0H0-10A-01D-A060-02 c182a939-2ffa-4317-80cd-a485e114cd9f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-10A TCGA-BH-A0H0-10A-01D-A074-08 d97ea4de-fca3-4498-a2fa-cccc68ec004c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-10A TCGA-BH-A0H0-10A-01D-A075-09 39f4aa0a-813a-45c3-b75d-738d230eb0f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-10A TCGA-BH-A0H0-10A-01W-A070-08 fa3f9bd3-76f8-4cb5-a395-349c07d13c58 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-10A TCGA-BH-A0H0-10A-01W-A071-09 49c66d20-3515-4425-a51a-975e2ce61b0c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-10A TCGA-BH-A0H0-10A-01W-A071-09 49c66d20-3515-4425-a51a-975e2ce61b0c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-10A TCGA-BH-A0H0-10A-01X-A072-08 e63c49a5-8988-4a05-94a6-b1441d0294e3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H0 TCGA-BH-A0H0-10A TCGA-BH-A0H0-10A-01X-A073-09 5f30b645-6c84-4879-87f8-323f6476eb7d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11D-A12M-02 3c0d8470-0fa3-47cf-bccf-d2433a00b500 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11D-A12N-01 836dd390-a9e4-416f-b0e1-a9fdb37155ab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11D-A12N-01 836dd390-a9e4-416f-b0e1-a9fdb37155ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E04_747942.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11D-A12N-01 836dd390-a9e4-416f-b0e1-a9fdb37155ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E04_747942.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11D-A12N-01 836dd390-a9e4-416f-b0e1-a9fdb37155ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E04_747942.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11D-A12N-01 836dd390-a9e4-416f-b0e1-a9fdb37155ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E04_747942.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11D-A12N-01 836dd390-a9e4-416f-b0e1-a9fdb37155ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E04_747942.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11D-A12N-01 836dd390-a9e4-416f-b0e1-a9fdb37155ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E04_747942.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11D-A12N-01 836dd390-a9e4-416f-b0e1-a9fdb37155ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E04_747942.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11D-A12N-01 836dd390-a9e4-416f-b0e1-a9fdb37155ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E04_747942.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11D-A12Q-09 12d7dc75-2e4f-42f6-a067-fe6d7118a0b6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11D-A12Q-09 12d7dc75-2e4f-42f6-a067-fe6d7118a0b6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11D-A12R-05 f16362d0-1116-410d-b707-167c69af54b7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11D-A12R-05 f16362d0-1116-410d-b707-167c69af54b7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324030_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11D-A12R-05 f16362d0-1116-410d-b707-167c69af54b7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324030_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11D-A12R-05 f16362d0-1116-410d-b707-167c69af54b7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-BH-A0H3-01A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11D-A12R-05 f16362d0-1116-410d-b707-167c69af54b7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-BH-A0H3-01A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11R-A12O-13 0ca73e83-caec-4058-9df6-ef22b03af0ad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11R-A12O-13 0ca73e83-caec-4058-9df6-ef22b03af0ad miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0H3-01A-11R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11R-A12O-13 0ca73e83-caec-4058-9df6-ef22b03af0ad miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0H3-01A-11R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11R-A12P-07 4baa8edc-9ab0-4cd6-b316-dfe1ff7c1f4d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11R-A12P-07 4baa8edc-9ab0-4cd6-b316-dfe1ff7c1f4d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013061_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11R-A12P-07 4baa8edc-9ab0-4cd6-b316-dfe1ff7c1f4d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013061_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11R-A12P-07 4baa8edc-9ab0-4cd6-b316-dfe1ff7c1f4d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013061_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11R-A12P-07 4baa8edc-9ab0-4cd6-b316-dfe1ff7c1f4d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_435628.TCGA-BH-A0H3-01A-11R-A12P-07.110801_UNC10-SN254_0250_AC01YCABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11R-A12P-07 4baa8edc-9ab0-4cd6-b316-dfe1ff7c1f4d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_435657.TCGA-BH-A0H3-01A-11R-A12P-07.110801_UNC10-SN254_0250_AC01YCABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11R-A12P-07 4baa8edc-9ab0-4cd6-b316-dfe1ff7c1f4d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_435732.TCGA-BH-A0H3-01A-11R-A12P-07.110801_UNC10-SN254_0250_AC01YCABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-01A TCGA-BH-A0H3-01A-11W-A14O-09 5b59a84b-d1d0-4d9b-a60d-f72eccde5efd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-11A TCGA-BH-A0H3-11A-12D-A12M-02 07a5d4a5-f223-43fa-a7d8-36299eee471c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-11A TCGA-BH-A0H3-11A-12D-A12N-01 b9d29bc1-6108-41ca-ae65-77bdaccbc36f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-11A TCGA-BH-A0H3-11A-12D-A12N-01 b9d29bc1-6108-41ca-ae65-77bdaccbc36f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A02_747974.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0H3 TCGA-BH-A0H3-11A TCGA-BH-A0H3-11A-12D-A12N-01 b9d29bc1-6108-41ca-ae65-77bdaccbc36f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A02_747974.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-11A TCGA-BH-A0H3-11A-12D-A12N-01 b9d29bc1-6108-41ca-ae65-77bdaccbc36f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A02_747974.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-11A TCGA-BH-A0H3-11A-12D-A12N-01 b9d29bc1-6108-41ca-ae65-77bdaccbc36f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A02_747974.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-11A TCGA-BH-A0H3-11A-12D-A12N-01 b9d29bc1-6108-41ca-ae65-77bdaccbc36f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A02_747974.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-11A TCGA-BH-A0H3-11A-12D-A12N-01 b9d29bc1-6108-41ca-ae65-77bdaccbc36f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A02_747974.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-11A TCGA-BH-A0H3-11A-12D-A12N-01 b9d29bc1-6108-41ca-ae65-77bdaccbc36f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A02_747974.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-11A TCGA-BH-A0H3-11A-12D-A12N-01 b9d29bc1-6108-41ca-ae65-77bdaccbc36f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A02_747974.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-11A TCGA-BH-A0H3-11A-12D-A12Q-09 e4874060-606c-419f-b684-64fe20e237e7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-11A TCGA-BH-A0H3-11A-12D-A12Q-09 e4874060-606c-419f-b684-64fe20e237e7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0H3 TCGA-BH-A0H3-11A TCGA-BH-A0H3-11A-12W-A14O-09 4340da28-792b-4254-8e81-db00854ce8f5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21D-A10X-02 9393e7b1-5dd5-4128-a611-2d242f6eb842 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21D-A10Y-09 44498a74-763a-4b7d-8b94-16c815ab8df5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21D-A10Y-09 44498a74-763a-4b7d-8b94-16c815ab8df5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21D-A111-01 faaa02ff-b4f1-4f4d-be66-1254bd2c7403 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21D-A111-01 faaa02ff-b4f1-4f4d-be66-1254bd2c7403 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G05_735028.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21D-A111-01 faaa02ff-b4f1-4f4d-be66-1254bd2c7403 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G05_735028.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21D-A111-01 faaa02ff-b4f1-4f4d-be66-1254bd2c7403 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G05_735028.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21D-A111-01 faaa02ff-b4f1-4f4d-be66-1254bd2c7403 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G05_735028.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21D-A111-01 faaa02ff-b4f1-4f4d-be66-1254bd2c7403 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G05_735028.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21D-A111-01 faaa02ff-b4f1-4f4d-be66-1254bd2c7403 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G05_735028.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21D-A111-01 faaa02ff-b4f1-4f4d-be66-1254bd2c7403 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G05_735028.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21D-A111-01 faaa02ff-b4f1-4f4d-be66-1254bd2c7403 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G05_735028.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21D-A112-05 95605155-df63-4716-9b29-4a3df35131b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21D-A112-05 95605155-df63-4716-9b29-4a3df35131b2 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-BH-A0H5-01A-21D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21D-A112-05 95605155-df63-4716-9b29-4a3df35131b2 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-BH-A0H5-01A-21D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21D-A112-05 95605155-df63-4716-9b29-4a3df35131b2 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-BH-A0H5-01A-21D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21R-A114-13 5499a834-e924-4a7e-9e2e-4245f8658cd9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21R-A114-13 5499a834-e924-4a7e-9e2e-4245f8658cd9 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0H5-01A-21R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21R-A114-13 5499a834-e924-4a7e-9e2e-4245f8658cd9 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0H5-01A-21R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21R-A115-07 e5378cd0-4045-4afe-8157-7187b3d294ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21R-A115-07 e5378cd0-4045-4afe-8157-7187b3d294ef Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012744_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21R-A115-07 e5378cd0-4045-4afe-8157-7187b3d294ef Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012744_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21R-A115-07 e5378cd0-4045-4afe-8157-7187b3d294ef Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012744_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21R-A115-07 e5378cd0-4045-4afe-8157-7187b3d294ef RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420513.TCGA-BH-A0H5-01A-21R-A115-07.110608_UNC11-SN627_0103_BD0CVVABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21R-A115-07 e5378cd0-4045-4afe-8157-7187b3d294ef RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420515.TCGA-BH-A0H5-01A-21R-A115-07.110608_UNC11-SN627_0103_BD0CVVABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21R-A115-07 e5378cd0-4045-4afe-8157-7187b3d294ef RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420594.TCGA-BH-A0H5-01A-21R-A115-07.110608_UNC11-SN627_0103_BD0CVVABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-01A TCGA-BH-A0H5-01A-21W-A12T-09 0bd99491-acc1-4de1-bd3b-43ffca9afd37 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-10A TCGA-BH-A0H5-10A-01D-A10Z-02 1633f47a-38f0-4d75-8ea8-47af3bc84a73 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-10A TCGA-BH-A0H5-10A-01D-A110-09 5e039180-7cbb-44b6-bc05-6e11e7393ebe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-10A TCGA-BH-A0H5-10A-01D-A110-09 5e039180-7cbb-44b6-bc05-6e11e7393ebe Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-10A TCGA-BH-A0H5-10A-01D-A113-01 f0fa0a1f-1d00-40bb-92de-0bc60bdd31f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-10A TCGA-BH-A0H5-10A-01D-A113-01 f0fa0a1f-1d00-40bb-92de-0bc60bdd31f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C05_735060.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0H5 TCGA-BH-A0H5-10A TCGA-BH-A0H5-10A-01D-A113-01 f0fa0a1f-1d00-40bb-92de-0bc60bdd31f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C05_735060.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-10A TCGA-BH-A0H5-10A-01D-A113-01 f0fa0a1f-1d00-40bb-92de-0bc60bdd31f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C05_735060.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-10A TCGA-BH-A0H5-10A-01D-A113-01 f0fa0a1f-1d00-40bb-92de-0bc60bdd31f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C05_735060.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-10A TCGA-BH-A0H5-10A-01D-A113-01 f0fa0a1f-1d00-40bb-92de-0bc60bdd31f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C05_735060.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-10A TCGA-BH-A0H5-10A-01D-A113-01 f0fa0a1f-1d00-40bb-92de-0bc60bdd31f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C05_735060.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-10A TCGA-BH-A0H5-10A-01D-A113-01 f0fa0a1f-1d00-40bb-92de-0bc60bdd31f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C05_735060.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-10A TCGA-BH-A0H5-10A-01D-A113-01 f0fa0a1f-1d00-40bb-92de-0bc60bdd31f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_C05_735060.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-10A TCGA-BH-A0H5-10A-01W-A12U-09 6e69c60c-9fe5-48bb-8d94-20ea3865816b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62D-A10X-02 92192685-5567-4e71-b11b-9580bbc97c17 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62D-A10Y-09 6560af9c-0c1a-4659-b3ec-7a8dac4582f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62D-A10Y-09 6560af9c-0c1a-4659-b3ec-7a8dac4582f7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62D-A111-01 eb0c695d-73ae-4ef3-a443-da905d2c0476 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62D-A111-01 eb0c695d-73ae-4ef3-a443-da905d2c0476 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G07_735162.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62D-A111-01 eb0c695d-73ae-4ef3-a443-da905d2c0476 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G07_735162.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62D-A111-01 eb0c695d-73ae-4ef3-a443-da905d2c0476 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G07_735162.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62D-A111-01 eb0c695d-73ae-4ef3-a443-da905d2c0476 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G07_735162.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62D-A111-01 eb0c695d-73ae-4ef3-a443-da905d2c0476 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G07_735162.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62D-A111-01 eb0c695d-73ae-4ef3-a443-da905d2c0476 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G07_735162.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62D-A111-01 eb0c695d-73ae-4ef3-a443-da905d2c0476 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G07_735162.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62D-A111-01 eb0c695d-73ae-4ef3-a443-da905d2c0476 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/URAEI_p_TCGASNP_b85_N_GenomeWideSNP_6_G07_735162.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62D-A112-05 da84d5a1-f8e9-4719-82fc-5b84252558a5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62D-A112-05 da84d5a1-f8e9-4719-82fc-5b84252558a5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-BH-A0H5-11A-62D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62D-A112-05 da84d5a1-f8e9-4719-82fc-5b84252558a5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-BH-A0H5-11A-62D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62D-A112-05 da84d5a1-f8e9-4719-82fc-5b84252558a5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-BH-A0H5-11A-62D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62R-A114-13 79e83b06-fb75-43f3-930e-72e17e69b631 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62R-A114-13 79e83b06-fb75-43f3-930e-72e17e69b631 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0H5-11A-62R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62R-A114-13 79e83b06-fb75-43f3-930e-72e17e69b631 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0H5-11A-62R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62R-A115-07 fe1a74fd-c9b4-405b-86a7-61bcb75f825d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62R-A115-07 fe1a74fd-c9b4-405b-86a7-61bcb75f825d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012761_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62R-A115-07 fe1a74fd-c9b4-405b-86a7-61bcb75f825d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012761_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62R-A115-07 fe1a74fd-c9b4-405b-86a7-61bcb75f825d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012761_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62R-A115-07 fe1a74fd-c9b4-405b-86a7-61bcb75f825d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420372.TCGA-BH-A0H5-11A-62R-A115-07.110608_UNC11-SN627_0103_BD0CVVABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62R-A115-07 fe1a74fd-c9b4-405b-86a7-61bcb75f825d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420373.TCGA-BH-A0H5-11A-62R-A115-07.110608_UNC11-SN627_0103_BD0CVVABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62R-A115-07 fe1a74fd-c9b4-405b-86a7-61bcb75f825d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420404.TCGA-BH-A0H5-11A-62R-A115-07.110608_UNC11-SN627_0103_BD0CVVABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0H5 TCGA-BH-A0H5-11A TCGA-BH-A0H5-11A-62W-A12T-09 642efbbd-42ed-4ecc-af03-77e742ddadbb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21D-A058-05 b1ef855e-993a-40d2-b923-23a2b451b70e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21D-A059-01 7cb2d031-fc42-48ac-b6f0-88fe60245c2e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21D-A059-01 7cb2d031-fc42-48ac-b6f0-88fe60245c2e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C08_697054.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21D-A059-01 7cb2d031-fc42-48ac-b6f0-88fe60245c2e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C08_697054.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21D-A059-01 7cb2d031-fc42-48ac-b6f0-88fe60245c2e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C08_697054.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21D-A059-01 7cb2d031-fc42-48ac-b6f0-88fe60245c2e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C08_697054.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21D-A059-01 7cb2d031-fc42-48ac-b6f0-88fe60245c2e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C08_697054.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21D-A059-01 7cb2d031-fc42-48ac-b6f0-88fe60245c2e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C08_697054.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21D-A059-01 7cb2d031-fc42-48ac-b6f0-88fe60245c2e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C08_697054.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21D-A059-01 7cb2d031-fc42-48ac-b6f0-88fe60245c2e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C08_697054.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21D-A060-02 57d73bc9-950e-42a3-b9fb-6045117112b7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21D-A074-08 a94e084a-9fa4-4525-9f3b-1abbb37fadad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21D-A075-09 4535828d-6360-4646-a462-667db79d7989 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21D-A10P-05 3b3d395e-584d-4798-a926-6425218b0c1b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21D-A10P-05 3b3d395e-584d-4798-a926-6425218b0c1b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486019_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21D-A10P-05 3b3d395e-584d-4798-a926-6425218b0c1b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486019_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21D-A10P-05 3b3d395e-584d-4798-a926-6425218b0c1b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0H6-01A-21D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21D-A10P-05 3b3d395e-584d-4798-a926-6425218b0c1b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0H6-01A-21D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21R-A056-07 f7e26041-2b2f-45ea-8da9-5a0d5bf25781 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21R-A056-07 f7e26041-2b2f-45ea-8da9-5a0d5bf25781 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012202_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21R-A056-07 f7e26041-2b2f-45ea-8da9-5a0d5bf25781 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012202_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21R-A056-07 f7e26041-2b2f-45ea-8da9-5a0d5bf25781 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012202_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21R-A056-07 f7e26041-2b2f-45ea-8da9-5a0d5bf25781 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477965.TCGA-BH-A0H6-01A-21R-A056-07.110325_UNC11-SN627_0071_BB042MABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21R-A056-07 f7e26041-2b2f-45ea-8da9-5a0d5bf25781 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477988.TCGA-BH-A0H6-01A-21R-A056-07.110325_UNC11-SN627_0071_BB042MABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21R-A056-07 f7e26041-2b2f-45ea-8da9-5a0d5bf25781 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478022.TCGA-BH-A0H6-01A-21R-A056-07.110325_UNC11-SN627_0071_BB042MABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21R-A057-13 d210e465-a5d7-46e2-94f1-5d7957151cf1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21R-A057-13 d210e465-a5d7-46e2-94f1-5d7957151cf1 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0H6-01A-21R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21R-A057-13 d210e465-a5d7-46e2-94f1-5d7957151cf1 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0H6-01A-21R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21W-A070-08 0c6fd765-82c5-4480-9f72-77cdb64f9ae3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21W-A071-09 bbed00d2-9791-464d-a1ba-28fd56a0504e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21W-A071-09 bbed00d2-9791-464d-a1ba-28fd56a0504e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21X-A072-08 a66ccd10-f88b-4c80-8759-97d31c7a73b3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-01A TCGA-BH-A0H6-01A-21X-A073-09 99049185-f01c-42e7-bdf1-e0a7030d7a73 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-10A TCGA-BH-A0H6-10A-01D-A059-01 759e7a9b-7903-4f28-9949-79ad61050bce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-10A TCGA-BH-A0H6-10A-01D-A059-01 759e7a9b-7903-4f28-9949-79ad61050bce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F05_697134.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0H6 TCGA-BH-A0H6-10A TCGA-BH-A0H6-10A-01D-A059-01 759e7a9b-7903-4f28-9949-79ad61050bce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F05_697134.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-10A TCGA-BH-A0H6-10A-01D-A059-01 759e7a9b-7903-4f28-9949-79ad61050bce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F05_697134.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-10A TCGA-BH-A0H6-10A-01D-A059-01 759e7a9b-7903-4f28-9949-79ad61050bce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F05_697134.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-10A TCGA-BH-A0H6-10A-01D-A059-01 759e7a9b-7903-4f28-9949-79ad61050bce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F05_697134.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-10A TCGA-BH-A0H6-10A-01D-A059-01 759e7a9b-7903-4f28-9949-79ad61050bce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F05_697134.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-10A TCGA-BH-A0H6-10A-01D-A059-01 759e7a9b-7903-4f28-9949-79ad61050bce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F05_697134.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-10A TCGA-BH-A0H6-10A-01D-A059-01 759e7a9b-7903-4f28-9949-79ad61050bce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F05_697134.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-10A TCGA-BH-A0H6-10A-01D-A060-02 3ddccfec-a269-41ab-b274-31e992f98878 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-10A TCGA-BH-A0H6-10A-01D-A074-08 9b87c3a5-22b8-4dc5-b5d7-530350c7ab06 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-10A TCGA-BH-A0H6-10A-01D-A075-09 58b92d21-e8e3-493f-9bfe-55c11ae31e9c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-10A TCGA-BH-A0H6-10A-01W-A070-08 d7889b32-f592-4c11-a847-d7f49eca299e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-10A TCGA-BH-A0H6-10A-01W-A071-09 6ddf4ce5-5956-4394-af6e-f840573ac67e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-10A TCGA-BH-A0H6-10A-01W-A071-09 6ddf4ce5-5956-4394-af6e-f840573ac67e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-10A TCGA-BH-A0H6-10A-01X-A072-08 bcc137aa-6647-4c9d-94a8-585ed20b8746 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H6 TCGA-BH-A0H6-10A TCGA-BH-A0H6-10A-01X-A073-09 6e67bd26-6f47-4d9b-ad62-6b40761315c2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13D-A058-05 2d4a70e7-9955-47dc-a866-ca50a9d80481 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13D-A059-01 be2892ed-6564-4c99-ad83-025414acbe76 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13D-A059-01 be2892ed-6564-4c99-ad83-025414acbe76 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C11_697162.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13D-A059-01 be2892ed-6564-4c99-ad83-025414acbe76 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C11_697162.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13D-A059-01 be2892ed-6564-4c99-ad83-025414acbe76 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C11_697162.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13D-A059-01 be2892ed-6564-4c99-ad83-025414acbe76 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C11_697162.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13D-A059-01 be2892ed-6564-4c99-ad83-025414acbe76 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C11_697162.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13D-A059-01 be2892ed-6564-4c99-ad83-025414acbe76 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C11_697162.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13D-A059-01 be2892ed-6564-4c99-ad83-025414acbe76 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C11_697162.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13D-A059-01 be2892ed-6564-4c99-ad83-025414acbe76 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_C11_697162.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13D-A060-02 e0e60b71-1efa-4896-b89f-d05974cdcf48 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13D-A074-08 4be03213-9d49-45fe-8beb-19ede624ae8e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13D-A075-09 3e1d5b6e-aa12-4af2-b63d-cd6ca40ec8ff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13D-A10P-05 cbdb70da-82b6-4484-a197-65d717fab1db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13D-A10P-05 cbdb70da-82b6-4484-a197-65d717fab1db DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486021_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13D-A10P-05 cbdb70da-82b6-4484-a197-65d717fab1db DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486021_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13D-A10P-05 cbdb70da-82b6-4484-a197-65d717fab1db DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0H7-01A-13D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13D-A10P-05 cbdb70da-82b6-4484-a197-65d717fab1db DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0H7-01A-13D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13R-A056-07 5969d3bb-19fb-4bda-9483-db4791257b95 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13R-A056-07 5969d3bb-19fb-4bda-9483-db4791257b95 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012208_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13R-A056-07 5969d3bb-19fb-4bda-9483-db4791257b95 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012208_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13R-A056-07 5969d3bb-19fb-4bda-9483-db4791257b95 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012208_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13R-A056-07 5969d3bb-19fb-4bda-9483-db4791257b95 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451325.TCGA-BH-A0H7-01A-13R-A056-07.110801_UNC13-SN749_0089_BD0DT6ABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13R-A056-07 5969d3bb-19fb-4bda-9483-db4791257b95 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451333.TCGA-BH-A0H7-01A-13R-A056-07.110801_UNC13-SN749_0089_BD0DT6ABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13R-A056-07 5969d3bb-19fb-4bda-9483-db4791257b95 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451468.TCGA-BH-A0H7-01A-13R-A056-07.110801_UNC13-SN749_0089_BD0DT6ABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13R-A057-13 0641ef69-4a84-439e-bfea-7d532515f196 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13R-A057-13 0641ef69-4a84-439e-bfea-7d532515f196 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0H7-01A-13R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13R-A057-13 0641ef69-4a84-439e-bfea-7d532515f196 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0H7-01A-13R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13W-A070-08 c4e3fbdc-573e-4f9e-97b1-acc44dd04818 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13W-A071-09 8623830e-3fdd-4707-83e9-5f528105aa55 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13W-A071-09 8623830e-3fdd-4707-83e9-5f528105aa55 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13X-A072-08 270cce87-845a-4bf0-8111-915695cabbc2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-01A TCGA-BH-A0H7-01A-13X-A073-09 d88b637b-b34d-4a45-8197-d1d0a9f78d2b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-10A TCGA-BH-A0H7-10A-01D-A059-01 600c9a77-047f-44b3-b9d1-be5581e54805 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-10A TCGA-BH-A0H7-10A-01D-A059-01 600c9a77-047f-44b3-b9d1-be5581e54805 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H01_697038.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0H7 TCGA-BH-A0H7-10A TCGA-BH-A0H7-10A-01D-A059-01 600c9a77-047f-44b3-b9d1-be5581e54805 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H01_697038.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-10A TCGA-BH-A0H7-10A-01D-A059-01 600c9a77-047f-44b3-b9d1-be5581e54805 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H01_697038.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-10A TCGA-BH-A0H7-10A-01D-A059-01 600c9a77-047f-44b3-b9d1-be5581e54805 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H01_697038.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-10A TCGA-BH-A0H7-10A-01D-A059-01 600c9a77-047f-44b3-b9d1-be5581e54805 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H01_697038.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-10A TCGA-BH-A0H7-10A-01D-A059-01 600c9a77-047f-44b3-b9d1-be5581e54805 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H01_697038.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-10A TCGA-BH-A0H7-10A-01D-A059-01 600c9a77-047f-44b3-b9d1-be5581e54805 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H01_697038.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-10A TCGA-BH-A0H7-10A-01D-A059-01 600c9a77-047f-44b3-b9d1-be5581e54805 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H01_697038.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-10A TCGA-BH-A0H7-10A-01D-A060-02 aa3e5150-7eff-4837-9946-efecbee42e92 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-10A TCGA-BH-A0H7-10A-01D-A074-08 7f9a71af-0917-4a44-b765-62e5cfc56135 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-10A TCGA-BH-A0H7-10A-01D-A075-09 323d74bb-13b7-4931-b7cd-a9752a638648 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-10A TCGA-BH-A0H7-10A-01W-A070-08 58bca379-bc72-47a6-bdbb-5cc134844acb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-10A TCGA-BH-A0H7-10A-01W-A071-09 bd560d56-fd13-4213-8e29-2a99fee0a055 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-10A TCGA-BH-A0H7-10A-01W-A071-09 bd560d56-fd13-4213-8e29-2a99fee0a055 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-10A TCGA-BH-A0H7-10A-01X-A072-08 452903d0-c472-402b-afda-5fa0025f5ad6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-10A TCGA-BH-A0H7-10A-01X-A073-09 a7722f9b-021c-462d-9714-9e91ac80158e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13D-A091-02 e77a997e-c20b-4f0f-ad2e-d132d465b369 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13D-A092-01 3da1b2c6-be29-4451-bb4f-2344c22afd3c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13D-A092-01 3da1b2c6-be29-4451-bb4f-2344c22afd3c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G01_729680.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13D-A092-01 3da1b2c6-be29-4451-bb4f-2344c22afd3c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G01_729680.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13D-A092-01 3da1b2c6-be29-4451-bb4f-2344c22afd3c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G01_729680.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13D-A092-01 3da1b2c6-be29-4451-bb4f-2344c22afd3c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G01_729680.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13D-A092-01 3da1b2c6-be29-4451-bb4f-2344c22afd3c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G01_729680.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13D-A092-01 3da1b2c6-be29-4451-bb4f-2344c22afd3c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G01_729680.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13D-A092-01 3da1b2c6-be29-4451-bb4f-2344c22afd3c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G01_729680.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13D-A092-01 3da1b2c6-be29-4451-bb4f-2344c22afd3c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G01_729680.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13D-A093-05 b7e468c0-3848-4a45-859e-bbfda3d943c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13D-A100-09 e7c13dc3-1aac-402e-9a42-523b29c2755b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13D-A10Q-05 6dfbf8d6-4769-4183-b712-b62411a86757 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13D-A10Q-05 6dfbf8d6-4769-4183-b712-b62411a86757 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486013_R05C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13D-A10Q-05 6dfbf8d6-4769-4183-b712-b62411a86757 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486013_R05C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13D-A10Q-05 6dfbf8d6-4769-4183-b712-b62411a86757 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0H7-11A-13D-A10Q-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13D-A10Q-05 6dfbf8d6-4769-4183-b712-b62411a86757 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0H7-11A-13D-A10Q-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13R-A089-07 6136a15e-6c8f-44bc-85c2-c7cbf675cab0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13R-A089-07 6136a15e-6c8f-44bc-85c2-c7cbf675cab0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012678_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 61 02-NOV-10 12.30.07.283000000 AM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13R-A089-07 6136a15e-6c8f-44bc-85c2-c7cbf675cab0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012678_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 61 02-NOV-10 12.25.38.097000000 AM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13R-A089-07 6136a15e-6c8f-44bc-85c2-c7cbf675cab0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012678_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 61 02-NOV-10 12.26.20.805000000 AM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13R-A089-07 6136a15e-6c8f-44bc-85c2-c7cbf675cab0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445932.TCGA-BH-A0H7-11A-13R-A089-07.110824_UNC13-SN749_0101_BB0AHBABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13R-A089-07 6136a15e-6c8f-44bc-85c2-c7cbf675cab0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445937.TCGA-BH-A0H7-11A-13R-A089-07.110824_UNC13-SN749_0101_BB0AHBABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13R-A089-07 6136a15e-6c8f-44bc-85c2-c7cbf675cab0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445961.TCGA-BH-A0H7-11A-13R-A089-07.110824_UNC13-SN749_0101_BB0AHBABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13R-A090-13 2ba66b6d-1a08-4836-98ed-8df52e00fd59 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13R-A090-13 2ba66b6d-1a08-4836-98ed-8df52e00fd59 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0H7-11A-13R-A090-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13R-A090-13 2ba66b6d-1a08-4836-98ed-8df52e00fd59 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0H7-11A-13R-A090-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13W-A100-09 51420539-3e3b-4b35-8041-3ec47b0adeea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13W-A100-09 51420539-3e3b-4b35-8041-3ec47b0adeea Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0H7 TCGA-BH-A0H7-11A TCGA-BH-A0H7-11A-13X-A100-09 f965d762-bda3-48e1-82ed-f5e1ca2cafce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11D-A058-05 801efea3-50ed-46c8-b140-982068d591a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11D-A059-01 2db50b93-b544-42c8-9c6b-39bcfe870324 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11D-A059-01 2db50b93-b544-42c8-9c6b-39bcfe870324 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D05_697090.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11D-A059-01 2db50b93-b544-42c8-9c6b-39bcfe870324 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D05_697090.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11D-A059-01 2db50b93-b544-42c8-9c6b-39bcfe870324 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D05_697090.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11D-A059-01 2db50b93-b544-42c8-9c6b-39bcfe870324 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D05_697090.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11D-A059-01 2db50b93-b544-42c8-9c6b-39bcfe870324 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D05_697090.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11D-A059-01 2db50b93-b544-42c8-9c6b-39bcfe870324 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D05_697090.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11D-A059-01 2db50b93-b544-42c8-9c6b-39bcfe870324 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D05_697090.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11D-A059-01 2db50b93-b544-42c8-9c6b-39bcfe870324 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D05_697090.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11D-A060-02 6b45635e-6048-4121-9076-f1d87725d738 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11D-A074-08 2cdd3009-8d1e-4ced-b02e-9b6c14d641b3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11D-A075-09 e8a56b6d-0482-4b51-938a-2741d9d3cc64 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11D-A10P-05 ec8edb43-9f8c-48ad-8cce-791348f88936 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11D-A10P-05 ec8edb43-9f8c-48ad-8cce-791348f88936 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486021_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11D-A10P-05 ec8edb43-9f8c-48ad-8cce-791348f88936 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486021_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11D-A10P-05 ec8edb43-9f8c-48ad-8cce-791348f88936 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0H9-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11D-A10P-05 ec8edb43-9f8c-48ad-8cce-791348f88936 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0H9-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11R-A056-07 827431d3-e25a-45b6-9b0f-5732501e2a5b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11R-A056-07 827431d3-e25a-45b6-9b0f-5732501e2a5b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012481_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11R-A056-07 827431d3-e25a-45b6-9b0f-5732501e2a5b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012481_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11R-A056-07 827431d3-e25a-45b6-9b0f-5732501e2a5b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012481_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11R-A056-07 827431d3-e25a-45b6-9b0f-5732501e2a5b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477952.TCGA-BH-A0H9-01A-11R-A056-07.110325_UNC11-SN627_0071_BB042MABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11R-A056-07 827431d3-e25a-45b6-9b0f-5732501e2a5b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477996.TCGA-BH-A0H9-01A-11R-A056-07.110325_UNC11-SN627_0071_BB042MABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11R-A056-07 827431d3-e25a-45b6-9b0f-5732501e2a5b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477997.TCGA-BH-A0H9-01A-11R-A056-07.110325_UNC11-SN627_0071_BB042MABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11R-A057-13 1620a016-257f-44d9-a848-e95b7edddef0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11R-A057-13 1620a016-257f-44d9-a848-e95b7edddef0 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0H9-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11R-A057-13 1620a016-257f-44d9-a848-e95b7edddef0 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0H9-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11W-A070-08 8fabbfb0-8120-45cd-b483-4236154a28a7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11W-A071-09 6be3dccb-12f8-4ef5-962f-21a0b26f81ad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11W-A071-09 6be3dccb-12f8-4ef5-962f-21a0b26f81ad Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11X-A072-08 a4123b72-3f19-4e79-ae95-6d7094c404d4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-01A TCGA-BH-A0H9-01A-11X-A073-09 18a26239-f8f0-4056-9dd2-4787b07cc827 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-10A TCGA-BH-A0H9-10A-01D-A059-01 51bed1ad-5828-4ee5-9ecd-a77da6d64f69 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-10A TCGA-BH-A0H9-10A-01D-A059-01 51bed1ad-5828-4ee5-9ecd-a77da6d64f69 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D09_697184.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0H9 TCGA-BH-A0H9-10A TCGA-BH-A0H9-10A-01D-A059-01 51bed1ad-5828-4ee5-9ecd-a77da6d64f69 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D09_697184.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-10A TCGA-BH-A0H9-10A-01D-A059-01 51bed1ad-5828-4ee5-9ecd-a77da6d64f69 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D09_697184.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-10A TCGA-BH-A0H9-10A-01D-A059-01 51bed1ad-5828-4ee5-9ecd-a77da6d64f69 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D09_697184.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-10A TCGA-BH-A0H9-10A-01D-A059-01 51bed1ad-5828-4ee5-9ecd-a77da6d64f69 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D09_697184.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-10A TCGA-BH-A0H9-10A-01D-A059-01 51bed1ad-5828-4ee5-9ecd-a77da6d64f69 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D09_697184.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-10A TCGA-BH-A0H9-10A-01D-A059-01 51bed1ad-5828-4ee5-9ecd-a77da6d64f69 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D09_697184.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-10A TCGA-BH-A0H9-10A-01D-A059-01 51bed1ad-5828-4ee5-9ecd-a77da6d64f69 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_D09_697184.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-10A TCGA-BH-A0H9-10A-01D-A060-02 5965a2b7-c27f-4a5c-8623-16717fb456ab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-10A TCGA-BH-A0H9-10A-01D-A074-08 e8986420-5b65-476a-8fd9-8e8e064b8aae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-10A TCGA-BH-A0H9-10A-01D-A075-09 5717cc03-c848-4dd3-a502-5cff5a5ca16f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-10A TCGA-BH-A0H9-10A-01W-A070-08 17156a10-0f10-40df-b242-901327b93ec3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-10A TCGA-BH-A0H9-10A-01W-A071-09 71bbe21d-80fd-49be-ae4b-041f0ed1e617 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-10A TCGA-BH-A0H9-10A-01W-A071-09 71bbe21d-80fd-49be-ae4b-041f0ed1e617 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-10A TCGA-BH-A0H9-10A-01X-A072-08 23353c9d-8753-45f7-b642-67feb08411f2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-10A TCGA-BH-A0H9-10A-01X-A073-09 f473e4c7-2e81-42ac-8bf9-82050a641a7e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-11A TCGA-BH-A0H9-11A-22D-A092-01 bfd1225e-935b-44e1-85e9-f9dfa447ea21 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-11A TCGA-BH-A0H9-11A-22D-A092-01 bfd1225e-935b-44e1-85e9-f9dfa447ea21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G02_729558.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0H9 TCGA-BH-A0H9-11A TCGA-BH-A0H9-11A-22D-A092-01 bfd1225e-935b-44e1-85e9-f9dfa447ea21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G02_729558.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-11A TCGA-BH-A0H9-11A-22D-A092-01 bfd1225e-935b-44e1-85e9-f9dfa447ea21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G02_729558.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-11A TCGA-BH-A0H9-11A-22D-A092-01 bfd1225e-935b-44e1-85e9-f9dfa447ea21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G02_729558.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-11A TCGA-BH-A0H9-11A-22D-A092-01 bfd1225e-935b-44e1-85e9-f9dfa447ea21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G02_729558.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-11A TCGA-BH-A0H9-11A-22D-A092-01 bfd1225e-935b-44e1-85e9-f9dfa447ea21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G02_729558.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-11A TCGA-BH-A0H9-11A-22D-A092-01 bfd1225e-935b-44e1-85e9-f9dfa447ea21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G02_729558.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-11A TCGA-BH-A0H9-11A-22D-A092-01 bfd1225e-935b-44e1-85e9-f9dfa447ea21 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G02_729558.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-11A TCGA-BH-A0H9-11A-22D-A093-05 064b9e6d-f329-47d2-8f51-ae2a8dfa2ae7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-11A TCGA-BH-A0H9-11A-22D-A093-05 064b9e6d-f329-47d2-8f51-ae2a8dfa2ae7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486025_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-11A TCGA-BH-A0H9-11A-22D-A093-05 064b9e6d-f329-47d2-8f51-ae2a8dfa2ae7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486025_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-11A TCGA-BH-A0H9-11A-22D-A093-05 064b9e6d-f329-47d2-8f51-ae2a8dfa2ae7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0H9-11A-22D-A093-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-11A TCGA-BH-A0H9-11A-22D-A093-05 064b9e6d-f329-47d2-8f51-ae2a8dfa2ae7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0H9-11A-22D-A093-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-11A TCGA-BH-A0H9-11A-22D-A10E-09 071c5ad5-b450-47fd-afde-b9568cdbbe2f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-11A TCGA-BH-A0H9-11A-22R-A089-07 18dbd44e-b4e8-49ad-95fd-1dcfe1191315 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-11A TCGA-BH-A0H9-11A-22R-A089-07 18dbd44e-b4e8-49ad-95fd-1dcfe1191315 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012676_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 61 02-NOV-10 12.30.07.283000000 AM TCGA-BH-A0H9 TCGA-BH-A0H9-11A TCGA-BH-A0H9-11A-22R-A089-07 18dbd44e-b4e8-49ad-95fd-1dcfe1191315 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012676_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 61 02-NOV-10 12.25.38.097000000 AM TCGA-BH-A0H9 TCGA-BH-A0H9-11A TCGA-BH-A0H9-11A-22R-A089-07 18dbd44e-b4e8-49ad-95fd-1dcfe1191315 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012676_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 61 02-NOV-10 12.26.20.805000000 AM TCGA-BH-A0H9 TCGA-BH-A0H9-11A TCGA-BH-A0H9-11A-22W-A10F-09 50589b20-69ac-484a-9fe8-d988a891d86e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-11A TCGA-BH-A0H9-11A-22W-A10F-09 50589b20-69ac-484a-9fe8-d988a891d86e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0H9 TCGA-BH-A0H9-11A TCGA-BH-A0H9-11A-22X-A10F-09 1ae637d5-930e-4654-81c2-ff63ccbe2282 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0H9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11D-A12M-02 0876c08a-ba1c-490a-916d-240d8adcca66 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11D-A12N-01 9c593bef-cf0b-42a4-9cb1-02d9d13b16dd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11D-A12N-01 9c593bef-cf0b-42a4-9cb1-02d9d13b16dd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E08_748054.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11D-A12N-01 9c593bef-cf0b-42a4-9cb1-02d9d13b16dd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E08_748054.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11D-A12N-01 9c593bef-cf0b-42a4-9cb1-02d9d13b16dd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E08_748054.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11D-A12N-01 9c593bef-cf0b-42a4-9cb1-02d9d13b16dd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E08_748054.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11D-A12N-01 9c593bef-cf0b-42a4-9cb1-02d9d13b16dd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E08_748054.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11D-A12N-01 9c593bef-cf0b-42a4-9cb1-02d9d13b16dd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E08_748054.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11D-A12N-01 9c593bef-cf0b-42a4-9cb1-02d9d13b16dd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E08_748054.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11D-A12N-01 9c593bef-cf0b-42a4-9cb1-02d9d13b16dd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E08_748054.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11D-A12Q-09 95f2ee35-a485-4995-8205-01623d97da2d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11D-A12Q-09 95f2ee35-a485-4995-8205-01623d97da2d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11D-A12R-05 d7bfacd7-f5b0-4552-8020-b49d7ced0120 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11D-A12R-05 d7bfacd7-f5b0-4552-8020-b49d7ced0120 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324070_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11D-A12R-05 d7bfacd7-f5b0-4552-8020-b49d7ced0120 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324070_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11D-A12R-05 d7bfacd7-f5b0-4552-8020-b49d7ced0120 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-BH-A0HA-01A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11D-A12R-05 d7bfacd7-f5b0-4552-8020-b49d7ced0120 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-BH-A0HA-01A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11R-A12O-13 e724a73b-ac69-47a7-8ddc-d62fda9c1d95 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11R-A12O-13 e724a73b-ac69-47a7-8ddc-d62fda9c1d95 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0HA-01A-11R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11R-A12O-13 e724a73b-ac69-47a7-8ddc-d62fda9c1d95 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0HA-01A-11R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11R-A12P-07 cffc0fe5-533f-46f8-a54a-2e09c392767d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11R-A12P-07 cffc0fe5-533f-46f8-a54a-2e09c392767d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013069_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11R-A12P-07 cffc0fe5-533f-46f8-a54a-2e09c392767d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013069_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11R-A12P-07 cffc0fe5-533f-46f8-a54a-2e09c392767d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013069_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11R-A12P-07 cffc0fe5-533f-46f8-a54a-2e09c392767d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_435567.TCGA-BH-A0HA-01A-11R-A12P-07.110801_UNC10-SN254_0250_AC01YCABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11R-A12P-07 cffc0fe5-533f-46f8-a54a-2e09c392767d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_435571.TCGA-BH-A0HA-01A-11R-A12P-07.110801_UNC10-SN254_0250_AC01YCABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11R-A12P-07 cffc0fe5-533f-46f8-a54a-2e09c392767d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_435700.TCGA-BH-A0HA-01A-11R-A12P-07.110801_UNC10-SN254_0250_AC01YCABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-01A TCGA-BH-A0HA-01A-11W-A14O-09 54eec5d7-83cc-4a70-986f-c99e9ba1b648 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31D-A12M-02 665e93b4-0f74-4c46-8b50-c3b038dd0363 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31D-A12N-01 1618f8d3-bafa-47a0-bcbe-dd6d9c8cb877 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31D-A12N-01 1618f8d3-bafa-47a0-bcbe-dd6d9c8cb877 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C01_747962.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31D-A12N-01 1618f8d3-bafa-47a0-bcbe-dd6d9c8cb877 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C01_747962.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31D-A12N-01 1618f8d3-bafa-47a0-bcbe-dd6d9c8cb877 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C01_747962.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31D-A12N-01 1618f8d3-bafa-47a0-bcbe-dd6d9c8cb877 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C01_747962.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31D-A12N-01 1618f8d3-bafa-47a0-bcbe-dd6d9c8cb877 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C01_747962.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31D-A12N-01 1618f8d3-bafa-47a0-bcbe-dd6d9c8cb877 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C01_747962.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31D-A12N-01 1618f8d3-bafa-47a0-bcbe-dd6d9c8cb877 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C01_747962.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31D-A12N-01 1618f8d3-bafa-47a0-bcbe-dd6d9c8cb877 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C01_747962.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31D-A12Q-09 eb1421a0-3424-4a55-be66-9bea2d867c12 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31D-A12Q-09 eb1421a0-3424-4a55-be66-9bea2d867c12 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31D-A12R-05 2a898002-cc31-48d1-a371-adf2136bc7af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31D-A12R-05 2a898002-cc31-48d1-a371-adf2136bc7af DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324035_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31D-A12R-05 2a898002-cc31-48d1-a371-adf2136bc7af DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324035_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31D-A12R-05 2a898002-cc31-48d1-a371-adf2136bc7af DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-BH-A0HA-11A-31D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31D-A12R-05 2a898002-cc31-48d1-a371-adf2136bc7af DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-BH-A0HA-11A-31D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31R-A12O-13 9f61523a-2909-49ab-82fb-b9e94edef0c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31R-A12O-13 9f61523a-2909-49ab-82fb-b9e94edef0c8 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0HA-11A-31R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31R-A12O-13 9f61523a-2909-49ab-82fb-b9e94edef0c8 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0HA-11A-31R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31R-A12P-07 a521a6fa-da2b-48ef-94e8-3307030427b6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31R-A12P-07 a521a6fa-da2b-48ef-94e8-3307030427b6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013084_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31R-A12P-07 a521a6fa-da2b-48ef-94e8-3307030427b6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013084_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31R-A12P-07 a521a6fa-da2b-48ef-94e8-3307030427b6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013084_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31R-A12P-07 a521a6fa-da2b-48ef-94e8-3307030427b6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446108.TCGA-BH-A0HA-11A-31R-A12P-07.110824_UNC13-SN749_0098_AC03YVABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31R-A12P-07 a521a6fa-da2b-48ef-94e8-3307030427b6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446237.TCGA-BH-A0HA-11A-31R-A12P-07.110824_UNC13-SN749_0098_AC03YVABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31R-A12P-07 a521a6fa-da2b-48ef-94e8-3307030427b6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446255.TCGA-BH-A0HA-11A-31R-A12P-07.110824_UNC13-SN749_0098_AC03YVABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HA TCGA-BH-A0HA-11A TCGA-BH-A0HA-11A-31W-A14O-09 eb22bcf7-db31-4bf4-96ef-9d5e17d749c0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11D-A058-05 8bf4af9e-12ac-4c03-adf6-bf93b0c35151 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11D-A059-01 f413a46e-2b09-429d-8463-286cbcdad0b6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11D-A059-01 f413a46e-2b09-429d-8463-286cbcdad0b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B08_697166.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11D-A059-01 f413a46e-2b09-429d-8463-286cbcdad0b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B08_697166.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11D-A059-01 f413a46e-2b09-429d-8463-286cbcdad0b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B08_697166.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11D-A059-01 f413a46e-2b09-429d-8463-286cbcdad0b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B08_697166.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11D-A059-01 f413a46e-2b09-429d-8463-286cbcdad0b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B08_697166.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11D-A059-01 f413a46e-2b09-429d-8463-286cbcdad0b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B08_697166.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11D-A059-01 f413a46e-2b09-429d-8463-286cbcdad0b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B08_697166.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11D-A059-01 f413a46e-2b09-429d-8463-286cbcdad0b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_B08_697166.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11D-A060-02 49556237-d73f-4de9-b5d9-7169db7a53c5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11D-A074-08 cd54da46-b721-4170-8121-b52cde51aabf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11D-A075-09 1fa977e5-2bde-4515-9de9-ae8f63924215 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11D-A10P-05 1c1f5d5f-48ed-4486-a81b-f21d5292ad72 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11D-A10P-05 1c1f5d5f-48ed-4486-a81b-f21d5292ad72 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486021_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11D-A10P-05 1c1f5d5f-48ed-4486-a81b-f21d5292ad72 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486021_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11D-A10P-05 1c1f5d5f-48ed-4486-a81b-f21d5292ad72 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0HB-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11D-A10P-05 1c1f5d5f-48ed-4486-a81b-f21d5292ad72 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0HB-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11R-A056-07 67b214bc-ac5f-4993-9907-fe0e0398d4ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11R-A056-07 67b214bc-ac5f-4993-9907-fe0e0398d4ed Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012487_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11R-A056-07 67b214bc-ac5f-4993-9907-fe0e0398d4ed Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012487_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11R-A056-07 67b214bc-ac5f-4993-9907-fe0e0398d4ed Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012487_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11R-A056-07 67b214bc-ac5f-4993-9907-fe0e0398d4ed RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478001.TCGA-BH-A0HB-01A-11R-A056-07.110325_UNC11-SN627_0071_BB042MABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11R-A056-07 67b214bc-ac5f-4993-9907-fe0e0398d4ed RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478070.TCGA-BH-A0HB-01A-11R-A056-07.110325_UNC11-SN627_0071_BB042MABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11R-A056-07 67b214bc-ac5f-4993-9907-fe0e0398d4ed RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_478134.TCGA-BH-A0HB-01A-11R-A056-07.110325_UNC11-SN627_0071_BB042MABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11R-A057-13 0c8d2279-c90e-4e23-97ea-d80d6e68fa0f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11R-A057-13 0c8d2279-c90e-4e23-97ea-d80d6e68fa0f miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0HB-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11R-A057-13 0c8d2279-c90e-4e23-97ea-d80d6e68fa0f miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0HB-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11W-A070-08 f8859d6e-eec7-45bf-b957-d1f6ccb45afe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11W-A071-09 ed5f1077-62c1-43d8-8a27-56521bbdd8a5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11W-A071-09 ed5f1077-62c1-43d8-8a27-56521bbdd8a5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11X-A072-08 004c867a-73e0-4e7d-8c27-2462b648c722 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-01A TCGA-BH-A0HB-01A-11X-A073-09 847a1d7f-f845-4542-91af-981394e7f245 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-10A TCGA-BH-A0HB-10A-01D-A059-01 a6dce90f-e189-472f-9940-4235fb0919b4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-10A TCGA-BH-A0HB-10A-01D-A059-01 a6dce90f-e189-472f-9940-4235fb0919b4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F12_697082.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0HB TCGA-BH-A0HB-10A TCGA-BH-A0HB-10A-01D-A059-01 a6dce90f-e189-472f-9940-4235fb0919b4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F12_697082.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-10A TCGA-BH-A0HB-10A-01D-A059-01 a6dce90f-e189-472f-9940-4235fb0919b4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F12_697082.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-10A TCGA-BH-A0HB-10A-01D-A059-01 a6dce90f-e189-472f-9940-4235fb0919b4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F12_697082.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-10A TCGA-BH-A0HB-10A-01D-A059-01 a6dce90f-e189-472f-9940-4235fb0919b4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F12_697082.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-10A TCGA-BH-A0HB-10A-01D-A059-01 a6dce90f-e189-472f-9940-4235fb0919b4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F12_697082.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-10A TCGA-BH-A0HB-10A-01D-A059-01 a6dce90f-e189-472f-9940-4235fb0919b4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F12_697082.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-10A TCGA-BH-A0HB-10A-01D-A059-01 a6dce90f-e189-472f-9940-4235fb0919b4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_F12_697082.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-10A TCGA-BH-A0HB-10A-01D-A060-02 3f02ceb5-9b6c-453c-8a81-00d2b609b742 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-10A TCGA-BH-A0HB-10A-01D-A074-08 4549dcf6-c7fb-48ae-b079-f0b53ee971e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-10A TCGA-BH-A0HB-10A-01D-A075-09 f9a7ec6e-93b5-4da0-9afe-4b841a800263 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-10A TCGA-BH-A0HB-10A-01W-A070-08 3d7a982b-5869-4d91-b356-0ac20f070af6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-10A TCGA-BH-A0HB-10A-01W-A071-09 209f788f-fd3c-4b14-9e9e-c6d0be240654 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-10A TCGA-BH-A0HB-10A-01W-A071-09 209f788f-fd3c-4b14-9e9e-c6d0be240654 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-10A TCGA-BH-A0HB-10A-01X-A072-08 0589437f-9ac3-4639-a91d-2e8e6c2cce2f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HB TCGA-BH-A0HB-10A TCGA-BH-A0HB-10A-01X-A073-09 a45c52ff-ff2b-4109-8c05-d062f9adf6eb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11D-A058-05 fa7a4112-565e-4710-a98e-177f1c63363a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11D-A059-01 598d5706-eedb-4d5a-9048-4ac324573025 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11D-A059-01 598d5706-eedb-4d5a-9048-4ac324573025 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11D-A059-01 598d5706-eedb-4d5a-9048-4ac324573025 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11D-A059-01 598d5706-eedb-4d5a-9048-4ac324573025 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11D-A059-01 598d5706-eedb-4d5a-9048-4ac324573025 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11D-A059-01 598d5706-eedb-4d5a-9048-4ac324573025 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11D-A059-01 598d5706-eedb-4d5a-9048-4ac324573025 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11D-A059-01 598d5706-eedb-4d5a-9048-4ac324573025 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A05_697032.seg.data.txt'. TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11D-A060-02 9b7cbd13-f7c7-412b-a3ff-fc69556f3656 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11D-A074-08 29bd373e-7b9a-401a-b817-bd77ddb5fd4d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11D-A075-09 fe74e8fd-5223-4cd1-86bc-58d72d891f6c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11D-A10P-05 f2a19bf9-bd83-4573-a7a8-fcdab8c3f758 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11D-A10P-05 f2a19bf9-bd83-4573-a7a8-fcdab8c3f758 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486019_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11D-A10P-05 f2a19bf9-bd83-4573-a7a8-fcdab8c3f758 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486019_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11D-A10P-05 f2a19bf9-bd83-4573-a7a8-fcdab8c3f758 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0HF-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11D-A10P-05 f2a19bf9-bd83-4573-a7a8-fcdab8c3f758 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0HF-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11R-A056-07 5b92fd62-9fec-4b18-b7c3-50c88fa0d464 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11R-A056-07 5b92fd62-9fec-4b18-b7c3-50c88fa0d464 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012504_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11R-A056-07 5b92fd62-9fec-4b18-b7c3-50c88fa0d464 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012504_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11R-A056-07 5b92fd62-9fec-4b18-b7c3-50c88fa0d464 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012504_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11R-A056-07 5b92fd62-9fec-4b18-b7c3-50c88fa0d464 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477787.TCGA-BH-A0HF-01A-11R-A056-07.110325_UNC11-SN627_0071_BB042MABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11R-A056-07 5b92fd62-9fec-4b18-b7c3-50c88fa0d464 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477820.TCGA-BH-A0HF-01A-11R-A056-07.110325_UNC11-SN627_0071_BB042MABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11R-A056-07 5b92fd62-9fec-4b18-b7c3-50c88fa0d464 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_477914.TCGA-BH-A0HF-01A-11R-A056-07.110325_UNC11-SN627_0071_BB042MABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11R-A057-13 e8c71380-660a-43b0-8166-343e0ab47e21 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11R-A057-13 e8c71380-660a-43b0-8166-343e0ab47e21 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0HF-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11R-A057-13 e8c71380-660a-43b0-8166-343e0ab47e21 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0HF-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11W-A070-08 9a3fc856-abca-4e22-9474-599b672e007a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11W-A071-09 464a1d47-a56a-4667-b4c5-911e5d4a7363 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11X-A072-08 b181781c-13d5-4a16-b817-7f0071c44cbc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-01A TCGA-BH-A0HF-01A-11X-A073-09 b866a34a-6b4d-44d6-8155-10d55f9a7798 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-10A TCGA-BH-A0HF-10A-01D-A059-01 746438b0-55f5-4b5a-bd03-dc463b46d4c2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-10A TCGA-BH-A0HF-10A-01D-A059-01 746438b0-55f5-4b5a-bd03-dc463b46d4c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G03_697108.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0HF TCGA-BH-A0HF-10A TCGA-BH-A0HF-10A-01D-A059-01 746438b0-55f5-4b5a-bd03-dc463b46d4c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G03_697108.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-10A TCGA-BH-A0HF-10A-01D-A059-01 746438b0-55f5-4b5a-bd03-dc463b46d4c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G03_697108.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-10A TCGA-BH-A0HF-10A-01D-A059-01 746438b0-55f5-4b5a-bd03-dc463b46d4c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G03_697108.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-10A TCGA-BH-A0HF-10A-01D-A059-01 746438b0-55f5-4b5a-bd03-dc463b46d4c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G03_697108.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-10A TCGA-BH-A0HF-10A-01D-A059-01 746438b0-55f5-4b5a-bd03-dc463b46d4c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G03_697108.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-10A TCGA-BH-A0HF-10A-01D-A059-01 746438b0-55f5-4b5a-bd03-dc463b46d4c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G03_697108.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-10A TCGA-BH-A0HF-10A-01D-A059-01 746438b0-55f5-4b5a-bd03-dc463b46d4c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G03_697108.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-10A TCGA-BH-A0HF-10A-01D-A060-02 5caa4a42-cc60-42d0-bb1a-d274ee1c85ea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-10A TCGA-BH-A0HF-10A-01D-A074-08 4712e99c-039d-4dce-93d3-0703fea2e215 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-10A TCGA-BH-A0HF-10A-01D-A075-09 d1f4ef0b-7909-4196-839d-e664a223290e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-10A TCGA-BH-A0HF-10A-01W-A070-08 7394a6de-3ece-4cc4-a2a0-80c9dc81484d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-10A TCGA-BH-A0HF-10A-01W-A071-09 6116e3af-4c46-4be9-98b3-ef1d6c3cdf65 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-10A TCGA-BH-A0HF-10A-01X-A072-08 7b7ee09a-61cb-4c23-8108-bc1ed0cf149b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HF TCGA-BH-A0HF-10A TCGA-BH-A0HF-10A-01X-A073-09 4b65014f-c26c-4bf5-8c8e-756a3252ae56 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11D-A086-02 e1c9d4b8-44d4-4939-83dd-2960914ae50b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11D-A087-01 fab48d98-dc30-4a19-8108-48476a6362ee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11D-A087-01 fab48d98-dc30-4a19-8108-48476a6362ee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F12_698032.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11D-A087-01 fab48d98-dc30-4a19-8108-48476a6362ee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F12_698032.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11D-A087-01 fab48d98-dc30-4a19-8108-48476a6362ee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F12_698032.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11D-A087-01 fab48d98-dc30-4a19-8108-48476a6362ee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F12_698032.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11D-A087-01 fab48d98-dc30-4a19-8108-48476a6362ee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F12_698032.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11D-A087-01 fab48d98-dc30-4a19-8108-48476a6362ee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F12_698032.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11D-A087-01 fab48d98-dc30-4a19-8108-48476a6362ee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F12_698032.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11D-A087-01 fab48d98-dc30-4a19-8108-48476a6362ee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F12_698032.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11D-A088-05 39995c93-51a8-4784-aa5e-975116a16b14 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11D-A099-09 507213d0-ef1c-400c-8724-24cd6a39feb8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11D-A099-09 507213d0-ef1c-400c-8724-24cd6a39feb8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11D-A10P-05 ce3c2ab4-b92b-472e-aa38-62f840314af8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11D-A10P-05 ce3c2ab4-b92b-472e-aa38-62f840314af8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791010_R05C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11D-A10P-05 ce3c2ab4-b92b-472e-aa38-62f840314af8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791010_R05C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11D-A10P-05 ce3c2ab4-b92b-472e-aa38-62f840314af8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-BH-A0HI-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11D-A10P-05 ce3c2ab4-b92b-472e-aa38-62f840314af8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-BH-A0HI-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11R-A084-07 682942cb-589f-4348-abc2-3c7cc76fb34d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11R-A084-07 682942cb-589f-4348-abc2-3c7cc76fb34d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012600_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11R-A084-07 682942cb-589f-4348-abc2-3c7cc76fb34d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012600_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11R-A084-07 682942cb-589f-4348-abc2-3c7cc76fb34d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012600_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11R-A084-07 682942cb-589f-4348-abc2-3c7cc76fb34d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476563.TCGA-BH-A0HI-01A-11R-A084-07.110406_UNC13-SN749_0050_BB05L2ABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11R-A084-07 682942cb-589f-4348-abc2-3c7cc76fb34d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476576.TCGA-BH-A0HI-01A-11R-A084-07.110406_UNC13-SN749_0050_BB05L2ABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11R-A084-07 682942cb-589f-4348-abc2-3c7cc76fb34d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476706.TCGA-BH-A0HI-01A-11R-A084-07.110406_UNC13-SN749_0050_BB05L2ABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11R-A085-13 9b640dcc-2a9e-47d8-9d2c-d5e7006b9bff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11R-A085-13 9b640dcc-2a9e-47d8-9d2c-d5e7006b9bff miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0HI-01A-11R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11R-A085-13 9b640dcc-2a9e-47d8-9d2c-d5e7006b9bff miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0HI-01A-11R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11W-A097-09 2bd93c2d-7d44-40e7-9ad6-14b3c4196d21 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-01A TCGA-BH-A0HI-01A-11X-A098-09 754e1507-c2f9-40fe-9d9a-7b828956bbe5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-10A TCGA-BH-A0HI-10A-01D-A086-02 73b497cd-5315-46e8-bb3c-43498560c926 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-10A TCGA-BH-A0HI-10A-01D-A087-01 cdf50742-412a-43da-b053-30a19b03056b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-10A TCGA-BH-A0HI-10A-01D-A087-01 cdf50742-412a-43da-b053-30a19b03056b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G01_698054.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-BH-A0HI TCGA-BH-A0HI-10A TCGA-BH-A0HI-10A-01D-A087-01 cdf50742-412a-43da-b053-30a19b03056b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G01_698054.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-10A TCGA-BH-A0HI-10A-01D-A087-01 cdf50742-412a-43da-b053-30a19b03056b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G01_698054.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-10A TCGA-BH-A0HI-10A-01D-A087-01 cdf50742-412a-43da-b053-30a19b03056b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G01_698054.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-10A TCGA-BH-A0HI-10A-01D-A087-01 cdf50742-412a-43da-b053-30a19b03056b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G01_698054.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-10A TCGA-BH-A0HI-10A-01D-A087-01 cdf50742-412a-43da-b053-30a19b03056b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G01_698054.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-10A TCGA-BH-A0HI-10A-01D-A087-01 cdf50742-412a-43da-b053-30a19b03056b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G01_698054.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-10A TCGA-BH-A0HI-10A-01D-A087-01 cdf50742-412a-43da-b053-30a19b03056b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G01_698054.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-10A TCGA-BH-A0HI-10A-01D-A099-09 f3a881a6-bfa4-4dc7-8a41-f5e2b9538b34 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-10A TCGA-BH-A0HI-10A-01D-A099-09 f3a881a6-bfa4-4dc7-8a41-f5e2b9538b34 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-10A TCGA-BH-A0HI-10A-01W-A097-09 e44df5f9-7e20-4cd4-baac-d8b129af282a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HI TCGA-BH-A0HI-10A TCGA-BH-A0HI-10A-01X-A098-09 f53ddee1-9193-4198-b130-68fe5e9b8f0e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11D-A058-05 981c2118-d80a-4f38-9762-4184b77d926d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11D-A059-01 6a9b5a0c-ce6c-4445-8316-0b25795d23d1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11D-A059-01 6a9b5a0c-ce6c-4445-8316-0b25795d23d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A07_697200.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11D-A059-01 6a9b5a0c-ce6c-4445-8316-0b25795d23d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A07_697200.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11D-A059-01 6a9b5a0c-ce6c-4445-8316-0b25795d23d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A07_697200.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11D-A059-01 6a9b5a0c-ce6c-4445-8316-0b25795d23d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A07_697200.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11D-A059-01 6a9b5a0c-ce6c-4445-8316-0b25795d23d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A07_697200.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11D-A059-01 6a9b5a0c-ce6c-4445-8316-0b25795d23d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A07_697200.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11D-A059-01 6a9b5a0c-ce6c-4445-8316-0b25795d23d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A07_697200.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11D-A059-01 6a9b5a0c-ce6c-4445-8316-0b25795d23d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A07_697200.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11D-A060-02 b96ae5ec-0139-4b8d-8136-b5bfa7af8987 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11D-A074-08 1524f900-914f-4723-8158-db7c114d89db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11D-A075-09 68a33d46-b20b-44cc-8f5c-8090a1199c07 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11D-A10P-05 9824e40b-2adb-4402-a986-d39dea5f89d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11D-A10P-05 9824e40b-2adb-4402-a986-d39dea5f89d6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486019_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11D-A10P-05 9824e40b-2adb-4402-a986-d39dea5f89d6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486019_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11D-A10P-05 9824e40b-2adb-4402-a986-d39dea5f89d6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0HK-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11D-A10P-05 9824e40b-2adb-4402-a986-d39dea5f89d6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0HK-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11R-A056-07 85845e8c-e9d7-43c4-8dfc-d7fb0cf85ac5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11R-A056-07 85845e8c-e9d7-43c4-8dfc-d7fb0cf85ac5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012510_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11R-A056-07 85845e8c-e9d7-43c4-8dfc-d7fb0cf85ac5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012510_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11R-A056-07 85845e8c-e9d7-43c4-8dfc-d7fb0cf85ac5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012510_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11R-A056-07 85845e8c-e9d7-43c4-8dfc-d7fb0cf85ac5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476355.TCGA-BH-A0HK-01A-11R-A056-07.110406_UNC13-SN749_0050_BB05L2ABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11R-A056-07 85845e8c-e9d7-43c4-8dfc-d7fb0cf85ac5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476375.TCGA-BH-A0HK-01A-11R-A056-07.110406_UNC13-SN749_0050_BB05L2ABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11R-A056-07 85845e8c-e9d7-43c4-8dfc-d7fb0cf85ac5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476436.TCGA-BH-A0HK-01A-11R-A056-07.110406_UNC13-SN749_0050_BB05L2ABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11R-A057-13 1d8aa1d0-077b-4894-bf46-ac84d4ab99f1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11R-A057-13 1d8aa1d0-077b-4894-bf46-ac84d4ab99f1 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0HK-01A-11R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11R-A057-13 1d8aa1d0-077b-4894-bf46-ac84d4ab99f1 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0HK-01A-11R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11W-A070-08 bd8c407c-e04a-43bc-adf9-2e302c475776 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11W-A071-09 fe131f38-d0a6-446b-831f-6f1f9e382594 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11W-A071-09 fe131f38-d0a6-446b-831f-6f1f9e382594 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11X-A072-08 184b5ce7-77e4-47c5-932a-cf21040bab36 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-01A TCGA-BH-A0HK-01A-11X-A073-09 139502d6-c308-4771-8bf1-749753b2eaec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-10A TCGA-BH-A0HK-10A-01D-A059-01 f061aa5c-1a4d-4139-b6e9-5a85331bb987 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-10A TCGA-BH-A0HK-10A-01D-A059-01 f061aa5c-1a4d-4139-b6e9-5a85331bb987 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H08_697034.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0HK TCGA-BH-A0HK-10A TCGA-BH-A0HK-10A-01D-A059-01 f061aa5c-1a4d-4139-b6e9-5a85331bb987 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H08_697034.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-10A TCGA-BH-A0HK-10A-01D-A059-01 f061aa5c-1a4d-4139-b6e9-5a85331bb987 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H08_697034.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-10A TCGA-BH-A0HK-10A-01D-A059-01 f061aa5c-1a4d-4139-b6e9-5a85331bb987 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H08_697034.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-10A TCGA-BH-A0HK-10A-01D-A059-01 f061aa5c-1a4d-4139-b6e9-5a85331bb987 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H08_697034.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-10A TCGA-BH-A0HK-10A-01D-A059-01 f061aa5c-1a4d-4139-b6e9-5a85331bb987 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H08_697034.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-10A TCGA-BH-A0HK-10A-01D-A059-01 f061aa5c-1a4d-4139-b6e9-5a85331bb987 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H08_697034.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-10A TCGA-BH-A0HK-10A-01D-A059-01 f061aa5c-1a4d-4139-b6e9-5a85331bb987 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_H08_697034.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-10A TCGA-BH-A0HK-10A-01D-A060-02 aacc0421-e331-49e8-ba8f-aa7b091336c5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-10A TCGA-BH-A0HK-10A-01D-A074-08 b663800d-b670-42af-bbb9-ee2f5ac74f60 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-10A TCGA-BH-A0HK-10A-01D-A075-09 ce883ffe-0931-4e17-bf69-3d327db51028 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-10A TCGA-BH-A0HK-10A-01W-A070-08 08ef3e63-2912-49b8-b908-cace44e825bf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-10A TCGA-BH-A0HK-10A-01W-A071-09 2765bf65-94df-4c9a-91c2-0bb653729c02 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-10A TCGA-BH-A0HK-10A-01W-A071-09 2765bf65-94df-4c9a-91c2-0bb653729c02 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-10A TCGA-BH-A0HK-10A-01X-A072-08 4abdbbfd-abe0-4fcf-baf7-b51aa3ddba7f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-10A TCGA-BH-A0HK-10A-01X-A073-09 09a92e4b-a320-42dc-ac8c-bc25a0b3f8f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11D-A091-02 9fc6c3e1-4b9d-4abd-bdea-514cc242afb1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11D-A092-01 bb3be2ee-5e5a-44c7-ab12-e24a36654798 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11D-A092-01 bb3be2ee-5e5a-44c7-ab12-e24a36654798 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G11_729738.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11D-A092-01 bb3be2ee-5e5a-44c7-ab12-e24a36654798 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G11_729738.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11D-A092-01 bb3be2ee-5e5a-44c7-ab12-e24a36654798 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G11_729738.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11D-A092-01 bb3be2ee-5e5a-44c7-ab12-e24a36654798 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G11_729738.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11D-A092-01 bb3be2ee-5e5a-44c7-ab12-e24a36654798 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G11_729738.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11D-A092-01 bb3be2ee-5e5a-44c7-ab12-e24a36654798 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G11_729738.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11D-A092-01 bb3be2ee-5e5a-44c7-ab12-e24a36654798 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G11_729738.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11D-A092-01 bb3be2ee-5e5a-44c7-ab12-e24a36654798 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/MAPLE_p_TCGAb78_BrstRedo_SNP_N_GenomeWideSNP_6_G11_729738.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11D-A093-05 f7e88478-01d3-4a34-b658-87b78a402d52 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11D-A100-09 cfbdad60-db44-41b9-9478-e751445ef637 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11D-A10Q-05 ae3e7cec-b91b-4695-9130-4f0012b3e3ff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11D-A10Q-05 ae3e7cec-b91b-4695-9130-4f0012b3e3ff DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486011_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11D-A10Q-05 ae3e7cec-b91b-4695-9130-4f0012b3e3ff DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486011_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11D-A10Q-05 ae3e7cec-b91b-4695-9130-4f0012b3e3ff DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0HK-11A-11D-A10Q-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11D-A10Q-05 ae3e7cec-b91b-4695-9130-4f0012b3e3ff DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0HK-11A-11D-A10Q-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11R-A089-07 01163f75-8956-40a6-97a5-3c0478d904f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11R-A089-07 01163f75-8956-40a6-97a5-3c0478d904f8 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012637_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 61 02-NOV-10 12.30.07.283000000 AM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11R-A089-07 01163f75-8956-40a6-97a5-3c0478d904f8 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012637_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 61 02-NOV-10 12.25.38.097000000 AM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11R-A089-07 01163f75-8956-40a6-97a5-3c0478d904f8 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012637_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 61 02-NOV-10 12.26.20.805000000 AM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11R-A089-07 01163f75-8956-40a6-97a5-3c0478d904f8 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445935.TCGA-BH-A0HK-11A-11R-A089-07.110824_UNC13-SN749_0101_BB0AHBABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11R-A089-07 01163f75-8956-40a6-97a5-3c0478d904f8 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445963.TCGA-BH-A0HK-11A-11R-A089-07.110824_UNC13-SN749_0101_BB0AHBABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11R-A089-07 01163f75-8956-40a6-97a5-3c0478d904f8 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_445973.TCGA-BH-A0HK-11A-11R-A089-07.110824_UNC13-SN749_0101_BB0AHBABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11R-A090-13 a318c22c-6d9d-476a-b3f4-0b19c698293f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11R-A090-13 a318c22c-6d9d-476a-b3f4-0b19c698293f miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0HK-11A-11R-A090-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11R-A090-13 a318c22c-6d9d-476a-b3f4-0b19c698293f miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0HK-11A-11R-A090-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11W-A100-09 4e96fa4b-0b08-4a59-9c5b-39c2390bbf4f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11W-A100-09 4e96fa4b-0b08-4a59-9c5b-39c2390bbf4f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0HK TCGA-BH-A0HK-11A TCGA-BH-A0HK-11A-11X-A100-09 35cca863-babc-450d-a14c-f6f8c89eb261 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11D-A032-05 cf0b1421-5f9b-4df6-8d9f-278f0fcd6f74 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11D-A032-05 cf0b1421-5f9b-4df6-8d9f-278f0fcd6f74 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-BH-A0HL-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11D-A032-05 cf0b1421-5f9b-4df6-8d9f-278f0fcd6f74 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-BH-A0HL-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11D-A032-05 cf0b1421-5f9b-4df6-8d9f-278f0fcd6f74 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-BH-A0HL-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11D-A033-02 0b6d1c50-13e6-4c73-864f-d4e598c21825 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11D-A036-01 53e67b89-52ff-4af2-a20f-378da3c2b9f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11D-A036-01 53e67b89-52ff-4af2-a20f-378da3c2b9f4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11D-A036-01 53e67b89-52ff-4af2-a20f-378da3c2b9f4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11D-A036-01 53e67b89-52ff-4af2-a20f-378da3c2b9f4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11D-A036-01 53e67b89-52ff-4af2-a20f-378da3c2b9f4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11D-A036-01 53e67b89-52ff-4af2-a20f-378da3c2b9f4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11D-A036-01 53e67b89-52ff-4af2-a20f-378da3c2b9f4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11D-A036-01 53e67b89-52ff-4af2-a20f-378da3c2b9f4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F12_667162.seg.data.txt'. TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11D-A044-08 1a305cb5-e76b-4f2e-a6fa-757e14018cfd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11D-A045-09 33c573fd-862e-41bb-b64b-455f90ec8c6a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11R-A034-07 791dd985-420e-46a0-a770-ebaf0d2beaf1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11R-A034-07 791dd985-420e-46a0-a770-ebaf0d2beaf1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012107_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11R-A034-07 791dd985-420e-46a0-a770-ebaf0d2beaf1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012107_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11R-A034-07 791dd985-420e-46a0-a770-ebaf0d2beaf1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012107_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11R-A035-13 f42e0597-5162-4680-b3f4-bf3edee4d77a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11R-A035-13 f42e0597-5162-4680-b3f4-bf3edee4d77a miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0HL-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11R-A035-13 f42e0597-5162-4680-b3f4-bf3edee4d77a miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0HL-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11W-A050-09 1fd1db26-79e0-4018-8548-8fd20a96c479 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11W-A050-09 1fd1db26-79e0-4018-8548-8fd20a96c479 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11W-A051-08 d05b2a29-aa01-472d-a6ec-144f03afaa28 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11X-A048-08 be1eb1f4-bf54-404b-8303-3dee46499fbd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-01A TCGA-BH-A0HL-01A-11X-A049-09 96515be8-e66a-412e-bb9e-64d7ef90fff1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-10A TCGA-BH-A0HL-10A-11D-A031-02 d88ca443-fd11-41ff-a773-c8ec7407e0c3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-10A TCGA-BH-A0HL-10A-11D-A037-01 5e6505a1-de56-4fe3-81fe-50639652f291 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-10A TCGA-BH-A0HL-10A-11D-A037-01 5e6505a1-de56-4fe3-81fe-50639652f291 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E04_667184.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-BH-A0HL TCGA-BH-A0HL-10A TCGA-BH-A0HL-10A-11D-A037-01 5e6505a1-de56-4fe3-81fe-50639652f291 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E04_667184.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-10A TCGA-BH-A0HL-10A-11D-A037-01 5e6505a1-de56-4fe3-81fe-50639652f291 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E04_667184.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-10A TCGA-BH-A0HL-10A-11D-A037-01 5e6505a1-de56-4fe3-81fe-50639652f291 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E04_667184.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-10A TCGA-BH-A0HL-10A-11D-A037-01 5e6505a1-de56-4fe3-81fe-50639652f291 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E04_667184.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-10A TCGA-BH-A0HL-10A-11D-A037-01 5e6505a1-de56-4fe3-81fe-50639652f291 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E04_667184.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-10A TCGA-BH-A0HL-10A-11D-A037-01 5e6505a1-de56-4fe3-81fe-50639652f291 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E04_667184.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-10A TCGA-BH-A0HL-10A-11D-A037-01 5e6505a1-de56-4fe3-81fe-50639652f291 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E04_667184.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-10A TCGA-BH-A0HL-10A-11D-A046-08 bbe26c4b-a89b-4e60-874a-b4ed59c9846a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-10A TCGA-BH-A0HL-10A-11D-A047-09 0716af3a-d51f-4e7c-92cc-b46e61991216 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-10A TCGA-BH-A0HL-10A-11W-A053-08 7faa9b21-aa87-4875-a7ef-c99c0da68275 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-10A TCGA-BH-A0HL-10A-11W-A055-09 f3a79920-cdfb-4dc7-b10b-9c143fd3d274 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-10A TCGA-BH-A0HL-10A-11W-A055-09 f3a79920-cdfb-4dc7-b10b-9c143fd3d274 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-10A TCGA-BH-A0HL-10A-11X-A052-08 f56ffd5d-ac38-4c57-855c-91975daff267 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HL TCGA-BH-A0HL-10A TCGA-BH-A0HL-10A-11X-A054-09 6e422e7d-9a50-41ae-bbf9-b9d1116334ad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11D-A086-02 5b6bd209-6f71-4dce-ae4a-2b04fb8e6ac3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11D-A087-01 4e118657-b2e3-491b-ba2d-e8d16e04be75 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H07_698120.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H07_698120.seg.data.txt'. TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11D-A087-01 4e118657-b2e3-491b-ba2d-e8d16e04be75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H07_698120.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H07_698120.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H07_698120.seg.data.txt'. TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11D-A087-01 4e118657-b2e3-491b-ba2d-e8d16e04be75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H07_698120.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H07_698120.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H07_698120.seg.data.txt'. TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11D-A087-01 4e118657-b2e3-491b-ba2d-e8d16e04be75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H07_698120.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H07_698120.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H07_698120.seg.data.txt'. TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11D-A087-01 4e118657-b2e3-491b-ba2d-e8d16e04be75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H07_698120.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H07_698120.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H07_698120.seg.data.txt'. TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11D-A087-01 4e118657-b2e3-491b-ba2d-e8d16e04be75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H07_698120.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H07_698120.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H07_698120.seg.data.txt'. TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11D-A087-01 4e118657-b2e3-491b-ba2d-e8d16e04be75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H07_698120.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H07_698120.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H07_698120.seg.data.txt'. TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11D-A087-01 4e118657-b2e3-491b-ba2d-e8d16e04be75 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H07_698120.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H07_698120.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H07_698120.seg.data.txt'. TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11D-A088-05 0a6935d7-5193-4a92-ba85-5b58dc755220 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11D-A099-09 ada199c5-8015-481f-a46e-46fa42646cd8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11D-A099-09 ada199c5-8015-481f-a46e-46fa42646cd8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11D-A099-09 ada199c5-8015-481f-a46e-46fa42646cd8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11D-A10P-05 44b927e3-4ee5-4dd1-82b6-6f87dd1aa03a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11D-A10P-05 44b927e3-4ee5-4dd1-82b6-6f87dd1aa03a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791020_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11D-A10P-05 44b927e3-4ee5-4dd1-82b6-6f87dd1aa03a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791020_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11D-A10P-05 44b927e3-4ee5-4dd1-82b6-6f87dd1aa03a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-BH-A0HN-01A-11D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11D-A10P-05 44b927e3-4ee5-4dd1-82b6-6f87dd1aa03a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-BH-A0HN-01A-11D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11R-A084-07 c0ccb685-0789-4559-9189-05b841173aff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11R-A084-07 c0ccb685-0789-4559-9189-05b841173aff Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012623_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11R-A084-07 c0ccb685-0789-4559-9189-05b841173aff Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012623_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11R-A084-07 c0ccb685-0789-4559-9189-05b841173aff Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012623_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11R-A085-13 c63c6c2c-03ce-44bb-a7b8-98cbf845f8ab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11R-A085-13 c63c6c2c-03ce-44bb-a7b8-98cbf845f8ab miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0HN-01A-11R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11R-A085-13 c63c6c2c-03ce-44bb-a7b8-98cbf845f8ab miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0HN-01A-11R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11W-A097-09 6af9f277-b0be-4b2a-a89b-54b39ce09280 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-01A TCGA-BH-A0HN-01A-11X-A098-09 d95932c0-9e89-4b8a-8cfe-3355dba9b6cd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-10A TCGA-BH-A0HN-10A-01D-A086-02 eef10053-a08e-4e42-913a-a60906d4bfd9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-10A TCGA-BH-A0HN-10A-01D-A087-01 b8d9f2bd-dcf4-4b29-a007-ce283056a90c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-10A TCGA-BH-A0HN-10A-01D-A087-01 b8d9f2bd-dcf4-4b29-a007-ce283056a90c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H08_698166.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-BH-A0HN TCGA-BH-A0HN-10A TCGA-BH-A0HN-10A-01D-A087-01 b8d9f2bd-dcf4-4b29-a007-ce283056a90c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H08_698166.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-10A TCGA-BH-A0HN-10A-01D-A087-01 b8d9f2bd-dcf4-4b29-a007-ce283056a90c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H08_698166.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-10A TCGA-BH-A0HN-10A-01D-A087-01 b8d9f2bd-dcf4-4b29-a007-ce283056a90c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H08_698166.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-10A TCGA-BH-A0HN-10A-01D-A087-01 b8d9f2bd-dcf4-4b29-a007-ce283056a90c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H08_698166.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-10A TCGA-BH-A0HN-10A-01D-A087-01 b8d9f2bd-dcf4-4b29-a007-ce283056a90c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H08_698166.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-10A TCGA-BH-A0HN-10A-01D-A087-01 b8d9f2bd-dcf4-4b29-a007-ce283056a90c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H08_698166.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-10A TCGA-BH-A0HN-10A-01D-A087-01 b8d9f2bd-dcf4-4b29-a007-ce283056a90c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_H08_698166.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-10A TCGA-BH-A0HN-10A-01D-A099-09 c86ec88b-34c5-4b99-a6a7-aa0c4b033684 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-10A TCGA-BH-A0HN-10A-01D-A099-09 c86ec88b-34c5-4b99-a6a7-aa0c4b033684 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-10A TCGA-BH-A0HN-10A-01D-A099-09 c86ec88b-34c5-4b99-a6a7-aa0c4b033684 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-10A TCGA-BH-A0HN-10A-01W-A097-09 6cadcc1f-526a-485c-81a3-7ac5f77b6b99 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HN TCGA-BH-A0HN-10A TCGA-BH-A0HN-10A-01X-A098-09 962d3fc8-d915-493f-9c46-ffcef5e77a7b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11D-A032-05 167e071d-c632-4adf-93e7-3d5eb86f420d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11D-A032-05 167e071d-c632-4adf-93e7-3d5eb86f420d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-BH-A0HO-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11D-A032-05 167e071d-c632-4adf-93e7-3d5eb86f420d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-BH-A0HO-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11D-A032-05 167e071d-c632-4adf-93e7-3d5eb86f420d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-BH-A0HO-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11D-A033-02 dcad4d06-bcb6-4b2b-b019-6106ef8f2073 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11D-A036-01 b4d2c0c0-92c9-407d-af6f-1f951e1096ae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11D-A036-01 b4d2c0c0-92c9-407d-af6f-1f951e1096ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E01_667154.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11D-A036-01 b4d2c0c0-92c9-407d-af6f-1f951e1096ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E01_667154.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11D-A036-01 b4d2c0c0-92c9-407d-af6f-1f951e1096ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E01_667154.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11D-A036-01 b4d2c0c0-92c9-407d-af6f-1f951e1096ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E01_667154.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11D-A036-01 b4d2c0c0-92c9-407d-af6f-1f951e1096ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E01_667154.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11D-A036-01 b4d2c0c0-92c9-407d-af6f-1f951e1096ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E01_667154.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11D-A036-01 b4d2c0c0-92c9-407d-af6f-1f951e1096ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E01_667154.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11D-A036-01 b4d2c0c0-92c9-407d-af6f-1f951e1096ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E01_667154.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11D-A044-08 c8e0c3ce-ed34-462b-b00a-0da9ec513bfd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11D-A045-09 bac1a095-e296-4267-bb0a-c06d99b41633 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11R-A034-07 92f53e8e-abd5-4597-a6be-678be549315d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11R-A034-07 92f53e8e-abd5-4597-a6be-678be549315d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012095_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11R-A034-07 92f53e8e-abd5-4597-a6be-678be549315d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012095_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11R-A034-07 92f53e8e-abd5-4597-a6be-678be549315d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012095_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11R-A034-07 92f53e8e-abd5-4597-a6be-678be549315d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_474040.TCGA-BH-A0HO-01A-11R-A034-07.110412_UNC13-SN749_0053_BB018EABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11R-A034-07 92f53e8e-abd5-4597-a6be-678be549315d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_474170.TCGA-BH-A0HO-01A-11R-A034-07.110412_UNC13-SN749_0053_BB018EABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11R-A034-07 92f53e8e-abd5-4597-a6be-678be549315d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_474283.TCGA-BH-A0HO-01A-11R-A034-07.110412_UNC13-SN749_0053_BB018EABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11R-A035-13 3955f7a2-d822-4538-8e72-d2d19a1383a8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11R-A035-13 3955f7a2-d822-4538-8e72-d2d19a1383a8 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0HO-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11R-A035-13 3955f7a2-d822-4538-8e72-d2d19a1383a8 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0HO-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11W-A050-09 354172e7-3e54-4ec4-88fa-fd7781cc86ae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11W-A050-09 354172e7-3e54-4ec4-88fa-fd7781cc86ae Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11W-A050-09 354172e7-3e54-4ec4-88fa-fd7781cc86ae Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11W-A051-08 9ff6a8af-523d-4a26-af75-636e0618a73a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11X-A048-08 252a0080-0391-44b4-8173-0c95a22d4e84 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-01A TCGA-BH-A0HO-01A-11X-A049-09 920dfb4a-4e53-43dc-9c22-236f84902e12 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-10A TCGA-BH-A0HO-10A-01D-A031-02 245bc241-86ec-4c52-b149-1ee62cee8538 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-10A TCGA-BH-A0HO-10A-01D-A037-01 afb999b8-8e00-44c4-8a1f-1be051a82745 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-10A TCGA-BH-A0HO-10A-01D-A037-01 afb999b8-8e00-44c4-8a1f-1be051a82745 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B08_667084.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-BH-A0HO TCGA-BH-A0HO-10A TCGA-BH-A0HO-10A-01D-A037-01 afb999b8-8e00-44c4-8a1f-1be051a82745 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B08_667084.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-10A TCGA-BH-A0HO-10A-01D-A037-01 afb999b8-8e00-44c4-8a1f-1be051a82745 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B08_667084.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-10A TCGA-BH-A0HO-10A-01D-A037-01 afb999b8-8e00-44c4-8a1f-1be051a82745 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B08_667084.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-10A TCGA-BH-A0HO-10A-01D-A037-01 afb999b8-8e00-44c4-8a1f-1be051a82745 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B08_667084.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-10A TCGA-BH-A0HO-10A-01D-A037-01 afb999b8-8e00-44c4-8a1f-1be051a82745 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B08_667084.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-10A TCGA-BH-A0HO-10A-01D-A037-01 afb999b8-8e00-44c4-8a1f-1be051a82745 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B08_667084.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-10A TCGA-BH-A0HO-10A-01D-A037-01 afb999b8-8e00-44c4-8a1f-1be051a82745 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B08_667084.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-10A TCGA-BH-A0HO-10A-01D-A046-08 420807ef-c50b-4f7d-b25b-9cdc8c9e23e9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-10A TCGA-BH-A0HO-10A-01D-A047-09 85bfe185-024b-4f12-8f6f-05742a095b5e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-10A TCGA-BH-A0HO-10A-01W-A053-08 a2b2bd38-0b32-4e0f-85b9-b30f3494aded Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-10A TCGA-BH-A0HO-10A-01W-A055-09 32f59f61-3335-4cfe-93f3-5931705e312e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-10A TCGA-BH-A0HO-10A-01W-A055-09 32f59f61-3335-4cfe-93f3-5931705e312e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-10A TCGA-BH-A0HO-10A-01W-A055-09 32f59f61-3335-4cfe-93f3-5931705e312e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-10A TCGA-BH-A0HO-10A-01X-A052-08 7bb8b26a-03cd-49f0-810e-af3caad31f8f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HO TCGA-BH-A0HO-10A TCGA-BH-A0HO-10A-01X-A054-09 9e46332a-8985-4a10-bad2-f9ff52d2a282 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12D-A086-02 30a82577-7ea3-4be7-a12d-dcc2c16cf42a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12D-A087-01 f3f959ab-bf38-45eb-9422-ed83acae1244 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12D-A087-01 f3f959ab-bf38-45eb-9422-ed83acae1244 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G08_698134.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12D-A087-01 f3f959ab-bf38-45eb-9422-ed83acae1244 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G08_698134.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12D-A087-01 f3f959ab-bf38-45eb-9422-ed83acae1244 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G08_698134.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12D-A087-01 f3f959ab-bf38-45eb-9422-ed83acae1244 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G08_698134.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12D-A087-01 f3f959ab-bf38-45eb-9422-ed83acae1244 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G08_698134.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12D-A087-01 f3f959ab-bf38-45eb-9422-ed83acae1244 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G08_698134.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12D-A087-01 f3f959ab-bf38-45eb-9422-ed83acae1244 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G08_698134.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12D-A087-01 f3f959ab-bf38-45eb-9422-ed83acae1244 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_G08_698134.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12D-A088-05 ff38063d-bcef-471b-8724-a66929df35ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12D-A099-09 ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12D-A099-09 ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12D-A099-09 ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12D-A10P-05 7ea0fcce-87cf-4288-a19d-1000adf09ee4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12D-A10P-05 7ea0fcce-87cf-4288-a19d-1000adf09ee4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791006_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12D-A10P-05 7ea0fcce-87cf-4288-a19d-1000adf09ee4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791006_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12D-A10P-05 7ea0fcce-87cf-4288-a19d-1000adf09ee4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-BH-A0HP-01A-12D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12D-A10P-05 7ea0fcce-87cf-4288-a19d-1000adf09ee4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-BH-A0HP-01A-12D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12R-A084-07 f0c59856-0421-46e3-a2f9-e17f0f267930 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12R-A084-07 f0c59856-0421-46e3-a2f9-e17f0f267930 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012629_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12R-A084-07 f0c59856-0421-46e3-a2f9-e17f0f267930 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012629_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12R-A084-07 f0c59856-0421-46e3-a2f9-e17f0f267930 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012629_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12R-A084-07 f0c59856-0421-46e3-a2f9-e17f0f267930 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_472413.TCGA-BH-A0HP-01A-12R-A084-07.110426_UNC12-SN629_0077_AB08WNABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12R-A084-07 f0c59856-0421-46e3-a2f9-e17f0f267930 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_472467.TCGA-BH-A0HP-01A-12R-A084-07.110426_UNC12-SN629_0077_AB08WNABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12R-A084-07 f0c59856-0421-46e3-a2f9-e17f0f267930 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_472635.TCGA-BH-A0HP-01A-12R-A084-07.110426_UNC12-SN629_0077_AB08WNABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12R-A085-13 93ea0687-98d0-492b-b7a2-54fe061d41b8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12R-A085-13 93ea0687-98d0-492b-b7a2-54fe061d41b8 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0HP-01A-12R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12R-A085-13 93ea0687-98d0-492b-b7a2-54fe061d41b8 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0HP-01A-12R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12W-A097-09 4e5fcb00-aa80-484a-94fa-1b0d45d72c38 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-01A TCGA-BH-A0HP-01A-12X-A098-09 cc9efb57-9712-460e-8610-2c21c821f5d3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-10A TCGA-BH-A0HP-10A-01D-A086-02 3f261d25-1379-41b3-a6e8-013081775713 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-10A TCGA-BH-A0HP-10A-01D-A087-01 1959d4e5-55c8-4899-9e50-46ef1499052d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-10A TCGA-BH-A0HP-10A-01D-A087-01 1959d4e5-55c8-4899-9e50-46ef1499052d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B02_698080.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-BH-A0HP TCGA-BH-A0HP-10A TCGA-BH-A0HP-10A-01D-A087-01 1959d4e5-55c8-4899-9e50-46ef1499052d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B02_698080.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-10A TCGA-BH-A0HP-10A-01D-A087-01 1959d4e5-55c8-4899-9e50-46ef1499052d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B02_698080.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-10A TCGA-BH-A0HP-10A-01D-A087-01 1959d4e5-55c8-4899-9e50-46ef1499052d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B02_698080.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-10A TCGA-BH-A0HP-10A-01D-A087-01 1959d4e5-55c8-4899-9e50-46ef1499052d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B02_698080.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-10A TCGA-BH-A0HP-10A-01D-A087-01 1959d4e5-55c8-4899-9e50-46ef1499052d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B02_698080.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-10A TCGA-BH-A0HP-10A-01D-A087-01 1959d4e5-55c8-4899-9e50-46ef1499052d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B02_698080.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-10A TCGA-BH-A0HP-10A-01D-A087-01 1959d4e5-55c8-4899-9e50-46ef1499052d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_B02_698080.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-10A TCGA-BH-A0HP-10A-01D-A099-09 8c059d33-23de-439a-914a-290527c5efbe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-10A TCGA-BH-A0HP-10A-01D-A099-09 8c059d33-23de-439a-914a-290527c5efbe Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-10A TCGA-BH-A0HP-10A-01D-A099-09 8c059d33-23de-439a-914a-290527c5efbe Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-10A TCGA-BH-A0HP-10A-01W-A097-09 134fce82-29e6-49f6-8acf-144e633a2622 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HP TCGA-BH-A0HP-10A TCGA-BH-A0HP-10A-01X-A098-09 f09d4fc0-d58a-4087-bc61-a531170eb266 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11D-A032-05 247b89d7-05c2-49ca-8f96-08786b03a511 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11D-A032-05 247b89d7-05c2-49ca-8f96-08786b03a511 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-BH-A0HQ-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11D-A032-05 247b89d7-05c2-49ca-8f96-08786b03a511 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-BH-A0HQ-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11D-A032-05 247b89d7-05c2-49ca-8f96-08786b03a511 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-BH-A0HQ-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11D-A033-02 c888dc10-e062-4e97-8dff-1ecd04dae66f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11D-A036-01 e84b732c-f8a5-4f4c-933e-ea539fff5d48 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11D-A036-01 e84b732c-f8a5-4f4c-933e-ea539fff5d48 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11D-A036-01 e84b732c-f8a5-4f4c-933e-ea539fff5d48 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11D-A036-01 e84b732c-f8a5-4f4c-933e-ea539fff5d48 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11D-A036-01 e84b732c-f8a5-4f4c-933e-ea539fff5d48 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11D-A036-01 e84b732c-f8a5-4f4c-933e-ea539fff5d48 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11D-A036-01 e84b732c-f8a5-4f4c-933e-ea539fff5d48 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11D-A036-01 e84b732c-f8a5-4f4c-933e-ea539fff5d48 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1003.0 flagged aliquot to be excluded for analysis based on file 'COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E03_667116.seg.data.txt'. TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11D-A044-08 9c4da4d7-a1b3-4c95-a808-6f8eceaf3ecd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11D-A045-09 33d16efa-5e83-4e18-93f2-be2fc32ccbac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11R-A034-07 856452d1-5480-4921-bf5b-4c6f625a99c0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11R-A034-07 856452d1-5480-4921-bf5b-4c6f625a99c0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012108_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11R-A034-07 856452d1-5480-4921-bf5b-4c6f625a99c0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012108_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11R-A034-07 856452d1-5480-4921-bf5b-4c6f625a99c0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012108_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11R-A034-07 856452d1-5480-4921-bf5b-4c6f625a99c0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_474009.TCGA-BH-A0HQ-01A-11R-A034-07.110412_UNC13-SN749_0053_BB018EABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11R-A034-07 856452d1-5480-4921-bf5b-4c6f625a99c0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_474016.TCGA-BH-A0HQ-01A-11R-A034-07.110412_UNC13-SN749_0053_BB018EABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11R-A034-07 856452d1-5480-4921-bf5b-4c6f625a99c0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_474033.TCGA-BH-A0HQ-01A-11R-A034-07.110412_UNC13-SN749_0053_BB018EABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11R-A035-13 5a604ff4-28d4-4863-bb27-06d38eb63a0f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11R-A035-13 5a604ff4-28d4-4863-bb27-06d38eb63a0f miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0HQ-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11R-A035-13 5a604ff4-28d4-4863-bb27-06d38eb63a0f miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0HQ-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11W-A050-09 f03af67f-3119-4ee4-a4b0-227d36f493ba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11W-A050-09 f03af67f-3119-4ee4-a4b0-227d36f493ba Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11W-A050-09 f03af67f-3119-4ee4-a4b0-227d36f493ba Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11W-A051-08 13e0b1a5-6834-4152-a792-20747d3c9655 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11X-A048-08 4189472a-47ff-414e-8695-b888f21f69ba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-01A TCGA-BH-A0HQ-01A-11X-A049-09 00a31122-f2d5-4d09-b165-1231703d8dc2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-10A TCGA-BH-A0HQ-10A-01D-A031-02 843e9ea6-203f-43fc-8ce0-a4f4f5265ebe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-10A TCGA-BH-A0HQ-10A-01D-A037-01 e417b9bb-683e-40fe-b2e7-0829a2644cc3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-10A TCGA-BH-A0HQ-10A-01D-A037-01 e417b9bb-683e-40fe-b2e7-0829a2644cc3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B06_667224.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-BH-A0HQ TCGA-BH-A0HQ-10A TCGA-BH-A0HQ-10A-01D-A037-01 e417b9bb-683e-40fe-b2e7-0829a2644cc3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B06_667224.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-10A TCGA-BH-A0HQ-10A-01D-A037-01 e417b9bb-683e-40fe-b2e7-0829a2644cc3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B06_667224.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-10A TCGA-BH-A0HQ-10A-01D-A037-01 e417b9bb-683e-40fe-b2e7-0829a2644cc3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B06_667224.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-10A TCGA-BH-A0HQ-10A-01D-A037-01 e417b9bb-683e-40fe-b2e7-0829a2644cc3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B06_667224.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-10A TCGA-BH-A0HQ-10A-01D-A037-01 e417b9bb-683e-40fe-b2e7-0829a2644cc3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B06_667224.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-10A TCGA-BH-A0HQ-10A-01D-A037-01 e417b9bb-683e-40fe-b2e7-0829a2644cc3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B06_667224.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-10A TCGA-BH-A0HQ-10A-01D-A037-01 e417b9bb-683e-40fe-b2e7-0829a2644cc3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_B06_667224.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-10A TCGA-BH-A0HQ-10A-01D-A046-08 bbd634d7-6b6c-4dde-aac8-82f68bb6a7f5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-10A TCGA-BH-A0HQ-10A-01D-A047-09 20e5b563-bec2-436b-b9b1-3be85a249dec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-10A TCGA-BH-A0HQ-10A-01W-A053-08 c5632337-1721-4f35-b1f7-be3fd4bc2a28 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-10A TCGA-BH-A0HQ-10A-01W-A055-09 006ff264-ef7d-4021-a879-77080c0440cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-10A TCGA-BH-A0HQ-10A-01W-A055-09 006ff264-ef7d-4021-a879-77080c0440cf Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-10A TCGA-BH-A0HQ-10A-01W-A055-09 006ff264-ef7d-4021-a879-77080c0440cf Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-10A TCGA-BH-A0HQ-10A-01X-A052-08 2ebb7129-2d21-4583-944b-c4efb12124c5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HQ TCGA-BH-A0HQ-10A TCGA-BH-A0HQ-10A-01X-A054-09 d2cb9c50-daee-48b0-93e0-38754c88c0a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HQ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11D-A032-05 8d125fd5-3853-443b-a3de-2212f2d091c7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11D-A032-05 8d125fd5-3853-443b-a3de-2212f2d091c7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-BH-A0HU-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11D-A032-05 8d125fd5-3853-443b-a3de-2212f2d091c7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-BH-A0HU-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11D-A032-05 8d125fd5-3853-443b-a3de-2212f2d091c7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-BH-A0HU-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11D-A033-02 4db61b53-e1d0-4d23-8d2e-8177fd3ebc9b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11D-A036-01 f5222559-bf86-457c-af8d-b14e676ae34c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11D-A036-01 f5222559-bf86-457c-af8d-b14e676ae34c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E07_667100.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11D-A036-01 f5222559-bf86-457c-af8d-b14e676ae34c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E07_667100.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11D-A036-01 f5222559-bf86-457c-af8d-b14e676ae34c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E07_667100.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11D-A036-01 f5222559-bf86-457c-af8d-b14e676ae34c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E07_667100.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11D-A036-01 f5222559-bf86-457c-af8d-b14e676ae34c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E07_667100.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11D-A036-01 f5222559-bf86-457c-af8d-b14e676ae34c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E07_667100.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11D-A036-01 f5222559-bf86-457c-af8d-b14e676ae34c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E07_667100.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11D-A036-01 f5222559-bf86-457c-af8d-b14e676ae34c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_E07_667100.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11D-A044-08 afb3c65a-68cd-431e-9768-c377556327fc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11D-A045-09 37e9df74-5f58-4e2d-bae0-c7dba0912de4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11R-A034-07 c3c6bd09-e8ea-45f3-bdd6-e592bfc2b94f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11R-A034-07 c3c6bd09-e8ea-45f3-bdd6-e592bfc2b94f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012109_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11R-A034-07 c3c6bd09-e8ea-45f3-bdd6-e592bfc2b94f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012109_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11R-A034-07 c3c6bd09-e8ea-45f3-bdd6-e592bfc2b94f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012109_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11R-A034-07 c3c6bd09-e8ea-45f3-bdd6-e592bfc2b94f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_474019.TCGA-BH-A0HU-01A-11R-A034-07.110412_UNC13-SN749_0053_BB018EABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11R-A034-07 c3c6bd09-e8ea-45f3-bdd6-e592bfc2b94f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_474021.TCGA-BH-A0HU-01A-11R-A034-07.110412_UNC13-SN749_0053_BB018EABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11R-A034-07 c3c6bd09-e8ea-45f3-bdd6-e592bfc2b94f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_474196.TCGA-BH-A0HU-01A-11R-A034-07.110412_UNC13-SN749_0053_BB018EABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11R-A035-13 f202e056-3210-4577-9b92-1a2d0af20356 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11R-A035-13 f202e056-3210-4577-9b92-1a2d0af20356 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0HU-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11R-A035-13 f202e056-3210-4577-9b92-1a2d0af20356 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0HU-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11W-A050-09 b46f2619-5937-4847-bb38-fe6022225ab9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11W-A050-09 b46f2619-5937-4847-bb38-fe6022225ab9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11W-A050-09 b46f2619-5937-4847-bb38-fe6022225ab9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11W-A051-08 7305c1f2-2d9e-4429-8783-46c35ce15c76 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11X-A048-08 5a62934a-94cd-4503-97ce-651307c306f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-01A TCGA-BH-A0HU-01A-11X-A049-09 724ddc42-cf1e-42de-9fc4-610edc58e951 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-10A TCGA-BH-A0HU-10A-01D-A031-02 692a828a-1b42-456a-a2f7-2ea65fa66ac8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-10A TCGA-BH-A0HU-10A-01D-A037-01 f54bf620-fd8c-4819-8fb5-a36fa61f4679 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-10A TCGA-BH-A0HU-10A-01D-A037-01 f54bf620-fd8c-4819-8fb5-a36fa61f4679 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F02_667228.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-BH-A0HU TCGA-BH-A0HU-10A TCGA-BH-A0HU-10A-01D-A037-01 f54bf620-fd8c-4819-8fb5-a36fa61f4679 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F02_667228.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-10A TCGA-BH-A0HU-10A-01D-A037-01 f54bf620-fd8c-4819-8fb5-a36fa61f4679 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F02_667228.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-10A TCGA-BH-A0HU-10A-01D-A037-01 f54bf620-fd8c-4819-8fb5-a36fa61f4679 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F02_667228.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-10A TCGA-BH-A0HU-10A-01D-A037-01 f54bf620-fd8c-4819-8fb5-a36fa61f4679 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F02_667228.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-10A TCGA-BH-A0HU-10A-01D-A037-01 f54bf620-fd8c-4819-8fb5-a36fa61f4679 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F02_667228.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-10A TCGA-BH-A0HU-10A-01D-A037-01 f54bf620-fd8c-4819-8fb5-a36fa61f4679 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F02_667228.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-10A TCGA-BH-A0HU-10A-01D-A037-01 f54bf620-fd8c-4819-8fb5-a36fa61f4679 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_F02_667228.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-10A TCGA-BH-A0HU-10A-01D-A046-08 58274f36-ad2b-4caa-bca6-b242a7dcbf73 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-10A TCGA-BH-A0HU-10A-01D-A047-09 9f4d5298-1ca7-434e-93ca-53e49c95500e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-10A TCGA-BH-A0HU-10A-01W-A053-08 995ddb14-167c-4389-9813-8e71f7c74b2b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-10A TCGA-BH-A0HU-10A-01W-A055-09 630a5659-c666-4da0-bb90-969cf071fde3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-10A TCGA-BH-A0HU-10A-01W-A055-09 630a5659-c666-4da0-bb90-969cf071fde3 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-10A TCGA-BH-A0HU-10A-01W-A055-09 630a5659-c666-4da0-bb90-969cf071fde3 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-10A TCGA-BH-A0HU-10A-01X-A052-08 7cc84ef0-7055-4659-8c13-630c2737ed98 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HU TCGA-BH-A0HU-10A TCGA-BH-A0HU-10A-01X-A054-09 b4226e9b-df60-4164-8f1f-1b4bef7ac0e1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11D-A032-05 69e5d138-e4b8-4591-b1e8-fda82dbd6380 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11D-A032-05 69e5d138-e4b8-4591-b1e8-fda82dbd6380 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-1.TCGA-BH-A0HW-01A-11D-A032-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.2.0.0 56 21-SEP-10 06.34.01.208000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11D-A032-05 69e5d138-e4b8-4591-b1e8-fda82dbd6380 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-2.TCGA-BH-A0HW-01A-11D-A032-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.2.0.0 56 21-SEP-10 07.05.59.762000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11D-A032-05 69e5d138-e4b8-4591-b1e8-fda82dbd6380 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0/jhu-usc.edu_BRCA.HumanMethylation27.2.lvl-3.TCGA-BH-A0HW-01A-11D-A032-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.2.0.0 56 21-SEP-10 06.49.59.802000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11D-A033-02 f8550c6b-e41d-4378-b68e-79e9820a2717 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11D-A036-01 6fa29a88-190a-4394-b84b-8eb6d12f5339 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11D-A036-01 6fa29a88-190a-4394-b84b-8eb6d12f5339 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G03_667060.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11D-A036-01 6fa29a88-190a-4394-b84b-8eb6d12f5339 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G03_667060.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11D-A036-01 6fa29a88-190a-4394-b84b-8eb6d12f5339 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G03_667060.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11D-A036-01 6fa29a88-190a-4394-b84b-8eb6d12f5339 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G03_667060.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11D-A036-01 6fa29a88-190a-4394-b84b-8eb6d12f5339 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G03_667060.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11D-A036-01 6fa29a88-190a-4394-b84b-8eb6d12f5339 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G03_667060.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11D-A036-01 6fa29a88-190a-4394-b84b-8eb6d12f5339 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_G03_667060.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11D-A036-01 6fa29a88-190a-4394-b84b-8eb6d12f5339 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11R-A034-07 0172d30c-287c-4f3e-b70c-5760c6dccb7c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11R-A034-07 0172d30c-287c-4f3e-b70c-5760c6dccb7c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0/US82800149_251976012110_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.1.0.0 56 09-SEP-10 10.16.55.025000000 AM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11R-A034-07 0172d30c-287c-4f3e-b70c-5760c6dccb7c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0/US82800149_251976012110_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.1.0.0 56 09-SEP-10 10.15.34.736000000 AM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11R-A034-07 0172d30c-287c-4f3e-b70c-5760c6dccb7c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0/US82800149_251976012110_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.1.0.0 56 09-SEP-10 10.16.19.659000000 AM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11R-A034-07 0172d30c-287c-4f3e-b70c-5760c6dccb7c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_474023.TCGA-BH-A0HW-01A-11R-A034-07.110412_UNC13-SN749_0053_BB018EABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11R-A034-07 0172d30c-287c-4f3e-b70c-5760c6dccb7c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_474133.TCGA-BH-A0HW-01A-11R-A034-07.110412_UNC13-SN749_0053_BB018EABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11R-A034-07 0172d30c-287c-4f3e-b70c-5760c6dccb7c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_474143.TCGA-BH-A0HW-01A-11R-A034-07.110412_UNC13-SN749_0053_BB018EABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 56 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11R-A035-13 f3a4b387-1c65-47cd-9a34-c813ade6e05f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11R-A035-13 f3a4b387-1c65-47cd-9a34-c813ade6e05f miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0HW-01A-11R-A035-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11R-A035-13 f3a4b387-1c65-47cd-9a34-c813ade6e05f miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0HW-01A-11R-A035-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 56 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11W-A050-09 706ec3be-bd65-4f42-b5cc-603f7f62c91a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11W-A050-09 706ec3be-bd65-4f42-b5cc-603f7f62c91a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11W-A050-09 706ec3be-bd65-4f42-b5cc-603f7f62c91a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11W-A051-08 1d4567c8-5ead-4052-b74e-879f04751403 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11X-A048-08 19a28a0a-efb2-405d-951b-83524ee723cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-01A TCGA-BH-A0HW-01A-11X-A049-09 0ca66ac3-2c53-4918-b880-10f21bdbe1f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-10A TCGA-BH-A0HW-10A-01D-A031-02 9ec7b82c-76be-4446-b12c-6ccd125b7f40 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-10A TCGA-BH-A0HW-10A-01D-A037-01 d6186247-4f38-472d-b836-e26beaf88153 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-10A TCGA-BH-A0HW-10A-01D-A037-01 d6186247-4f38-472d-b836-e26beaf88153 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D02_667144.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.56.1008.0 56 07-DEC-11 11.28.46.806000000 AM TCGA-BH-A0HW TCGA-BH-A0HW-10A TCGA-BH-A0HW-10A-01D-A037-01 d6186247-4f38-472d-b836-e26beaf88153 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D02_667144.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-10A TCGA-BH-A0HW-10A-01D-A037-01 d6186247-4f38-472d-b836-e26beaf88153 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D02_667144.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-10A TCGA-BH-A0HW-10A-01D-A037-01 d6186247-4f38-472d-b836-e26beaf88153 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D02_667144.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-10A TCGA-BH-A0HW-10A-01D-A037-01 d6186247-4f38-472d-b836-e26beaf88153 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D02_667144.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-10A TCGA-BH-A0HW-10A-01D-A037-01 d6186247-4f38-472d-b836-e26beaf88153 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D02_667144.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-10A TCGA-BH-A0HW-10A-01D-A037-01 d6186247-4f38-472d-b836-e26beaf88153 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D02_667144.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.56.1008.0 56 07-DEC-11 12.25.36.368000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-10A TCGA-BH-A0HW-10A-01D-A037-01 d6186247-4f38-472d-b836-e26beaf88153 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0/COZEN_p_TCGAb56_SNP_2N_GenomeWideSNP_6_D02_667144.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.56.1008.0 56 07-DEC-11 01.00.08.712000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-10A TCGA-BH-A0HW-10A-01D-A046-08 66fcc2ec-44d6-4655-9723-e6920e8de80a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-10A TCGA-BH-A0HW-10A-01D-A047-09 7225fb01-bf5d-4bf8-9151-08b3b96d31be Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-10A TCGA-BH-A0HW-10A-01W-A053-08 eba98798-a244-4b33-b54e-5660ae45631f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-10A TCGA-BH-A0HW-10A-01W-A055-09 76e4b953-efcc-401c-916a-e3c7ecbe8de6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-10A TCGA-BH-A0HW-10A-01W-A055-09 76e4b953-efcc-401c-916a-e3c7ecbe8de6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 56 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-10A TCGA-BH-A0HW-10A-01W-A055-09 76e4b953-efcc-401c-916a-e3c7ecbe8de6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 56 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-10A TCGA-BH-A0HW-10A-01X-A052-08 7a65da11-9bb5-4f4a-9609-4a1217761d68 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HW TCGA-BH-A0HW-10A TCGA-BH-A0HW-10A-01X-A054-09 78abfaa6-0ec8-4cd6-9aec-8a3714d8a0b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.56.26.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.56.26.0 56 19-JAN-12 06.06.18.338000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21D-A058-05 5d55c615-57be-455b-8764-cb1f10767963 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21D-A059-01 c07a21d6-9aad-41c8-b3fc-ff846239c1fc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21D-A059-01 c07a21d6-9aad-41c8-b3fc-ff846239c1fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G07_697158.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21D-A059-01 c07a21d6-9aad-41c8-b3fc-ff846239c1fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G07_697158.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21D-A059-01 c07a21d6-9aad-41c8-b3fc-ff846239c1fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G07_697158.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21D-A059-01 c07a21d6-9aad-41c8-b3fc-ff846239c1fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G07_697158.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21D-A059-01 c07a21d6-9aad-41c8-b3fc-ff846239c1fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G07_697158.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21D-A059-01 c07a21d6-9aad-41c8-b3fc-ff846239c1fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G07_697158.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21D-A059-01 c07a21d6-9aad-41c8-b3fc-ff846239c1fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G07_697158.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21D-A059-01 c07a21d6-9aad-41c8-b3fc-ff846239c1fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_G07_697158.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21D-A060-02 11821020-0e93-4479-85f8-306976de6722 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21D-A074-08 86679f23-2828-4f69-bb2a-b6dc622b2136 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21D-A075-09 ab306b45-cfcc-46be-aa6f-f37903b359e7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21D-A10P-05 e37d202d-1ce5-42e8-a2c5-a09fe7fa0fd6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21D-A10P-05 e37d202d-1ce5-42e8-a2c5-a09fe7fa0fd6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486021_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21D-A10P-05 e37d202d-1ce5-42e8-a2c5-a09fe7fa0fd6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0/6005486021_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.3.1.0 61 07-NOV-11 04.32.21.854000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21D-A10P-05 e37d202d-1ce5-42e8-a2c5-a09fe7fa0fd6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-2.TCGA-BH-A0HX-01A-21D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.3.1.0 61 07-NOV-11 05.13.03.106000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21D-A10P-05 e37d202d-1ce5-42e8-a2c5-a09fe7fa0fd6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0/jhu-usc.edu_BRCA.HumanMethylation450.3.lvl-3.TCGA-BH-A0HX-01A-21D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.3.1.0 61 07-NOV-11 05.50.18.567000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21R-A056-07 8bbaef6c-31c4-47a4-8e7b-7e6242d02666 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21R-A056-07 8bbaef6c-31c4-47a4-8e7b-7e6242d02666 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0/US82800149_251976012516_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.2.0.0 61 13-OCT-10 10.42.23.633000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21R-A056-07 8bbaef6c-31c4-47a4-8e7b-7e6242d02666 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0/US82800149_251976012516_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.2.0.0 61 13-OCT-10 10.42.45.502000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21R-A056-07 8bbaef6c-31c4-47a4-8e7b-7e6242d02666 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0/US82800149_251976012516_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.2.0.0 61 13-OCT-10 10.43.30.367000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21R-A056-07 8bbaef6c-31c4-47a4-8e7b-7e6242d02666 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476457.TCGA-BH-A0HX-01A-21R-A056-07.110406_UNC13-SN749_0050_BB05L2ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21R-A056-07 8bbaef6c-31c4-47a4-8e7b-7e6242d02666 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476464.TCGA-BH-A0HX-01A-21R-A056-07.110406_UNC13-SN749_0050_BB05L2ABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21R-A056-07 8bbaef6c-31c4-47a4-8e7b-7e6242d02666 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_476550.TCGA-BH-A0HX-01A-21R-A056-07.110406_UNC13-SN749_0050_BB05L2ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 61 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21R-A057-13 41c0c9e5-7775-449f-8a72-c17823570acb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21R-A057-13 41c0c9e5-7775-449f-8a72-c17823570acb miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0HX-01A-21R-A057-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21R-A057-13 41c0c9e5-7775-449f-8a72-c17823570acb miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0HX-01A-21R-A057-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 61 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21W-A070-08 c2fb663f-e8e4-49e9-a786-35528f943e75 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21W-A071-09 27df78cd-1f39-42f3-92e6-56664d4c472c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21W-A071-09 27df78cd-1f39-42f3-92e6-56664d4c472c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21X-A072-08 b9f78b41-7ee6-43b5-ab24-d559ee6161be Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-01A TCGA-BH-A0HX-01A-21X-A073-09 da658e0a-889e-455a-b0bd-3c94defdd760 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-10A TCGA-BH-A0HX-10A-02D-A059-01 cf83586c-52d5-4140-9b9d-527b18526edd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-10A TCGA-BH-A0HX-10A-02D-A059-01 cf83586c-52d5-4140-9b9d-527b18526edd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A10_697110.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.61.1008.0 61 07-DEC-11 11.31.43.152000000 AM TCGA-BH-A0HX TCGA-BH-A0HX-10A TCGA-BH-A0HX-10A-02D-A059-01 cf83586c-52d5-4140-9b9d-527b18526edd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A10_697110.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-10A TCGA-BH-A0HX-10A-02D-A059-01 cf83586c-52d5-4140-9b9d-527b18526edd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A10_697110.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-10A TCGA-BH-A0HX-10A-02D-A059-01 cf83586c-52d5-4140-9b9d-527b18526edd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A10_697110.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-10A TCGA-BH-A0HX-10A-02D-A059-01 cf83586c-52d5-4140-9b9d-527b18526edd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A10_697110.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-10A TCGA-BH-A0HX-10A-02D-A059-01 cf83586c-52d5-4140-9b9d-527b18526edd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A10_697110.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-10A TCGA-BH-A0HX-10A-02D-A059-01 cf83586c-52d5-4140-9b9d-527b18526edd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A10_697110.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-10A TCGA-BH-A0HX-10A-02D-A059-01 cf83586c-52d5-4140-9b9d-527b18526edd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A10_697110.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-10A TCGA-BH-A0HX-10A-02D-A060-02 39c48c76-b9ac-4485-a7c3-4729a56f830c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-10A TCGA-BH-A0HX-10A-02D-A074-08 913d1b42-77b1-47f5-8cdb-0fa804008e21 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-10A TCGA-BH-A0HX-10A-02D-A075-09 941d0302-bf78-4118-b895-8b4f4abde854 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-10A TCGA-BH-A0HX-10A-02W-A070-08 ded7da62-f153-4f34-b005-e89bf3a97ed8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-10A TCGA-BH-A0HX-10A-02W-A071-09 ec32084a-c085-4ef6-b50e-212ae61944ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-10A TCGA-BH-A0HX-10A-02W-A071-09 ec32084a-c085-4ef6-b50e-212ae61944ec Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-10A TCGA-BH-A0HX-10A-02X-A072-08 27f06d76-ce54-4be7-86e6-53ef35b42170 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HX TCGA-BH-A0HX-10A TCGA-BH-A0HX-10A-02X-A073-09 12d9e37e-8855-4473-ba54-89cdfe9e1f4f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HY TCGA-BH-A0HY-01A TCGA-BH-A0HY-01A-11D-A058-05 8d00bf42-3e48-4e27-b5cb-58885d5461cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HY TCGA-BH-A0HY-01A TCGA-BH-A0HY-01A-11D-A059-01 4c85d947-2682-480c-bd54-947fa45c14f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HY TCGA-BH-A0HY-01A TCGA-BH-A0HY-01A-11D-A060-02 6eb2e537-c8c5-4c9f-9625-8d4459c81b52 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HY TCGA-BH-A0HY-01A TCGA-BH-A0HY-01A-11D-A074-08 bf4cc641-65e5-4b87-8049-2c8c0a752abd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HY TCGA-BH-A0HY-01A TCGA-BH-A0HY-01A-11D-A075-09 d10fbb41-7a47-42f1-bb6c-91f13ac2f20d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HY TCGA-BH-A0HY-01A TCGA-BH-A0HY-01A-11D-A10P-05 83114ca3-1cb7-4d42-913c-49f20f57a285 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HY TCGA-BH-A0HY-01A TCGA-BH-A0HY-01A-11D-A10P-05 83114ca3-1cb7-4d42-913c-49f20f57a285 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HY TCGA-BH-A0HY-01A TCGA-BH-A0HY-01A-11W-A071-09 a63c2000-9e41-4897-8b01-4723c382096e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HY TCGA-BH-A0HY-01A TCGA-BH-A0HY-01A-11W-A071-09 a63c2000-9e41-4897-8b01-4723c382096e Somatic Mutations IlluminaGA_DNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HY TCGA-BH-A0HY-10A TCGA-BH-A0HY-10A-02D-A059-01 c28006ff-987e-4eee-87ba-e5b9d9e17a10 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HY TCGA-BH-A0HY-10A TCGA-BH-A0HY-10A-02D-A059-01 c28006ff-987e-4eee-87ba-e5b9d9e17a10 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A02_697180.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HY TCGA-BH-A0HY-10A TCGA-BH-A0HY-10A-02D-A059-01 c28006ff-987e-4eee-87ba-e5b9d9e17a10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A02_697180.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HY TCGA-BH-A0HY-10A TCGA-BH-A0HY-10A-02D-A059-01 c28006ff-987e-4eee-87ba-e5b9d9e17a10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A02_697180.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.61.1008.0 61 07-DEC-11 12.37.21.156000000 PM TCGA-BH-A0HY TCGA-BH-A0HY-10A TCGA-BH-A0HY-10A-02D-A059-01 c28006ff-987e-4eee-87ba-e5b9d9e17a10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0/BITES_p_TCGAb61_SNP_S_GenomeWideSNP_6_A02_697180.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.61.1008.0 61 07-DEC-11 01.00.09.583000000 PM TCGA-BH-A0HY TCGA-BH-A0HY-10A TCGA-BH-A0HY-10A-02D-A060-02 4f11a527-cf5f-4922-a7ae-aae1e0ee86cf Complete Clinical Set bio 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1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HY TCGA-BH-A0HY-10A TCGA-BH-A0HY-10A-02W-A070-08 525d8394-fda9-4bb2-9540-7ae1a969291b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HY TCGA-BH-A0HY-10A TCGA-BH-A0HY-10A-02W-A071-09 79cfdba0-e06f-488c-bd73-fbb1a87fb0b3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HY TCGA-BH-A0HY-10A TCGA-BH-A0HY-10A-02W-A071-09 79cfdba0-e06f-488c-bd73-fbb1a87fb0b3 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 61 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0HY TCGA-BH-A0HY-10A TCGA-BH-A0HY-10A-02X-A072-08 bb513d84-ecab-4d4e-8e2e-c8563d36e1e2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0HY TCGA-BH-A0HY-10A TCGA-BH-A0HY-10A-02X-A073-09 272f0a63-a539-476d-8c20-03f9f5219022 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.61.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0HY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.61.23.0 61 12-JAN-12 08.47.09.241000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21D-A086-02 faff531d-6e90-4266-8ae0-46b3b477933a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0RX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21D-A087-01 c73d082f-32bf-4c0f-ac42-1419b5d367be Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0RX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21D-A087-01 c73d082f-32bf-4c0f-ac42-1419b5d367be SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D09_698160.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21D-A087-01 c73d082f-32bf-4c0f-ac42-1419b5d367be SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D09_698160.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21D-A087-01 c73d082f-32bf-4c0f-ac42-1419b5d367be SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D09_698160.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21D-A087-01 c73d082f-32bf-4c0f-ac42-1419b5d367be SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D09_698160.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21D-A087-01 c73d082f-32bf-4c0f-ac42-1419b5d367be SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D09_698160.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21D-A087-01 c73d082f-32bf-4c0f-ac42-1419b5d367be SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D09_698160.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21D-A087-01 c73d082f-32bf-4c0f-ac42-1419b5d367be SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D09_698160.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21D-A087-01 c73d082f-32bf-4c0f-ac42-1419b5d367be SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_D09_698160.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21D-A088-05 f22a3bf9-28ec-49a8-a50a-b66624b9f7b7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0RX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21D-A099-09 48115e9a-5027-455a-a88e-c3d991dbf966 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0RX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21D-A099-09 48115e9a-5027-455a-a88e-c3d991dbf966 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21D-A099-09 48115e9a-5027-455a-a88e-c3d991dbf966 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21D-A10P-05 9f5b1af8-f909-448d-953d-68a80ff7de0c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0RX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21D-A10P-05 9f5b1af8-f909-448d-953d-68a80ff7de0c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791020_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21D-A10P-05 9f5b1af8-f909-448d-953d-68a80ff7de0c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0/6004791020_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.4.1.0 72 07-NOV-11 04.25.26.702000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21D-A10P-05 9f5b1af8-f909-448d-953d-68a80ff7de0c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-2.TCGA-BH-A0RX-01A-21D-A10P-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.4.1.0 72 07-NOV-11 05.19.58.442000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21D-A10P-05 9f5b1af8-f909-448d-953d-68a80ff7de0c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0/jhu-usc.edu_BRCA.HumanMethylation450.4.lvl-3.TCGA-BH-A0RX-01A-21D-A10P-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.4.1.0 72 07-NOV-11 05.42.22.034000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21R-A084-07 5c911cb7-4e7b-4ffd-bd2b-4498ee7b0e88 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0RX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21R-A084-07 5c911cb7-4e7b-4ffd-bd2b-4498ee7b0e88 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0/US82800149_251976012571_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.3.0.0 72 02-NOV-10 12.30.07.283000000 AM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21R-A084-07 5c911cb7-4e7b-4ffd-bd2b-4498ee7b0e88 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0/US82800149_251976012571_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.3.0.0 72 02-NOV-10 12.25.38.097000000 AM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21R-A084-07 5c911cb7-4e7b-4ffd-bd2b-4498ee7b0e88 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0/US82800149_251976012571_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.3.0.0 72 02-NOV-10 12.26.20.805000000 AM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21R-A084-07 5c911cb7-4e7b-4ffd-bd2b-4498ee7b0e88 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480255.TCGA-BH-A0RX-01A-21R-A084-07.110318_SN749_0046_AB039FABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21R-A084-07 5c911cb7-4e7b-4ffd-bd2b-4498ee7b0e88 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480290.TCGA-BH-A0RX-01A-21R-A084-07.110318_SN749_0046_AB039FABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21R-A084-07 5c911cb7-4e7b-4ffd-bd2b-4498ee7b0e88 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_480318.TCGA-BH-A0RX-01A-21R-A084-07.110318_SN749_0046_AB039FABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 72 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21R-A085-13 0e81dba6-a8ba-4f5e-a8c7-fc1e849052a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0RX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21R-A085-13 0e81dba6-a8ba-4f5e-a8c7-fc1e849052a2 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0RX-01A-21R-A085-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21R-A085-13 0e81dba6-a8ba-4f5e-a8c7-fc1e849052a2 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0RX-01A-21R-A085-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 72 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21W-A097-09 84a8be2e-59ec-4dc5-a9eb-e0ff98ffc03e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0RX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-01A TCGA-BH-A0RX-01A-21X-A098-09 886af72b-86dc-4da7-91a0-c221252cd3d1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0RX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-10A TCGA-BH-A0RX-10A-01D-A086-02 6a8fa5c8-7373-4695-aa98-ee9de33ae73f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0RX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-10A TCGA-BH-A0RX-10A-01D-A087-01 283c894c-cca1-488d-b6aa-bbc731876512 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0RX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-10A TCGA-BH-A0RX-10A-01D-A087-01 283c894c-cca1-488d-b6aa-bbc731876512 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F10_698050.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.72.1008.0 72 07-DEC-11 11.29.17.357000000 AM TCGA-BH-A0RX TCGA-BH-A0RX-10A TCGA-BH-A0RX-10A-01D-A087-01 283c894c-cca1-488d-b6aa-bbc731876512 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F10_698050.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-10A TCGA-BH-A0RX-10A-01D-A087-01 283c894c-cca1-488d-b6aa-bbc731876512 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F10_698050.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-10A TCGA-BH-A0RX-10A-01D-A087-01 283c894c-cca1-488d-b6aa-bbc731876512 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F10_698050.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-10A TCGA-BH-A0RX-10A-01D-A087-01 283c894c-cca1-488d-b6aa-bbc731876512 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F10_698050.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-10A TCGA-BH-A0RX-10A-01D-A087-01 283c894c-cca1-488d-b6aa-bbc731876512 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F10_698050.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-10A TCGA-BH-A0RX-10A-01D-A087-01 283c894c-cca1-488d-b6aa-bbc731876512 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F10_698050.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.72.1008.0 72 07-DEC-11 12.27.47.648000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-10A TCGA-BH-A0RX-10A-01D-A087-01 283c894c-cca1-488d-b6aa-bbc731876512 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0/SHAWM_p_TCGAb72_SNP_N_GenomeWideSNP_6_F10_698050.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.72.1008.0 72 07-DEC-11 01.00.09.891000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-10A TCGA-BH-A0RX-10A-01D-A099-09 c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0RX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-10A TCGA-BH-A0RX-10A-01D-A099-09 c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 72 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-10A TCGA-BH-A0RX-10A-01D-A099-09 c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 72 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-10A TCGA-BH-A0RX-10A-01W-A097-09 9740c928-a0ef-4b16-987b-cc070d9476c2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0RX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0RX TCGA-BH-A0RX-10A TCGA-BH-A0RX-10A-01X-A098-09 f0d650ca-7c67-4a4c-bad4-5df60de93c8f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.72.25.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0RX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.72.25.0 72 12-JAN-12 08.48.09.259000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11D-A106-02 64d238ae-78c0-4b63-a260-f5ca85727d85 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11D-A107-01 6b6c28fb-84ba-407c-9317-3fad63e9e35d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11D-A107-01 6b6c28fb-84ba-407c-9317-3fad63e9e35d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A08_730930.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11D-A107-01 6b6c28fb-84ba-407c-9317-3fad63e9e35d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A08_730930.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11D-A107-01 6b6c28fb-84ba-407c-9317-3fad63e9e35d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A08_730930.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11D-A107-01 6b6c28fb-84ba-407c-9317-3fad63e9e35d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A08_730930.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11D-A107-01 6b6c28fb-84ba-407c-9317-3fad63e9e35d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A08_730930.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11D-A107-01 6b6c28fb-84ba-407c-9317-3fad63e9e35d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A08_730930.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11D-A107-01 6b6c28fb-84ba-407c-9317-3fad63e9e35d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A08_730930.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11D-A107-01 6b6c28fb-84ba-407c-9317-3fad63e9e35d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A08_730930.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11D-A10A-05 f954b1fc-c5a1-4c62-8a4e-9baabba36940 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11D-A10A-05 f954b1fc-c5a1-4c62-8a4e-9baabba36940 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486029_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11D-A10A-05 f954b1fc-c5a1-4c62-8a4e-9baabba36940 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486029_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11D-A10A-05 f954b1fc-c5a1-4c62-8a4e-9baabba36940 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-BH-A0W3-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11D-A10A-05 f954b1fc-c5a1-4c62-8a4e-9baabba36940 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-BH-A0W3-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11D-A10G-09 3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11D-A10G-09 3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11D-A10G-09 3fa14183-e0c5-4dc2-bb4a-d8dd42f6578b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11R-A108-13 84541301-4d09-425d-bf9b-84f8f440452e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11R-A108-13 84541301-4d09-425d-bf9b-84f8f440452e miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0W3-01A-11R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11R-A108-13 84541301-4d09-425d-bf9b-84f8f440452e miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0W3-01A-11R-A108-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11R-A109-07 0def3ef8-7608-483c-b899-4d459f6d2e2d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11R-A109-07 0def3ef8-7608-483c-b899-4d459f6d2e2d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012378_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11R-A109-07 0def3ef8-7608-483c-b899-4d459f6d2e2d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012378_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11R-A109-07 0def3ef8-7608-483c-b899-4d459f6d2e2d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012378_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11R-A109-07 0def3ef8-7608-483c-b899-4d459f6d2e2d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_375222.TCGA-BH-A0W3-01A-11R-A109-07.110607_UNC11-SN627_0100_AD0CT7ABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11R-A109-07 0def3ef8-7608-483c-b899-4d459f6d2e2d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_375228.TCGA-BH-A0W3-01A-11R-A109-07.110607_UNC11-SN627_0100_AD0CT7ABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11R-A109-07 0def3ef8-7608-483c-b899-4d459f6d2e2d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_375304.TCGA-BH-A0W3-01A-11R-A109-07.110607_UNC11-SN627_0100_AD0CT7ABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-01A TCGA-BH-A0W3-01A-11X-A10H-09 aa285c40-b915-45a7-898a-774f647d5e0b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-10A TCGA-BH-A0W3-10A-01D-A106-02 245fb95a-a7e5-4253-9c9c-59cad26380a0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-10A TCGA-BH-A0W3-10A-01D-A107-01 e017fbed-f676-4f4f-9246-f02aa700423b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-10A TCGA-BH-A0W3-10A-01D-A107-01 e017fbed-f676-4f4f-9246-f02aa700423b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H08_730914.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-BH-A0W3 TCGA-BH-A0W3-10A TCGA-BH-A0W3-10A-01D-A107-01 e017fbed-f676-4f4f-9246-f02aa700423b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H08_730914.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-10A TCGA-BH-A0W3-10A-01D-A107-01 e017fbed-f676-4f4f-9246-f02aa700423b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H08_730914.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-10A TCGA-BH-A0W3-10A-01D-A107-01 e017fbed-f676-4f4f-9246-f02aa700423b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H08_730914.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-10A TCGA-BH-A0W3-10A-01D-A107-01 e017fbed-f676-4f4f-9246-f02aa700423b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H08_730914.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-10A TCGA-BH-A0W3-10A-01D-A107-01 e017fbed-f676-4f4f-9246-f02aa700423b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H08_730914.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-10A TCGA-BH-A0W3-10A-01D-A107-01 e017fbed-f676-4f4f-9246-f02aa700423b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H08_730914.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-10A TCGA-BH-A0W3-10A-01D-A107-01 e017fbed-f676-4f4f-9246-f02aa700423b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H08_730914.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-10A TCGA-BH-A0W3-10A-01D-A10G-09 7c4982ec-17d3-48c7-be29-c76c2d57437a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-10A TCGA-BH-A0W3-10A-01X-A10H-09 6f5bdee8-4595-46eb-960a-3001189bb761 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-10A TCGA-BH-A0W3-10A-01X-A10H-09 6f5bdee8-4595-46eb-960a-3001189bb761 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0W3 TCGA-BH-A0W3-10A TCGA-BH-A0W3-10A-01X-A10H-09 6f5bdee8-4595-46eb-960a-3001189bb761 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11D-A106-02 16dffb91-e45b-4f99-a9c2-2eb1a62bfea5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11D-A107-01 5256eab2-28f3-467a-a26d-9da6d612ed5b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11D-A107-01 5256eab2-28f3-467a-a26d-9da6d612ed5b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H01_730966.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11D-A107-01 5256eab2-28f3-467a-a26d-9da6d612ed5b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H01_730966.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11D-A107-01 5256eab2-28f3-467a-a26d-9da6d612ed5b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H01_730966.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11D-A107-01 5256eab2-28f3-467a-a26d-9da6d612ed5b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H01_730966.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11D-A107-01 5256eab2-28f3-467a-a26d-9da6d612ed5b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H01_730966.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11D-A107-01 5256eab2-28f3-467a-a26d-9da6d612ed5b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H01_730966.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11D-A107-01 5256eab2-28f3-467a-a26d-9da6d612ed5b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H01_730966.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11D-A107-01 5256eab2-28f3-467a-a26d-9da6d612ed5b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_H01_730966.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11D-A10A-05 0863eab0-4b23-430b-a7ee-aae3efe99190 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11D-A10A-05 0863eab0-4b23-430b-a7ee-aae3efe99190 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486005_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11D-A10A-05 0863eab0-4b23-430b-a7ee-aae3efe99190 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486005_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11D-A10A-05 0863eab0-4b23-430b-a7ee-aae3efe99190 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-BH-A0W4-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11D-A10A-05 0863eab0-4b23-430b-a7ee-aae3efe99190 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-BH-A0W4-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11D-A10G-09 fdafddde-aff1-42b4-bf94-a95861eacf53 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11D-A10G-09 fdafddde-aff1-42b4-bf94-a95861eacf53 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11R-A108-13 4dd748fc-97d7-43e6-9e20-46d14e08240d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11R-A108-13 4dd748fc-97d7-43e6-9e20-46d14e08240d miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0W4-01A-11R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11R-A108-13 4dd748fc-97d7-43e6-9e20-46d14e08240d miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0W4-01A-11R-A108-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11R-A109-07 750469b2-05c7-4647-b101-cdd94246d254 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11R-A109-07 750469b2-05c7-4647-b101-cdd94246d254 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012392_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11R-A109-07 750469b2-05c7-4647-b101-cdd94246d254 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012392_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11R-A109-07 750469b2-05c7-4647-b101-cdd94246d254 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012392_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11R-A109-07 750469b2-05c7-4647-b101-cdd94246d254 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_379603.TCGA-BH-A0W4-01A-11R-A109-07.110506_UNC9-SN296_0178_BC02MGABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11R-A109-07 750469b2-05c7-4647-b101-cdd94246d254 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_379604.TCGA-BH-A0W4-01A-11R-A109-07.110506_UNC9-SN296_0178_BC02MGABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11R-A109-07 750469b2-05c7-4647-b101-cdd94246d254 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_379686.TCGA-BH-A0W4-01A-11R-A109-07.110506_UNC9-SN296_0178_BC02MGABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-01A TCGA-BH-A0W4-01A-11X-A10H-09 88cb37fc-7e01-4a1c-8806-8a70c1a684f1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-10A TCGA-BH-A0W4-10A-01D-A106-02 6e3e3973-01dc-4c13-a3aa-a5b536251449 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-10A TCGA-BH-A0W4-10A-01D-A107-01 e379cf6b-819d-49a1-b6fc-74096aed72ee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-10A TCGA-BH-A0W4-10A-01D-A107-01 e379cf6b-819d-49a1-b6fc-74096aed72ee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C04_731012.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-BH-A0W4 TCGA-BH-A0W4-10A TCGA-BH-A0W4-10A-01D-A107-01 e379cf6b-819d-49a1-b6fc-74096aed72ee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C04_731012.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-10A TCGA-BH-A0W4-10A-01D-A107-01 e379cf6b-819d-49a1-b6fc-74096aed72ee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C04_731012.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-10A TCGA-BH-A0W4-10A-01D-A107-01 e379cf6b-819d-49a1-b6fc-74096aed72ee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C04_731012.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-10A TCGA-BH-A0W4-10A-01D-A107-01 e379cf6b-819d-49a1-b6fc-74096aed72ee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C04_731012.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-10A TCGA-BH-A0W4-10A-01D-A107-01 e379cf6b-819d-49a1-b6fc-74096aed72ee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C04_731012.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-10A TCGA-BH-A0W4-10A-01D-A107-01 e379cf6b-819d-49a1-b6fc-74096aed72ee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C04_731012.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-10A TCGA-BH-A0W4-10A-01D-A107-01 e379cf6b-819d-49a1-b6fc-74096aed72ee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_C04_731012.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-10A TCGA-BH-A0W4-10A-01D-A10G-09 7ec51376-daf4-4268-834b-55766654128e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-10A TCGA-BH-A0W4-10A-01D-A10G-09 7ec51376-daf4-4268-834b-55766654128e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-10A TCGA-BH-A0W4-10A-01D-A117-09 28294dbc-5426-40a4-8882-31e1681223d8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W4 TCGA-BH-A0W4-10A TCGA-BH-A0W4-10A-01X-A10H-09 8ac338e1-da23-4d34-a7ea-94b8e81276d4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11D-A106-02 6c8b3a70-cd58-4bfc-9418-54182588cfcb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11D-A107-01 c2056ecb-78f2-4bc7-8954-030007e428dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11D-A107-01 c2056ecb-78f2-4bc7-8954-030007e428dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F01_731080.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11D-A107-01 c2056ecb-78f2-4bc7-8954-030007e428dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F01_731080.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11D-A107-01 c2056ecb-78f2-4bc7-8954-030007e428dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F01_731080.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11D-A107-01 c2056ecb-78f2-4bc7-8954-030007e428dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F01_731080.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11D-A107-01 c2056ecb-78f2-4bc7-8954-030007e428dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F01_731080.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11D-A107-01 c2056ecb-78f2-4bc7-8954-030007e428dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F01_731080.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11D-A107-01 c2056ecb-78f2-4bc7-8954-030007e428dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F01_731080.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11D-A107-01 c2056ecb-78f2-4bc7-8954-030007e428dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F01_731080.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11D-A10A-05 1ac576b0-8c5e-4048-9f52-5068a164e44c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11D-A10A-05 1ac576b0-8c5e-4048-9f52-5068a164e44c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486029_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11D-A10A-05 1ac576b0-8c5e-4048-9f52-5068a164e44c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486029_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11D-A10A-05 1ac576b0-8c5e-4048-9f52-5068a164e44c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-BH-A0W5-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11D-A10A-05 1ac576b0-8c5e-4048-9f52-5068a164e44c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-BH-A0W5-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11D-A10G-09 aca1d737-c24c-49fd-86c0-ab2b29cd28de Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11D-A10G-09 aca1d737-c24c-49fd-86c0-ab2b29cd28de Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11D-A10G-09 aca1d737-c24c-49fd-86c0-ab2b29cd28de Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11R-A108-13 b83854c4-1d31-4f2d-98e3-b8250b5fd76d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11R-A108-13 b83854c4-1d31-4f2d-98e3-b8250b5fd76d miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0W5-01A-11R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11R-A108-13 b83854c4-1d31-4f2d-98e3-b8250b5fd76d miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0W5-01A-11R-A108-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11R-A109-07 91e55e6f-b884-4112-8d3f-a9f8974dd63b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11R-A109-07 91e55e6f-b884-4112-8d3f-a9f8974dd63b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012682_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11R-A109-07 91e55e6f-b884-4112-8d3f-a9f8974dd63b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012682_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11R-A109-07 91e55e6f-b884-4112-8d3f-a9f8974dd63b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012682_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11R-A109-07 91e55e6f-b884-4112-8d3f-a9f8974dd63b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_502888.TCGA-BH-A0W5-01A-11R-A109-07.110901_UNC12-SN629_0127_BC025UABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11R-A109-07 91e55e6f-b884-4112-8d3f-a9f8974dd63b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_502900.TCGA-BH-A0W5-01A-11R-A109-07.110901_UNC12-SN629_0127_BC025UABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11R-A109-07 91e55e6f-b884-4112-8d3f-a9f8974dd63b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_502944.TCGA-BH-A0W5-01A-11R-A109-07.110901_UNC12-SN629_0127_BC025UABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-01A TCGA-BH-A0W5-01A-11X-A10H-09 611ec1f2-3bd7-4cac-823e-b339efff8873 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-10A TCGA-BH-A0W5-10A-01D-A106-02 154c09b7-c645-497a-9b14-655db46cd990 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-10A TCGA-BH-A0W5-10A-01D-A107-01 a17023e0-fa4c-4851-b1c8-08523f3311ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-10A TCGA-BH-A0W5-10A-01D-A107-01 a17023e0-fa4c-4851-b1c8-08523f3311ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F04_731046.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-BH-A0W5 TCGA-BH-A0W5-10A TCGA-BH-A0W5-10A-01D-A107-01 a17023e0-fa4c-4851-b1c8-08523f3311ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F04_731046.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-10A TCGA-BH-A0W5-10A-01D-A107-01 a17023e0-fa4c-4851-b1c8-08523f3311ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F04_731046.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-10A TCGA-BH-A0W5-10A-01D-A107-01 a17023e0-fa4c-4851-b1c8-08523f3311ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F04_731046.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-10A TCGA-BH-A0W5-10A-01D-A107-01 a17023e0-fa4c-4851-b1c8-08523f3311ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F04_731046.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-10A TCGA-BH-A0W5-10A-01D-A107-01 a17023e0-fa4c-4851-b1c8-08523f3311ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F04_731046.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-10A TCGA-BH-A0W5-10A-01D-A107-01 a17023e0-fa4c-4851-b1c8-08523f3311ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F04_731046.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-10A TCGA-BH-A0W5-10A-01D-A107-01 a17023e0-fa4c-4851-b1c8-08523f3311ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_F04_731046.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-10A TCGA-BH-A0W5-10A-01D-A10G-09 05ba1c38-2f72-44e5-9deb-451ed62cfaf4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-10A TCGA-BH-A0W5-10A-01D-A117-09 0907d948-5ae6-478a-823a-e87b1b52ffbb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-10A TCGA-BH-A0W5-10A-01D-A117-09 0907d948-5ae6-478a-823a-e87b1b52ffbb Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-10A TCGA-BH-A0W5-10A-01D-A117-09 0907d948-5ae6-478a-823a-e87b1b52ffbb Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0W5 TCGA-BH-A0W5-10A TCGA-BH-A0W5-10A-01X-A10H-09 be4c72ac-c211-46ea-aad6-1e47188f2686 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11D-A10X-02 29d1c0f0-8f83-4350-a62e-0ab39570fec8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11D-A10Y-09 7d20774c-6aac-4eb0-a876-1be14e0f3004 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11D-A10Y-09 7d20774c-6aac-4eb0-a876-1be14e0f3004 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11D-A111-01 a9266ff7-8563-45b1-914f-0855ecb4cddd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11D-A111-01 a9266ff7-8563-45b1-914f-0855ecb4cddd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D11_735264.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11D-A111-01 a9266ff7-8563-45b1-914f-0855ecb4cddd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D11_735264.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11D-A111-01 a9266ff7-8563-45b1-914f-0855ecb4cddd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D11_735264.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11D-A111-01 a9266ff7-8563-45b1-914f-0855ecb4cddd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D11_735264.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11D-A111-01 a9266ff7-8563-45b1-914f-0855ecb4cddd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D11_735264.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11D-A111-01 a9266ff7-8563-45b1-914f-0855ecb4cddd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D11_735264.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11D-A111-01 a9266ff7-8563-45b1-914f-0855ecb4cddd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D11_735264.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11D-A111-01 a9266ff7-8563-45b1-914f-0855ecb4cddd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D11_735264.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11D-A112-05 bcb36b70-3c55-4d94-8739-fb2e666870c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11D-A112-05 bcb36b70-3c55-4d94-8739-fb2e666870c8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-BH-A0W7-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11D-A112-05 bcb36b70-3c55-4d94-8739-fb2e666870c8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-BH-A0W7-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11D-A112-05 bcb36b70-3c55-4d94-8739-fb2e666870c8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-BH-A0W7-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11R-A114-13 5c8c2bf2-0336-49a2-8527-5db41de19dfb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11R-A114-13 5c8c2bf2-0336-49a2-8527-5db41de19dfb miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0W7-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11R-A114-13 5c8c2bf2-0336-49a2-8527-5db41de19dfb miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A0W7-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11R-A115-07 afaeb45f-d795-4fe0-b4ee-5b90816e6427 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11R-A115-07 afaeb45f-d795-4fe0-b4ee-5b90816e6427 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012774_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11R-A115-07 afaeb45f-d795-4fe0-b4ee-5b90816e6427 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012774_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11R-A115-07 afaeb45f-d795-4fe0-b4ee-5b90816e6427 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012774_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11R-A115-07 afaeb45f-d795-4fe0-b4ee-5b90816e6427 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_380696.TCGA-BH-A0W7-01A-11R-A115-07.110512_UNC9-SN296_0180_AC036NABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11R-A115-07 afaeb45f-d795-4fe0-b4ee-5b90816e6427 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_380698.TCGA-BH-A0W7-01A-11R-A115-07.110512_UNC9-SN296_0180_AC036NABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11R-A115-07 afaeb45f-d795-4fe0-b4ee-5b90816e6427 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_380770.TCGA-BH-A0W7-01A-11R-A115-07.110512_UNC9-SN296_0180_AC036NABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-01A TCGA-BH-A0W7-01A-11W-A12T-09 1e87fbcf-3dd5-4735-9306-5a3b6a0edb36 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-10A TCGA-BH-A0W7-10A-01D-A10Z-02 0089c75f-1a46-4f13-a89d-d567f1add1b1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-10A TCGA-BH-A0W7-10A-01D-A110-09 38761409-51cc-4347-a0fe-3c259e3a1219 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-10A TCGA-BH-A0W7-10A-01D-A110-09 38761409-51cc-4347-a0fe-3c259e3a1219 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-10A TCGA-BH-A0W7-10A-01D-A113-01 e84738d7-8d10-4f97-b32c-85aa8715d696 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-10A TCGA-BH-A0W7-10A-01D-A113-01 e84738d7-8d10-4f97-b32c-85aa8715d696 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A07_735286.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-BH-A0W7 TCGA-BH-A0W7-10A TCGA-BH-A0W7-10A-01D-A113-01 e84738d7-8d10-4f97-b32c-85aa8715d696 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A07_735286.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-10A TCGA-BH-A0W7-10A-01D-A113-01 e84738d7-8d10-4f97-b32c-85aa8715d696 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A07_735286.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-10A TCGA-BH-A0W7-10A-01D-A113-01 e84738d7-8d10-4f97-b32c-85aa8715d696 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A07_735286.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-10A TCGA-BH-A0W7-10A-01D-A113-01 e84738d7-8d10-4f97-b32c-85aa8715d696 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A07_735286.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-10A TCGA-BH-A0W7-10A-01D-A113-01 e84738d7-8d10-4f97-b32c-85aa8715d696 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A07_735286.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-10A TCGA-BH-A0W7-10A-01D-A113-01 e84738d7-8d10-4f97-b32c-85aa8715d696 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A07_735286.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-10A TCGA-BH-A0W7-10A-01D-A113-01 e84738d7-8d10-4f97-b32c-85aa8715d696 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A07_735286.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-BH-A0W7 TCGA-BH-A0W7-10A TCGA-BH-A0W7-10A-01W-A12U-09 64d1ef35-12b1-4ecd-a3f9-764275e426a3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0W7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11D-A106-02 3b6d6bc9-0fbe-4c17-b0f7-a7f9db6afb05 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0WA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11D-A107-01 35001085-6428-46a2-a1c7-a45970cac84f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0WA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11D-A107-01 35001085-6428-46a2-a1c7-a45970cac84f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B03_730972.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11D-A107-01 35001085-6428-46a2-a1c7-a45970cac84f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B03_730972.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11D-A107-01 35001085-6428-46a2-a1c7-a45970cac84f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B03_730972.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11D-A107-01 35001085-6428-46a2-a1c7-a45970cac84f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B03_730972.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11D-A107-01 35001085-6428-46a2-a1c7-a45970cac84f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B03_730972.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11D-A107-01 35001085-6428-46a2-a1c7-a45970cac84f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B03_730972.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11D-A107-01 35001085-6428-46a2-a1c7-a45970cac84f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B03_730972.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11D-A107-01 35001085-6428-46a2-a1c7-a45970cac84f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_B03_730972.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11D-A10A-05 407f25bf-642b-4b5a-89cb-1bdb086a12ad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0WA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11D-A10A-05 407f25bf-642b-4b5a-89cb-1bdb086a12ad DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486005_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11D-A10A-05 407f25bf-642b-4b5a-89cb-1bdb086a12ad DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0/6005486005_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.5.1.0 74 07-NOV-11 04.26.11.483000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11D-A10A-05 407f25bf-642b-4b5a-89cb-1bdb086a12ad DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-2.TCGA-BH-A0WA-01A-11D-A10A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.5.1.0 74 07-NOV-11 05.15.21.470000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11D-A10A-05 407f25bf-642b-4b5a-89cb-1bdb086a12ad DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0/jhu-usc.edu_BRCA.HumanMethylation450.5.lvl-3.TCGA-BH-A0WA-01A-11D-A10A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.5.1.0 74 07-NOV-11 05.44.21.755000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11D-A10G-09 4076f947-a1f0-4101-9a79-79828eb3bbe3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0WA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11D-A10G-09 4076f947-a1f0-4101-9a79-79828eb3bbe3 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11D-A10G-09 4076f947-a1f0-4101-9a79-79828eb3bbe3 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11D-A128-09 eddfbfb9-3ae8-449b-b870-46062a2571c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0WA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11D-A128-09 eddfbfb9-3ae8-449b-b870-46062a2571c1 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11R-A108-13 f3c8a0ef-174b-40a9-91f8-25b2eb4a0003 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0WA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11R-A108-13 f3c8a0ef-174b-40a9-91f8-25b2eb4a0003 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0WA-01A-11R-A108-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11R-A108-13 f3c8a0ef-174b-40a9-91f8-25b2eb4a0003 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-BH-A0WA-01A-11R-A108-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 74 19-OCT-11 03.27.01.962000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11R-A109-07 519e1ea1-6658-4978-9f3d-313d7cc1e0c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0WA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11R-A109-07 519e1ea1-6658-4978-9f3d-313d7cc1e0c1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0/US82800149_251976012687_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.6.0.0 74 24-JAN-11 11.31.26.033000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11R-A109-07 519e1ea1-6658-4978-9f3d-313d7cc1e0c1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0/US82800149_251976012687_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.6.0.0 74 24-JAN-11 11.27.45.804000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11R-A109-07 519e1ea1-6658-4978-9f3d-313d7cc1e0c1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0/US82800149_251976012687_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.6.0.0 74 24-JAN-11 11.28.28.912000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11R-A109-07 519e1ea1-6658-4978-9f3d-313d7cc1e0c1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_502699.TCGA-BH-A0WA-01A-11R-A109-07.110901_UNC12-SN629_0127_BC025UABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11R-A109-07 519e1ea1-6658-4978-9f3d-313d7cc1e0c1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_502727.TCGA-BH-A0WA-01A-11R-A109-07.110901_UNC12-SN629_0127_BC025UABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11R-A109-07 519e1ea1-6658-4978-9f3d-313d7cc1e0c1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_502781.TCGA-BH-A0WA-01A-11R-A109-07.110901_UNC12-SN629_0127_BC025UABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 74 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-01A TCGA-BH-A0WA-01A-11X-A10H-09 4b51f737-2e9b-4827-8d08-2b405e984f76 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0WA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-10A TCGA-BH-A0WA-10A-01D-A106-02 e71abe2d-6616-42f3-aa66-091a06d4b23b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0WA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-10A TCGA-BH-A0WA-10A-01D-A107-01 ea9e4637-4569-47c5-aab1-d3b6ecf12192 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0WA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-10A TCGA-BH-A0WA-10A-01D-A107-01 ea9e4637-4569-47c5-aab1-d3b6ecf12192 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A01_731026.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.74.1008.0 74 07-DEC-11 11.33.55.284000000 AM TCGA-BH-A0WA TCGA-BH-A0WA-10A TCGA-BH-A0WA-10A-01D-A107-01 ea9e4637-4569-47c5-aab1-d3b6ecf12192 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A01_731026.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-10A TCGA-BH-A0WA-10A-01D-A107-01 ea9e4637-4569-47c5-aab1-d3b6ecf12192 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A01_731026.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-10A TCGA-BH-A0WA-10A-01D-A107-01 ea9e4637-4569-47c5-aab1-d3b6ecf12192 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A01_731026.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-10A TCGA-BH-A0WA-10A-01D-A107-01 ea9e4637-4569-47c5-aab1-d3b6ecf12192 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A01_731026.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-10A TCGA-BH-A0WA-10A-01D-A107-01 ea9e4637-4569-47c5-aab1-d3b6ecf12192 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A01_731026.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-10A TCGA-BH-A0WA-10A-01D-A107-01 ea9e4637-4569-47c5-aab1-d3b6ecf12192 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A01_731026.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.74.1008.0 74 07-DEC-11 12.44.56.114000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-10A TCGA-BH-A0WA-10A-01D-A107-01 ea9e4637-4569-47c5-aab1-d3b6ecf12192 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0/SHUCK_p_TCGAb74and75_SNP_N_GenomeWideSNP_6_A01_731026.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.74.1008.0 74 07-DEC-11 01.00.11.079000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-10A TCGA-BH-A0WA-10A-01D-A10G-09 c892d259-602c-46d6-ba5a-81f14be0638c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0WA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-10A TCGA-BH-A0WA-10A-01D-A117-09 ad51aa61-d74c-430e-b8aa-1aae099e247d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0WA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-10A TCGA-BH-A0WA-10A-01D-A117-09 ad51aa61-d74c-430e-b8aa-1aae099e247d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0 74 22-JUL-11 04.53.19.115000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-10A TCGA-BH-A0WA-10A-01D-A117-09 ad51aa61-d74c-430e-b8aa-1aae099e247d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 74 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-10A TCGA-BH-A0WA-10A-01D-A128-09 bba9f20c-543f-4473-86b5-423c6fc22594 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0WA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A0WA TCGA-BH-A0WA-10A TCGA-BH-A0WA-10A-01X-A10H-09 51f440fb-9c2d-4264-8f8a-124aea62936a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.74.23.0/nationwidechildrens.org_biospecimen.TCGA-BH-A0WA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.74.23.0 74 12-JAN-12 08.49.09.258000000 PM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11D-A129-02 bbe4e1cc-7978-4b59-a262-7337916dbc09 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11D-A12A-01 df0ea333-0f5a-4da4-9242-f74a28e6a9ac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11D-A12A-01 df0ea333-0f5a-4da4-9242-f74a28e6a9ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E10_741550.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11D-A12A-01 df0ea333-0f5a-4da4-9242-f74a28e6a9ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E10_741550.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11D-A12A-01 df0ea333-0f5a-4da4-9242-f74a28e6a9ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E10_741550.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11D-A12A-01 df0ea333-0f5a-4da4-9242-f74a28e6a9ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E10_741550.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11D-A12A-01 df0ea333-0f5a-4da4-9242-f74a28e6a9ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E10_741550.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11D-A12A-01 df0ea333-0f5a-4da4-9242-f74a28e6a9ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E10_741550.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11D-A12A-01 df0ea333-0f5a-4da4-9242-f74a28e6a9ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E10_741550.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11D-A12A-01 df0ea333-0f5a-4da4-9242-f74a28e6a9ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E10_741550.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11D-A12B-09 d414b3fe-b768-4a98-b285-5284bffa66f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11D-A12B-09 d414b3fe-b768-4a98-b285-5284bffa66f9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11D-A12E-05 1e8d3b7d-e3fb-4523-86f8-e01bff366877 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11D-A12E-05 1e8d3b7d-e3fb-4523-86f8-e01bff366877 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18F-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11D-A12E-05 1e8d3b7d-e3fb-4523-86f8-e01bff366877 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18F-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11D-A12E-05 1e8d3b7d-e3fb-4523-86f8-e01bff366877 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18F-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11R-A12C-13 c7fc0493-48a0-4c1d-ae66-bb2c0411f1d0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11R-A12C-13 c7fc0493-48a0-4c1d-ae66-bb2c0411f1d0 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18F-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11R-A12C-13 c7fc0493-48a0-4c1d-ae66-bb2c0411f1d0 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18F-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11R-A12D-07 eed6d177-6cec-493a-b811-1779bebae72a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11R-A12D-07 eed6d177-6cec-493a-b811-1779bebae72a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012915_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11R-A12D-07 eed6d177-6cec-493a-b811-1779bebae72a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012915_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11R-A12D-07 eed6d177-6cec-493a-b811-1779bebae72a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012915_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11R-A12D-07 eed6d177-6cec-493a-b811-1779bebae72a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_385508.TCGA-BH-A18F-01A-11R-A12D-07.110711_UNC10-SN254_0242_AD0DK5ABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11R-A12D-07 eed6d177-6cec-493a-b811-1779bebae72a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_385513.TCGA-BH-A18F-01A-11R-A12D-07.110711_UNC10-SN254_0242_AD0DK5ABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11R-A12D-07 eed6d177-6cec-493a-b811-1779bebae72a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_385572.TCGA-BH-A18F-01A-11R-A12D-07.110711_UNC10-SN254_0242_AD0DK5ABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18F TCGA-BH-A18F-01A TCGA-BH-A18F-01A-11W-A12S-09 6832b040-5b6c-4dc5-a229-2cd1525a9188 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18F TCGA-BH-A18F-11A TCGA-BH-A18F-11A-22D-A129-02 a183f63d-ab93-4dee-8387-f64c555eeeaa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18F TCGA-BH-A18F-11A TCGA-BH-A18F-11A-22D-A12A-01 02155449-2a25-4e7f-ac89-d75619f6851e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18F TCGA-BH-A18F-11A TCGA-BH-A18F-11A-22D-A12A-01 02155449-2a25-4e7f-ac89-d75619f6851e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E11_741424.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18F TCGA-BH-A18F-11A TCGA-BH-A18F-11A-22D-A12A-01 02155449-2a25-4e7f-ac89-d75619f6851e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E11_741424.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18F TCGA-BH-A18F-11A TCGA-BH-A18F-11A-22D-A12A-01 02155449-2a25-4e7f-ac89-d75619f6851e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E11_741424.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18F TCGA-BH-A18F-11A TCGA-BH-A18F-11A-22D-A12A-01 02155449-2a25-4e7f-ac89-d75619f6851e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E11_741424.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18F TCGA-BH-A18F-11A TCGA-BH-A18F-11A-22D-A12A-01 02155449-2a25-4e7f-ac89-d75619f6851e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E11_741424.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18F TCGA-BH-A18F-11A TCGA-BH-A18F-11A-22D-A12A-01 02155449-2a25-4e7f-ac89-d75619f6851e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E11_741424.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18F TCGA-BH-A18F-11A TCGA-BH-A18F-11A-22D-A12A-01 02155449-2a25-4e7f-ac89-d75619f6851e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E11_741424.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18F TCGA-BH-A18F-11A TCGA-BH-A18F-11A-22D-A12A-01 02155449-2a25-4e7f-ac89-d75619f6851e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E11_741424.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18F TCGA-BH-A18F-11A TCGA-BH-A18F-11A-22D-A12B-09 8404ab78-054d-4cd1-b92e-951f3047ff45 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18F TCGA-BH-A18F-11A TCGA-BH-A18F-11A-22D-A12B-09 8404ab78-054d-4cd1-b92e-951f3047ff45 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18F TCGA-BH-A18F-11A TCGA-BH-A18F-11A-22D-A12E-05 171920f2-0ec9-42ad-ba7a-af893f2839fb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18F TCGA-BH-A18F-11A TCGA-BH-A18F-11A-22D-A12E-05 171920f2-0ec9-42ad-ba7a-af893f2839fb DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18F-11A-22D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18F TCGA-BH-A18F-11A TCGA-BH-A18F-11A-22D-A12E-05 171920f2-0ec9-42ad-ba7a-af893f2839fb DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18F-11A-22D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18F TCGA-BH-A18F-11A TCGA-BH-A18F-11A-22D-A12E-05 171920f2-0ec9-42ad-ba7a-af893f2839fb DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18F-11A-22D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18F TCGA-BH-A18F-11A TCGA-BH-A18F-11A-22W-A12S-09 156aaa61-1b63-48e6-8b13-9b9cbe7d03e8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18G TCGA-BH-A18G-01A TCGA-BH-A18G-01A-11D-A129-02 75f7f9c6-bc8b-4c5c-bc0e-eaba4123a170 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18G TCGA-BH-A18G-01A TCGA-BH-A18G-01A-11D-A12A-01 ee9101bf-b45d-41d3-bc63-16d9ca91e714 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18G TCGA-BH-A18G-01A TCGA-BH-A18G-01A-11D-A12A-01 ee9101bf-b45d-41d3-bc63-16d9ca91e714 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E12_741548.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18G TCGA-BH-A18G-01A TCGA-BH-A18G-01A-11D-A12A-01 ee9101bf-b45d-41d3-bc63-16d9ca91e714 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E12_741548.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18G TCGA-BH-A18G-01A TCGA-BH-A18G-01A-11D-A12A-01 ee9101bf-b45d-41d3-bc63-16d9ca91e714 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E12_741548.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18G TCGA-BH-A18G-01A TCGA-BH-A18G-01A-11D-A12A-01 ee9101bf-b45d-41d3-bc63-16d9ca91e714 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E12_741548.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18G TCGA-BH-A18G-01A TCGA-BH-A18G-01A-11D-A12A-01 ee9101bf-b45d-41d3-bc63-16d9ca91e714 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E12_741548.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18G TCGA-BH-A18G-01A TCGA-BH-A18G-01A-11D-A12A-01 ee9101bf-b45d-41d3-bc63-16d9ca91e714 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E12_741548.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18G TCGA-BH-A18G-01A TCGA-BH-A18G-01A-11D-A12A-01 ee9101bf-b45d-41d3-bc63-16d9ca91e714 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E12_741548.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18G TCGA-BH-A18G-01A TCGA-BH-A18G-01A-11D-A12A-01 ee9101bf-b45d-41d3-bc63-16d9ca91e714 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E12_741548.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18G TCGA-BH-A18G-01A TCGA-BH-A18G-01A-11D-A12B-09 5f080655-65bd-42af-8cde-15dc2d255f3c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18G TCGA-BH-A18G-01A TCGA-BH-A18G-01A-11D-A12E-05 d7dca9cf-0a60-47a6-95de-f0d0ce3daa9c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18G TCGA-BH-A18G-01A TCGA-BH-A18G-01A-11D-A12E-05 d7dca9cf-0a60-47a6-95de-f0d0ce3daa9c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18G-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18G TCGA-BH-A18G-01A TCGA-BH-A18G-01A-11D-A12E-05 d7dca9cf-0a60-47a6-95de-f0d0ce3daa9c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18G-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18G TCGA-BH-A18G-01A TCGA-BH-A18G-01A-11D-A12E-05 d7dca9cf-0a60-47a6-95de-f0d0ce3daa9c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18G-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18G TCGA-BH-A18G-01A TCGA-BH-A18G-01A-11R-A12C-13 0331d184-2f18-4ecf-a1e2-8b74bfaba145 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18G TCGA-BH-A18G-01A TCGA-BH-A18G-01A-11R-A12C-13 0331d184-2f18-4ecf-a1e2-8b74bfaba145 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18G-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18G TCGA-BH-A18G-01A TCGA-BH-A18G-01A-11R-A12C-13 0331d184-2f18-4ecf-a1e2-8b74bfaba145 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18G-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18G TCGA-BH-A18G-01A TCGA-BH-A18G-01A-11R-A12D-07 a8a7a335-8e21-4f24-b48b-8764caa21329 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18G TCGA-BH-A18G-01A TCGA-BH-A18G-01A-11R-A12D-07 a8a7a335-8e21-4f24-b48b-8764caa21329 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012920_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A18G TCGA-BH-A18G-01A TCGA-BH-A18G-01A-11R-A12D-07 a8a7a335-8e21-4f24-b48b-8764caa21329 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012920_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A18G TCGA-BH-A18G-01A TCGA-BH-A18G-01A-11R-A12D-07 a8a7a335-8e21-4f24-b48b-8764caa21329 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012920_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A18G TCGA-BH-A18G-01A TCGA-BH-A18G-01A-11R-A12D-07 a8a7a335-8e21-4f24-b48b-8764caa21329 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_847258.TCGA-BH-A18G-01A-11R-A12D-07.110711_UNC10-SN254_0242_AD0DK5ABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18G TCGA-BH-A18G-01A TCGA-BH-A18G-01A-11R-A12D-07 a8a7a335-8e21-4f24-b48b-8764caa21329 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_847279.TCGA-BH-A18G-01A-11R-A12D-07.110711_UNC10-SN254_0242_AD0DK5ABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18G TCGA-BH-A18G-01A TCGA-BH-A18G-01A-11R-A12D-07 a8a7a335-8e21-4f24-b48b-8764caa21329 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_847370.TCGA-BH-A18G-01A-11R-A12D-07.110711_UNC10-SN254_0242_AD0DK5ABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18G TCGA-BH-A18G-01A TCGA-BH-A18G-01A-11W-A12S-09 ba0e5795-5fb7-473b-a656-fae87bc7f786 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18G TCGA-BH-A18G-10A TCGA-BH-A18G-10A-01D-A129-02 539b54a6-0fb9-4349-8464-3982c90ce233 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18G TCGA-BH-A18G-10A TCGA-BH-A18G-10A-01D-A12A-01 6f0c62f3-48b9-4b6f-a308-2598f0409e5e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18G TCGA-BH-A18G-10A TCGA-BH-A18G-10A-01D-A12A-01 6f0c62f3-48b9-4b6f-a308-2598f0409e5e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C09_741444.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18G TCGA-BH-A18G-10A TCGA-BH-A18G-10A-01D-A12A-01 6f0c62f3-48b9-4b6f-a308-2598f0409e5e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C09_741444.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18G TCGA-BH-A18G-10A TCGA-BH-A18G-10A-01D-A12A-01 6f0c62f3-48b9-4b6f-a308-2598f0409e5e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C09_741444.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18G TCGA-BH-A18G-10A TCGA-BH-A18G-10A-01D-A12A-01 6f0c62f3-48b9-4b6f-a308-2598f0409e5e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C09_741444.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18G TCGA-BH-A18G-10A TCGA-BH-A18G-10A-01D-A12A-01 6f0c62f3-48b9-4b6f-a308-2598f0409e5e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C09_741444.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18G TCGA-BH-A18G-10A TCGA-BH-A18G-10A-01D-A12A-01 6f0c62f3-48b9-4b6f-a308-2598f0409e5e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C09_741444.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18G TCGA-BH-A18G-10A TCGA-BH-A18G-10A-01D-A12A-01 6f0c62f3-48b9-4b6f-a308-2598f0409e5e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C09_741444.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18G TCGA-BH-A18G-10A TCGA-BH-A18G-10A-01D-A12A-01 6f0c62f3-48b9-4b6f-a308-2598f0409e5e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C09_741444.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18G TCGA-BH-A18G-10A TCGA-BH-A18G-10A-01D-A12B-09 fdeda5fc-8cdb-45d8-bd01-1caa1c068af0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18G TCGA-BH-A18G-10A TCGA-BH-A18G-10A-01W-A12S-09 8e7c3d42-a24c-4b28-8e12-4c1f4895ef18 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11D-A129-02 69bd247b-2fa3-4d39-a510-720af2ce2751 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11D-A12A-01 cdcbf3a0-b1eb-4a63-b669-f7a6438c6902 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11D-A12A-01 cdcbf3a0-b1eb-4a63-b669-f7a6438c6902 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C12_741462.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11D-A12A-01 cdcbf3a0-b1eb-4a63-b669-f7a6438c6902 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C12_741462.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11D-A12A-01 cdcbf3a0-b1eb-4a63-b669-f7a6438c6902 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C12_741462.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11D-A12A-01 cdcbf3a0-b1eb-4a63-b669-f7a6438c6902 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C12_741462.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11D-A12A-01 cdcbf3a0-b1eb-4a63-b669-f7a6438c6902 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C12_741462.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11D-A12A-01 cdcbf3a0-b1eb-4a63-b669-f7a6438c6902 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C12_741462.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11D-A12A-01 cdcbf3a0-b1eb-4a63-b669-f7a6438c6902 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C12_741462.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11D-A12A-01 cdcbf3a0-b1eb-4a63-b669-f7a6438c6902 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C12_741462.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11D-A12B-09 d3c1b990-aae2-45f8-be28-8ccd192a0fab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11D-A12B-09 d3c1b990-aae2-45f8-be28-8ccd192a0fab Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11D-A12E-05 7b607aaa-b49e-46c3-b0f8-77e51cd6020f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11D-A12E-05 7b607aaa-b49e-46c3-b0f8-77e51cd6020f DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18H-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11D-A12E-05 7b607aaa-b49e-46c3-b0f8-77e51cd6020f DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18H-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11D-A12E-05 7b607aaa-b49e-46c3-b0f8-77e51cd6020f DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18H-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11R-A12C-13 681e21f8-430a-4412-946a-b116751033b1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11R-A12C-13 681e21f8-430a-4412-946a-b116751033b1 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18H-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11R-A12C-13 681e21f8-430a-4412-946a-b116751033b1 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18H-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11R-A12D-07 7bc7f99c-28d4-4b54-b9bd-53d5de00cab7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11R-A12D-07 7bc7f99c-28d4-4b54-b9bd-53d5de00cab7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012927_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11R-A12D-07 7bc7f99c-28d4-4b54-b9bd-53d5de00cab7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012927_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11R-A12D-07 7bc7f99c-28d4-4b54-b9bd-53d5de00cab7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012927_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11R-A12D-07 7bc7f99c-28d4-4b54-b9bd-53d5de00cab7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_385445.TCGA-BH-A18H-01A-11R-A12D-07.110711_UNC10-SN254_0242_AD0DK5ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11R-A12D-07 7bc7f99c-28d4-4b54-b9bd-53d5de00cab7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_385493.TCGA-BH-A18H-01A-11R-A12D-07.110711_UNC10-SN254_0242_AD0DK5ABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11R-A12D-07 7bc7f99c-28d4-4b54-b9bd-53d5de00cab7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_385546.TCGA-BH-A18H-01A-11R-A12D-07.110711_UNC10-SN254_0242_AD0DK5ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18H TCGA-BH-A18H-01A TCGA-BH-A18H-01A-11W-A12S-09 76fe5330-f117-4624-a026-d31bf5a6ed7f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18H TCGA-BH-A18H-10A TCGA-BH-A18H-10A-01D-A129-02 92afeb88-395c-4103-bbec-b0d56a587f2c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18H TCGA-BH-A18H-10A TCGA-BH-A18H-10A-01D-A12A-01 a8c9fa55-68f6-4d28-8979-951f5b9e0e78 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18H TCGA-BH-A18H-10A TCGA-BH-A18H-10A-01D-A12A-01 a8c9fa55-68f6-4d28-8979-951f5b9e0e78 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F09_741494.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18H TCGA-BH-A18H-10A TCGA-BH-A18H-10A-01D-A12A-01 a8c9fa55-68f6-4d28-8979-951f5b9e0e78 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F09_741494.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18H TCGA-BH-A18H-10A TCGA-BH-A18H-10A-01D-A12A-01 a8c9fa55-68f6-4d28-8979-951f5b9e0e78 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F09_741494.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18H TCGA-BH-A18H-10A TCGA-BH-A18H-10A-01D-A12A-01 a8c9fa55-68f6-4d28-8979-951f5b9e0e78 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F09_741494.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18H TCGA-BH-A18H-10A TCGA-BH-A18H-10A-01D-A12A-01 a8c9fa55-68f6-4d28-8979-951f5b9e0e78 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F09_741494.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18H TCGA-BH-A18H-10A TCGA-BH-A18H-10A-01D-A12A-01 a8c9fa55-68f6-4d28-8979-951f5b9e0e78 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F09_741494.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18H TCGA-BH-A18H-10A TCGA-BH-A18H-10A-01D-A12A-01 a8c9fa55-68f6-4d28-8979-951f5b9e0e78 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F09_741494.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18H TCGA-BH-A18H-10A TCGA-BH-A18H-10A-01D-A12A-01 a8c9fa55-68f6-4d28-8979-951f5b9e0e78 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F09_741494.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18H TCGA-BH-A18H-10A TCGA-BH-A18H-10A-01D-A12B-09 7f061cf1-1d86-453c-9817-cf0cba8ea87a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18H TCGA-BH-A18H-10A TCGA-BH-A18H-10A-01D-A12B-09 7f061cf1-1d86-453c-9817-cf0cba8ea87a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18H TCGA-BH-A18H-10A TCGA-BH-A18H-10A-01W-A12S-09 ec4acbf2-d0d3-4c3e-adc0-b2f274a09296 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11D-A129-02 13b9fdf5-b080-4c76-9e68-c447d812c286 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11D-A12A-01 aa8b87f4-9e6b-4da1-9942-1b2c86f3fcc0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11D-A12A-01 aa8b87f4-9e6b-4da1-9942-1b2c86f3fcc0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G07_741468.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11D-A12A-01 aa8b87f4-9e6b-4da1-9942-1b2c86f3fcc0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G07_741468.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11D-A12A-01 aa8b87f4-9e6b-4da1-9942-1b2c86f3fcc0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G07_741468.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11D-A12A-01 aa8b87f4-9e6b-4da1-9942-1b2c86f3fcc0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G07_741468.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11D-A12A-01 aa8b87f4-9e6b-4da1-9942-1b2c86f3fcc0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G07_741468.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11D-A12A-01 aa8b87f4-9e6b-4da1-9942-1b2c86f3fcc0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G07_741468.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11D-A12A-01 aa8b87f4-9e6b-4da1-9942-1b2c86f3fcc0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G07_741468.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11D-A12A-01 aa8b87f4-9e6b-4da1-9942-1b2c86f3fcc0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G07_741468.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11D-A12B-09 f0ca4831-d56d-4bae-b304-bb43c5d2f09b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11D-A12B-09 f0ca4831-d56d-4bae-b304-bb43c5d2f09b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11D-A12E-05 63ea1c01-87e8-42ad-ab2d-0b3ace6598fb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11D-A12E-05 63ea1c01-87e8-42ad-ab2d-0b3ace6598fb DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18I-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11D-A12E-05 63ea1c01-87e8-42ad-ab2d-0b3ace6598fb DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18I-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11D-A12E-05 63ea1c01-87e8-42ad-ab2d-0b3ace6598fb DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18I-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11R-A12C-13 7b855c96-b048-4326-a345-827ce53d95b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11R-A12C-13 7b855c96-b048-4326-a345-827ce53d95b0 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18I-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11R-A12C-13 7b855c96-b048-4326-a345-827ce53d95b0 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18I-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11R-A12D-07 844b3442-a740-4cb4-a1fb-b481c552cc88 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11R-A12D-07 844b3442-a740-4cb4-a1fb-b481c552cc88 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012865_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11R-A12D-07 844b3442-a740-4cb4-a1fb-b481c552cc88 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012865_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11R-A12D-07 844b3442-a740-4cb4-a1fb-b481c552cc88 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012865_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11R-A12D-07 844b3442-a740-4cb4-a1fb-b481c552cc88 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_705974.TCGA-BH-A18I-01A-11R-A12D-07.110628_UNC10-SN254_0239_BD0CTRABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11R-A12D-07 844b3442-a740-4cb4-a1fb-b481c552cc88 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_706253.TCGA-BH-A18I-01A-11R-A12D-07.110628_UNC10-SN254_0239_BD0CTRABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11R-A12D-07 844b3442-a740-4cb4-a1fb-b481c552cc88 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_706345.TCGA-BH-A18I-01A-11R-A12D-07.110628_UNC10-SN254_0239_BD0CTRABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18I TCGA-BH-A18I-01A TCGA-BH-A18I-01A-11W-A12S-09 566d6179-e6af-47c0-a6c3-b36c9e9f3f19 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18I TCGA-BH-A18I-10A TCGA-BH-A18I-10A-01D-A129-02 a1a0f35e-4e90-4cac-936c-102bd1142410 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18I TCGA-BH-A18I-10A TCGA-BH-A18I-10A-01D-A12A-01 56e2c492-8a9e-42fe-8024-a41300e46e56 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18I TCGA-BH-A18I-10A TCGA-BH-A18I-10A-01D-A12A-01 56e2c492-8a9e-42fe-8024-a41300e46e56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G02_741418.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18I TCGA-BH-A18I-10A TCGA-BH-A18I-10A-01D-A12A-01 56e2c492-8a9e-42fe-8024-a41300e46e56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G02_741418.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18I TCGA-BH-A18I-10A TCGA-BH-A18I-10A-01D-A12A-01 56e2c492-8a9e-42fe-8024-a41300e46e56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G02_741418.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18I TCGA-BH-A18I-10A TCGA-BH-A18I-10A-01D-A12A-01 56e2c492-8a9e-42fe-8024-a41300e46e56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G02_741418.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18I TCGA-BH-A18I-10A TCGA-BH-A18I-10A-01D-A12A-01 56e2c492-8a9e-42fe-8024-a41300e46e56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G02_741418.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18I TCGA-BH-A18I-10A TCGA-BH-A18I-10A-01D-A12A-01 56e2c492-8a9e-42fe-8024-a41300e46e56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G02_741418.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18I TCGA-BH-A18I-10A TCGA-BH-A18I-10A-01D-A12A-01 56e2c492-8a9e-42fe-8024-a41300e46e56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G02_741418.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18I TCGA-BH-A18I-10A TCGA-BH-A18I-10A-01D-A12A-01 56e2c492-8a9e-42fe-8024-a41300e46e56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G02_741418.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18I TCGA-BH-A18I-10A TCGA-BH-A18I-10A-01D-A12B-09 1928c46f-5e68-4b04-b9e8-b3f0363684a0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18I TCGA-BH-A18I-10A TCGA-BH-A18I-10A-01D-A12B-09 1928c46f-5e68-4b04-b9e8-b3f0363684a0 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18I TCGA-BH-A18I-10A TCGA-BH-A18I-10A-01W-A12S-09 6878977d-720d-437b-bf87-58dd075e38ac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11D-A129-02 5c50b44e-b11e-4598-b28a-7978bf976b0d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11D-A12A-01 eedb1e37-42d4-42d9-987f-e52dee3150e2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11D-A12A-01 eedb1e37-42d4-42d9-987f-e52dee3150e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A01_741562.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11D-A12A-01 eedb1e37-42d4-42d9-987f-e52dee3150e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A01_741562.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11D-A12A-01 eedb1e37-42d4-42d9-987f-e52dee3150e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A01_741562.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11D-A12A-01 eedb1e37-42d4-42d9-987f-e52dee3150e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A01_741562.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11D-A12A-01 eedb1e37-42d4-42d9-987f-e52dee3150e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A01_741562.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11D-A12A-01 eedb1e37-42d4-42d9-987f-e52dee3150e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A01_741562.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11D-A12A-01 eedb1e37-42d4-42d9-987f-e52dee3150e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A01_741562.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11D-A12A-01 eedb1e37-42d4-42d9-987f-e52dee3150e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A01_741562.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11D-A12B-09 fd9923db-2a27-432e-a0c6-4c44e6ee1f53 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11D-A12B-09 fd9923db-2a27-432e-a0c6-4c44e6ee1f53 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11D-A12E-05 4d62a696-bb51-4785-986c-3f195182add3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11D-A12E-05 4d62a696-bb51-4785-986c-3f195182add3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18J-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11D-A12E-05 4d62a696-bb51-4785-986c-3f195182add3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18J-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11D-A12E-05 4d62a696-bb51-4785-986c-3f195182add3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18J-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11R-A12C-13 7dc5cf7c-7ae9-47e9-9964-c968a4b8a3cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11R-A12C-13 7dc5cf7c-7ae9-47e9-9964-c968a4b8a3cb miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18J-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11R-A12C-13 7dc5cf7c-7ae9-47e9-9964-c968a4b8a3cb miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18J-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11R-A12D-07 56d889ba-6484-4940-ae85-1373ce4255b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11R-A12D-07 56d889ba-6484-4940-ae85-1373ce4255b9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012873_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11R-A12D-07 56d889ba-6484-4940-ae85-1373ce4255b9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012873_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11R-A12D-07 56d889ba-6484-4940-ae85-1373ce4255b9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012873_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11R-A12D-07 56d889ba-6484-4940-ae85-1373ce4255b9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_409430.TCGA-BH-A18J-01A-11R-A12D-07.110628_UNC10-SN254_0239_BD0CTRABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11R-A12D-07 56d889ba-6484-4940-ae85-1373ce4255b9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_409437.TCGA-BH-A18J-01A-11R-A12D-07.110628_UNC10-SN254_0239_BD0CTRABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11R-A12D-07 56d889ba-6484-4940-ae85-1373ce4255b9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_409459.TCGA-BH-A18J-01A-11R-A12D-07.110628_UNC10-SN254_0239_BD0CTRABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18J TCGA-BH-A18J-01A TCGA-BH-A18J-01A-11W-A12S-09 42c1df18-8405-4227-9205-59fd4a9705bb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31D-A129-02 329cd36e-7ce2-476d-b860-9ed3df1cb1a9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31D-A12A-01 3436987b-0218-4a1d-b08b-76cc10a2ed7f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31D-A12A-01 3436987b-0218-4a1d-b08b-76cc10a2ed7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D09_741542.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31D-A12A-01 3436987b-0218-4a1d-b08b-76cc10a2ed7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D09_741542.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31D-A12A-01 3436987b-0218-4a1d-b08b-76cc10a2ed7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D09_741542.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31D-A12A-01 3436987b-0218-4a1d-b08b-76cc10a2ed7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D09_741542.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31D-A12A-01 3436987b-0218-4a1d-b08b-76cc10a2ed7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D09_741542.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31D-A12A-01 3436987b-0218-4a1d-b08b-76cc10a2ed7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D09_741542.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31D-A12A-01 3436987b-0218-4a1d-b08b-76cc10a2ed7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D09_741542.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31D-A12A-01 3436987b-0218-4a1d-b08b-76cc10a2ed7f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D09_741542.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31D-A12B-09 c5149cdb-2765-4c64-8f19-308562782032 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31D-A12B-09 c5149cdb-2765-4c64-8f19-308562782032 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31D-A12E-05 3dac98fe-1b94-4e80-9157-bf4cbf5b3ad4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31D-A12E-05 3dac98fe-1b94-4e80-9157-bf4cbf5b3ad4 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18J-11A-31D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31D-A12E-05 3dac98fe-1b94-4e80-9157-bf4cbf5b3ad4 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18J-11A-31D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31D-A12E-05 3dac98fe-1b94-4e80-9157-bf4cbf5b3ad4 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18J-11A-31D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31R-A12C-13 77a7401d-e707-4166-ac3e-21f030a52ef7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31R-A12C-13 77a7401d-e707-4166-ac3e-21f030a52ef7 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18J-11A-31R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31R-A12C-13 77a7401d-e707-4166-ac3e-21f030a52ef7 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18J-11A-31R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31R-A12D-07 9fa440b0-6e8d-4c48-a425-50abc2682f6e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31R-A12D-07 9fa440b0-6e8d-4c48-a425-50abc2682f6e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012912_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31R-A12D-07 9fa440b0-6e8d-4c48-a425-50abc2682f6e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012912_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31R-A12D-07 9fa440b0-6e8d-4c48-a425-50abc2682f6e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012912_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31R-A12D-07 9fa440b0-6e8d-4c48-a425-50abc2682f6e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_385573.TCGA-BH-A18J-11A-31R-A12D-07.110711_UNC10-SN254_0242_AD0DK5ABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31R-A12D-07 9fa440b0-6e8d-4c48-a425-50abc2682f6e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_385611.TCGA-BH-A18J-11A-31R-A12D-07.110711_UNC10-SN254_0242_AD0DK5ABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31R-A12D-07 9fa440b0-6e8d-4c48-a425-50abc2682f6e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_385630.TCGA-BH-A18J-11A-31R-A12D-07.110711_UNC10-SN254_0242_AD0DK5ABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18J TCGA-BH-A18J-11A TCGA-BH-A18J-11A-31W-A12S-09 7ae79beb-f05a-4a69-a016-50a197124198 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11D-A129-02 0c6e46c6-eb63-42f5-95c7-352177e5031f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11D-A12A-01 c6914b68-40d4-4f98-ae22-92a713b29df3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11D-A12A-01 c6914b68-40d4-4f98-ae22-92a713b29df3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A05_741580.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11D-A12A-01 c6914b68-40d4-4f98-ae22-92a713b29df3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A05_741580.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11D-A12A-01 c6914b68-40d4-4f98-ae22-92a713b29df3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A05_741580.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11D-A12A-01 c6914b68-40d4-4f98-ae22-92a713b29df3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A05_741580.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11D-A12A-01 c6914b68-40d4-4f98-ae22-92a713b29df3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A05_741580.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11D-A12A-01 c6914b68-40d4-4f98-ae22-92a713b29df3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A05_741580.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11D-A12A-01 c6914b68-40d4-4f98-ae22-92a713b29df3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A05_741580.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11D-A12A-01 c6914b68-40d4-4f98-ae22-92a713b29df3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A05_741580.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11D-A12B-09 f75de986-bc8a-4ffe-9b35-011eee3a1446 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11D-A12B-09 f75de986-bc8a-4ffe-9b35-011eee3a1446 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11D-A12E-05 1bcee5da-c231-42a0-b1e6-d482893e5dfd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11D-A12E-05 1bcee5da-c231-42a0-b1e6-d482893e5dfd DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18K-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11D-A12E-05 1bcee5da-c231-42a0-b1e6-d482893e5dfd DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18K-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11D-A12E-05 1bcee5da-c231-42a0-b1e6-d482893e5dfd DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18K-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11R-A12C-13 7b734f9d-e3d6-4a7e-8e51-10f0ddb50aea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11R-A12C-13 7b734f9d-e3d6-4a7e-8e51-10f0ddb50aea miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18K-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11R-A12C-13 7b734f9d-e3d6-4a7e-8e51-10f0ddb50aea miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18K-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11R-A12D-07 78e00469-0dd6-490e-93f1-068b9a386839 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11R-A12D-07 78e00469-0dd6-490e-93f1-068b9a386839 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012881_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11R-A12D-07 78e00469-0dd6-490e-93f1-068b9a386839 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012881_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11R-A12D-07 78e00469-0dd6-490e-93f1-068b9a386839 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012881_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11R-A12D-07 78e00469-0dd6-490e-93f1-068b9a386839 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439311.TCGA-BH-A18K-01A-11R-A12D-07.110715_UNC14-SN744_0142_AB099EABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11R-A12D-07 78e00469-0dd6-490e-93f1-068b9a386839 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439372.TCGA-BH-A18K-01A-11R-A12D-07.110715_UNC14-SN744_0142_AB099EABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11R-A12D-07 78e00469-0dd6-490e-93f1-068b9a386839 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439525.TCGA-BH-A18K-01A-11R-A12D-07.110715_UNC14-SN744_0142_AB099EABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18K TCGA-BH-A18K-01A TCGA-BH-A18K-01A-11W-A12S-09 748dfb16-a103-4bd3-9382-b6f2187e4d8d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13D-A129-02 26108b6b-7f48-4e36-ac71-363de5b00f38 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13D-A12A-01 5d888b1b-c81f-43ed-8724-106cd913a478 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13D-A12A-01 5d888b1b-c81f-43ed-8724-106cd913a478 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G09_741414.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13D-A12A-01 5d888b1b-c81f-43ed-8724-106cd913a478 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G09_741414.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13D-A12A-01 5d888b1b-c81f-43ed-8724-106cd913a478 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G09_741414.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13D-A12A-01 5d888b1b-c81f-43ed-8724-106cd913a478 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G09_741414.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13D-A12A-01 5d888b1b-c81f-43ed-8724-106cd913a478 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G09_741414.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13D-A12A-01 5d888b1b-c81f-43ed-8724-106cd913a478 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G09_741414.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13D-A12A-01 5d888b1b-c81f-43ed-8724-106cd913a478 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G09_741414.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13D-A12A-01 5d888b1b-c81f-43ed-8724-106cd913a478 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G09_741414.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13D-A12B-09 1a1312ef-4a37-445c-80e5-529fdf7827ee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13D-A12B-09 1a1312ef-4a37-445c-80e5-529fdf7827ee Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13D-A12E-05 faa4238c-3d29-4c6f-8790-e800f0c1f7db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13D-A12E-05 faa4238c-3d29-4c6f-8790-e800f0c1f7db DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18K-11A-13D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13D-A12E-05 faa4238c-3d29-4c6f-8790-e800f0c1f7db DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18K-11A-13D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13D-A12E-05 faa4238c-3d29-4c6f-8790-e800f0c1f7db DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18K-11A-13D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13R-A12C-13 391ae250-4e1b-483b-95f3-d87ddcd24268 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13R-A12C-13 391ae250-4e1b-483b-95f3-d87ddcd24268 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18K-11A-13R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13R-A12C-13 391ae250-4e1b-483b-95f3-d87ddcd24268 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18K-11A-13R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13R-A12D-07 dc55c016-0e33-46b0-ac5e-f854c667a378 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13R-A12D-07 dc55c016-0e33-46b0-ac5e-f854c667a378 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013011_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13R-A12D-07 dc55c016-0e33-46b0-ac5e-f854c667a378 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013011_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13R-A12D-07 dc55c016-0e33-46b0-ac5e-f854c667a378 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013011_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13R-A12D-07 dc55c016-0e33-46b0-ac5e-f854c667a378 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_381167.TCGA-BH-A18K-11A-13R-A12D-07.110714_UNC13-SN749_0082_AD0DGMABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13R-A12D-07 dc55c016-0e33-46b0-ac5e-f854c667a378 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_381187.TCGA-BH-A18K-11A-13R-A12D-07.110714_UNC13-SN749_0082_AD0DGMABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13R-A12D-07 dc55c016-0e33-46b0-ac5e-f854c667a378 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_381209.TCGA-BH-A18K-11A-13R-A12D-07.110714_UNC13-SN749_0082_AD0DGMABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18K TCGA-BH-A18K-11A TCGA-BH-A18K-11A-13W-A12S-09 6f646a35-a444-49c9-b598-fe8349db3d88 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32D-A129-02 04927ed0-18ea-478f-b0c7-8e59822f0868 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32D-A12A-01 d814b694-f289-4784-bf97-2d21aef93e18 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32D-A12A-01 d814b694-f289-4784-bf97-2d21aef93e18 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H01_741520.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32D-A12A-01 d814b694-f289-4784-bf97-2d21aef93e18 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H01_741520.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32D-A12A-01 d814b694-f289-4784-bf97-2d21aef93e18 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H01_741520.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32D-A12A-01 d814b694-f289-4784-bf97-2d21aef93e18 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H01_741520.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32D-A12A-01 d814b694-f289-4784-bf97-2d21aef93e18 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H01_741520.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32D-A12A-01 d814b694-f289-4784-bf97-2d21aef93e18 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H01_741520.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32D-A12A-01 d814b694-f289-4784-bf97-2d21aef93e18 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H01_741520.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32D-A12A-01 d814b694-f289-4784-bf97-2d21aef93e18 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H01_741520.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32D-A12B-09 883cd3c9-2681-4822-8b22-29149a027514 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32D-A12B-09 883cd3c9-2681-4822-8b22-29149a027514 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32D-A12E-05 efad6656-31c3-4628-b7f1-341a91a1d9f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32D-A12E-05 efad6656-31c3-4628-b7f1-341a91a1d9f8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18L-01A-32D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32D-A12E-05 efad6656-31c3-4628-b7f1-341a91a1d9f8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18L-01A-32D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32D-A12E-05 efad6656-31c3-4628-b7f1-341a91a1d9f8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18L-01A-32D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32R-A12C-13 df02f4e3-0df9-48b8-aa41-f39b501965fc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32R-A12C-13 df02f4e3-0df9-48b8-aa41-f39b501965fc miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18L-01A-32R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32R-A12C-13 df02f4e3-0df9-48b8-aa41-f39b501965fc miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18L-01A-32R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32R-A12D-07 c3604281-d909-4819-a90e-a1081b1e9d7f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32R-A12D-07 c3604281-d909-4819-a90e-a1081b1e9d7f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012890_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32R-A12D-07 c3604281-d909-4819-a90e-a1081b1e9d7f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012890_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32R-A12D-07 c3604281-d909-4819-a90e-a1081b1e9d7f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012890_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32R-A12D-07 c3604281-d909-4819-a90e-a1081b1e9d7f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439607.TCGA-BH-A18L-01A-32R-A12D-07.110715_UNC10-SN254_0245_BD0DG6ABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32R-A12D-07 c3604281-d909-4819-a90e-a1081b1e9d7f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439615.TCGA-BH-A18L-01A-32R-A12D-07.110715_UNC10-SN254_0245_BD0DG6ABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32R-A12D-07 c3604281-d909-4819-a90e-a1081b1e9d7f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439718.TCGA-BH-A18L-01A-32R-A12D-07.110715_UNC10-SN254_0245_BD0DG6ABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18L TCGA-BH-A18L-01A TCGA-BH-A18L-01A-32W-A12S-09 4d68ed08-b11c-485c-b456-1103e9b028d4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42D-A129-02 05b8420d-1920-4997-98d1-5e15f194a033 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42D-A12A-01 aec4371a-e3c9-4ce8-bde7-827e093d6606 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42D-A12A-01 aec4371a-e3c9-4ce8-bde7-827e093d6606 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B09_741578.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42D-A12A-01 aec4371a-e3c9-4ce8-bde7-827e093d6606 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B09_741578.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42D-A12A-01 aec4371a-e3c9-4ce8-bde7-827e093d6606 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B09_741578.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42D-A12A-01 aec4371a-e3c9-4ce8-bde7-827e093d6606 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B09_741578.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42D-A12A-01 aec4371a-e3c9-4ce8-bde7-827e093d6606 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B09_741578.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42D-A12A-01 aec4371a-e3c9-4ce8-bde7-827e093d6606 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B09_741578.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42D-A12A-01 aec4371a-e3c9-4ce8-bde7-827e093d6606 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B09_741578.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42D-A12A-01 aec4371a-e3c9-4ce8-bde7-827e093d6606 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B09_741578.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42D-A12B-09 dc231f7a-c0b8-4639-9885-06ec9a0405a0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42D-A12B-09 dc231f7a-c0b8-4639-9885-06ec9a0405a0 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42D-A12E-05 02585ddf-6869-4c92-86dc-1b584f37a808 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42D-A12E-05 02585ddf-6869-4c92-86dc-1b584f37a808 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18L-11A-42D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42D-A12E-05 02585ddf-6869-4c92-86dc-1b584f37a808 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18L-11A-42D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42D-A12E-05 02585ddf-6869-4c92-86dc-1b584f37a808 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18L-11A-42D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42R-A12C-13 fca1c727-cb68-4e77-aa41-56b53510ab5d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42R-A12C-13 fca1c727-cb68-4e77-aa41-56b53510ab5d miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18L-11A-42R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42R-A12C-13 fca1c727-cb68-4e77-aa41-56b53510ab5d miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18L-11A-42R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42R-A12D-07 0b937a20-66d4-4d05-bf50-4828cead9c92 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42R-A12D-07 0b937a20-66d4-4d05-bf50-4828cead9c92 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012925_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42R-A12D-07 0b937a20-66d4-4d05-bf50-4828cead9c92 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012925_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42R-A12D-07 0b937a20-66d4-4d05-bf50-4828cead9c92 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012925_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42R-A12D-07 0b937a20-66d4-4d05-bf50-4828cead9c92 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_381186.TCGA-BH-A18L-11A-42R-A12D-07.110714_UNC13-SN749_0082_AD0DGMABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42R-A12D-07 0b937a20-66d4-4d05-bf50-4828cead9c92 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_381207.TCGA-BH-A18L-11A-42R-A12D-07.110714_UNC13-SN749_0082_AD0DGMABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42R-A12D-07 0b937a20-66d4-4d05-bf50-4828cead9c92 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_381297.TCGA-BH-A18L-11A-42R-A12D-07.110714_UNC13-SN749_0082_AD0DGMABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18L TCGA-BH-A18L-11A TCGA-BH-A18L-11A-42W-A12S-09 23103053-b5b5-4ece-9de5-71889836bada Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11D-A129-02 a1f7bad5-d700-4263-8a48-3c391dd430e8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11D-A12A-01 c642e766-98e7-4ea8-907a-8390e7425df2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11D-A12A-01 c642e766-98e7-4ea8-907a-8390e7425df2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E06_741482.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11D-A12A-01 c642e766-98e7-4ea8-907a-8390e7425df2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E06_741482.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11D-A12A-01 c642e766-98e7-4ea8-907a-8390e7425df2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E06_741482.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11D-A12A-01 c642e766-98e7-4ea8-907a-8390e7425df2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E06_741482.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11D-A12A-01 c642e766-98e7-4ea8-907a-8390e7425df2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E06_741482.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11D-A12A-01 c642e766-98e7-4ea8-907a-8390e7425df2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E06_741482.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11D-A12A-01 c642e766-98e7-4ea8-907a-8390e7425df2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E06_741482.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11D-A12A-01 c642e766-98e7-4ea8-907a-8390e7425df2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E06_741482.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11D-A12B-09 0e548c1e-cbb7-4432-8112-bb262a1ef9d9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11D-A12B-09 0e548c1e-cbb7-4432-8112-bb262a1ef9d9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11D-A12E-05 cea8079d-7439-40e2-b63b-e9f75b3d94cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11D-A12E-05 cea8079d-7439-40e2-b63b-e9f75b3d94cb DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18M-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11D-A12E-05 cea8079d-7439-40e2-b63b-e9f75b3d94cb DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18M-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11D-A12E-05 cea8079d-7439-40e2-b63b-e9f75b3d94cb DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18M-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11R-A12C-13 86ffc5ee-112e-4ac9-8465-a9a307eaaacd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11R-A12C-13 86ffc5ee-112e-4ac9-8465-a9a307eaaacd miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18M-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11R-A12C-13 86ffc5ee-112e-4ac9-8465-a9a307eaaacd miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18M-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11R-A12D-07 4dfbdec6-1911-412c-9873-f6782ab8ff66 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11R-A12D-07 4dfbdec6-1911-412c-9873-f6782ab8ff66 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012908_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11R-A12D-07 4dfbdec6-1911-412c-9873-f6782ab8ff66 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012908_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11R-A12D-07 4dfbdec6-1911-412c-9873-f6782ab8ff66 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012908_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11R-A12D-07 4dfbdec6-1911-412c-9873-f6782ab8ff66 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439613.TCGA-BH-A18M-01A-11R-A12D-07.110715_UNC10-SN254_0245_BD0DG6ABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11R-A12D-07 4dfbdec6-1911-412c-9873-f6782ab8ff66 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439616.TCGA-BH-A18M-01A-11R-A12D-07.110715_UNC10-SN254_0245_BD0DG6ABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11R-A12D-07 4dfbdec6-1911-412c-9873-f6782ab8ff66 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439652.TCGA-BH-A18M-01A-11R-A12D-07.110715_UNC10-SN254_0245_BD0DG6ABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18M TCGA-BH-A18M-01A TCGA-BH-A18M-01A-11W-A12S-09 fd1eeec1-9434-4b6e-a856-49e6101c057c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33D-A129-02 7af3a367-b9a8-4e4a-aa54-d60c6e24ffd0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33D-A12A-01 4b95cc26-32a0-473d-821b-e3fa0891646d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33D-A12A-01 4b95cc26-32a0-473d-821b-e3fa0891646d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E08_741470.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33D-A12A-01 4b95cc26-32a0-473d-821b-e3fa0891646d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E08_741470.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33D-A12A-01 4b95cc26-32a0-473d-821b-e3fa0891646d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E08_741470.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33D-A12A-01 4b95cc26-32a0-473d-821b-e3fa0891646d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E08_741470.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33D-A12A-01 4b95cc26-32a0-473d-821b-e3fa0891646d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E08_741470.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33D-A12A-01 4b95cc26-32a0-473d-821b-e3fa0891646d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E08_741470.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33D-A12A-01 4b95cc26-32a0-473d-821b-e3fa0891646d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E08_741470.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33D-A12A-01 4b95cc26-32a0-473d-821b-e3fa0891646d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E08_741470.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33D-A12B-09 24bf6da8-6015-4a98-affd-0a172d7d3265 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33D-A12B-09 24bf6da8-6015-4a98-affd-0a172d7d3265 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33D-A12E-05 d95595a7-790b-4842-849c-7ebe3fd5197e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33D-A12E-05 d95595a7-790b-4842-849c-7ebe3fd5197e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18M-11A-33D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33D-A12E-05 d95595a7-790b-4842-849c-7ebe3fd5197e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18M-11A-33D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33D-A12E-05 d95595a7-790b-4842-849c-7ebe3fd5197e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18M-11A-33D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33R-A12C-13 b70be93b-feee-46d3-a5bd-58171d8981f0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33R-A12C-13 b70be93b-feee-46d3-a5bd-58171d8981f0 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18M-11A-33R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33R-A12C-13 b70be93b-feee-46d3-a5bd-58171d8981f0 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18M-11A-33R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33R-A12D-07 2147e537-16f0-4bc3-a87f-572f8dcb9191 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33R-A12D-07 2147e537-16f0-4bc3-a87f-572f8dcb9191 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012936_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33R-A12D-07 2147e537-16f0-4bc3-a87f-572f8dcb9191 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012936_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33R-A12D-07 2147e537-16f0-4bc3-a87f-572f8dcb9191 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012936_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33R-A12D-07 2147e537-16f0-4bc3-a87f-572f8dcb9191 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_381152.TCGA-BH-A18M-11A-33R-A12D-07.110714_UNC13-SN749_0082_AD0DGMABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33R-A12D-07 2147e537-16f0-4bc3-a87f-572f8dcb9191 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_381219.TCGA-BH-A18M-11A-33R-A12D-07.110714_UNC13-SN749_0082_AD0DGMABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33R-A12D-07 2147e537-16f0-4bc3-a87f-572f8dcb9191 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_381287.TCGA-BH-A18M-11A-33R-A12D-07.110714_UNC13-SN749_0082_AD0DGMABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18M TCGA-BH-A18M-11A TCGA-BH-A18M-11A-33W-A12S-09 de2dc29a-e2ff-46b5-a3f6-6b3c06f867a3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11D-A129-02 7233decd-a722-4361-aa74-90689b929483 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11D-A12A-01 40ef83f0-cb32-4191-a440-3fcc76d1148f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11D-A12A-01 40ef83f0-cb32-4191-a440-3fcc76d1148f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C03_741400.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11D-A12A-01 40ef83f0-cb32-4191-a440-3fcc76d1148f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C03_741400.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11D-A12A-01 40ef83f0-cb32-4191-a440-3fcc76d1148f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C03_741400.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11D-A12A-01 40ef83f0-cb32-4191-a440-3fcc76d1148f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C03_741400.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11D-A12A-01 40ef83f0-cb32-4191-a440-3fcc76d1148f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C03_741400.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11D-A12A-01 40ef83f0-cb32-4191-a440-3fcc76d1148f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C03_741400.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11D-A12A-01 40ef83f0-cb32-4191-a440-3fcc76d1148f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C03_741400.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11D-A12A-01 40ef83f0-cb32-4191-a440-3fcc76d1148f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C03_741400.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11D-A12B-09 13c38ac4-c410-4602-83e3-9b80b4f93839 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11D-A12B-09 13c38ac4-c410-4602-83e3-9b80b4f93839 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11D-A12E-05 fa526dc0-333d-41bf-8992-584391be1f84 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11D-A12E-05 fa526dc0-333d-41bf-8992-584391be1f84 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18N-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11D-A12E-05 fa526dc0-333d-41bf-8992-584391be1f84 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18N-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11D-A12E-05 fa526dc0-333d-41bf-8992-584391be1f84 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18N-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11R-A12C-13 79dc3671-d333-4444-ac69-d17c613fde71 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11R-A12C-13 79dc3671-d333-4444-ac69-d17c613fde71 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18N-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11R-A12C-13 79dc3671-d333-4444-ac69-d17c613fde71 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18N-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11R-A12D-07 a8884443-832f-45bb-96a0-dead699cc7e3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11R-A12D-07 a8884443-832f-45bb-96a0-dead699cc7e3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012918_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11R-A12D-07 a8884443-832f-45bb-96a0-dead699cc7e3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012918_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11R-A12D-07 a8884443-832f-45bb-96a0-dead699cc7e3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012918_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11R-A12D-07 a8884443-832f-45bb-96a0-dead699cc7e3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_381154.TCGA-BH-A18N-01A-11R-A12D-07.110714_UNC13-SN749_0082_AD0DGMABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11R-A12D-07 a8884443-832f-45bb-96a0-dead699cc7e3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_381173.TCGA-BH-A18N-01A-11R-A12D-07.110714_UNC13-SN749_0082_AD0DGMABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11R-A12D-07 a8884443-832f-45bb-96a0-dead699cc7e3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_381220.TCGA-BH-A18N-01A-11R-A12D-07.110714_UNC13-SN749_0082_AD0DGMABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18N TCGA-BH-A18N-01A TCGA-BH-A18N-01A-11W-A12S-09 6f63c481-ff10-40ee-8678-9bd04011316b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43D-A129-02 8dece215-c488-4e55-8deb-720306f96bf3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43D-A12A-01 94903a3a-a70e-4f90-ad80-9b2c32926982 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43D-A12A-01 94903a3a-a70e-4f90-ad80-9b2c32926982 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H07_741398.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43D-A12A-01 94903a3a-a70e-4f90-ad80-9b2c32926982 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H07_741398.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43D-A12A-01 94903a3a-a70e-4f90-ad80-9b2c32926982 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H07_741398.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43D-A12A-01 94903a3a-a70e-4f90-ad80-9b2c32926982 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H07_741398.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43D-A12A-01 94903a3a-a70e-4f90-ad80-9b2c32926982 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H07_741398.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43D-A12A-01 94903a3a-a70e-4f90-ad80-9b2c32926982 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H07_741398.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43D-A12A-01 94903a3a-a70e-4f90-ad80-9b2c32926982 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H07_741398.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43D-A12A-01 94903a3a-a70e-4f90-ad80-9b2c32926982 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H07_741398.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43D-A12B-09 a8974cdc-5625-4575-80de-2fcd0671a693 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43D-A12B-09 a8974cdc-5625-4575-80de-2fcd0671a693 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43D-A12E-05 96d15384-c6d4-47b5-b6e0-692048db0e1b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43D-A12E-05 96d15384-c6d4-47b5-b6e0-692048db0e1b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18N-11A-43D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43D-A12E-05 96d15384-c6d4-47b5-b6e0-692048db0e1b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18N-11A-43D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43D-A12E-05 96d15384-c6d4-47b5-b6e0-692048db0e1b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18N-11A-43D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43R-A12C-13 c6431dbc-2ab1-4255-88c2-e98ad614dece Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43R-A12C-13 c6431dbc-2ab1-4255-88c2-e98ad614dece miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18N-11A-43R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43R-A12C-13 c6431dbc-2ab1-4255-88c2-e98ad614dece miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18N-11A-43R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43R-A12D-07 d40f0f2c-4acf-4ea6-b344-1eca23f50fa6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43R-A12D-07 d40f0f2c-4acf-4ea6-b344-1eca23f50fa6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012870_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43R-A12D-07 d40f0f2c-4acf-4ea6-b344-1eca23f50fa6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012870_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43R-A12D-07 d40f0f2c-4acf-4ea6-b344-1eca23f50fa6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012870_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43R-A12D-07 d40f0f2c-4acf-4ea6-b344-1eca23f50fa6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_705928.TCGA-BH-A18N-11A-43R-A12D-07.110628_UNC10-SN254_0239_BD0CTRABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43R-A12D-07 d40f0f2c-4acf-4ea6-b344-1eca23f50fa6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_706242.TCGA-BH-A18N-11A-43R-A12D-07.110628_UNC10-SN254_0239_BD0CTRABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43R-A12D-07 d40f0f2c-4acf-4ea6-b344-1eca23f50fa6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_706294.TCGA-BH-A18N-11A-43R-A12D-07.110628_UNC10-SN254_0239_BD0CTRABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18N TCGA-BH-A18N-11A TCGA-BH-A18N-11A-43W-A12S-09 da8135ab-1c8d-405e-ac0f-f8b59ab1a169 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11D-A129-02 0ab42c3e-27ae-4645-897f-7cd7a217aecf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11D-A12A-01 f73ccb89-b952-40ab-ad9f-f817102cd1ca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11D-A12A-01 f73ccb89-b952-40ab-ad9f-f817102cd1ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F01_741460.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11D-A12A-01 f73ccb89-b952-40ab-ad9f-f817102cd1ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F01_741460.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11D-A12A-01 f73ccb89-b952-40ab-ad9f-f817102cd1ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F01_741460.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11D-A12A-01 f73ccb89-b952-40ab-ad9f-f817102cd1ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F01_741460.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11D-A12A-01 f73ccb89-b952-40ab-ad9f-f817102cd1ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F01_741460.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11D-A12A-01 f73ccb89-b952-40ab-ad9f-f817102cd1ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F01_741460.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11D-A12A-01 f73ccb89-b952-40ab-ad9f-f817102cd1ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F01_741460.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11D-A12A-01 f73ccb89-b952-40ab-ad9f-f817102cd1ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F01_741460.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11D-A12B-09 add624a3-57e9-46be-9bcc-3e53d7c2dfb7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11D-A12B-09 add624a3-57e9-46be-9bcc-3e53d7c2dfb7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11D-A12E-05 db0050ec-b922-4941-9d5d-8b980dc90d16 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11D-A12E-05 db0050ec-b922-4941-9d5d-8b980dc90d16 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18P-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11D-A12E-05 db0050ec-b922-4941-9d5d-8b980dc90d16 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18P-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11D-A12E-05 db0050ec-b922-4941-9d5d-8b980dc90d16 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18P-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11R-A12C-13 df0109d7-65fe-4d47-8709-6a8547657d17 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11R-A12C-13 df0109d7-65fe-4d47-8709-6a8547657d17 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18P-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11R-A12C-13 df0109d7-65fe-4d47-8709-6a8547657d17 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18P-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11R-A12D-07 3b48796b-8591-4d7a-a502-5c4293647156 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11R-A12D-07 3b48796b-8591-4d7a-a502-5c4293647156 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012921_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11R-A12D-07 3b48796b-8591-4d7a-a502-5c4293647156 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012921_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11R-A12D-07 3b48796b-8591-4d7a-a502-5c4293647156 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012921_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11R-A12D-07 3b48796b-8591-4d7a-a502-5c4293647156 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_381261.TCGA-BH-A18P-01A-11R-A12D-07.110714_UNC13-SN749_0082_AD0DGMABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11R-A12D-07 3b48796b-8591-4d7a-a502-5c4293647156 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_381299.TCGA-BH-A18P-01A-11R-A12D-07.110714_UNC13-SN749_0082_AD0DGMABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11R-A12D-07 3b48796b-8591-4d7a-a502-5c4293647156 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_381316.TCGA-BH-A18P-01A-11R-A12D-07.110714_UNC13-SN749_0082_AD0DGMABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18P TCGA-BH-A18P-01A TCGA-BH-A18P-01A-11W-A12S-09 38e83be8-df10-447f-ae93-3c037908b4db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18P TCGA-BH-A18P-11A TCGA-BH-A18P-11A-43D-A129-02 09b55f7a-bc07-491d-883b-4e4b6deb9ceb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18P TCGA-BH-A18P-11A TCGA-BH-A18P-11A-43D-A12A-01 1d22bd94-cdd0-4bae-9355-ec767ba467cd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18P TCGA-BH-A18P-11A TCGA-BH-A18P-11A-43D-A12B-09 5cae8dca-b28a-4483-9c03-6f0645161c04 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18P TCGA-BH-A18P-11A TCGA-BH-A18P-11A-43D-A12B-09 5cae8dca-b28a-4483-9c03-6f0645161c04 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18P TCGA-BH-A18P-11A TCGA-BH-A18P-11A-43D-A12E-05 222306d5-6767-49a7-b6be-5e38d7c5bd79 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18P TCGA-BH-A18P-11A TCGA-BH-A18P-11A-43D-A12E-05 222306d5-6767-49a7-b6be-5e38d7c5bd79 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18P-11A-43D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18P TCGA-BH-A18P-11A TCGA-BH-A18P-11A-43D-A12E-05 222306d5-6767-49a7-b6be-5e38d7c5bd79 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18P-11A-43D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18P TCGA-BH-A18P-11A TCGA-BH-A18P-11A-43D-A12E-05 222306d5-6767-49a7-b6be-5e38d7c5bd79 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18P-11A-43D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18P TCGA-BH-A18P-11A TCGA-BH-A18P-11A-43R-A12C-13 a828ca37-4417-45ec-9624-7815aa23beca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18P TCGA-BH-A18P-11A TCGA-BH-A18P-11A-43R-A12C-13 a828ca37-4417-45ec-9624-7815aa23beca miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18P-11A-43R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18P TCGA-BH-A18P-11A TCGA-BH-A18P-11A-43R-A12C-13 a828ca37-4417-45ec-9624-7815aa23beca miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18P-11A-43R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18P TCGA-BH-A18P-11A TCGA-BH-A18P-11A-43R-A12D-07 08236177-a046-4cfe-a11c-a24292a1f777 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18P TCGA-BH-A18P-11A TCGA-BH-A18P-11A-43R-A12D-07 08236177-a046-4cfe-a11c-a24292a1f777 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012878_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A18P TCGA-BH-A18P-11A TCGA-BH-A18P-11A-43R-A12D-07 08236177-a046-4cfe-a11c-a24292a1f777 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012878_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A18P TCGA-BH-A18P-11A TCGA-BH-A18P-11A-43R-A12D-07 08236177-a046-4cfe-a11c-a24292a1f777 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012878_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A18P TCGA-BH-A18P-11A TCGA-BH-A18P-11A-43R-A12D-07 08236177-a046-4cfe-a11c-a24292a1f777 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441162.TCGA-BH-A18P-11A-43R-A12D-07.110629_UNC15-SN850_0090_AC03J3ABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18P TCGA-BH-A18P-11A TCGA-BH-A18P-11A-43R-A12D-07 08236177-a046-4cfe-a11c-a24292a1f777 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441213.TCGA-BH-A18P-11A-43R-A12D-07.110629_UNC15-SN850_0090_AC03J3ABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18P TCGA-BH-A18P-11A TCGA-BH-A18P-11A-43R-A12D-07 08236177-a046-4cfe-a11c-a24292a1f777 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441233.TCGA-BH-A18P-11A-43R-A12D-07.110629_UNC15-SN850_0090_AC03J3ABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18P TCGA-BH-A18P-11A TCGA-BH-A18P-11A-43W-A12S-09 196c6ee2-765c-467c-a9b5-0db29341ba22 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12D-A129-02 c879e616-de74-4623-98ee-bb338160fa59 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12D-A12A-01 94a07da0-f029-444a-86d7-d9bc24e7e76d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12D-A12A-01 94a07da0-f029-444a-86d7-d9bc24e7e76d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F06_741464.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12D-A12A-01 94a07da0-f029-444a-86d7-d9bc24e7e76d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F06_741464.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12D-A12A-01 94a07da0-f029-444a-86d7-d9bc24e7e76d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F06_741464.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12D-A12A-01 94a07da0-f029-444a-86d7-d9bc24e7e76d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F06_741464.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12D-A12A-01 94a07da0-f029-444a-86d7-d9bc24e7e76d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F06_741464.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12D-A12A-01 94a07da0-f029-444a-86d7-d9bc24e7e76d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F06_741464.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12D-A12A-01 94a07da0-f029-444a-86d7-d9bc24e7e76d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F06_741464.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12D-A12A-01 94a07da0-f029-444a-86d7-d9bc24e7e76d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F06_741464.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12D-A12B-09 a4de6680-33c3-4f6f-8696-453470a00bcb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12D-A12B-09 a4de6680-33c3-4f6f-8696-453470a00bcb Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12D-A12E-05 98c5686f-351b-48a0-b4d6-9c34e4cb782c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12D-A12E-05 98c5686f-351b-48a0-b4d6-9c34e4cb782c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18Q-01A-12D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12D-A12E-05 98c5686f-351b-48a0-b4d6-9c34e4cb782c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18Q-01A-12D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12D-A12E-05 98c5686f-351b-48a0-b4d6-9c34e4cb782c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18Q-01A-12D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12R-A12C-13 8c1922ae-3096-425e-a029-b02d59969589 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12R-A12C-13 8c1922ae-3096-425e-a029-b02d59969589 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18Q-01A-12R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12R-A12C-13 8c1922ae-3096-425e-a029-b02d59969589 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18Q-01A-12R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12R-A12D-07 2c75afc3-11b5-444d-b6e0-61d76b299f40 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12R-A12D-07 2c75afc3-11b5-444d-b6e0-61d76b299f40 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012928_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12R-A12D-07 2c75afc3-11b5-444d-b6e0-61d76b299f40 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012928_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12R-A12D-07 2c75afc3-11b5-444d-b6e0-61d76b299f40 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012928_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12R-A12D-07 2c75afc3-11b5-444d-b6e0-61d76b299f40 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_381218.TCGA-BH-A18Q-01A-12R-A12D-07.110714_UNC13-SN749_0082_AD0DGMABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12R-A12D-07 2c75afc3-11b5-444d-b6e0-61d76b299f40 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_381231.TCGA-BH-A18Q-01A-12R-A12D-07.110714_UNC13-SN749_0082_AD0DGMABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12R-A12D-07 2c75afc3-11b5-444d-b6e0-61d76b299f40 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_381262.TCGA-BH-A18Q-01A-12R-A12D-07.110714_UNC13-SN749_0082_AD0DGMABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-01A TCGA-BH-A18Q-01A-12W-A12S-09 f7bd054e-6bec-4484-94b5-f159dedac49f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34D-A129-02 48420ecb-10a9-4f10-bec3-bb3d964bd70c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34D-A12A-01 792716eb-621a-4538-899f-790af9d745a4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34D-A12A-01 792716eb-621a-4538-899f-790af9d745a4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H08_741572.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34D-A12A-01 792716eb-621a-4538-899f-790af9d745a4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H08_741572.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34D-A12A-01 792716eb-621a-4538-899f-790af9d745a4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H08_741572.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34D-A12A-01 792716eb-621a-4538-899f-790af9d745a4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H08_741572.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34D-A12A-01 792716eb-621a-4538-899f-790af9d745a4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H08_741572.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34D-A12A-01 792716eb-621a-4538-899f-790af9d745a4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H08_741572.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34D-A12A-01 792716eb-621a-4538-899f-790af9d745a4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H08_741572.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34D-A12A-01 792716eb-621a-4538-899f-790af9d745a4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H08_741572.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34D-A12B-09 7a579f39-1175-4207-a069-b49b9cd87782 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34D-A12B-09 7a579f39-1175-4207-a069-b49b9cd87782 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34D-A12E-05 74670e45-b278-4628-bfd2-ced573ade5d1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34D-A12E-05 74670e45-b278-4628-bfd2-ced573ade5d1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18Q-11A-34D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34D-A12E-05 74670e45-b278-4628-bfd2-ced573ade5d1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18Q-11A-34D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34D-A12E-05 74670e45-b278-4628-bfd2-ced573ade5d1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18Q-11A-34D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34R-A12C-13 bf3a8227-c972-4e8e-9d1e-d987e6324e65 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34R-A12C-13 bf3a8227-c972-4e8e-9d1e-d987e6324e65 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18Q-11A-34R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34R-A12C-13 bf3a8227-c972-4e8e-9d1e-d987e6324e65 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18Q-11A-34R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34R-A12D-07 120bc298-f016-4c80-aa5f-a9006444942c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34R-A12D-07 120bc298-f016-4c80-aa5f-a9006444942c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012886_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34R-A12D-07 120bc298-f016-4c80-aa5f-a9006444942c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012886_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34R-A12D-07 120bc298-f016-4c80-aa5f-a9006444942c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012886_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34R-A12D-07 120bc298-f016-4c80-aa5f-a9006444942c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439621.TCGA-BH-A18Q-11A-34R-A12D-07.110715_UNC10-SN254_0245_BD0DG6ABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34R-A12D-07 120bc298-f016-4c80-aa5f-a9006444942c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439623.TCGA-BH-A18Q-11A-34R-A12D-07.110715_UNC10-SN254_0245_BD0DG6ABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34R-A12D-07 120bc298-f016-4c80-aa5f-a9006444942c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439702.TCGA-BH-A18Q-11A-34R-A12D-07.110715_UNC10-SN254_0245_BD0DG6ABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18Q TCGA-BH-A18Q-11A TCGA-BH-A18Q-11A-34W-A12S-09 b28e6b5e-ae2f-4065-9ac3-4b14489e9135 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11D-A129-02 d89da7ab-2473-4144-9fa0-9aa35c57f987 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11D-A12A-01 01428281-1653-4839-b5cf-167bc62eb147 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11D-A12A-01 01428281-1653-4839-b5cf-167bc62eb147 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G01_741522.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11D-A12A-01 01428281-1653-4839-b5cf-167bc62eb147 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G01_741522.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11D-A12A-01 01428281-1653-4839-b5cf-167bc62eb147 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G01_741522.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11D-A12A-01 01428281-1653-4839-b5cf-167bc62eb147 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G01_741522.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11D-A12A-01 01428281-1653-4839-b5cf-167bc62eb147 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G01_741522.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11D-A12A-01 01428281-1653-4839-b5cf-167bc62eb147 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G01_741522.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11D-A12A-01 01428281-1653-4839-b5cf-167bc62eb147 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G01_741522.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11D-A12A-01 01428281-1653-4839-b5cf-167bc62eb147 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G01_741522.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11D-A12B-09 42facac2-81d9-4a9f-b4f6-1de89a7662fc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11D-A12B-09 42facac2-81d9-4a9f-b4f6-1de89a7662fc Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11D-A12E-05 75fc328a-f5db-4fe4-b46d-36914dd06d40 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11D-A12E-05 75fc328a-f5db-4fe4-b46d-36914dd06d40 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18R-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11D-A12E-05 75fc328a-f5db-4fe4-b46d-36914dd06d40 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18R-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11D-A12E-05 75fc328a-f5db-4fe4-b46d-36914dd06d40 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18R-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11D-A19H-09 9c70688d-6e43-4520-9262-eaae4e4d597d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11R-A12C-13 ea911627-20f5-4b26-be8f-e159305eefa6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11R-A12C-13 ea911627-20f5-4b26-be8f-e159305eefa6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18R-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11R-A12C-13 ea911627-20f5-4b26-be8f-e159305eefa6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18R-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11R-A12D-07 b05828bc-eb75-4220-9972-6c6d62fa5303 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11R-A12D-07 b05828bc-eb75-4220-9972-6c6d62fa5303 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012866_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11R-A12D-07 b05828bc-eb75-4220-9972-6c6d62fa5303 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012866_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11R-A12D-07 b05828bc-eb75-4220-9972-6c6d62fa5303 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012866_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11R-A12D-07 b05828bc-eb75-4220-9972-6c6d62fa5303 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441151.TCGA-BH-A18R-01A-11R-A12D-07.110629_UNC15-SN850_0090_AC03J3ABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11R-A12D-07 b05828bc-eb75-4220-9972-6c6d62fa5303 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441197.TCGA-BH-A18R-01A-11R-A12D-07.110629_UNC15-SN850_0090_AC03J3ABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11R-A12D-07 b05828bc-eb75-4220-9972-6c6d62fa5303 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441262.TCGA-BH-A18R-01A-11R-A12D-07.110629_UNC15-SN850_0090_AC03J3ABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18R TCGA-BH-A18R-01A TCGA-BH-A18R-01A-11W-A12S-09 53ec23e0-2520-43fa-96a2-f2ce677c72df Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42D-A129-02 39645f06-7a8f-49a4-8aca-7748ed9fd7cc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42D-A12A-01 4d244828-ee75-461e-948a-4bf7b836d0ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42D-A12A-01 4d244828-ee75-461e-948a-4bf7b836d0ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G03_741556.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42D-A12A-01 4d244828-ee75-461e-948a-4bf7b836d0ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G03_741556.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42D-A12A-01 4d244828-ee75-461e-948a-4bf7b836d0ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G03_741556.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42D-A12A-01 4d244828-ee75-461e-948a-4bf7b836d0ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G03_741556.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42D-A12A-01 4d244828-ee75-461e-948a-4bf7b836d0ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G03_741556.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42D-A12A-01 4d244828-ee75-461e-948a-4bf7b836d0ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G03_741556.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42D-A12A-01 4d244828-ee75-461e-948a-4bf7b836d0ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G03_741556.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42D-A12A-01 4d244828-ee75-461e-948a-4bf7b836d0ec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G03_741556.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42D-A12B-09 fd500edc-7b86-44fc-91b1-9d87683a3e79 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42D-A12B-09 fd500edc-7b86-44fc-91b1-9d87683a3e79 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42D-A12E-05 f77da750-0edc-4a15-9d10-1f4d2c2cd1e0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42D-A12E-05 f77da750-0edc-4a15-9d10-1f4d2c2cd1e0 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18R-11A-42D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42D-A12E-05 f77da750-0edc-4a15-9d10-1f4d2c2cd1e0 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18R-11A-42D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42D-A12E-05 f77da750-0edc-4a15-9d10-1f4d2c2cd1e0 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18R-11A-42D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42D-A19H-09 2dc03379-af51-45de-8ee1-78687da05313 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42R-A12C-13 dd7945f8-3fb1-43ac-a5d9-6a949fc3df22 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42R-A12C-13 dd7945f8-3fb1-43ac-a5d9-6a949fc3df22 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18R-11A-42R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42R-A12C-13 dd7945f8-3fb1-43ac-a5d9-6a949fc3df22 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18R-11A-42R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42R-A12D-07 5462aaff-d060-4ba7-9ab5-0e6977accb91 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42R-A12D-07 5462aaff-d060-4ba7-9ab5-0e6977accb91 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012895_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42R-A12D-07 5462aaff-d060-4ba7-9ab5-0e6977accb91 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012895_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42R-A12D-07 5462aaff-d060-4ba7-9ab5-0e6977accb91 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012895_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42R-A12D-07 5462aaff-d060-4ba7-9ab5-0e6977accb91 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439609.TCGA-BH-A18R-11A-42R-A12D-07.110715_UNC10-SN254_0245_BD0DG6ABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42R-A12D-07 5462aaff-d060-4ba7-9ab5-0e6977accb91 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439673.TCGA-BH-A18R-11A-42R-A12D-07.110715_UNC10-SN254_0245_BD0DG6ABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42R-A12D-07 5462aaff-d060-4ba7-9ab5-0e6977accb91 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439906.TCGA-BH-A18R-11A-42R-A12D-07.110715_UNC10-SN254_0245_BD0DG6ABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18R TCGA-BH-A18R-11A TCGA-BH-A18R-11A-42W-A12S-09 9ab47806-8b05-4d08-bb64-18a61b1bd198 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11D-A129-02 93ad5ca8-3df0-491a-92b8-14b0d1ffce70 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11D-A12A-01 037b8a48-b345-4971-9226-dc9199a29d82 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11D-A12A-01 037b8a48-b345-4971-9226-dc9199a29d82 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D06_741530.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11D-A12A-01 037b8a48-b345-4971-9226-dc9199a29d82 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D06_741530.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11D-A12A-01 037b8a48-b345-4971-9226-dc9199a29d82 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D06_741530.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11D-A12A-01 037b8a48-b345-4971-9226-dc9199a29d82 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D06_741530.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11D-A12A-01 037b8a48-b345-4971-9226-dc9199a29d82 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D06_741530.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11D-A12A-01 037b8a48-b345-4971-9226-dc9199a29d82 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D06_741530.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11D-A12A-01 037b8a48-b345-4971-9226-dc9199a29d82 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D06_741530.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11D-A12A-01 037b8a48-b345-4971-9226-dc9199a29d82 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D06_741530.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11D-A12B-09 a01c12fc-a33e-4a06-8b69-ebe6d4f59c2b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11D-A12B-09 a01c12fc-a33e-4a06-8b69-ebe6d4f59c2b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11D-A12E-05 c7525dea-35c2-4478-a1f8-eb591163ef63 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11D-A12E-05 c7525dea-35c2-4478-a1f8-eb591163ef63 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18S-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11D-A12E-05 c7525dea-35c2-4478-a1f8-eb591163ef63 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18S-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11D-A12E-05 c7525dea-35c2-4478-a1f8-eb591163ef63 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18S-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11R-A12C-13 001201ec-e31a-4887-b4d7-9b4139b7cdf2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11R-A12C-13 001201ec-e31a-4887-b4d7-9b4139b7cdf2 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18S-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11R-A12C-13 001201ec-e31a-4887-b4d7-9b4139b7cdf2 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18S-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11R-A12D-07 cf00b389-d06b-4dd5-9b18-737b06ab9bed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11R-A12D-07 cf00b389-d06b-4dd5-9b18-737b06ab9bed Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012874_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11R-A12D-07 cf00b389-d06b-4dd5-9b18-737b06ab9bed Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012874_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11R-A12D-07 cf00b389-d06b-4dd5-9b18-737b06ab9bed Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012874_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11R-A12D-07 cf00b389-d06b-4dd5-9b18-737b06ab9bed RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441149.TCGA-BH-A18S-01A-11R-A12D-07.110629_UNC15-SN850_0090_AC03J3ABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11R-A12D-07 cf00b389-d06b-4dd5-9b18-737b06ab9bed RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441235.TCGA-BH-A18S-01A-11R-A12D-07.110629_UNC15-SN850_0090_AC03J3ABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11R-A12D-07 cf00b389-d06b-4dd5-9b18-737b06ab9bed RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441281.TCGA-BH-A18S-01A-11R-A12D-07.110629_UNC15-SN850_0090_AC03J3ABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18S TCGA-BH-A18S-01A TCGA-BH-A18S-01A-11W-A12S-09 1addcb40-3a31-4ae1-bfb8-4962c3dd05bf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43D-A129-02 0353122b-95f3-44a8-b12a-60b4230f005d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43D-A12A-01 79c4631d-c1f5-4591-9941-4e074a5c827a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43D-A12A-01 79c4631d-c1f5-4591-9941-4e074a5c827a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G05_741532.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43D-A12A-01 79c4631d-c1f5-4591-9941-4e074a5c827a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G05_741532.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43D-A12A-01 79c4631d-c1f5-4591-9941-4e074a5c827a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G05_741532.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43D-A12A-01 79c4631d-c1f5-4591-9941-4e074a5c827a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G05_741532.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43D-A12A-01 79c4631d-c1f5-4591-9941-4e074a5c827a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G05_741532.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43D-A12A-01 79c4631d-c1f5-4591-9941-4e074a5c827a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G05_741532.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43D-A12A-01 79c4631d-c1f5-4591-9941-4e074a5c827a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G05_741532.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43D-A12A-01 79c4631d-c1f5-4591-9941-4e074a5c827a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G05_741532.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43D-A12B-09 cee84481-1eca-4469-b2be-77830f5a9510 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43D-A12B-09 cee84481-1eca-4469-b2be-77830f5a9510 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43D-A12E-05 ed8e61fe-2d54-4c90-abfa-8ff2c6107307 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43D-A12E-05 ed8e61fe-2d54-4c90-abfa-8ff2c6107307 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18S-11A-43D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43D-A12E-05 ed8e61fe-2d54-4c90-abfa-8ff2c6107307 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18S-11A-43D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43D-A12E-05 ed8e61fe-2d54-4c90-abfa-8ff2c6107307 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18S-11A-43D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43R-A12C-13 0466ca22-413f-41c9-92d9-89d984b1416c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43R-A12C-13 0466ca22-413f-41c9-92d9-89d984b1416c miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18S-11A-43R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43R-A12C-13 0466ca22-413f-41c9-92d9-89d984b1416c miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18S-11A-43R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43R-A12D-07 fa7bcdff-10e1-44f1-86ed-90fab26bc61f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43R-A12D-07 fa7bcdff-10e1-44f1-86ed-90fab26bc61f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012913_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43R-A12D-07 fa7bcdff-10e1-44f1-86ed-90fab26bc61f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012913_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43R-A12D-07 fa7bcdff-10e1-44f1-86ed-90fab26bc61f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012913_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43R-A12D-07 fa7bcdff-10e1-44f1-86ed-90fab26bc61f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_385446.TCGA-BH-A18S-11A-43R-A12D-07.110711_UNC10-SN254_0242_AD0DK5ABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43R-A12D-07 fa7bcdff-10e1-44f1-86ed-90fab26bc61f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_385503.TCGA-BH-A18S-11A-43R-A12D-07.110711_UNC10-SN254_0242_AD0DK5ABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43R-A12D-07 fa7bcdff-10e1-44f1-86ed-90fab26bc61f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_385549.TCGA-BH-A18S-11A-43R-A12D-07.110711_UNC10-SN254_0242_AD0DK5ABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18S TCGA-BH-A18S-11A TCGA-BH-A18S-11A-43W-A12S-09 3822ec9d-fc35-4e8f-95df-a99db0bc43fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11D-A129-02 bea067e1-5b93-483b-b744-6e0432d15935 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11D-A12A-01 2e404295-1b50-43a0-b4cc-5d7712e4d3f5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11D-A12A-01 2e404295-1b50-43a0-b4cc-5d7712e4d3f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D05_741552.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11D-A12A-01 2e404295-1b50-43a0-b4cc-5d7712e4d3f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D05_741552.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11D-A12A-01 2e404295-1b50-43a0-b4cc-5d7712e4d3f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D05_741552.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11D-A12A-01 2e404295-1b50-43a0-b4cc-5d7712e4d3f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D05_741552.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11D-A12A-01 2e404295-1b50-43a0-b4cc-5d7712e4d3f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D05_741552.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11D-A12A-01 2e404295-1b50-43a0-b4cc-5d7712e4d3f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D05_741552.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11D-A12A-01 2e404295-1b50-43a0-b4cc-5d7712e4d3f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D05_741552.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11D-A12A-01 2e404295-1b50-43a0-b4cc-5d7712e4d3f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D05_741552.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11D-A12B-09 4e0ddfcb-e847-4132-bdce-aaee2e027b28 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11D-A12B-09 4e0ddfcb-e847-4132-bdce-aaee2e027b28 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11D-A12E-05 d9afc11b-b0ec-4421-ad0e-7942f56f9724 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11D-A12E-05 d9afc11b-b0ec-4421-ad0e-7942f56f9724 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18T-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11D-A12E-05 d9afc11b-b0ec-4421-ad0e-7942f56f9724 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18T-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11D-A12E-05 d9afc11b-b0ec-4421-ad0e-7942f56f9724 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18T-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11R-A12C-13 6940e0cd-da91-4a0f-8b20-32b58be79297 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11R-A12C-13 6940e0cd-da91-4a0f-8b20-32b58be79297 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18T-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11R-A12C-13 6940e0cd-da91-4a0f-8b20-32b58be79297 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18T-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11R-A12D-07 733890d7-6557-454e-8697-fe9c619874e3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11R-A12D-07 733890d7-6557-454e-8697-fe9c619874e3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012882_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11R-A12D-07 733890d7-6557-454e-8697-fe9c619874e3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012882_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11R-A12D-07 733890d7-6557-454e-8697-fe9c619874e3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012882_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11R-A12D-07 733890d7-6557-454e-8697-fe9c619874e3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439600.TCGA-BH-A18T-01A-11R-A12D-07.110715_UNC10-SN254_0245_BD0DG6ABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11R-A12D-07 733890d7-6557-454e-8697-fe9c619874e3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439682.TCGA-BH-A18T-01A-11R-A12D-07.110715_UNC10-SN254_0245_BD0DG6ABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11R-A12D-07 733890d7-6557-454e-8697-fe9c619874e3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439709.TCGA-BH-A18T-01A-11R-A12D-07.110715_UNC10-SN254_0245_BD0DG6ABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18T TCGA-BH-A18T-01A TCGA-BH-A18T-01A-11W-A12S-09 0ee12831-c82f-4c8c-b204-7629238cf0ff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18T TCGA-BH-A18T-11A TCGA-BH-A18T-11A-42D-A129-02 a8c86c2f-6e9b-45c4-998d-88e09704f9df Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18T TCGA-BH-A18T-11A TCGA-BH-A18T-11A-42D-A12A-01 5d9aba33-c5ac-443b-aa05-70575e486fb6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18T TCGA-BH-A18T-11A TCGA-BH-A18T-11A-42D-A12A-01 5d9aba33-c5ac-443b-aa05-70575e486fb6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B03_741420.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18T TCGA-BH-A18T-11A TCGA-BH-A18T-11A-42D-A12A-01 5d9aba33-c5ac-443b-aa05-70575e486fb6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B03_741420.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18T TCGA-BH-A18T-11A TCGA-BH-A18T-11A-42D-A12A-01 5d9aba33-c5ac-443b-aa05-70575e486fb6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B03_741420.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18T TCGA-BH-A18T-11A TCGA-BH-A18T-11A-42D-A12A-01 5d9aba33-c5ac-443b-aa05-70575e486fb6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B03_741420.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18T TCGA-BH-A18T-11A TCGA-BH-A18T-11A-42D-A12A-01 5d9aba33-c5ac-443b-aa05-70575e486fb6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B03_741420.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18T TCGA-BH-A18T-11A TCGA-BH-A18T-11A-42D-A12A-01 5d9aba33-c5ac-443b-aa05-70575e486fb6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B03_741420.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18T TCGA-BH-A18T-11A TCGA-BH-A18T-11A-42D-A12A-01 5d9aba33-c5ac-443b-aa05-70575e486fb6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B03_741420.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18T TCGA-BH-A18T-11A TCGA-BH-A18T-11A-42D-A12A-01 5d9aba33-c5ac-443b-aa05-70575e486fb6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B03_741420.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18T TCGA-BH-A18T-11A TCGA-BH-A18T-11A-42D-A12B-09 9cfbb971-1628-4eda-9d96-efa55b7d4138 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18T TCGA-BH-A18T-11A TCGA-BH-A18T-11A-42D-A12B-09 9cfbb971-1628-4eda-9d96-efa55b7d4138 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18T TCGA-BH-A18T-11A TCGA-BH-A18T-11A-42W-A12S-09 dc112191-54ca-45cf-9293-7612e9eed567 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21D-A129-02 2a02b246-ad80-4ad2-8980-80873208057a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21D-A12A-01 cf285aaa-51f0-4eba-a92a-ae9ca8fd2198 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21D-A12A-01 cf285aaa-51f0-4eba-a92a-ae9ca8fd2198 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B04_741496.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21D-A12A-01 cf285aaa-51f0-4eba-a92a-ae9ca8fd2198 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B04_741496.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21D-A12A-01 cf285aaa-51f0-4eba-a92a-ae9ca8fd2198 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B04_741496.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21D-A12A-01 cf285aaa-51f0-4eba-a92a-ae9ca8fd2198 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B04_741496.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21D-A12A-01 cf285aaa-51f0-4eba-a92a-ae9ca8fd2198 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B04_741496.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21D-A12A-01 cf285aaa-51f0-4eba-a92a-ae9ca8fd2198 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B04_741496.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21D-A12A-01 cf285aaa-51f0-4eba-a92a-ae9ca8fd2198 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B04_741496.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21D-A12A-01 cf285aaa-51f0-4eba-a92a-ae9ca8fd2198 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B04_741496.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21D-A12B-09 a8400863-c145-4c6c-bcf3-e4cc4d816d22 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21D-A12B-09 a8400863-c145-4c6c-bcf3-e4cc4d816d22 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21D-A12E-05 3673c00b-88a3-41fb-b466-93434c7f8f9c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21D-A12E-05 3673c00b-88a3-41fb-b466-93434c7f8f9c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18U-01A-21D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21D-A12E-05 3673c00b-88a3-41fb-b466-93434c7f8f9c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18U-01A-21D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21D-A12E-05 3673c00b-88a3-41fb-b466-93434c7f8f9c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18U-01A-21D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21D-A19H-09 fb9135d9-2acf-41dd-8552-359e6b8c9470 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21R-A12C-13 7c4b4291-227c-445d-9403-ca6006fc29cc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21R-A12C-13 7c4b4291-227c-445d-9403-ca6006fc29cc miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18U-01A-21R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21R-A12C-13 7c4b4291-227c-445d-9403-ca6006fc29cc miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18U-01A-21R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21R-A12D-07 f6e76192-c4ed-485f-bb51-1b752bd7f544 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21R-A12D-07 f6e76192-c4ed-485f-bb51-1b752bd7f544 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012891_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21R-A12D-07 f6e76192-c4ed-485f-bb51-1b752bd7f544 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012891_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21R-A12D-07 f6e76192-c4ed-485f-bb51-1b752bd7f544 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012891_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21R-A12D-07 f6e76192-c4ed-485f-bb51-1b752bd7f544 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439586.TCGA-BH-A18U-01A-21R-A12D-07.110715_UNC10-SN254_0245_BD0DG6ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21R-A12D-07 f6e76192-c4ed-485f-bb51-1b752bd7f544 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439611.TCGA-BH-A18U-01A-21R-A12D-07.110715_UNC10-SN254_0245_BD0DG6ABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21R-A12D-07 f6e76192-c4ed-485f-bb51-1b752bd7f544 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439680.TCGA-BH-A18U-01A-21R-A12D-07.110715_UNC10-SN254_0245_BD0DG6ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18U TCGA-BH-A18U-01A TCGA-BH-A18U-01A-21W-A12S-09 6af12f19-da64-4fab-bac6-c99cddb9d691 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23D-A129-02 fd6c1b99-5184-488a-867a-2397be5d0ca9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23D-A12A-01 147ea216-05b9-41bb-9bf0-4ebe38d36183 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23D-A12A-01 147ea216-05b9-41bb-9bf0-4ebe38d36183 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G06_741568.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23D-A12A-01 147ea216-05b9-41bb-9bf0-4ebe38d36183 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G06_741568.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23D-A12A-01 147ea216-05b9-41bb-9bf0-4ebe38d36183 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G06_741568.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23D-A12A-01 147ea216-05b9-41bb-9bf0-4ebe38d36183 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G06_741568.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23D-A12A-01 147ea216-05b9-41bb-9bf0-4ebe38d36183 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G06_741568.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23D-A12A-01 147ea216-05b9-41bb-9bf0-4ebe38d36183 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G06_741568.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23D-A12A-01 147ea216-05b9-41bb-9bf0-4ebe38d36183 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G06_741568.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23D-A12A-01 147ea216-05b9-41bb-9bf0-4ebe38d36183 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G06_741568.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23D-A12B-09 f0d1235d-8fc6-4849-8506-9d8dce2eabaa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23D-A12B-09 f0d1235d-8fc6-4849-8506-9d8dce2eabaa Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23D-A12E-05 85211abb-94aa-4acf-9f54-5e8094670084 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23D-A12E-05 85211abb-94aa-4acf-9f54-5e8094670084 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18U-11A-23D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23D-A12E-05 85211abb-94aa-4acf-9f54-5e8094670084 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18U-11A-23D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23D-A12E-05 85211abb-94aa-4acf-9f54-5e8094670084 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18U-11A-23D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23D-A19H-09 cc233ed9-c88f-4845-a458-8bffc7eaf403 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23R-A12C-13 fbe5b774-500b-4ac0-b983-f2055ddbb6b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23R-A12C-13 fbe5b774-500b-4ac0-b983-f2055ddbb6b0 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18U-11A-23R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23R-A12C-13 fbe5b774-500b-4ac0-b983-f2055ddbb6b0 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A18U-11A-23R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23R-A12D-07 02222fea-f3da-4328-8188-8ef24d1f55e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23R-A12D-07 02222fea-f3da-4328-8188-8ef24d1f55e4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013012_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23R-A12D-07 02222fea-f3da-4328-8188-8ef24d1f55e4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013012_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23R-A12D-07 02222fea-f3da-4328-8188-8ef24d1f55e4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013012_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23R-A12D-07 02222fea-f3da-4328-8188-8ef24d1f55e4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_381214.TCGA-BH-A18U-11A-23R-A12D-07.110714_UNC13-SN749_0082_AD0DGMABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23R-A12D-07 02222fea-f3da-4328-8188-8ef24d1f55e4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_381226.TCGA-BH-A18U-11A-23R-A12D-07.110714_UNC13-SN749_0082_AD0DGMABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23R-A12D-07 02222fea-f3da-4328-8188-8ef24d1f55e4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_381245.TCGA-BH-A18U-11A-23R-A12D-07.110714_UNC13-SN749_0082_AD0DGMABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18U TCGA-BH-A18U-11A TCGA-BH-A18U-11A-23W-A12S-09 f77f51e2-d920-49ce-9e42-ec163f7a4003 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18V TCGA-BH-A18V-01A TCGA-BH-A18V-01A-11D-A129-02 05b44680-17fb-43c1-b773-20d7f1b5d0ff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18V TCGA-BH-A18V-01A TCGA-BH-A18V-01A-11D-A12A-01 12aa84c3-f49b-408a-a863-97f2254e442e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18V TCGA-BH-A18V-01A TCGA-BH-A18V-01A-11D-A12A-01 12aa84c3-f49b-408a-a863-97f2254e442e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G08_741502.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18V TCGA-BH-A18V-01A TCGA-BH-A18V-01A-11D-A12A-01 12aa84c3-f49b-408a-a863-97f2254e442e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G08_741502.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18V TCGA-BH-A18V-01A TCGA-BH-A18V-01A-11D-A12A-01 12aa84c3-f49b-408a-a863-97f2254e442e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G08_741502.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18V TCGA-BH-A18V-01A TCGA-BH-A18V-01A-11D-A12A-01 12aa84c3-f49b-408a-a863-97f2254e442e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G08_741502.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18V TCGA-BH-A18V-01A TCGA-BH-A18V-01A-11D-A12A-01 12aa84c3-f49b-408a-a863-97f2254e442e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G08_741502.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18V TCGA-BH-A18V-01A TCGA-BH-A18V-01A-11D-A12A-01 12aa84c3-f49b-408a-a863-97f2254e442e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G08_741502.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18V TCGA-BH-A18V-01A TCGA-BH-A18V-01A-11D-A12A-01 12aa84c3-f49b-408a-a863-97f2254e442e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G08_741502.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18V TCGA-BH-A18V-01A TCGA-BH-A18V-01A-11D-A12A-01 12aa84c3-f49b-408a-a863-97f2254e442e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G08_741502.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18V TCGA-BH-A18V-01A TCGA-BH-A18V-01A-11D-A12B-09 6150dd25-a8f4-4d9f-9da0-f956855ab67d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18V TCGA-BH-A18V-01A TCGA-BH-A18V-01A-11D-A12B-09 6150dd25-a8f4-4d9f-9da0-f956855ab67d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18V TCGA-BH-A18V-01A TCGA-BH-A18V-01A-11D-A12E-05 d08b5b79-e49c-4959-a076-a2d8eb7fa648 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18V TCGA-BH-A18V-01A TCGA-BH-A18V-01A-11D-A12E-05 d08b5b79-e49c-4959-a076-a2d8eb7fa648 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-BH-A18V-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-BH-A18V TCGA-BH-A18V-01A TCGA-BH-A18V-01A-11D-A12E-05 d08b5b79-e49c-4959-a076-a2d8eb7fa648 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-BH-A18V-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-BH-A18V TCGA-BH-A18V-01A TCGA-BH-A18V-01A-11D-A12E-05 d08b5b79-e49c-4959-a076-a2d8eb7fa648 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18V-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18V TCGA-BH-A18V-01A TCGA-BH-A18V-01A-11R-A12C-13 169e70fd-3b37-47a2-af43-11760594c469 Complete Clinical Set bio 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1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18V TCGA-BH-A18V-06A TCGA-BH-A18V-06A-11D-A212-05 3725b25a-a5f0-42b4-b4d7-a5176093e12c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18V TCGA-BH-A18V-06A TCGA-BH-A18V-06A-11R-A213-07 ded1efed-b3b9-4d1a-b4c9-b595543fc461 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18V TCGA-BH-A18V-06A TCGA-BH-A18V-06A-11R-A214-13 32fc0d46-1d59-48c1-b1ce-6ba3e5ae5f43 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18V TCGA-BH-A18V-11A TCGA-BH-A18V-11A-52D-A129-02 15e40f52-c605-4bca-a96d-cfee5aa4247c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18V TCGA-BH-A18V-11A TCGA-BH-A18V-11A-52D-A12A-01 654350b9-c310-46be-9d78-d709f32c208c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18V TCGA-BH-A18V-11A TCGA-BH-A18V-11A-52D-A12A-01 654350b9-c310-46be-9d78-d709f32c208c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G10_741566.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-BH-A18V TCGA-BH-A18V-11A TCGA-BH-A18V-11A-52D-A12A-01 654350b9-c310-46be-9d78-d709f32c208c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G10_741566.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18V TCGA-BH-A18V-11A TCGA-BH-A18V-11A-52D-A12A-01 654350b9-c310-46be-9d78-d709f32c208c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G10_741566.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18V TCGA-BH-A18V-11A TCGA-BH-A18V-11A-52D-A12A-01 654350b9-c310-46be-9d78-d709f32c208c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G10_741566.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18V TCGA-BH-A18V-11A TCGA-BH-A18V-11A-52D-A12A-01 654350b9-c310-46be-9d78-d709f32c208c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G10_741566.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18V TCGA-BH-A18V-11A TCGA-BH-A18V-11A-52D-A12A-01 654350b9-c310-46be-9d78-d709f32c208c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G10_741566.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18V TCGA-BH-A18V-11A TCGA-BH-A18V-11A-52D-A12A-01 654350b9-c310-46be-9d78-d709f32c208c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G10_741566.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-BH-A18V TCGA-BH-A18V-11A TCGA-BH-A18V-11A-52D-A12A-01 654350b9-c310-46be-9d78-d709f32c208c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G10_741566.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-BH-A18V TCGA-BH-A18V-11A TCGA-BH-A18V-11A-52D-A12B-09 e968461c-7bb9-4db0-87c6-5e7c77c5042c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18V TCGA-BH-A18V-11A TCGA-BH-A18V-11A-52D-A12B-09 e968461c-7bb9-4db0-87c6-5e7c77c5042c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A18V TCGA-BH-A18V-11A TCGA-BH-A18V-11A-52D-A12E-05 0d4fd0f7-eeb6-4e97-957f-2715af51acc9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18V TCGA-BH-A18V-11A TCGA-BH-A18V-11A-52D-A12E-05 0d4fd0f7-eeb6-4e97-957f-2715af51acc9 DNA Methylation HumanMethylation27 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-BH-A18V-11A-52D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-BH-A18V TCGA-BH-A18V-11A TCGA-BH-A18V-11A-52R-A12C-13 fd3ff6f5-fec6-4fc0-9849-a9d0ac46f80e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18V TCGA-BH-A18V-11A TCGA-BH-A18V-11A-52R-A12D-07 288c81eb-4c43-406b-a5e5-fee452a95afb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A18V TCGA-BH-A18V-11A TCGA-BH-A18V-11A-52R-A12D-07 288c81eb-4c43-406b-a5e5-fee452a95afb Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012926_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A18V TCGA-BH-A18V-11A TCGA-BH-A18V-11A-52R-A12D-07 288c81eb-4c43-406b-a5e5-fee452a95afb Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012926_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A18V TCGA-BH-A18V-11A TCGA-BH-A18V-11A-52R-A12D-07 288c81eb-4c43-406b-a5e5-fee452a95afb Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012926_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A18V TCGA-BH-A18V-11A TCGA-BH-A18V-11A-52R-A12D-07 288c81eb-4c43-406b-a5e5-fee452a95afb RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_381230.TCGA-BH-A18V-11A-52R-A12D-07.110714_UNC13-SN749_0082_AD0DGMABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18V TCGA-BH-A18V-11A TCGA-BH-A18V-11A-52R-A12D-07 288c81eb-4c43-406b-a5e5-fee452a95afb RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_381234.TCGA-BH-A18V-11A-52R-A12D-07.110714_UNC13-SN749_0082_AD0DGMABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18V TCGA-BH-A18V-11A TCGA-BH-A18V-11A-52R-A12D-07 288c81eb-4c43-406b-a5e5-fee452a95afb RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_381313.TCGA-BH-A18V-11A-52R-A12D-07.110714_UNC13-SN749_0082_AD0DGMABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A18V TCGA-BH-A18V-11A TCGA-BH-A18V-11A-52W-A12S-09 e181e091-6030-4692-80b3-b25c5106778f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-BH-A18V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-BH-A1EN TCGA-BH-A1EN-01A TCGA-BH-A1EN-01A-11D-A13I-02 256726e4-dff2-41eb-99fe-6adcb860a5be Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1EN TCGA-BH-A1EN-01A TCGA-BH-A1EN-01A-11D-A13J-01 d47439d3-9c7a-4dea-838d-e9955842055b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1EN TCGA-BH-A1EN-01A TCGA-BH-A1EN-01A-11D-A13J-01 d47439d3-9c7a-4dea-838d-e9955842055b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A05_771960.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-BH-A1EN TCGA-BH-A1EN-01A TCGA-BH-A1EN-01A-11D-A13J-01 d47439d3-9c7a-4dea-838d-e9955842055b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A05_771960.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1EN TCGA-BH-A1EN-01A TCGA-BH-A1EN-01A-11D-A13J-01 d47439d3-9c7a-4dea-838d-e9955842055b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A05_771960.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1EN TCGA-BH-A1EN-01A TCGA-BH-A1EN-01A-11D-A13J-01 d47439d3-9c7a-4dea-838d-e9955842055b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A05_771960.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1EN TCGA-BH-A1EN-01A TCGA-BH-A1EN-01A-11D-A13J-01 d47439d3-9c7a-4dea-838d-e9955842055b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A05_771960.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1EN TCGA-BH-A1EN-01A TCGA-BH-A1EN-01A-11D-A13J-01 d47439d3-9c7a-4dea-838d-e9955842055b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A05_771960.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1EN TCGA-BH-A1EN-01A TCGA-BH-A1EN-01A-11D-A13J-01 d47439d3-9c7a-4dea-838d-e9955842055b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A05_771960.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1EN TCGA-BH-A1EN-01A TCGA-BH-A1EN-01A-11D-A13J-01 d47439d3-9c7a-4dea-838d-e9955842055b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A05_771960.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-BH-A1EN TCGA-BH-A1EN-01A TCGA-BH-A1EN-01A-11D-A13K-05 20578452-82d1-4702-84ca-e260a0c24630 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1EN TCGA-BH-A1EN-01A TCGA-BH-A1EN-01A-11D-A13K-05 20578452-82d1-4702-84ca-e260a0c24630 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818108_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1EN TCGA-BH-A1EN-01A TCGA-BH-A1EN-01A-11D-A13K-05 20578452-82d1-4702-84ca-e260a0c24630 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818108_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1EN TCGA-BH-A1EN-01A TCGA-BH-A1EN-01A-11D-A13K-05 20578452-82d1-4702-84ca-e260a0c24630 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-BH-A1EN-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-BH-A1EN TCGA-BH-A1EN-01A TCGA-BH-A1EN-01A-11D-A13K-05 20578452-82d1-4702-84ca-e260a0c24630 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-BH-A1EN-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-BH-A1EN TCGA-BH-A1EN-01A TCGA-BH-A1EN-01A-11D-A13L-09 bba839a3-798d-4c68-8290-09c2c52ead9f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1EN TCGA-BH-A1EN-01A TCGA-BH-A1EN-01A-11D-A17G-09 ca100ef0-be45-415f-909d-7172261d0084 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1EN TCGA-BH-A1EN-01A TCGA-BH-A1EN-01A-11R-A13P-13 ca858d99-e1e6-4f06-9897-81d8d5c66db7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1EN TCGA-BH-A1EN-01A TCGA-BH-A1EN-01A-11R-A13P-13 ca858d99-e1e6-4f06-9897-81d8d5c66db7 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1EN-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1EN TCGA-BH-A1EN-01A TCGA-BH-A1EN-01A-11R-A13P-13 ca858d99-e1e6-4f06-9897-81d8d5c66db7 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1EN-01A-11R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1EN TCGA-BH-A1EN-01A TCGA-BH-A1EN-01A-11R-A13Q-07 a6db80e4-b161-412d-932a-fe2898a1722f Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_454386.TCGA-BH-A1EN-01A-11R-A13Q-07.110805_UNC11-SN627_0134_AC042TABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1EN TCGA-BH-A1EN-01A TCGA-BH-A1EN-01A-11R-A13Q-07 a6db80e4-b161-412d-932a-fe2898a1722f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_454401.TCGA-BH-A1EN-01A-11R-A13Q-07.110805_UNC11-SN627_0134_AC042TABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1EN TCGA-BH-A1EN-01A TCGA-BH-A1EN-01A-11W-A14Q-09 052be341-c1bc-4927-944f-78f7f468a0cf Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-01A TCGA-BH-A1EO-01A-11D-A134-01 7bed3841-5a16-43fc-8b2b-4e0aa0b89f1e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D06_755948.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-BH-A1EO TCGA-BH-A1EO-01A TCGA-BH-A1EO-01A-11D-A134-01 7bed3841-5a16-43fc-8b2b-4e0aa0b89f1e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D06_755948.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EO TCGA-BH-A1EO-01A TCGA-BH-A1EO-01A-11D-A134-01 7bed3841-5a16-43fc-8b2b-4e0aa0b89f1e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D06_755948.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EO TCGA-BH-A1EO-01A TCGA-BH-A1EO-01A-11D-A134-01 7bed3841-5a16-43fc-8b2b-4e0aa0b89f1e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D06_755948.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EO TCGA-BH-A1EO-01A TCGA-BH-A1EO-01A-11D-A134-01 7bed3841-5a16-43fc-8b2b-4e0aa0b89f1e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D06_755948.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EO TCGA-BH-A1EO-01A TCGA-BH-A1EO-01A-11D-A134-01 7bed3841-5a16-43fc-8b2b-4e0aa0b89f1e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D06_755948.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EO TCGA-BH-A1EO-01A TCGA-BH-A1EO-01A-11D-A134-01 7bed3841-5a16-43fc-8b2b-4e0aa0b89f1e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D06_755948.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EO TCGA-BH-A1EO-01A TCGA-BH-A1EO-01A-11D-A134-01 7bed3841-5a16-43fc-8b2b-4e0aa0b89f1e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D06_755948.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-01A TCGA-BH-A1EO-01A-11D-A135-09 20131381-8a11-425d-8954-980e6ec7c427 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-01A TCGA-BH-A1EO-01A-11D-A135-09 20131381-8a11-425d-8954-980e6ec7c427 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-01A TCGA-BH-A1EO-01A-11D-A138-05 074fafd7-3926-4222-9140-c8ab0b673444 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-01A TCGA-BH-A1EO-01A-11D-A138-05 074fafd7-3926-4222-9140-c8ab0b673444 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324048_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-01A TCGA-BH-A1EO-01A-11D-A138-05 074fafd7-3926-4222-9140-c8ab0b673444 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324048_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-01A TCGA-BH-A1EO-01A-11D-A138-05 074fafd7-3926-4222-9140-c8ab0b673444 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-2.TCGA-BH-A1EO-01A-11D-A138-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0 103 07-NOV-11 05.19.10.670000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-01A TCGA-BH-A1EO-01A-11D-A138-05 074fafd7-3926-4222-9140-c8ab0b673444 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-3.TCGA-BH-A1EO-01A-11D-A138-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0 103 07-NOV-11 05.59.32.897000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-01A TCGA-BH-A1EO-01A-11R-A136-13 7bc12487-a385-4513-a196-45e7efed8c4b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-01A TCGA-BH-A1EO-01A-11R-A136-13 7bc12487-a385-4513-a196-45e7efed8c4b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1EO-01A-11R-A136-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-01A TCGA-BH-A1EO-01A-11R-A136-13 7bc12487-a385-4513-a196-45e7efed8c4b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1EO-01A-11R-A136-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-01A TCGA-BH-A1EO-01A-11R-A137-07 e6f1450a-6731-4593-82c3-28f839ebf148 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-01A TCGA-BH-A1EO-01A-11R-A137-07 e6f1450a-6731-4593-82c3-28f839ebf148 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013098_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 103 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-01A TCGA-BH-A1EO-01A-11R-A137-07 e6f1450a-6731-4593-82c3-28f839ebf148 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013098_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 103 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-01A TCGA-BH-A1EO-01A-11R-A137-07 e6f1450a-6731-4593-82c3-28f839ebf148 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013098_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 103 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-01A TCGA-BH-A1EO-01A-11R-A137-07 e6f1450a-6731-4593-82c3-28f839ebf148 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_705828.TCGA-BH-A1EO-01A-11R-A137-07.110725_UNC15-SN850_0099_AD0DETABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-01A TCGA-BH-A1EO-01A-11R-A137-07 e6f1450a-6731-4593-82c3-28f839ebf148 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_705829.TCGA-BH-A1EO-01A-11R-A137-07.110725_UNC15-SN850_0099_AD0DETABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-01A TCGA-BH-A1EO-01A-11R-A137-07 e6f1450a-6731-4593-82c3-28f839ebf148 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_705858.TCGA-BH-A1EO-01A-11R-A137-07.110725_UNC15-SN850_0099_AD0DETABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-01A TCGA-BH-A1EO-01A-11W-A14P-09 3ca3f77e-73ee-440f-af6a-082cd676aeb8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31D-A133-02 13ed4fef-b881-4b2b-baf5-0ce5eb7df06b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31D-A134-01 5e78e332-044f-4c33-8b3d-93ea1ab474f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31D-A134-01 5e78e332-044f-4c33-8b3d-93ea1ab474f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D07_755944.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31D-A134-01 5e78e332-044f-4c33-8b3d-93ea1ab474f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D07_755944.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31D-A134-01 5e78e332-044f-4c33-8b3d-93ea1ab474f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D07_755944.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31D-A134-01 5e78e332-044f-4c33-8b3d-93ea1ab474f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D07_755944.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31D-A134-01 5e78e332-044f-4c33-8b3d-93ea1ab474f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D07_755944.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31D-A134-01 5e78e332-044f-4c33-8b3d-93ea1ab474f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D07_755944.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31D-A134-01 5e78e332-044f-4c33-8b3d-93ea1ab474f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D07_755944.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31D-A134-01 5e78e332-044f-4c33-8b3d-93ea1ab474f9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D07_755944.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31D-A135-09 cb2284f3-6d08-40ec-bf36-dfa349354c59 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31D-A135-09 cb2284f3-6d08-40ec-bf36-dfa349354c59 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31D-A138-05 4ebac4a8-35d0-40cd-aae9-d76ab97db3b7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31D-A138-05 4ebac4a8-35d0-40cd-aae9-d76ab97db3b7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324048_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31D-A138-05 4ebac4a8-35d0-40cd-aae9-d76ab97db3b7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324048_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31D-A138-05 4ebac4a8-35d0-40cd-aae9-d76ab97db3b7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-2.TCGA-BH-A1EO-11A-31D-A138-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0 103 07-NOV-11 05.19.10.670000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31D-A138-05 4ebac4a8-35d0-40cd-aae9-d76ab97db3b7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-3.TCGA-BH-A1EO-11A-31D-A138-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0 103 07-NOV-11 05.59.32.897000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31R-A136-13 441d2c96-cfd8-4b72-9be7-731521311366 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31R-A136-13 441d2c96-cfd8-4b72-9be7-731521311366 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1EO-11A-31R-A136-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31R-A136-13 441d2c96-cfd8-4b72-9be7-731521311366 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1EO-11A-31R-A136-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31R-A137-07 71cc9cf0-2992-4ac6-8642-6fdb66958fca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31R-A137-07 71cc9cf0-2992-4ac6-8642-6fdb66958fca Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013097_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 103 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31R-A137-07 71cc9cf0-2992-4ac6-8642-6fdb66958fca Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013097_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 103 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31R-A137-07 71cc9cf0-2992-4ac6-8642-6fdb66958fca Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013097_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 103 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31R-A137-07 71cc9cf0-2992-4ac6-8642-6fdb66958fca RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_626254.TCGA-BH-A1EO-11A-31R-A137-07.110725_UNC15-SN850_0099_AD0DETABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31R-A137-07 71cc9cf0-2992-4ac6-8642-6fdb66958fca RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_626258.TCGA-BH-A1EO-11A-31R-A137-07.110725_UNC15-SN850_0099_AD0DETABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31R-A137-07 71cc9cf0-2992-4ac6-8642-6fdb66958fca RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_626276.TCGA-BH-A1EO-11A-31R-A137-07.110725_UNC15-SN850_0099_AD0DETABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1EO TCGA-BH-A1EO-11A TCGA-BH-A1EO-11A-31W-A14P-09 6ec5c7dd-9340-44f6-acca-5ddd49575466 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-01A TCGA-BH-A1ES-01A-11D-A133-02 89c18543-13d9-421b-8e64-0e577922f0b4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1ES.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-01A TCGA-BH-A1ES-01A-11D-A134-01 c222b951-0d4d-42e1-8cf2-7011b4ba3b7d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1ES.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-01A TCGA-BH-A1ES-01A-11D-A134-01 c222b951-0d4d-42e1-8cf2-7011b4ba3b7d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B08_755844.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-BH-A1ES TCGA-BH-A1ES-01A TCGA-BH-A1ES-01A-11D-A134-01 c222b951-0d4d-42e1-8cf2-7011b4ba3b7d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B08_755844.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1ES TCGA-BH-A1ES-01A TCGA-BH-A1ES-01A-11D-A134-01 c222b951-0d4d-42e1-8cf2-7011b4ba3b7d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B08_755844.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1ES TCGA-BH-A1ES-01A TCGA-BH-A1ES-01A-11D-A134-01 c222b951-0d4d-42e1-8cf2-7011b4ba3b7d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B08_755844.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1ES TCGA-BH-A1ES-01A TCGA-BH-A1ES-01A-11D-A134-01 c222b951-0d4d-42e1-8cf2-7011b4ba3b7d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B08_755844.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1ES TCGA-BH-A1ES-01A TCGA-BH-A1ES-01A-11D-A134-01 c222b951-0d4d-42e1-8cf2-7011b4ba3b7d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B08_755844.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1ES TCGA-BH-A1ES-01A TCGA-BH-A1ES-01A-11D-A134-01 c222b951-0d4d-42e1-8cf2-7011b4ba3b7d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B08_755844.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1ES TCGA-BH-A1ES-01A TCGA-BH-A1ES-01A-11D-A134-01 c222b951-0d4d-42e1-8cf2-7011b4ba3b7d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B08_755844.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-01A TCGA-BH-A1ES-01A-11D-A135-09 7ecda44b-e942-4077-9d18-2a844ec53c9d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1ES.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-01A TCGA-BH-A1ES-01A-11D-A135-09 7ecda44b-e942-4077-9d18-2a844ec53c9d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-01A TCGA-BH-A1ES-01A-11D-A138-05 4d2864e2-0177-4867-8a6e-25224c12abb6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1ES.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-01A TCGA-BH-A1ES-01A-11D-A138-05 4d2864e2-0177-4867-8a6e-25224c12abb6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324048_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-01A TCGA-BH-A1ES-01A-11D-A138-05 4d2864e2-0177-4867-8a6e-25224c12abb6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324048_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-01A TCGA-BH-A1ES-01A-11D-A138-05 4d2864e2-0177-4867-8a6e-25224c12abb6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-2.TCGA-BH-A1ES-01A-11D-A138-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0 103 07-NOV-11 05.19.10.670000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-01A TCGA-BH-A1ES-01A-11D-A138-05 4d2864e2-0177-4867-8a6e-25224c12abb6 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-3.TCGA-BH-A1ES-01A-11D-A138-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0 103 07-NOV-11 05.59.32.897000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-01A TCGA-BH-A1ES-01A-11R-A136-13 7262dc82-6d72-4428-9ef5-e1baad0f0f0a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1ES.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-01A TCGA-BH-A1ES-01A-11R-A136-13 7262dc82-6d72-4428-9ef5-e1baad0f0f0a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1ES-01A-11R-A136-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-01A TCGA-BH-A1ES-01A-11R-A136-13 7262dc82-6d72-4428-9ef5-e1baad0f0f0a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1ES-01A-11R-A136-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-01A TCGA-BH-A1ES-01A-11R-A137-07 cbb45082-6d4e-4457-b023-52f9372ae053 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1ES.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-01A TCGA-BH-A1ES-01A-11R-A137-07 cbb45082-6d4e-4457-b023-52f9372ae053 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013071_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 103 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-01A TCGA-BH-A1ES-01A-11R-A137-07 cbb45082-6d4e-4457-b023-52f9372ae053 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013071_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 103 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-01A TCGA-BH-A1ES-01A-11R-A137-07 cbb45082-6d4e-4457-b023-52f9372ae053 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013071_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 103 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-01A TCGA-BH-A1ES-01A-11W-A14P-09 ee164162-ec4c-4eab-9057-7df2cc7e1a75 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1ES.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-11A TCGA-BH-A1ES-11A-33D-A133-02 78cf20c9-6b9f-4979-9a6f-9c608b197674 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1ES.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-11A TCGA-BH-A1ES-11A-33D-A134-01 b8fb76ab-2799-41e5-a454-ef82f761a010 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1ES.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-11A TCGA-BH-A1ES-11A-33D-A134-01 b8fb76ab-2799-41e5-a454-ef82f761a010 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H09_755866.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-BH-A1ES TCGA-BH-A1ES-11A TCGA-BH-A1ES-11A-33D-A134-01 b8fb76ab-2799-41e5-a454-ef82f761a010 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H09_755866.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1ES TCGA-BH-A1ES-11A TCGA-BH-A1ES-11A-33D-A134-01 b8fb76ab-2799-41e5-a454-ef82f761a010 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H09_755866.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1ES TCGA-BH-A1ES-11A TCGA-BH-A1ES-11A-33D-A134-01 b8fb76ab-2799-41e5-a454-ef82f761a010 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H09_755866.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1ES TCGA-BH-A1ES-11A TCGA-BH-A1ES-11A-33D-A134-01 b8fb76ab-2799-41e5-a454-ef82f761a010 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H09_755866.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1ES TCGA-BH-A1ES-11A TCGA-BH-A1ES-11A-33D-A134-01 b8fb76ab-2799-41e5-a454-ef82f761a010 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H09_755866.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1ES TCGA-BH-A1ES-11A TCGA-BH-A1ES-11A-33D-A134-01 b8fb76ab-2799-41e5-a454-ef82f761a010 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H09_755866.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1ES TCGA-BH-A1ES-11A TCGA-BH-A1ES-11A-33D-A134-01 b8fb76ab-2799-41e5-a454-ef82f761a010 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H09_755866.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-11A TCGA-BH-A1ES-11A-33D-A135-09 b281f983-29fc-4389-bea2-cabf4c90b3df Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1ES.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-11A TCGA-BH-A1ES-11A-33D-A135-09 b281f983-29fc-4389-bea2-cabf4c90b3df Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-11A TCGA-BH-A1ES-11A-33D-A138-05 3051e54f-164b-4b01-9a33-004022480d88 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1ES.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-11A TCGA-BH-A1ES-11A-33D-A138-05 3051e54f-164b-4b01-9a33-004022480d88 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324071_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-11A TCGA-BH-A1ES-11A-33D-A138-05 3051e54f-164b-4b01-9a33-004022480d88 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324071_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-11A TCGA-BH-A1ES-11A-33D-A138-05 3051e54f-164b-4b01-9a33-004022480d88 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-2.TCGA-BH-A1ES-11A-33D-A138-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0 103 07-NOV-11 05.19.10.670000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-11A TCGA-BH-A1ES-11A-33D-A138-05 3051e54f-164b-4b01-9a33-004022480d88 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-3.TCGA-BH-A1ES-11A-33D-A138-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0 103 07-NOV-11 05.59.32.897000000 PM TCGA-BH-A1ES TCGA-BH-A1ES-11A TCGA-BH-A1ES-11A-33W-A14P-09 133360ed-a1b7-439d-8568-ceb9ead81d03 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1ES.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11D-A133-02 33b2dc01-2cd1-4e6d-a68f-de3ea978d73b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11D-A134-01 ff6c8bdf-a663-45fe-b48f-dcca255eb1d1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11D-A134-01 ff6c8bdf-a663-45fe-b48f-dcca255eb1d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H10_755888.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11D-A134-01 ff6c8bdf-a663-45fe-b48f-dcca255eb1d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H10_755888.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11D-A134-01 ff6c8bdf-a663-45fe-b48f-dcca255eb1d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H10_755888.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11D-A134-01 ff6c8bdf-a663-45fe-b48f-dcca255eb1d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H10_755888.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11D-A134-01 ff6c8bdf-a663-45fe-b48f-dcca255eb1d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H10_755888.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11D-A134-01 ff6c8bdf-a663-45fe-b48f-dcca255eb1d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H10_755888.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11D-A134-01 ff6c8bdf-a663-45fe-b48f-dcca255eb1d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H10_755888.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11D-A134-01 ff6c8bdf-a663-45fe-b48f-dcca255eb1d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H10_755888.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11D-A135-09 9bd66613-68ad-42c1-ab43-dac1386027f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11D-A135-09 9bd66613-68ad-42c1-ab43-dac1386027f9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11D-A138-05 1b033766-4fbf-43ba-9ea0-0e2cd69e756c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11D-A138-05 1b033766-4fbf-43ba-9ea0-0e2cd69e756c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324071_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11D-A138-05 1b033766-4fbf-43ba-9ea0-0e2cd69e756c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324071_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11D-A138-05 1b033766-4fbf-43ba-9ea0-0e2cd69e756c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-2.TCGA-BH-A1ET-01A-11D-A138-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0 103 07-NOV-11 05.19.10.670000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11D-A138-05 1b033766-4fbf-43ba-9ea0-0e2cd69e756c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-3.TCGA-BH-A1ET-01A-11D-A138-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0 103 07-NOV-11 05.59.32.897000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11R-A136-13 f1456b7b-281e-4083-9214-7041a36a8c8d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11R-A136-13 f1456b7b-281e-4083-9214-7041a36a8c8d miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1ET-01A-11R-A136-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11R-A136-13 f1456b7b-281e-4083-9214-7041a36a8c8d miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1ET-01A-11R-A136-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11R-A137-07 b0388c2e-0793-4084-bcc3-454c2ec88931 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11R-A137-07 b0388c2e-0793-4084-bcc3-454c2ec88931 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013088_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 103 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11R-A137-07 b0388c2e-0793-4084-bcc3-454c2ec88931 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013088_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 103 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11R-A137-07 b0388c2e-0793-4084-bcc3-454c2ec88931 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013088_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 103 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11R-A137-07 b0388c2e-0793-4084-bcc3-454c2ec88931 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_483973.TCGA-BH-A1ET-01A-11R-A137-07.110725_UNC15-SN850_0100_BD0DRKABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11R-A137-07 b0388c2e-0793-4084-bcc3-454c2ec88931 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_484058.TCGA-BH-A1ET-01A-11R-A137-07.110725_UNC15-SN850_0100_BD0DRKABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11R-A137-07 b0388c2e-0793-4084-bcc3-454c2ec88931 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_484060.TCGA-BH-A1ET-01A-11R-A137-07.110725_UNC15-SN850_0100_BD0DRKABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-01A TCGA-BH-A1ET-01A-11W-A14P-09 697fec8d-bdb8-4a1e-bb28-957813c756a4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23D-A133-02 1165bd68-02f5-4aa0-991e-e360d31458c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23D-A134-01 3d9c05e8-e272-4ded-9b7f-9bc8c8fff4a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23D-A134-01 3d9c05e8-e272-4ded-9b7f-9bc8c8fff4a6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G07_755864.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23D-A134-01 3d9c05e8-e272-4ded-9b7f-9bc8c8fff4a6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G07_755864.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23D-A134-01 3d9c05e8-e272-4ded-9b7f-9bc8c8fff4a6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G07_755864.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23D-A134-01 3d9c05e8-e272-4ded-9b7f-9bc8c8fff4a6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G07_755864.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23D-A134-01 3d9c05e8-e272-4ded-9b7f-9bc8c8fff4a6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G07_755864.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23D-A134-01 3d9c05e8-e272-4ded-9b7f-9bc8c8fff4a6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G07_755864.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23D-A134-01 3d9c05e8-e272-4ded-9b7f-9bc8c8fff4a6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G07_755864.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23D-A134-01 3d9c05e8-e272-4ded-9b7f-9bc8c8fff4a6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G07_755864.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23D-A135-09 55ca01bf-18c0-48b3-b83f-4e13b5161bde Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23D-A135-09 55ca01bf-18c0-48b3-b83f-4e13b5161bde Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23D-A138-05 0b3ed36a-a816-44fe-a264-78bad6560d0c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23D-A138-05 0b3ed36a-a816-44fe-a264-78bad6560d0c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324071_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23D-A138-05 0b3ed36a-a816-44fe-a264-78bad6560d0c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324071_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23D-A138-05 0b3ed36a-a816-44fe-a264-78bad6560d0c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-2.TCGA-BH-A1ET-11B-23D-A138-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0 103 07-NOV-11 05.19.10.670000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23D-A138-05 0b3ed36a-a816-44fe-a264-78bad6560d0c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-3.TCGA-BH-A1ET-11B-23D-A138-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0 103 07-NOV-11 05.59.32.897000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23R-A136-13 9b8d390b-b865-44e6-a25c-8efe952935eb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23R-A136-13 9b8d390b-b865-44e6-a25c-8efe952935eb miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1ET-11B-23R-A136-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23R-A136-13 9b8d390b-b865-44e6-a25c-8efe952935eb miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1ET-11B-23R-A136-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23R-A137-07 ef7f2a68-bbfc-4458-9c3e-18c5d81ef7be Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23R-A137-07 ef7f2a68-bbfc-4458-9c3e-18c5d81ef7be Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013093_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 103 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23R-A137-07 ef7f2a68-bbfc-4458-9c3e-18c5d81ef7be Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013093_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 103 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23R-A137-07 ef7f2a68-bbfc-4458-9c3e-18c5d81ef7be Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013093_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 103 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23R-A137-07 ef7f2a68-bbfc-4458-9c3e-18c5d81ef7be RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_483980.TCGA-BH-A1ET-11B-23R-A137-07.110725_UNC15-SN850_0100_BD0DRKABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23R-A137-07 ef7f2a68-bbfc-4458-9c3e-18c5d81ef7be RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_484054.TCGA-BH-A1ET-11B-23R-A137-07.110725_UNC15-SN850_0100_BD0DRKABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23R-A137-07 ef7f2a68-bbfc-4458-9c3e-18c5d81ef7be RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_484055.TCGA-BH-A1ET-11B-23R-A137-07.110725_UNC15-SN850_0100_BD0DRKABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1ET TCGA-BH-A1ET-11B TCGA-BH-A1ET-11B-23W-A14P-09 f324efb1-52a1-4cc6-bbcd-aaa6ea1225f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1ET.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11D-A133-02 9278c272-ed28-4c5e-8e0d-72280df91b44 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11D-A134-01 784df7f1-e71f-4daa-bfda-0b1b1a69e0b6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11D-A134-01 784df7f1-e71f-4daa-bfda-0b1b1a69e0b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H11_755804.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11D-A134-01 784df7f1-e71f-4daa-bfda-0b1b1a69e0b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H11_755804.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11D-A134-01 784df7f1-e71f-4daa-bfda-0b1b1a69e0b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H11_755804.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11D-A134-01 784df7f1-e71f-4daa-bfda-0b1b1a69e0b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H11_755804.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11D-A134-01 784df7f1-e71f-4daa-bfda-0b1b1a69e0b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H11_755804.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11D-A134-01 784df7f1-e71f-4daa-bfda-0b1b1a69e0b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H11_755804.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11D-A134-01 784df7f1-e71f-4daa-bfda-0b1b1a69e0b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H11_755804.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11D-A134-01 784df7f1-e71f-4daa-bfda-0b1b1a69e0b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H11_755804.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11D-A135-09 dc578e75-e63c-4bdf-abfa-e2d063c9cd6d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11D-A135-09 dc578e75-e63c-4bdf-abfa-e2d063c9cd6d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11D-A138-05 46dc3ac1-4c62-493f-8d16-b97b1996eebe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11D-A138-05 46dc3ac1-4c62-493f-8d16-b97b1996eebe DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324071_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11D-A138-05 46dc3ac1-4c62-493f-8d16-b97b1996eebe DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324071_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11D-A138-05 46dc3ac1-4c62-493f-8d16-b97b1996eebe DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-2.TCGA-BH-A1EU-01A-11D-A138-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0 103 07-NOV-11 05.19.10.670000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11D-A138-05 46dc3ac1-4c62-493f-8d16-b97b1996eebe DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-3.TCGA-BH-A1EU-01A-11D-A138-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0 103 07-NOV-11 05.59.32.897000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11R-A136-13 842b4975-478f-4f4d-b0b9-829e9dd23617 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11R-A136-13 842b4975-478f-4f4d-b0b9-829e9dd23617 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1EU-01A-11R-A136-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11R-A136-13 842b4975-478f-4f4d-b0b9-829e9dd23617 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1EU-01A-11R-A136-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11R-A137-07 bfeed1cc-e0f8-493f-a950-829ecb3acccc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11R-A137-07 bfeed1cc-e0f8-493f-a950-829ecb3acccc Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013074_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 103 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11R-A137-07 bfeed1cc-e0f8-493f-a950-829ecb3acccc Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013074_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 103 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11R-A137-07 bfeed1cc-e0f8-493f-a950-829ecb3acccc Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013074_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 103 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11R-A137-07 bfeed1cc-e0f8-493f-a950-829ecb3acccc RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_484022.TCGA-BH-A1EU-01A-11R-A137-07.110725_UNC15-SN850_0100_BD0DRKABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11R-A137-07 bfeed1cc-e0f8-493f-a950-829ecb3acccc RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_484057.TCGA-BH-A1EU-01A-11R-A137-07.110725_UNC15-SN850_0100_BD0DRKABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11R-A137-07 bfeed1cc-e0f8-493f-a950-829ecb3acccc RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_484068.TCGA-BH-A1EU-01A-11R-A137-07.110725_UNC15-SN850_0100_BD0DRKABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-01A TCGA-BH-A1EU-01A-11W-A14P-09 1b0d4bef-3e8e-43f8-a660-60458404fcea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23D-A133-02 8c091500-4714-4f26-ac85-c5c3a48f1c40 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23D-A134-01 543af091-6f6c-4275-a881-c70cb440b339 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23D-A134-01 543af091-6f6c-4275-a881-c70cb440b339 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D12_755790.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23D-A134-01 543af091-6f6c-4275-a881-c70cb440b339 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D12_755790.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23D-A134-01 543af091-6f6c-4275-a881-c70cb440b339 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D12_755790.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23D-A134-01 543af091-6f6c-4275-a881-c70cb440b339 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D12_755790.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23D-A134-01 543af091-6f6c-4275-a881-c70cb440b339 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D12_755790.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23D-A134-01 543af091-6f6c-4275-a881-c70cb440b339 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D12_755790.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23D-A134-01 543af091-6f6c-4275-a881-c70cb440b339 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D12_755790.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23D-A134-01 543af091-6f6c-4275-a881-c70cb440b339 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D12_755790.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23D-A135-09 ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23D-A135-09 ee19abe7-fde7-4c3f-812d-2b9b8a9c4a45 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23D-A138-05 6c77e6d7-aa30-40b0-9378-19d2a3ec1def Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23D-A138-05 6c77e6d7-aa30-40b0-9378-19d2a3ec1def DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324071_R05C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23D-A138-05 6c77e6d7-aa30-40b0-9378-19d2a3ec1def DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324071_R05C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23D-A138-05 6c77e6d7-aa30-40b0-9378-19d2a3ec1def DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-2.TCGA-BH-A1EU-11A-23D-A138-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0 103 07-NOV-11 05.19.10.670000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23D-A138-05 6c77e6d7-aa30-40b0-9378-19d2a3ec1def DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-3.TCGA-BH-A1EU-11A-23D-A138-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0 103 07-NOV-11 05.59.32.897000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23R-A136-13 959ef129-1199-4e17-b358-69529b26325c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23R-A136-13 959ef129-1199-4e17-b358-69529b26325c miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1EU-11A-23R-A136-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23R-A136-13 959ef129-1199-4e17-b358-69529b26325c miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1EU-11A-23R-A136-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23R-A137-07 9e12314d-d1f0-44be-93f7-e50a56f86b46 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23R-A137-07 9e12314d-d1f0-44be-93f7-e50a56f86b46 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013090_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 103 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23R-A137-07 9e12314d-d1f0-44be-93f7-e50a56f86b46 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013090_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 103 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23R-A137-07 9e12314d-d1f0-44be-93f7-e50a56f86b46 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013090_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 103 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23R-A137-07 9e12314d-d1f0-44be-93f7-e50a56f86b46 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_845957.TCGA-BH-A1EU-11A-23R-A137-07.110725_UNC15-SN850_0100_BD0DRKABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23R-A137-07 9e12314d-d1f0-44be-93f7-e50a56f86b46 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_845978.TCGA-BH-A1EU-11A-23R-A137-07.110725_UNC15-SN850_0100_BD0DRKABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23R-A137-07 9e12314d-d1f0-44be-93f7-e50a56f86b46 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_846003.TCGA-BH-A1EU-11A-23R-A137-07.110725_UNC15-SN850_0100_BD0DRKABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1EU TCGA-BH-A1EU-11A TCGA-BH-A1EU-11A-23W-A14P-09 b4de7784-f410-4058-a122-430e754eceb8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11D-A133-02 8b780c30-2dbb-469b-8718-a91a03a35cc9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11D-A134-01 76537c73-9c3f-44db-bc92-10957f72d425 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11D-A134-01 76537c73-9c3f-44db-bc92-10957f72d425 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D02_755896.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11D-A134-01 76537c73-9c3f-44db-bc92-10957f72d425 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D02_755896.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11D-A134-01 76537c73-9c3f-44db-bc92-10957f72d425 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D02_755896.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11D-A134-01 76537c73-9c3f-44db-bc92-10957f72d425 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D02_755896.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11D-A134-01 76537c73-9c3f-44db-bc92-10957f72d425 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D02_755896.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11D-A134-01 76537c73-9c3f-44db-bc92-10957f72d425 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D02_755896.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11D-A134-01 76537c73-9c3f-44db-bc92-10957f72d425 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D02_755896.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11D-A134-01 76537c73-9c3f-44db-bc92-10957f72d425 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D02_755896.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11D-A135-09 43fbe2a9-078a-4be2-b67c-b855329091f0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11D-A135-09 43fbe2a9-078a-4be2-b67c-b855329091f0 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11D-A138-05 f0bd9260-0253-42c0-ab21-c034a63b580f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11D-A138-05 f0bd9260-0253-42c0-ab21-c034a63b580f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042316106_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11D-A138-05 f0bd9260-0253-42c0-ab21-c034a63b580f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042316106_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11D-A138-05 f0bd9260-0253-42c0-ab21-c034a63b580f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-2.TCGA-BH-A1EV-01A-11D-A138-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0 103 07-NOV-11 05.19.10.670000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11D-A138-05 f0bd9260-0253-42c0-ab21-c034a63b580f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-3.TCGA-BH-A1EV-01A-11D-A138-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0 103 07-NOV-11 05.59.32.897000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11R-A136-13 f8595ffc-9e0c-4314-b743-ad166b6593b8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11R-A136-13 f8595ffc-9e0c-4314-b743-ad166b6593b8 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1EV-01A-11R-A136-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11R-A136-13 f8595ffc-9e0c-4314-b743-ad166b6593b8 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1EV-01A-11R-A136-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11R-A137-07 4dac7a33-db46-4815-8c6c-fb326959c741 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11R-A137-07 4dac7a33-db46-4815-8c6c-fb326959c741 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013092_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 103 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11R-A137-07 4dac7a33-db46-4815-8c6c-fb326959c741 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013092_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 103 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11R-A137-07 4dac7a33-db46-4815-8c6c-fb326959c741 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013092_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 103 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11R-A137-07 4dac7a33-db46-4815-8c6c-fb326959c741 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_483954.TCGA-BH-A1EV-01A-11R-A137-07.110725_UNC15-SN850_0100_BD0DRKABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11R-A137-07 4dac7a33-db46-4815-8c6c-fb326959c741 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_484029.TCGA-BH-A1EV-01A-11R-A137-07.110725_UNC15-SN850_0100_BD0DRKABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11R-A137-07 4dac7a33-db46-4815-8c6c-fb326959c741 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_484072.TCGA-BH-A1EV-01A-11R-A137-07.110725_UNC15-SN850_0100_BD0DRKABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-01A TCGA-BH-A1EV-01A-11W-A14P-09 36ea1c5f-3f65-4e6e-b207-13ef36691349 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-11A TCGA-BH-A1EV-11A-24D-A133-02 6423a8d3-1aad-447d-acc3-e4626965c90b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-11A TCGA-BH-A1EV-11A-24D-A134-01 1919a553-a688-46f8-9435-16a8b256c727 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-11A TCGA-BH-A1EV-11A-24D-A134-01 1919a553-a688-46f8-9435-16a8b256c727 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B03_755950.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-BH-A1EV TCGA-BH-A1EV-11A TCGA-BH-A1EV-11A-24D-A134-01 1919a553-a688-46f8-9435-16a8b256c727 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B03_755950.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EV TCGA-BH-A1EV-11A TCGA-BH-A1EV-11A-24D-A134-01 1919a553-a688-46f8-9435-16a8b256c727 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B03_755950.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EV TCGA-BH-A1EV-11A TCGA-BH-A1EV-11A-24D-A134-01 1919a553-a688-46f8-9435-16a8b256c727 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B03_755950.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EV TCGA-BH-A1EV-11A TCGA-BH-A1EV-11A-24D-A134-01 1919a553-a688-46f8-9435-16a8b256c727 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B03_755950.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EV TCGA-BH-A1EV-11A TCGA-BH-A1EV-11A-24D-A134-01 1919a553-a688-46f8-9435-16a8b256c727 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B03_755950.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EV TCGA-BH-A1EV-11A TCGA-BH-A1EV-11A-24D-A134-01 1919a553-a688-46f8-9435-16a8b256c727 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B03_755950.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EV TCGA-BH-A1EV-11A TCGA-BH-A1EV-11A-24D-A134-01 1919a553-a688-46f8-9435-16a8b256c727 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B03_755950.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-11A TCGA-BH-A1EV-11A-24D-A135-09 5a28c2e5-4aec-49d5-beaa-3546005f5ba5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-11A TCGA-BH-A1EV-11A-24D-A135-09 5a28c2e5-4aec-49d5-beaa-3546005f5ba5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-11A TCGA-BH-A1EV-11A-24D-A138-05 bcd79f79-c942-47b2-b560-f4410fad563f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-11A TCGA-BH-A1EV-11A-24D-A138-05 bcd79f79-c942-47b2-b560-f4410fad563f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324048_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-11A TCGA-BH-A1EV-11A-24D-A138-05 bcd79f79-c942-47b2-b560-f4410fad563f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324048_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-11A TCGA-BH-A1EV-11A-24D-A138-05 bcd79f79-c942-47b2-b560-f4410fad563f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-2.TCGA-BH-A1EV-11A-24D-A138-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0 103 07-NOV-11 05.19.10.670000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-11A TCGA-BH-A1EV-11A-24D-A138-05 bcd79f79-c942-47b2-b560-f4410fad563f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-3.TCGA-BH-A1EV-11A-24D-A138-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0 103 07-NOV-11 05.59.32.897000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-11A TCGA-BH-A1EV-11A-24R-A136-13 de0de24b-fb45-4c41-ae49-f60ad857f240 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-11A TCGA-BH-A1EV-11A-24R-A136-13 de0de24b-fb45-4c41-ae49-f60ad857f240 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1EV-11A-24R-A136-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-11A TCGA-BH-A1EV-11A-24R-A136-13 de0de24b-fb45-4c41-ae49-f60ad857f240 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1EV-11A-24R-A136-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-11A TCGA-BH-A1EV-11A-24R-A137-07 7b234c36-729b-422d-8e2a-ebd42af74bce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-11A TCGA-BH-A1EV-11A-24R-A137-07 7b234c36-729b-422d-8e2a-ebd42af74bce RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_484047.TCGA-BH-A1EV-11A-24R-A137-07.110725_UNC15-SN850_0100_BD0DRKABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-11A TCGA-BH-A1EV-11A-24R-A137-07 7b234c36-729b-422d-8e2a-ebd42af74bce RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_484053.TCGA-BH-A1EV-11A-24R-A137-07.110725_UNC15-SN850_0100_BD0DRKABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-11A TCGA-BH-A1EV-11A-24R-A137-07 7b234c36-729b-422d-8e2a-ebd42af74bce RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_484066.TCGA-BH-A1EV-11A-24R-A137-07.110725_UNC15-SN850_0100_BD0DRKABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1EV TCGA-BH-A1EV-11A TCGA-BH-A1EV-11A-24W-A14P-09 a0c3c74f-1576-476a-92c7-ecc51689f516 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11D-A133-02 e03e94ed-d27b-4339-bcac-fcbd87907d3c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11D-A134-01 aff7ebf5-e7ff-4932-972f-758e23aedf4b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11D-A134-01 aff7ebf5-e7ff-4932-972f-758e23aedf4b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G02_755812.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11D-A134-01 aff7ebf5-e7ff-4932-972f-758e23aedf4b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G02_755812.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11D-A134-01 aff7ebf5-e7ff-4932-972f-758e23aedf4b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G02_755812.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11D-A134-01 aff7ebf5-e7ff-4932-972f-758e23aedf4b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G02_755812.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11D-A134-01 aff7ebf5-e7ff-4932-972f-758e23aedf4b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G02_755812.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11D-A134-01 aff7ebf5-e7ff-4932-972f-758e23aedf4b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G02_755812.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11D-A134-01 aff7ebf5-e7ff-4932-972f-758e23aedf4b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G02_755812.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11D-A134-01 aff7ebf5-e7ff-4932-972f-758e23aedf4b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G02_755812.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11D-A135-09 c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11D-A135-09 c6f4b1b6-a8dd-4a9a-a500-b14a738fe18f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11D-A138-05 66efb8be-d25a-45db-940a-5922198734d0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11D-A138-05 66efb8be-d25a-45db-940a-5922198734d0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324048_R05C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11D-A138-05 66efb8be-d25a-45db-940a-5922198734d0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324048_R05C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11D-A138-05 66efb8be-d25a-45db-940a-5922198734d0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-2.TCGA-BH-A1EW-01A-11D-A138-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0 103 07-NOV-11 05.19.10.670000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11D-A138-05 66efb8be-d25a-45db-940a-5922198734d0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-3.TCGA-BH-A1EW-01A-11D-A138-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0 103 07-NOV-11 05.59.32.897000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11R-A136-13 f4c01ab0-9c75-47ee-bcc7-6aff53f2d1e0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11R-A136-13 f4c01ab0-9c75-47ee-bcc7-6aff53f2d1e0 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1EW-01A-11R-A136-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11R-A136-13 f4c01ab0-9c75-47ee-bcc7-6aff53f2d1e0 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1EW-01A-11R-A136-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11R-A137-07 59783c67-6446-44c1-b9b3-505470f54c82 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11R-A137-07 59783c67-6446-44c1-b9b3-505470f54c82 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013075_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 103 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11R-A137-07 59783c67-6446-44c1-b9b3-505470f54c82 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013075_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 103 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11R-A137-07 59783c67-6446-44c1-b9b3-505470f54c82 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013075_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 103 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11R-A137-07 59783c67-6446-44c1-b9b3-505470f54c82 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_484039.TCGA-BH-A1EW-01A-11R-A137-07.110725_UNC15-SN850_0100_BD0DRKABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11R-A137-07 59783c67-6446-44c1-b9b3-505470f54c82 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_484041.TCGA-BH-A1EW-01A-11R-A137-07.110725_UNC15-SN850_0100_BD0DRKABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11R-A137-07 59783c67-6446-44c1-b9b3-505470f54c82 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_484059.TCGA-BH-A1EW-01A-11R-A137-07.110725_UNC15-SN850_0100_BD0DRKABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-01A TCGA-BH-A1EW-01A-11W-A14P-09 811a6809-ec55-4f4d-9959-b5f4d68f1241 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33D-A133-02 11ecd65f-a45d-4935-ad0a-11ea29f35f40 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33D-A134-01 80300c22-3f72-4523-ac20-4e145d0d8a63 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33D-A134-01 80300c22-3f72-4523-ac20-4e145d0d8a63 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D04_755936.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33D-A134-01 80300c22-3f72-4523-ac20-4e145d0d8a63 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D04_755936.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33D-A134-01 80300c22-3f72-4523-ac20-4e145d0d8a63 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D04_755936.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33D-A134-01 80300c22-3f72-4523-ac20-4e145d0d8a63 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D04_755936.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33D-A134-01 80300c22-3f72-4523-ac20-4e145d0d8a63 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D04_755936.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33D-A134-01 80300c22-3f72-4523-ac20-4e145d0d8a63 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D04_755936.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33D-A134-01 80300c22-3f72-4523-ac20-4e145d0d8a63 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D04_755936.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33D-A134-01 80300c22-3f72-4523-ac20-4e145d0d8a63 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D04_755936.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33D-A135-09 f82dbed7-9803-4143-8b84-e8beb908c205 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33D-A135-09 f82dbed7-9803-4143-8b84-e8beb908c205 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33D-A138-05 2533e462-e4fe-46d1-b34e-6b3f7ea423db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33D-A138-05 2533e462-e4fe-46d1-b34e-6b3f7ea423db DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324048_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33D-A138-05 2533e462-e4fe-46d1-b34e-6b3f7ea423db DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324048_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33D-A138-05 2533e462-e4fe-46d1-b34e-6b3f7ea423db DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-2.TCGA-BH-A1EW-11B-33D-A138-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0 103 07-NOV-11 05.19.10.670000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33D-A138-05 2533e462-e4fe-46d1-b34e-6b3f7ea423db DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-3.TCGA-BH-A1EW-11B-33D-A138-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0 103 07-NOV-11 05.59.32.897000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33R-A136-13 e783bc46-fb48-4334-b703-00e66633190c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33R-A136-13 e783bc46-fb48-4334-b703-00e66633190c miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1EW-11B-33R-A136-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33R-A136-13 e783bc46-fb48-4334-b703-00e66633190c miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1EW-11B-33R-A136-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33R-A137-07 cf1027dc-9ba9-4e3c-80d9-4bb13021cc31 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33R-A137-07 cf1027dc-9ba9-4e3c-80d9-4bb13021cc31 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013086_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 103 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33R-A137-07 cf1027dc-9ba9-4e3c-80d9-4bb13021cc31 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013086_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 103 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33R-A137-07 cf1027dc-9ba9-4e3c-80d9-4bb13021cc31 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013086_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 103 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33R-A137-07 cf1027dc-9ba9-4e3c-80d9-4bb13021cc31 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_483984.TCGA-BH-A1EW-11B-33R-A137-07.110725_UNC15-SN850_0100_BD0DRKABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33R-A137-07 cf1027dc-9ba9-4e3c-80d9-4bb13021cc31 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_484065.TCGA-BH-A1EW-11B-33R-A137-07.110725_UNC15-SN850_0100_BD0DRKABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33R-A137-07 cf1027dc-9ba9-4e3c-80d9-4bb13021cc31 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_484076.TCGA-BH-A1EW-11B-33R-A137-07.110725_UNC15-SN850_0100_BD0DRKABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1EW TCGA-BH-A1EW-11B TCGA-BH-A1EW-11B-33W-A14P-09 36a4bafb-f1fb-4dae-939b-303db49b7ff1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1EX TCGA-BH-A1EX-01A TCGA-BH-A1EX-01A-11D-A13I-02 fbedf47e-bda6-46d7-b945-ee0bb03fb98e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1EX TCGA-BH-A1EX-01A TCGA-BH-A1EX-01A-11D-A13J-01 936d1d83-4360-4be3-8de2-8ed7414c01dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1EX TCGA-BH-A1EX-01A TCGA-BH-A1EX-01A-11D-A13J-01 936d1d83-4360-4be3-8de2-8ed7414c01dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D12_772008.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-BH-A1EX TCGA-BH-A1EX-01A TCGA-BH-A1EX-01A-11D-A13J-01 936d1d83-4360-4be3-8de2-8ed7414c01dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D12_772008.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1EX TCGA-BH-A1EX-01A TCGA-BH-A1EX-01A-11D-A13J-01 936d1d83-4360-4be3-8de2-8ed7414c01dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D12_772008.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1EX TCGA-BH-A1EX-01A TCGA-BH-A1EX-01A-11D-A13J-01 936d1d83-4360-4be3-8de2-8ed7414c01dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D12_772008.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1EX TCGA-BH-A1EX-01A TCGA-BH-A1EX-01A-11D-A13J-01 936d1d83-4360-4be3-8de2-8ed7414c01dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D12_772008.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1EX TCGA-BH-A1EX-01A TCGA-BH-A1EX-01A-11D-A13J-01 936d1d83-4360-4be3-8de2-8ed7414c01dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D12_772008.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1EX TCGA-BH-A1EX-01A TCGA-BH-A1EX-01A-11D-A13J-01 936d1d83-4360-4be3-8de2-8ed7414c01dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D12_772008.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1EX TCGA-BH-A1EX-01A TCGA-BH-A1EX-01A-11D-A13J-01 936d1d83-4360-4be3-8de2-8ed7414c01dc SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1EX TCGA-BH-A1EX-11A TCGA-BH-A1EX-11A-21D-A13N-01 3ce04ad8-2810-4050-86ad-4625242b5c9e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_G01_771864.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-BH-A1EX TCGA-BH-A1EX-11A TCGA-BH-A1EX-11A-21D-A13N-01 3ce04ad8-2810-4050-86ad-4625242b5c9e SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-BH-A1EY-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-BH-A1EY TCGA-BH-A1EY-01A TCGA-BH-A1EY-01A-11D-A13K-05 70213a27-45eb-473e-b448-bd92fadf7717 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-BH-A1EY-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-BH-A1EY TCGA-BH-A1EY-01A TCGA-BH-A1EY-01A-11D-A13L-09 7c035023-8ea9-4504-8f03-9573745cb6ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1EY TCGA-BH-A1EY-01A TCGA-BH-A1EY-01A-11R-A13P-13 e7a38573-4939-43e3-a9eb-a47e5f6ccb2b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1EY TCGA-BH-A1EY-01A TCGA-BH-A1EY-01A-11R-A13P-13 e7a38573-4939-43e3-a9eb-a47e5f6ccb2b miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F09_771858.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-BH-A1EY TCGA-BH-A1EY-11B TCGA-BH-A1EY-11B-21D-A13O-09 e7b03011-3858-4841-8e3c-2be86e149f5f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1EY TCGA-BH-A1EY-11B TCGA-BH-A1EY-11B-21D-A13T-05 03782716-e528-4835-9328-c698ab94ec4c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1EY TCGA-BH-A1EY-11B TCGA-BH-A1EY-11B-21D-A13T-05 03782716-e528-4835-9328-c698ab94ec4c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818129_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1EY TCGA-BH-A1EY-11B TCGA-BH-A1EY-11B-21D-A13T-05 03782716-e528-4835-9328-c698ab94ec4c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818129_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1EY TCGA-BH-A1EY-11B TCGA-BH-A1EY-11B-21D-A13T-05 03782716-e528-4835-9328-c698ab94ec4c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-BH-A1EY-11B-21D-A13T-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-BH-A1EY TCGA-BH-A1EY-11B TCGA-BH-A1EY-11B-21D-A13T-05 03782716-e528-4835-9328-c698ab94ec4c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-BH-A1EY-11B-21D-A13T-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-BH-A1EY TCGA-BH-A1EY-11B TCGA-BH-A1EY-11B-21D-A188-09 278795b3-a369-43fb-9d82-4d6d3b92ade3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1EY TCGA-BH-A1EY-11B TCGA-BH-A1EY-11B-21W-A14R-09 7975ef5e-7dfb-4657-8106-843575d2ec4b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1EY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11D-A133-02 7e6e3075-26dc-4c52-be14-1ec603743d3b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11D-A134-01 898c61fd-25f3-480d-864b-0902639e7ca8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11D-A134-01 898c61fd-25f3-480d-864b-0902639e7ca8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B05_755900.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11D-A134-01 898c61fd-25f3-480d-864b-0902639e7ca8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B05_755900.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11D-A134-01 898c61fd-25f3-480d-864b-0902639e7ca8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B05_755900.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11D-A134-01 898c61fd-25f3-480d-864b-0902639e7ca8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B05_755900.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11D-A134-01 898c61fd-25f3-480d-864b-0902639e7ca8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B05_755900.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11D-A134-01 898c61fd-25f3-480d-864b-0902639e7ca8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B05_755900.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11D-A134-01 898c61fd-25f3-480d-864b-0902639e7ca8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B05_755900.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11D-A134-01 898c61fd-25f3-480d-864b-0902639e7ca8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B05_755900.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11D-A135-09 3903b485-366d-4318-b17d-a0194f032bd8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11D-A135-09 3903b485-366d-4318-b17d-a0194f032bd8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11D-A138-05 e7bc9dba-382d-453f-9f15-f6c31e8ee398 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11D-A138-05 e7bc9dba-382d-453f-9f15-f6c31e8ee398 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324071_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11D-A138-05 e7bc9dba-382d-453f-9f15-f6c31e8ee398 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324071_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11D-A138-05 e7bc9dba-382d-453f-9f15-f6c31e8ee398 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-2.TCGA-BH-A1F0-01A-11D-A138-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0 103 07-NOV-11 05.19.10.670000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11D-A138-05 e7bc9dba-382d-453f-9f15-f6c31e8ee398 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-3.TCGA-BH-A1F0-01A-11D-A138-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0 103 07-NOV-11 05.59.32.897000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11R-A136-13 f5b8d50e-db75-4fc8-9071-96e743a6b9cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11R-A136-13 f5b8d50e-db75-4fc8-9071-96e743a6b9cf miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1F0-01A-11R-A136-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11R-A136-13 f5b8d50e-db75-4fc8-9071-96e743a6b9cf miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1F0-01A-11R-A136-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11R-A137-07 d31b476c-c047-4e5f-a0cb-eff1065f0121 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11R-A137-07 d31b476c-c047-4e5f-a0cb-eff1065f0121 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013096_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 103 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11R-A137-07 d31b476c-c047-4e5f-a0cb-eff1065f0121 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013096_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 103 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11R-A137-07 d31b476c-c047-4e5f-a0cb-eff1065f0121 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013096_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 103 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11R-A137-07 d31b476c-c047-4e5f-a0cb-eff1065f0121 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451922.TCGA-BH-A1F0-01A-11R-A137-07.110801_UNC13-SN749_0088_AD0DTHABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11R-A137-07 d31b476c-c047-4e5f-a0cb-eff1065f0121 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451924.TCGA-BH-A1F0-01A-11R-A137-07.110801_UNC13-SN749_0088_AD0DTHABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11R-A137-07 d31b476c-c047-4e5f-a0cb-eff1065f0121 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451933.TCGA-BH-A1F0-01A-11R-A137-07.110801_UNC13-SN749_0088_AD0DTHABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-01A TCGA-BH-A1F0-01A-11W-A14P-09 82eedfed-b091-44c0-bace-b1e930b7fa2a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23D-A133-02 87cd5cfa-1045-4401-aa58-60c4ae2d5ed8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23D-A134-01 bd0d0341-cdfc-41f3-a599-132e7da86da5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23D-A134-01 bd0d0341-cdfc-41f3-a599-132e7da86da5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G03_755814.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23D-A134-01 bd0d0341-cdfc-41f3-a599-132e7da86da5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G03_755814.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23D-A134-01 bd0d0341-cdfc-41f3-a599-132e7da86da5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G03_755814.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23D-A134-01 bd0d0341-cdfc-41f3-a599-132e7da86da5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G03_755814.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23D-A134-01 bd0d0341-cdfc-41f3-a599-132e7da86da5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G03_755814.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23D-A134-01 bd0d0341-cdfc-41f3-a599-132e7da86da5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G03_755814.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23D-A134-01 bd0d0341-cdfc-41f3-a599-132e7da86da5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G03_755814.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23D-A134-01 bd0d0341-cdfc-41f3-a599-132e7da86da5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G03_755814.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23D-A135-09 64613d52-ad24-4f06-8668-3e058043911b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23D-A135-09 64613d52-ad24-4f06-8668-3e058043911b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23D-A138-05 e752193f-528a-4478-a674-330df0479db2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23D-A138-05 e752193f-528a-4478-a674-330df0479db2 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324048_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23D-A138-05 e752193f-528a-4478-a674-330df0479db2 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324048_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23D-A138-05 e752193f-528a-4478-a674-330df0479db2 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-2.TCGA-BH-A1F0-11B-23D-A138-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0 103 07-NOV-11 05.19.10.670000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23D-A138-05 e752193f-528a-4478-a674-330df0479db2 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-3.TCGA-BH-A1F0-11B-23D-A138-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0 103 07-NOV-11 05.59.32.897000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23R-A136-13 a36e28c7-be9f-4c1e-970b-605c98a60789 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23R-A136-13 a36e28c7-be9f-4c1e-970b-605c98a60789 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1F0-11B-23R-A136-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23R-A136-13 a36e28c7-be9f-4c1e-970b-605c98a60789 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1F0-11B-23R-A136-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23R-A137-07 889f6f61-9b3a-406c-9af8-ddee74a8a19e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23R-A137-07 889f6f61-9b3a-406c-9af8-ddee74a8a19e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013076_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 103 24-JUL-11 07.52.05.474000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23R-A137-07 889f6f61-9b3a-406c-9af8-ddee74a8a19e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013076_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 103 24-JUL-11 07.49.44.366000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23R-A137-07 889f6f61-9b3a-406c-9af8-ddee74a8a19e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013076_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 103 24-JUL-11 07.50.27.960000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23R-A137-07 889f6f61-9b3a-406c-9af8-ddee74a8a19e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451729.TCGA-BH-A1F0-11B-23R-A137-07.110801_UNC13-SN749_0088_AD0DTHABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23R-A137-07 889f6f61-9b3a-406c-9af8-ddee74a8a19e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451731.TCGA-BH-A1F0-11B-23R-A137-07.110801_UNC13-SN749_0088_AD0DTHABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23R-A137-07 889f6f61-9b3a-406c-9af8-ddee74a8a19e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451747.TCGA-BH-A1F0-11B-23R-A137-07.110801_UNC13-SN749_0088_AD0DTHABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1F0 TCGA-BH-A1F0-11B TCGA-BH-A1F0-11B-23W-A14P-09 90e5e068-0a1e-402e-9416-4627b219d7b7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-BH-A1F2 TCGA-BH-A1F2-01A TCGA-BH-A1F2-01A-31D-A13I-02 72ce47c3-d7a9-454a-be1c-094e58713f00 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F2 TCGA-BH-A1F2-01A TCGA-BH-A1F2-01A-31D-A13J-01 684a637d-c0a0-471a-86d0-1e19aff9f17e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F2 TCGA-BH-A1F2-01A TCGA-BH-A1F2-01A-31D-A13J-01 684a637d-c0a0-471a-86d0-1e19aff9f17e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C07_771874.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-BH-A1F2 TCGA-BH-A1F2-01A TCGA-BH-A1F2-01A-31D-A13J-01 684a637d-c0a0-471a-86d0-1e19aff9f17e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C07_771874.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F2 TCGA-BH-A1F2-01A TCGA-BH-A1F2-01A-31D-A13J-01 684a637d-c0a0-471a-86d0-1e19aff9f17e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C07_771874.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F2 TCGA-BH-A1F2-01A TCGA-BH-A1F2-01A-31D-A13J-01 684a637d-c0a0-471a-86d0-1e19aff9f17e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C07_771874.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F2 TCGA-BH-A1F2-01A TCGA-BH-A1F2-01A-31D-A13J-01 684a637d-c0a0-471a-86d0-1e19aff9f17e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C07_771874.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F2 TCGA-BH-A1F2-01A TCGA-BH-A1F2-01A-31D-A13J-01 684a637d-c0a0-471a-86d0-1e19aff9f17e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C07_771874.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F2 TCGA-BH-A1F2-01A TCGA-BH-A1F2-01A-31D-A13J-01 684a637d-c0a0-471a-86d0-1e19aff9f17e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C07_771874.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F2 TCGA-BH-A1F2-01A TCGA-BH-A1F2-01A-31D-A13J-01 684a637d-c0a0-471a-86d0-1e19aff9f17e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C07_771874.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-BH-A1F2 TCGA-BH-A1F2-01A TCGA-BH-A1F2-01A-31D-A13K-05 f916453d-5172-4764-a1e7-3fe1ec1bea90 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F2 TCGA-BH-A1F2-01A TCGA-BH-A1F2-01A-31D-A13K-05 f916453d-5172-4764-a1e7-3fe1ec1bea90 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818132_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1F2 TCGA-BH-A1F2-01A TCGA-BH-A1F2-01A-31D-A13K-05 f916453d-5172-4764-a1e7-3fe1ec1bea90 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818132_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1F2 TCGA-BH-A1F2-01A TCGA-BH-A1F2-01A-31D-A13K-05 f916453d-5172-4764-a1e7-3fe1ec1bea90 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-BH-A1F2-01A-31D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-BH-A1F2 TCGA-BH-A1F2-01A TCGA-BH-A1F2-01A-31D-A13K-05 f916453d-5172-4764-a1e7-3fe1ec1bea90 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-BH-A1F2-01A-31D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-BH-A1F2 TCGA-BH-A1F2-01A TCGA-BH-A1F2-01A-31D-A13L-09 a5c67494-d843-4b14-ba9c-d077396ed2dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F2 TCGA-BH-A1F2-01A TCGA-BH-A1F2-01A-31R-A13P-13 3afc58ee-de4a-437e-856d-73b72f9bd8c0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F2 TCGA-BH-A1F2-01A TCGA-BH-A1F2-01A-31R-A13P-13 3afc58ee-de4a-437e-856d-73b72f9bd8c0 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1F2-01A-31R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1F2 TCGA-BH-A1F2-01A TCGA-BH-A1F2-01A-31R-A13P-13 3afc58ee-de4a-437e-856d-73b72f9bd8c0 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1F2-01A-31R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1F2 TCGA-BH-A1F2-01A TCGA-BH-A1F2-01A-31R-A13Q-07 dbba4276-4b85-4309-8f98-951313c3a3dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F2 TCGA-BH-A1F2-01A TCGA-BH-A1F2-01A-31R-A13Q-07 dbba4276-4b85-4309-8f98-951313c3a3dc RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_510555.TCGA-BH-A1F2-01A-31R-A13Q-07.110901_UNC12-SN629_0126_AD0DG0ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1F2 TCGA-BH-A1F2-01A TCGA-BH-A1F2-01A-31R-A13Q-07 dbba4276-4b85-4309-8f98-951313c3a3dc RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_510569.TCGA-BH-A1F2-01A-31R-A13Q-07.110901_UNC12-SN629_0126_AD0DG0ABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1F2 TCGA-BH-A1F2-01A TCGA-BH-A1F2-01A-31R-A13Q-07 dbba4276-4b85-4309-8f98-951313c3a3dc RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_510608.TCGA-BH-A1F2-01A-31R-A13Q-07.110901_UNC12-SN629_0126_AD0DG0ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1F2 TCGA-BH-A1F2-01A TCGA-BH-A1F2-01A-31W-A14Q-09 b5db32e0-b6bc-4436-8b46-2131ae756245 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F2 TCGA-BH-A1F2-11A TCGA-BH-A1F2-11A-32D-A13M-02 c01db41b-b436-4c5b-bf4c-5ae6416c6d8e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F2 TCGA-BH-A1F2-11A TCGA-BH-A1F2-11A-32D-A13N-01 54dc3f7d-f8db-4d73-834c-f29054702fbe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F2 TCGA-BH-A1F2-11A TCGA-BH-A1F2-11A-32D-A13N-01 54dc3f7d-f8db-4d73-834c-f29054702fbe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E11_771938.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-BH-A1F2 TCGA-BH-A1F2-11A TCGA-BH-A1F2-11A-32D-A13N-01 54dc3f7d-f8db-4d73-834c-f29054702fbe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E11_771938.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F2 TCGA-BH-A1F2-11A TCGA-BH-A1F2-11A-32D-A13N-01 54dc3f7d-f8db-4d73-834c-f29054702fbe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E11_771938.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F2 TCGA-BH-A1F2-11A TCGA-BH-A1F2-11A-32D-A13N-01 54dc3f7d-f8db-4d73-834c-f29054702fbe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E11_771938.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F2 TCGA-BH-A1F2-11A TCGA-BH-A1F2-11A-32D-A13N-01 54dc3f7d-f8db-4d73-834c-f29054702fbe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E11_771938.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F2 TCGA-BH-A1F2-11A TCGA-BH-A1F2-11A-32D-A13N-01 54dc3f7d-f8db-4d73-834c-f29054702fbe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E11_771938.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F2 TCGA-BH-A1F2-11A TCGA-BH-A1F2-11A-32D-A13N-01 54dc3f7d-f8db-4d73-834c-f29054702fbe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E11_771938.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F2 TCGA-BH-A1F2-11A TCGA-BH-A1F2-11A-32D-A13N-01 54dc3f7d-f8db-4d73-834c-f29054702fbe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E11_771938.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-BH-A1F2 TCGA-BH-A1F2-11A TCGA-BH-A1F2-11A-32D-A13O-09 4bebfe15-a02b-4750-93ff-a93f6667b13e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F2 TCGA-BH-A1F2-11A TCGA-BH-A1F2-11A-32D-A13T-05 912a631c-efe3-4455-9a73-26a9dac2c800 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F2 TCGA-BH-A1F2-11A TCGA-BH-A1F2-11A-32R-A13P-13 0dd67955-5845-47b2-aa3c-b9a8456e746b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1F2-11A-32R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1F2 TCGA-BH-A1F2-11A TCGA-BH-A1F2-11A-32R-A13P-13 0dd67955-5845-47b2-aa3c-b9a8456e746b miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-BH-A1F5-01A-12D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-BH-A1F5 TCGA-BH-A1F5-01A TCGA-BH-A1F5-01A-12D-A13L-09 82121518-98d6-4db6-8be4-74bbe232a9ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F5 TCGA-BH-A1F5-01A TCGA-BH-A1F5-01A-12R-A13P-13 259c05b4-2cf0-4e8f-8883-423b19cc9091 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F5 TCGA-BH-A1F5-01A TCGA-BH-A1F5-01A-12R-A13P-13 259c05b4-2cf0-4e8f-8883-423b19cc9091 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1F5-01A-12R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1F5 TCGA-BH-A1F5-01A TCGA-BH-A1F5-01A-12R-A13P-13 259c05b4-2cf0-4e8f-8883-423b19cc9091 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1F5-01A-12R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1F5 TCGA-BH-A1F5-01A TCGA-BH-A1F5-01A-12R-A13Q-07 07c52f68-8ece-4702-8573-9b21f32df787 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F5 TCGA-BH-A1F5-01A TCGA-BH-A1F5-01A-12R-A13Q-07 07c52f68-8ece-4702-8573-9b21f32df787 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_509742.TCGA-BH-A1F5-01A-12R-A13Q-07.110901_UNC12-SN629_0126_AD0DG0ABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1F5 TCGA-BH-A1F5-01A TCGA-BH-A1F5-01A-12R-A13Q-07 07c52f68-8ece-4702-8573-9b21f32df787 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_509756.TCGA-BH-A1F5-01A-12R-A13Q-07.110901_UNC12-SN629_0126_AD0DG0ABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1F5 TCGA-BH-A1F5-01A TCGA-BH-A1F5-01A-12R-A13Q-07 07c52f68-8ece-4702-8573-9b21f32df787 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_509778.TCGA-BH-A1F5-01A-12R-A13Q-07.110901_UNC12-SN629_0126_AD0DG0ABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1F5 TCGA-BH-A1F5-01A TCGA-BH-A1F5-01A-12W-A14Q-09 210049fe-284b-42a2-ae32-89318a4d2aeb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F5 TCGA-BH-A1F5-11A TCGA-BH-A1F5-11A-43D-A13M-02 ca5b8143-9d7a-4eb9-b4e6-e301933b27af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F5 TCGA-BH-A1F5-11A TCGA-BH-A1F5-11A-43D-A13N-01 6f004bb3-3581-4d16-a20a-f38a2ea52c6d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F5 TCGA-BH-A1F5-11A TCGA-BH-A1F5-11A-43D-A13N-01 6f004bb3-3581-4d16-a20a-f38a2ea52c6d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C12_771918.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-BH-A1F5 TCGA-BH-A1F5-11A TCGA-BH-A1F5-11A-43D-A13N-01 6f004bb3-3581-4d16-a20a-f38a2ea52c6d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C12_771918.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F5 TCGA-BH-A1F5-11A TCGA-BH-A1F5-11A-43D-A13N-01 6f004bb3-3581-4d16-a20a-f38a2ea52c6d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C12_771918.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F5 TCGA-BH-A1F5-11A TCGA-BH-A1F5-11A-43D-A13N-01 6f004bb3-3581-4d16-a20a-f38a2ea52c6d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C12_771918.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F5 TCGA-BH-A1F5-11A TCGA-BH-A1F5-11A-43D-A13N-01 6f004bb3-3581-4d16-a20a-f38a2ea52c6d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C12_771918.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F5 TCGA-BH-A1F5-11A TCGA-BH-A1F5-11A-43D-A13N-01 6f004bb3-3581-4d16-a20a-f38a2ea52c6d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C12_771918.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F5 TCGA-BH-A1F5-11A TCGA-BH-A1F5-11A-43D-A13N-01 6f004bb3-3581-4d16-a20a-f38a2ea52c6d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C12_771918.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F5 TCGA-BH-A1F5-11A TCGA-BH-A1F5-11A-43D-A13N-01 6f004bb3-3581-4d16-a20a-f38a2ea52c6d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C12_771918.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-BH-A1F5 TCGA-BH-A1F5-11A TCGA-BH-A1F5-11A-43D-A13O-09 7165c7b4-d552-496f-a2cd-5afe7c99bbea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F5 TCGA-BH-A1F5-11A TCGA-BH-A1F5-11A-43D-A13T-05 a23a7522-5b45-4371-8d18-b6d68574fd6f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F5 TCGA-BH-A1F5-11A TCGA-BH-A1F5-11A-43D-A13T-05 a23a7522-5b45-4371-8d18-b6d68574fd6f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818135_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1F5 TCGA-BH-A1F5-11A TCGA-BH-A1F5-11A-43D-A13T-05 a23a7522-5b45-4371-8d18-b6d68574fd6f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818135_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1F5 TCGA-BH-A1F5-11A TCGA-BH-A1F5-11A-43D-A13T-05 a23a7522-5b45-4371-8d18-b6d68574fd6f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-BH-A1F5-11A-43D-A13T-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-BH-A1F5 TCGA-BH-A1F5-11A TCGA-BH-A1F5-11A-43D-A13T-05 a23a7522-5b45-4371-8d18-b6d68574fd6f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-BH-A1F5-11A-43D-A13T-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-BH-A1F5 TCGA-BH-A1F5-11A TCGA-BH-A1F5-11A-43W-A14R-09 303741a4-f148-4051-9a34-8d9c196de36b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F6 TCGA-BH-A1F6-01A TCGA-BH-A1F6-01A-11D-A13I-02 87aeb66b-5aff-4366-b458-701b2256bcd1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F6 TCGA-BH-A1F6-01A TCGA-BH-A1F6-01A-11D-A13J-01 9221bace-db00-4adc-ac61-aa064672c1ad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F6 TCGA-BH-A1F6-01A TCGA-BH-A1F6-01A-11D-A13J-01 9221bace-db00-4adc-ac61-aa064672c1ad SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F06_771926.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-BH-A1F6 TCGA-BH-A1F6-01A TCGA-BH-A1F6-01A-11D-A13J-01 9221bace-db00-4adc-ac61-aa064672c1ad SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F06_771926.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F6 TCGA-BH-A1F6-01A TCGA-BH-A1F6-01A-11D-A13J-01 9221bace-db00-4adc-ac61-aa064672c1ad SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F06_771926.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F6 TCGA-BH-A1F6-01A TCGA-BH-A1F6-01A-11D-A13J-01 9221bace-db00-4adc-ac61-aa064672c1ad SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F06_771926.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F6 TCGA-BH-A1F6-01A TCGA-BH-A1F6-01A-11D-A13J-01 9221bace-db00-4adc-ac61-aa064672c1ad SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F06_771926.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F6 TCGA-BH-A1F6-01A TCGA-BH-A1F6-01A-11D-A13J-01 9221bace-db00-4adc-ac61-aa064672c1ad SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F06_771926.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F6 TCGA-BH-A1F6-01A TCGA-BH-A1F6-01A-11D-A13J-01 9221bace-db00-4adc-ac61-aa064672c1ad SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F06_771926.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F6 TCGA-BH-A1F6-01A TCGA-BH-A1F6-01A-11D-A13J-01 9221bace-db00-4adc-ac61-aa064672c1ad SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F06_771926.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-BH-A1F6 TCGA-BH-A1F6-01A TCGA-BH-A1F6-01A-11D-A13K-05 4657604a-0612-4fc4-b4cc-397f42c1756d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F6 TCGA-BH-A1F6-01A TCGA-BH-A1F6-01A-11D-A13K-05 4657604a-0612-4fc4-b4cc-397f42c1756d DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-BH-A1F6-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-BH-A1F6 TCGA-BH-A1F6-01A TCGA-BH-A1F6-01A-11D-A13K-05 4657604a-0612-4fc4-b4cc-397f42c1756d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-BH-A1F6-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-BH-A1F6 TCGA-BH-A1F6-01A TCGA-BH-A1F6-01A-11D-A13L-09 34eb095d-3d44-4c59-9ef5-94592ba97900 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F6 TCGA-BH-A1F6-01A TCGA-BH-A1F6-01A-11R-A13P-13 d37efdf7-1a6e-4931-9d34-0d0e502c16ee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F6 TCGA-BH-A1F6-01A TCGA-BH-A1F6-01A-11R-A13P-13 d37efdf7-1a6e-4931-9d34-0d0e502c16ee miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1F6-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1F6 TCGA-BH-A1F6-01A TCGA-BH-A1F6-01A-11R-A13P-13 d37efdf7-1a6e-4931-9d34-0d0e502c16ee miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1F6-01A-11R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1F6 TCGA-BH-A1F6-01A TCGA-BH-A1F6-01A-11R-A13Q-07 5f5a884c-ffbd-401a-8689-baded1bdbe50 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F6 TCGA-BH-A1F6-01A TCGA-BH-A1F6-01A-11W-A14Q-09 539d6257-9d62-4d8b-8342-9cd262d6f306 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F6 TCGA-BH-A1F6-11B TCGA-BH-A1F6-11B-94D-A13M-02 8e823dbe-561f-4dba-bdee-df8236c94200 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F6 TCGA-BH-A1F6-11B TCGA-BH-A1F6-11B-94D-A13N-01 3d7d7757-7a3b-408c-8f15-afd7df3a4dc6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F6 TCGA-BH-A1F6-11B TCGA-BH-A1F6-11B-94D-A13N-01 3d7d7757-7a3b-408c-8f15-afd7df3a4dc6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E08_772034.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-BH-A1F6 TCGA-BH-A1F6-11B TCGA-BH-A1F6-11B-94D-A13N-01 3d7d7757-7a3b-408c-8f15-afd7df3a4dc6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E08_772034.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F6 TCGA-BH-A1F6-11B TCGA-BH-A1F6-11B-94D-A13N-01 3d7d7757-7a3b-408c-8f15-afd7df3a4dc6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E08_772034.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F6 TCGA-BH-A1F6-11B TCGA-BH-A1F6-11B-94D-A13N-01 3d7d7757-7a3b-408c-8f15-afd7df3a4dc6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E08_772034.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F6 TCGA-BH-A1F6-11B TCGA-BH-A1F6-11B-94D-A13N-01 3d7d7757-7a3b-408c-8f15-afd7df3a4dc6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E08_772034.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F6 TCGA-BH-A1F6-11B TCGA-BH-A1F6-11B-94D-A13N-01 3d7d7757-7a3b-408c-8f15-afd7df3a4dc6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E08_772034.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F6 TCGA-BH-A1F6-11B TCGA-BH-A1F6-11B-94D-A13N-01 3d7d7757-7a3b-408c-8f15-afd7df3a4dc6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E08_772034.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1F6 TCGA-BH-A1F6-11B TCGA-BH-A1F6-11B-94D-A13N-01 3d7d7757-7a3b-408c-8f15-afd7df3a4dc6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E08_772034.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-BH-A1F6 TCGA-BH-A1F6-11B TCGA-BH-A1F6-11B-94D-A13O-09 9a86338f-4176-4931-ba32-457e92d4b0dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F6 TCGA-BH-A1F6-11B TCGA-BH-A1F6-11B-94D-A13T-05 792343f3-5608-4d33-a535-8256c4916699 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1F6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1F6 TCGA-BH-A1F6-11B TCGA-BH-A1F6-11B-94D-A13T-05 792343f3-5608-4d33-a535-8256c4916699 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-BH-A1F6-11B-94D-A13T-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-BH-A1F6 TCGA-BH-A1F6-11B TCGA-BH-A1F6-11B-94D-A13T-05 792343f3-5608-4d33-a535-8256c4916699 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-BH-A1F6-11B-94D-A13T-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-BH-A1F6 TCGA-BH-A1F6-11B TCGA-BH-A1F6-11B-94R-A13P-13 b6deae99-675c-40fd-867b-722672001edf Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B11_771970.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FB TCGA-BH-A1FB-01A TCGA-BH-A1FB-01A-11D-A13J-01 ed5f14b2-ffc0-4eb6-bbb0-576c2c102128 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B11_771970.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FB TCGA-BH-A1FB-01A TCGA-BH-A1FB-01A-11D-A13J-01 ed5f14b2-ffc0-4eb6-bbb0-576c2c102128 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B11_771970.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-BH-A1FB TCGA-BH-A1FB-01A TCGA-BH-A1FB-01A-11D-A13K-05 00d2d597-82c5-4a9a-83ba-cc8398e2746d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FB TCGA-BH-A1FB-01A TCGA-BH-A1FB-01A-11D-A13K-05 00d2d597-82c5-4a9a-83ba-cc8398e2746d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818144_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1FB TCGA-BH-A1FB-01A TCGA-BH-A1FB-01A-11D-A13K-05 00d2d597-82c5-4a9a-83ba-cc8398e2746d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818144_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1FB TCGA-BH-A1FB-01A TCGA-BH-A1FB-01A-11D-A13K-05 00d2d597-82c5-4a9a-83ba-cc8398e2746d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-BH-A1FB-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-BH-A1FB TCGA-BH-A1FB-01A TCGA-BH-A1FB-01A-11D-A13K-05 00d2d597-82c5-4a9a-83ba-cc8398e2746d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-BH-A1FB-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-BH-A1FB TCGA-BH-A1FB-01A TCGA-BH-A1FB-01A-11D-A13L-09 856a07e9-0a42-43f8-a9e5-52f0c8180415 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FB TCGA-BH-A1FB-01A TCGA-BH-A1FB-01A-11D-A17G-09 1d86f341-15fb-4676-93dd-7a2a44d9d15a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FB TCGA-BH-A1FB-01A TCGA-BH-A1FB-01A-11R-A13P-13 6c1f0930-ef16-4cfb-8edb-9d17530ac266 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FB TCGA-BH-A1FB-01A TCGA-BH-A1FB-01A-11R-A13P-13 6c1f0930-ef16-4cfb-8edb-9d17530ac266 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1FB-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1FB TCGA-BH-A1FB-01A TCGA-BH-A1FB-01A-11R-A13P-13 6c1f0930-ef16-4cfb-8edb-9d17530ac266 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1FB-01A-11R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1FB TCGA-BH-A1FB-01A TCGA-BH-A1FB-01A-11R-A13Q-07 5b262ec0-72f2-4c54-820e-a39afad67212 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FB TCGA-BH-A1FB-01A TCGA-BH-A1FB-01A-11W-A14Q-09 c7d79f96-d0f0-43f2-8266-1bb08fd4feba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FB TCGA-BH-A1FB-11A TCGA-BH-A1FB-11A-33D-A13M-02 5e7e1d45-d2ec-4acf-874a-3bc01254a836 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FB TCGA-BH-A1FB-11A TCGA-BH-A1FB-11A-33D-A13N-01 73bbcca4-80e7-4a98-bd1a-9d4d22ad5050 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E02_771870.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E02_771870.ismpolish.data.txt'. TCGA-BH-A1FB TCGA-BH-A1FB-11A TCGA-BH-A1FB-11A-33D-A13N-01 73bbcca4-80e7-4a98-bd1a-9d4d22ad5050 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E02_771870.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E02_771870.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E02_771870.ismpolish.data.txt'. TCGA-BH-A1FB TCGA-BH-A1FB-11A TCGA-BH-A1FB-11A-33D-A13N-01 73bbcca4-80e7-4a98-bd1a-9d4d22ad5050 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E02_771870.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E02_771870.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E02_771870.ismpolish.data.txt'. TCGA-BH-A1FB TCGA-BH-A1FB-11A TCGA-BH-A1FB-11A-33D-A13O-09 09cd2350-c721-44ab-a291-fd45135db49b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FB TCGA-BH-A1FB-11A TCGA-BH-A1FB-11A-33D-A13T-05 cea32d63-e8f9-48c5-9ab2-5fe2df6bbd5b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FB TCGA-BH-A1FB-11A TCGA-BH-A1FB-11A-33D-A13T-05 cea32d63-e8f9-48c5-9ab2-5fe2df6bbd5b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818144_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1FB TCGA-BH-A1FB-11A TCGA-BH-A1FB-11A-33D-A13T-05 cea32d63-e8f9-48c5-9ab2-5fe2df6bbd5b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818144_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1FB TCGA-BH-A1FB-11A TCGA-BH-A1FB-11A-33D-A13T-05 cea32d63-e8f9-48c5-9ab2-5fe2df6bbd5b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-BH-A1FB-11A-33D-A13T-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-BH-A1FB TCGA-BH-A1FB-11A TCGA-BH-A1FB-11A-33D-A13T-05 cea32d63-e8f9-48c5-9ab2-5fe2df6bbd5b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-BH-A1FB-11A-33D-A13T-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-BH-A1FB TCGA-BH-A1FB-11A TCGA-BH-A1FB-11A-33R-A13P-13 1b0e4a85-c4ac-449c-beea-538af5327c13 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FB TCGA-BH-A1FB-11A TCGA-BH-A1FB-11A-33R-A13P-13 1b0e4a85-c4ac-449c-beea-538af5327c13 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1FB-11A-33R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1FB TCGA-BH-A1FB-11A TCGA-BH-A1FB-11A-33R-A13P-13 1b0e4a85-c4ac-449c-beea-538af5327c13 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1FB-11A-33R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1FB TCGA-BH-A1FB-11A TCGA-BH-A1FB-11A-33R-A13Q-07 71899388-d223-4774-a1ce-3be260240b2c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FB TCGA-BH-A1FB-11A TCGA-BH-A1FB-11A-33W-A14R-09 bfe9bdc4-6331-4227-9594-9dc8401206e6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FC TCGA-BH-A1FC-01A TCGA-BH-A1FC-01A-11D-A13I-02 541fbd7b-c0ec-4918-a62a-eb7696af18e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FC TCGA-BH-A1FC-01A TCGA-BH-A1FC-01A-11D-A13J-01 2b2b809a-ad8d-42c1-baf9-39886ab3d8b1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FC TCGA-BH-A1FC-01A TCGA-BH-A1FC-01A-11D-A13J-01 2b2b809a-ad8d-42c1-baf9-39886ab3d8b1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D08_771912.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-BH-A1FC TCGA-BH-A1FC-01A TCGA-BH-A1FC-01A-11D-A13J-01 2b2b809a-ad8d-42c1-baf9-39886ab3d8b1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D08_771912.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FC TCGA-BH-A1FC-01A TCGA-BH-A1FC-01A-11D-A13J-01 2b2b809a-ad8d-42c1-baf9-39886ab3d8b1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D08_771912.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FC TCGA-BH-A1FC-01A TCGA-BH-A1FC-01A-11D-A13J-01 2b2b809a-ad8d-42c1-baf9-39886ab3d8b1 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D08_771912.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-BH-A1FC TCGA-BH-A1FC-01A TCGA-BH-A1FC-01A-11D-A13K-05 008f746c-ac9a-46fb-907c-dec94c6ffd9e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FC TCGA-BH-A1FC-01A TCGA-BH-A1FC-01A-11D-A13K-05 008f746c-ac9a-46fb-907c-dec94c6ffd9e DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-BH-A1FC-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-BH-A1FC TCGA-BH-A1FC-01A TCGA-BH-A1FC-01A-11D-A13K-05 008f746c-ac9a-46fb-907c-dec94c6ffd9e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-BH-A1FC-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-BH-A1FC TCGA-BH-A1FC-01A TCGA-BH-A1FC-01A-11D-A13L-09 84c77098-03d0-4b22-afb1-797703e85c6c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FC TCGA-BH-A1FC-01A TCGA-BH-A1FC-01A-11R-A13P-13 a435fd99-d592-419e-bc15-10ceab57f6c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FC TCGA-BH-A1FC-01A TCGA-BH-A1FC-01A-11R-A13P-13 a435fd99-d592-419e-bc15-10ceab57f6c1 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E06_771948.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FC TCGA-BH-A1FC-11A TCGA-BH-A1FC-11A-32D-A13N-01 3a72e3fa-2614-4ec3-a507-83c8d179632f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E06_771948.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FC TCGA-BH-A1FC-11A TCGA-BH-A1FC-11A-32D-A13N-01 3a72e3fa-2614-4ec3-a507-83c8d179632f SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FC TCGA-BH-A1FC-11A TCGA-BH-A1FC-11A-32D-A13T-05 8e603743-5c64-4e9f-84d5-3c8501e7ea3b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818129_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1FC TCGA-BH-A1FC-11A TCGA-BH-A1FC-11A-32D-A13T-05 8e603743-5c64-4e9f-84d5-3c8501e7ea3b DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FC TCGA-BH-A1FC-11A TCGA-BH-A1FC-11A-32R-A13P-13 bbe44d9d-44f5-4799-9657-f085d4bd032c miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1FC-11A-32R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1FC TCGA-BH-A1FC-11A TCGA-BH-A1FC-11A-32R-A13P-13 bbe44d9d-44f5-4799-9657-f085d4bd032c miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_400830.TCGA-BH-A1FD-01A-11R-A13Q-07.110729_UNC9-SN296_0211_BC046VABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FD TCGA-BH-A1FD-01A TCGA-BH-A1FD-01A-11R-A13Q-07 744ed141-8809-4bc9-90e6-74098383914e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_400888.TCGA-BH-A1FD-01A-11R-A13Q-07.110729_UNC9-SN296_0211_BC046VABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FD TCGA-BH-A1FD-01A TCGA-BH-A1FD-01A-11W-A14Q-09 b372b5cd-4c38-4cd3-95e0-8708ce5437e7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FD TCGA-BH-A1FD-11B TCGA-BH-A1FD-11B-21D-A13M-02 41af148b-0120-4eeb-acd7-0db3dd8d9551 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FD TCGA-BH-A1FD-11B TCGA-BH-A1FD-11B-21D-A13N-01 f228058f-c6f4-447f-823c-a083da25e0e0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FD TCGA-BH-A1FD-11B TCGA-BH-A1FD-11B-21D-A13N-01 f228058f-c6f4-447f-823c-a083da25e0e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C09_771932.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-BH-A1FD TCGA-BH-A1FD-11B TCGA-BH-A1FD-11B-21D-A13N-01 f228058f-c6f4-447f-823c-a083da25e0e0 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C09_771932.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FD TCGA-BH-A1FD-11B TCGA-BH-A1FD-11B-21D-A13N-01 f228058f-c6f4-447f-823c-a083da25e0e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C09_771932.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FD TCGA-BH-A1FD-11B TCGA-BH-A1FD-11B-21D-A13N-01 f228058f-c6f4-447f-823c-a083da25e0e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C09_771932.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FD TCGA-BH-A1FD-11B TCGA-BH-A1FD-11B-21D-A13N-01 f228058f-c6f4-447f-823c-a083da25e0e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C09_771932.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FD TCGA-BH-A1FD-11B TCGA-BH-A1FD-11B-21D-A13N-01 f228058f-c6f4-447f-823c-a083da25e0e0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C09_771932.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-BH-A1FD TCGA-BH-A1FD-11B TCGA-BH-A1FD-11B-21D-A13O-09 34eb56b6-eb28-46ca-a5f4-e61a14447e5d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FD TCGA-BH-A1FD-11B TCGA-BH-A1FD-11B-21D-A13T-05 b7bafc0b-88d6-4527-b488-580cefbf8ef9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FD TCGA-BH-A1FD-11B TCGA-BH-A1FD-11B-21D-A13T-05 b7bafc0b-88d6-4527-b488-580cefbf8ef9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818145_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1FD TCGA-BH-A1FD-11B TCGA-BH-A1FD-11B-21D-A13T-05 b7bafc0b-88d6-4527-b488-580cefbf8ef9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818145_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1FD TCGA-BH-A1FD-11B TCGA-BH-A1FD-11B-21D-A13T-05 b7bafc0b-88d6-4527-b488-580cefbf8ef9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-BH-A1FD-11B-21D-A13T-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-BH-A1FD TCGA-BH-A1FD-11B TCGA-BH-A1FD-11B-21D-A13T-05 b7bafc0b-88d6-4527-b488-580cefbf8ef9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-BH-A1FD-11B-21D-A13T-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-BH-A1FD TCGA-BH-A1FD-11B TCGA-BH-A1FD-11B-21R-A13P-13 323fddeb-79f5-4881-a356-8754af86166f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FD TCGA-BH-A1FD-11B TCGA-BH-A1FD-11B-21R-A13P-13 323fddeb-79f5-4881-a356-8754af86166f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1FD-11B-21R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1FD TCGA-BH-A1FD-11B TCGA-BH-A1FD-11B-21R-A13P-13 323fddeb-79f5-4881-a356-8754af86166f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1FD-11B-21R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1FD TCGA-BH-A1FD-11B TCGA-BH-A1FD-11B-21R-A13Q-07 e0ed3e93-0ead-4fc0-a82d-79807c7d5162 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FD TCGA-BH-A1FD-11B TCGA-BH-A1FD-11B-21R-A13Q-07 e0ed3e93-0ead-4fc0-a82d-79807c7d5162 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_844710.TCGA-BH-A1FD-11B-21R-A13Q-07.110921_UNC9-SN296_0242_AD0DDEABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FD TCGA-BH-A1FD-11B TCGA-BH-A1FD-11B-21R-A13Q-07 e0ed3e93-0ead-4fc0-a82d-79807c7d5162 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_844903.TCGA-BH-A1FD-11B-21R-A13Q-07.110921_UNC9-SN296_0242_AD0DDEABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FD TCGA-BH-A1FD-11B TCGA-BH-A1FD-11B-21R-A13Q-07 e0ed3e93-0ead-4fc0-a82d-79807c7d5162 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_845109.TCGA-BH-A1FD-11B-21R-A13Q-07.110921_UNC9-SN296_0242_AD0DDEABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FD TCGA-BH-A1FD-11B TCGA-BH-A1FD-11B-21W-A14R-09 47f4edc6-62d0-42e5-a39a-6101d94f2518 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FE TCGA-BH-A1FE-01A TCGA-BH-A1FE-01A-11D-A13I-02 5f730351-4ee7-49c2-85b9-74ee35c3afaa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FE TCGA-BH-A1FE-01A TCGA-BH-A1FE-01A-11D-A13J-01 1427907e-73c9-42c0-ab7b-64cd9b64d874 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D01_772032.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FE TCGA-BH-A1FE-11B TCGA-BH-A1FE-11B-14D-A13N-01 35266696-d8a6-4490-8764-731d061ac438 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D01_772032.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-BH-A1FE TCGA-BH-A1FE-11B TCGA-BH-A1FE-11B-14D-A13O-09 e4e4b299-d680-4777-bd54-f0fdc60aae0b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FE TCGA-BH-A1FE-11B TCGA-BH-A1FE-11B-14D-A13T-05 4e2e8653-8c10-49ab-9746-ea70aaeb584a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FE TCGA-BH-A1FE-11B TCGA-BH-A1FE-11B-14D-A13T-05 4e2e8653-8c10-49ab-9746-ea70aaeb584a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818132_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1FE TCGA-BH-A1FE-11B TCGA-BH-A1FE-11B-14D-A13T-05 4e2e8653-8c10-49ab-9746-ea70aaeb584a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818132_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1FE TCGA-BH-A1FE-11B TCGA-BH-A1FE-11B-14D-A13T-05 4e2e8653-8c10-49ab-9746-ea70aaeb584a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-BH-A1FE-11B-14D-A13T-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-BH-A1FE TCGA-BH-A1FE-11B TCGA-BH-A1FE-11B-14D-A13T-05 4e2e8653-8c10-49ab-9746-ea70aaeb584a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-BH-A1FE-11B-14D-A13T-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-BH-A1FE TCGA-BH-A1FE-11B TCGA-BH-A1FE-11B-14R-A13P-13 6bddc0e3-fb46-4602-acbd-ec615eb42244 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FE TCGA-BH-A1FE-11B TCGA-BH-A1FE-11B-14R-A13P-13 6bddc0e3-fb46-4602-acbd-ec615eb42244 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1FE-11B-14R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1FE TCGA-BH-A1FE-11B TCGA-BH-A1FE-11B-14R-A13P-13 6bddc0e3-fb46-4602-acbd-ec615eb42244 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1FE-11B-14R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1FE TCGA-BH-A1FE-11B TCGA-BH-A1FE-11B-14R-A13Q-07 64f3f52d-a484-49c6-9048-6eadedd2c2c5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FE TCGA-BH-A1FE-11B TCGA-BH-A1FE-11B-14R-A13Q-07 64f3f52d-a484-49c6-9048-6eadedd2c2c5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_844708.TCGA-BH-A1FE-11B-14R-A13Q-07.110921_UNC9-SN296_0242_AD0DDEABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FE TCGA-BH-A1FE-11B TCGA-BH-A1FE-11B-14R-A13Q-07 64f3f52d-a484-49c6-9048-6eadedd2c2c5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_844874.TCGA-BH-A1FE-11B-14R-A13Q-07.110921_UNC9-SN296_0242_AD0DDEABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FE TCGA-BH-A1FE-11B TCGA-BH-A1FE-11B-14R-A13Q-07 64f3f52d-a484-49c6-9048-6eadedd2c2c5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_845089.TCGA-BH-A1FE-11B-14R-A13Q-07.110921_UNC9-SN296_0242_AD0DDEABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FE TCGA-BH-A1FE-11B TCGA-BH-A1FE-11B-14W-A14R-09 cda19502-062f-4641-b1e6-dd4677fbae4c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-01A TCGA-BH-A1FG-01A-11D-A13I-02 c4dd8b78-847e-4ba5-89e9-e1b73a7d2c64 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-01A TCGA-BH-A1FG-01A-11D-A13J-01 16ab0981-23d8-4602-ac15-898caa502ff4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-01A TCGA-BH-A1FG-01A-11D-A13J-01 16ab0981-23d8-4602-ac15-898caa502ff4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F01_771952.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-BH-A1FG TCGA-BH-A1FG-01A TCGA-BH-A1FG-01A-11D-A13J-01 16ab0981-23d8-4602-ac15-898caa502ff4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F01_771952.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FG TCGA-BH-A1FG-01A TCGA-BH-A1FG-01A-11D-A13J-01 16ab0981-23d8-4602-ac15-898caa502ff4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F01_771952.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FG TCGA-BH-A1FG-01A TCGA-BH-A1FG-01A-11D-A13J-01 16ab0981-23d8-4602-ac15-898caa502ff4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F01_771952.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FG TCGA-BH-A1FG-01A TCGA-BH-A1FG-01A-11D-A13J-01 16ab0981-23d8-4602-ac15-898caa502ff4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F01_771952.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FG TCGA-BH-A1FG-01A TCGA-BH-A1FG-01A-11D-A13J-01 16ab0981-23d8-4602-ac15-898caa502ff4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F01_771952.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FG TCGA-BH-A1FG-01A TCGA-BH-A1FG-01A-11D-A13J-01 16ab0981-23d8-4602-ac15-898caa502ff4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F01_771952.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FG TCGA-BH-A1FG-01A TCGA-BH-A1FG-01A-11D-A13J-01 16ab0981-23d8-4602-ac15-898caa502ff4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F01_771952.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-01A TCGA-BH-A1FG-01A-11D-A13K-05 74b52371-1a6d-4da6-be18-218681e73f75 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-01A TCGA-BH-A1FG-01A-11D-A13K-05 74b52371-1a6d-4da6-be18-218681e73f75 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818135_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-01A TCGA-BH-A1FG-01A-11D-A13K-05 74b52371-1a6d-4da6-be18-218681e73f75 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818135_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-01A TCGA-BH-A1FG-01A-11D-A13K-05 74b52371-1a6d-4da6-be18-218681e73f75 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-BH-A1FG-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-01A TCGA-BH-A1FG-01A-11D-A13K-05 74b52371-1a6d-4da6-be18-218681e73f75 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-BH-A1FG-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-01A TCGA-BH-A1FG-01A-11D-A13L-09 311f2f1a-75c8-4fee-b31d-0815d71a3173 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-01A TCGA-BH-A1FG-01A-11D-A17G-09 18db4b38-ace3-4564-8d45-5182bd40907d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-01A TCGA-BH-A1FG-01A-11R-A13P-13 1549b60f-a3ff-466f-b3b1-c7cbeea68129 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-01A TCGA-BH-A1FG-01A-11R-A13P-13 1549b60f-a3ff-466f-b3b1-c7cbeea68129 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1FG-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-01A TCGA-BH-A1FG-01A-11R-A13P-13 1549b60f-a3ff-466f-b3b1-c7cbeea68129 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1FG-01A-11R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-01A TCGA-BH-A1FG-01A-11R-A13Q-07 39fe5d50-f454-4f7b-b07b-1a59b5c828f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-01A TCGA-BH-A1FG-01A-11R-A13Q-07 39fe5d50-f454-4f7b-b07b-1a59b5c828f9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_705885.TCGA-BH-A1FG-01A-11R-A13Q-07.110824_UNC11-SN627_0145_AD0DL7ABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-01A TCGA-BH-A1FG-01A-11R-A13Q-07 39fe5d50-f454-4f7b-b07b-1a59b5c828f9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_705896.TCGA-BH-A1FG-01A-11R-A13Q-07.110824_UNC11-SN627_0145_AD0DL7ABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-01A TCGA-BH-A1FG-01A-11R-A13Q-07 39fe5d50-f454-4f7b-b07b-1a59b5c828f9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_706056.TCGA-BH-A1FG-01A-11R-A13Q-07.110824_UNC11-SN627_0145_AD0DL7ABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-01A TCGA-BH-A1FG-01A-11W-A14Q-09 807a8a43-5ee8-496a-a3be-98a0cfd068f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-11B TCGA-BH-A1FG-11B-12D-A13M-02 227c7768-ea40-403f-a1fc-81ad32887320 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-11B TCGA-BH-A1FG-11B-12D-A13N-01 29284c39-da91-4d68-bf46-847bef7b32d2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-11B TCGA-BH-A1FG-11B-12D-A13N-01 29284c39-da91-4d68-bf46-847bef7b32d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A12_771946.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-BH-A1FG TCGA-BH-A1FG-11B TCGA-BH-A1FG-11B-12D-A13N-01 29284c39-da91-4d68-bf46-847bef7b32d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A12_771946.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FG TCGA-BH-A1FG-11B TCGA-BH-A1FG-11B-12D-A13N-01 29284c39-da91-4d68-bf46-847bef7b32d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A12_771946.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FG TCGA-BH-A1FG-11B TCGA-BH-A1FG-11B-12D-A13N-01 29284c39-da91-4d68-bf46-847bef7b32d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A12_771946.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FG TCGA-BH-A1FG-11B TCGA-BH-A1FG-11B-12D-A13N-01 29284c39-da91-4d68-bf46-847bef7b32d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A12_771946.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FG TCGA-BH-A1FG-11B TCGA-BH-A1FG-11B-12D-A13N-01 29284c39-da91-4d68-bf46-847bef7b32d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A12_771946.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FG TCGA-BH-A1FG-11B TCGA-BH-A1FG-11B-12D-A13N-01 29284c39-da91-4d68-bf46-847bef7b32d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A12_771946.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FG TCGA-BH-A1FG-11B TCGA-BH-A1FG-11B-12D-A13N-01 29284c39-da91-4d68-bf46-847bef7b32d2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_A12_771946.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-11B TCGA-BH-A1FG-11B-12D-A13O-09 e0c48952-a56b-4c97-89b7-7bc9d7acde38 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-11B TCGA-BH-A1FG-11B-12D-A13T-05 7c62eb3e-0b8c-498f-95fb-4401835622f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-11B TCGA-BH-A1FG-11B-12D-A13T-05 7c62eb3e-0b8c-498f-95fb-4401835622f7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818144_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-11B TCGA-BH-A1FG-11B-12D-A13T-05 7c62eb3e-0b8c-498f-95fb-4401835622f7 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-BH-A1FG-11B-12D-A13T-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-11B TCGA-BH-A1FG-11B-12R-A13P-13 62f41105-d9ff-4b67-a63f-5e94906c9d15 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-11B TCGA-BH-A1FG-11B-12R-A13P-13 62f41105-d9ff-4b67-a63f-5e94906c9d15 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1FG-11B-12R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-11B TCGA-BH-A1FG-11B-12R-A13P-13 62f41105-d9ff-4b67-a63f-5e94906c9d15 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1FG-11B-12R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-11B TCGA-BH-A1FG-11B-12R-A13Q-07 ea037776-3759-425c-a7f4-35e8a5571025 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-11B TCGA-BH-A1FG-11B-12R-A13Q-07 ea037776-3759-425c-a7f4-35e8a5571025 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_844696.TCGA-BH-A1FG-11B-12R-A13Q-07.110921_UNC9-SN296_0242_AD0DDEABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-11B TCGA-BH-A1FG-11B-12R-A13Q-07 ea037776-3759-425c-a7f4-35e8a5571025 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_844791.TCGA-BH-A1FG-11B-12R-A13Q-07.110921_UNC9-SN296_0242_AD0DDEABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-11B TCGA-BH-A1FG-11B-12R-A13Q-07 ea037776-3759-425c-a7f4-35e8a5571025 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_844900.TCGA-BH-A1FG-11B-12R-A13Q-07.110921_UNC9-SN296_0242_AD0DDEABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FG TCGA-BH-A1FG-11B TCGA-BH-A1FG-11B-12W-A14R-09 5dba3e31-c9ae-4ab6-96a2-bc31c5b915e1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-01A TCGA-BH-A1FH-01A-12D-A13I-02 6919bda2-dadc-4aee-b0f0-105d0a376a9a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-01A TCGA-BH-A1FH-01A-12D-A13J-01 8dedb075-afa7-4699-b486-178cdaba1e9e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-01A TCGA-BH-A1FH-01A-12D-A13J-01 8dedb075-afa7-4699-b486-178cdaba1e9e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C03_772004.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-BH-A1FH TCGA-BH-A1FH-01A TCGA-BH-A1FH-01A-12D-A13J-01 8dedb075-afa7-4699-b486-178cdaba1e9e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C03_772004.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FH TCGA-BH-A1FH-01A TCGA-BH-A1FH-01A-12D-A13J-01 8dedb075-afa7-4699-b486-178cdaba1e9e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C03_772004.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FH TCGA-BH-A1FH-01A TCGA-BH-A1FH-01A-12D-A13J-01 8dedb075-afa7-4699-b486-178cdaba1e9e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C03_772004.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FH TCGA-BH-A1FH-01A TCGA-BH-A1FH-01A-12D-A13J-01 8dedb075-afa7-4699-b486-178cdaba1e9e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C03_772004.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FH TCGA-BH-A1FH-01A TCGA-BH-A1FH-01A-12D-A13J-01 8dedb075-afa7-4699-b486-178cdaba1e9e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C03_772004.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FH TCGA-BH-A1FH-01A TCGA-BH-A1FH-01A-12D-A13J-01 8dedb075-afa7-4699-b486-178cdaba1e9e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C03_772004.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FH TCGA-BH-A1FH-01A TCGA-BH-A1FH-01A-12D-A13J-01 8dedb075-afa7-4699-b486-178cdaba1e9e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C03_772004.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-01A TCGA-BH-A1FH-01A-12D-A13K-05 2cc72047-0b84-4576-8526-423693146196 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-01A TCGA-BH-A1FH-01A-12D-A13K-05 2cc72047-0b84-4576-8526-423693146196 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818145_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-01A TCGA-BH-A1FH-01A-12D-A13K-05 2cc72047-0b84-4576-8526-423693146196 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818145_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-01A TCGA-BH-A1FH-01A-12D-A13K-05 2cc72047-0b84-4576-8526-423693146196 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-BH-A1FH-01A-12D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-01A TCGA-BH-A1FH-01A-12D-A13K-05 2cc72047-0b84-4576-8526-423693146196 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-BH-A1FH-01A-12D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-01A TCGA-BH-A1FH-01A-12D-A13L-09 fd6bd486-6371-4892-863e-64838fcea624 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-01A TCGA-BH-A1FH-01A-12R-A13P-13 b501f28d-a219-4765-9cb7-8fa0493d2315 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-01A TCGA-BH-A1FH-01A-12R-A13P-13 b501f28d-a219-4765-9cb7-8fa0493d2315 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1FH-01A-12R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-01A TCGA-BH-A1FH-01A-12R-A13P-13 b501f28d-a219-4765-9cb7-8fa0493d2315 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1FH-01A-12R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-01A TCGA-BH-A1FH-01A-12R-A13Q-07 693a3c69-75bd-435d-874e-f3b90b7ed180 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-01A TCGA-BH-A1FH-01A-12R-A13Q-07 693a3c69-75bd-435d-874e-f3b90b7ed180 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_844711.TCGA-BH-A1FH-01A-12R-A13Q-07.110921_UNC9-SN296_0242_AD0DDEABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-01A TCGA-BH-A1FH-01A-12R-A13Q-07 693a3c69-75bd-435d-874e-f3b90b7ed180 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_844720.TCGA-BH-A1FH-01A-12R-A13Q-07.110921_UNC9-SN296_0242_AD0DDEABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-01A TCGA-BH-A1FH-01A-12R-A13Q-07 693a3c69-75bd-435d-874e-f3b90b7ed180 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_844782.TCGA-BH-A1FH-01A-12R-A13Q-07.110921_UNC9-SN296_0242_AD0DDEABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-01A TCGA-BH-A1FH-01A-12W-A14Q-09 d418d1ba-8acc-4403-a14c-455024f63d16 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-11B TCGA-BH-A1FH-11B-42D-A13M-02 44c2cd6d-7f90-4f06-89a0-c15f6d0a885e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-11B TCGA-BH-A1FH-11B-42D-A13N-01 f31b040b-34f7-4c6f-bc8c-e3ed6349ad38 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-11B TCGA-BH-A1FH-11B-42D-A13N-01 f31b040b-34f7-4c6f-bc8c-e3ed6349ad38 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F10_771852.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-BH-A1FH TCGA-BH-A1FH-11B TCGA-BH-A1FH-11B-42D-A13N-01 f31b040b-34f7-4c6f-bc8c-e3ed6349ad38 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F10_771852.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FH TCGA-BH-A1FH-11B TCGA-BH-A1FH-11B-42D-A13N-01 f31b040b-34f7-4c6f-bc8c-e3ed6349ad38 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F10_771852.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FH TCGA-BH-A1FH-11B TCGA-BH-A1FH-11B-42D-A13N-01 f31b040b-34f7-4c6f-bc8c-e3ed6349ad38 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F10_771852.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FH TCGA-BH-A1FH-11B TCGA-BH-A1FH-11B-42D-A13N-01 f31b040b-34f7-4c6f-bc8c-e3ed6349ad38 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F10_771852.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FH TCGA-BH-A1FH-11B TCGA-BH-A1FH-11B-42D-A13N-01 f31b040b-34f7-4c6f-bc8c-e3ed6349ad38 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F10_771852.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FH TCGA-BH-A1FH-11B TCGA-BH-A1FH-11B-42D-A13N-01 f31b040b-34f7-4c6f-bc8c-e3ed6349ad38 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F10_771852.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FH TCGA-BH-A1FH-11B TCGA-BH-A1FH-11B-42D-A13N-01 f31b040b-34f7-4c6f-bc8c-e3ed6349ad38 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F10_771852.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-11B TCGA-BH-A1FH-11B-42D-A13O-09 0eff2896-73b8-4a34-90dd-96351fcb0eb2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-11B TCGA-BH-A1FH-11B-42D-A13T-05 5451cd7e-22f0-4536-96f7-17128fac4bfe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-11B TCGA-BH-A1FH-11B-42D-A13T-05 5451cd7e-22f0-4536-96f7-17128fac4bfe DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818128_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-11B TCGA-BH-A1FH-11B-42D-A13T-05 5451cd7e-22f0-4536-96f7-17128fac4bfe DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818128_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-11B TCGA-BH-A1FH-11B-42D-A13T-05 5451cd7e-22f0-4536-96f7-17128fac4bfe DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-BH-A1FH-11B-42D-A13T-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-11B TCGA-BH-A1FH-11B-42D-A13T-05 5451cd7e-22f0-4536-96f7-17128fac4bfe DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-BH-A1FH-11B-42D-A13T-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-11B TCGA-BH-A1FH-11B-42R-A13P-13 030fea78-6657-4a10-b04c-8231a1781e01 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-11B TCGA-BH-A1FH-11B-42R-A13P-13 030fea78-6657-4a10-b04c-8231a1781e01 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-11B TCGA-BH-A1FH-11B-42R-A13Q-07 1b831e2d-c265-4eac-aee0-248493a14218 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_456854.TCGA-BH-A1FH-11B-42R-A13Q-07.110824_UNC11-SN627_0145_AD0DL7ABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-11B TCGA-BH-A1FH-11B-42R-A13Q-07 1b831e2d-c265-4eac-aee0-248493a14218 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_457103.TCGA-BH-A1FH-11B-42R-A13Q-07.110824_UNC11-SN627_0145_AD0DL7ABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-11B TCGA-BH-A1FH-11B-42R-A13Q-07 1b831e2d-c265-4eac-aee0-248493a14218 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_457233.TCGA-BH-A1FH-11B-42R-A13Q-07.110824_UNC11-SN627_0145_AD0DL7ABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FH TCGA-BH-A1FH-11B TCGA-BH-A1FH-11B-42W-A14R-09 829c0bb2-8ce6-4909-aee7-c56d4a541bb2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FJ TCGA-BH-A1FJ-01A TCGA-BH-A1FJ-01A-11D-A13I-02 48d7e239-7752-4105-ad02-fc5883d8599f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FJ TCGA-BH-A1FJ-01A TCGA-BH-A1FJ-01A-11D-A13J-01 98f36ce5-e678-4356-a0e9-f2daf679f1f1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FJ TCGA-BH-A1FJ-01A TCGA-BH-A1FJ-01A-11D-A13J-01 98f36ce5-e678-4356-a0e9-f2daf679f1f1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E01_771972.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-BH-A1FJ TCGA-BH-A1FJ-01A TCGA-BH-A1FJ-01A-11D-A13J-01 98f36ce5-e678-4356-a0e9-f2daf679f1f1 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_E01_771972.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-BH-A1FJ TCGA-BH-A1FJ-01A TCGA-BH-A1FJ-01A-11D-A13K-05 3e6212d9-f27c-4971-aa4f-e60b68c03ec2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FJ TCGA-BH-A1FJ-01A TCGA-BH-A1FJ-01A-11D-A13K-05 3e6212d9-f27c-4971-aa4f-e60b68c03ec2 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-BH-A1FJ-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-BH-A1FJ TCGA-BH-A1FJ-01A TCGA-BH-A1FJ-01A-11D-A13K-05 3e6212d9-f27c-4971-aa4f-e60b68c03ec2 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-BH-A1FJ-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-BH-A1FJ TCGA-BH-A1FJ-01A TCGA-BH-A1FJ-01A-11D-A13L-09 dc62eafd-b5ad-42b4-9665-11ba6b22cff5 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FL TCGA-BH-A1FL-01A TCGA-BH-A1FL-01A-11D-A13J-01 f4aa579c-fa0c-4313-a4a1-ca88a367d71f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FL TCGA-BH-A1FL-01A TCGA-BH-A1FL-01A-11D-A13J-01 f4aa579c-fa0c-4313-a4a1-ca88a367d71f SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C02_771908.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FL TCGA-BH-A1FL-01A TCGA-BH-A1FL-01A-11D-A13J-01 f4aa579c-fa0c-4313-a4a1-ca88a367d71f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C02_771908.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FL TCGA-BH-A1FL-01A TCGA-BH-A1FL-01A-11D-A13J-01 f4aa579c-fa0c-4313-a4a1-ca88a367d71f SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C02_771908.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FL TCGA-BH-A1FL-01A TCGA-BH-A1FL-01A-11D-A13J-01 f4aa579c-fa0c-4313-a4a1-ca88a367d71f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C02_771908.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-BH-A1FL TCGA-BH-A1FL-01A TCGA-BH-A1FL-01A-11D-A13K-05 421d878b-48a4-4e99-925c-6194fe837bee Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-BH-A1FL-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-BH-A1FL TCGA-BH-A1FL-01A TCGA-BH-A1FL-01A-11D-A13L-09 bb84cbb1-7244-4d92-8977-a37dbafc47b4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FL TCGA-BH-A1FL-01A TCGA-BH-A1FL-01A-11R-A13P-13 4c72e6a1-e1d2-46f3-aea2-d4a2d6cf7054 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FL TCGA-BH-A1FL-01A TCGA-BH-A1FL-01A-11R-A13P-13 4c72e6a1-e1d2-46f3-aea2-d4a2d6cf7054 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1FL-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1FL TCGA-BH-A1FL-01A TCGA-BH-A1FL-01A-11R-A13P-13 4c72e6a1-e1d2-46f3-aea2-d4a2d6cf7054 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FL TCGA-BH-A1FL-11A TCGA-BH-A1FL-11A-13D-A13N-01 fb968681-d2d0-414c-b050-cd91c1112f22 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FL TCGA-BH-A1FL-11A TCGA-BH-A1FL-11A-13D-A13N-01 fb968681-d2d0-414c-b050-cd91c1112f22 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B02_771980.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-BH-A1FL TCGA-BH-A1FL-11A TCGA-BH-A1FL-11A-13D-A13N-01 fb968681-d2d0-414c-b050-cd91c1112f22 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B02_771980.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FL TCGA-BH-A1FL-11A TCGA-BH-A1FL-11A-13D-A13N-01 fb968681-d2d0-414c-b050-cd91c1112f22 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B02_771980.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FL TCGA-BH-A1FL-11A TCGA-BH-A1FL-11A-13D-A13N-01 fb968681-d2d0-414c-b050-cd91c1112f22 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B02_771980.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FL TCGA-BH-A1FL-11A TCGA-BH-A1FL-11A-13D-A13N-01 fb968681-d2d0-414c-b050-cd91c1112f22 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B02_771980.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FL TCGA-BH-A1FL-11A TCGA-BH-A1FL-11A-13D-A13N-01 fb968681-d2d0-414c-b050-cd91c1112f22 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B02_771980.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FL TCGA-BH-A1FL-11A TCGA-BH-A1FL-11A-13D-A13N-01 fb968681-d2d0-414c-b050-cd91c1112f22 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B02_771980.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FL TCGA-BH-A1FL-11A TCGA-BH-A1FL-11A-13D-A13N-01 fb968681-d2d0-414c-b050-cd91c1112f22 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B02_771980.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-BH-A1FL TCGA-BH-A1FL-11A TCGA-BH-A1FL-11A-13D-A13O-09 d669a784-1fb6-417f-b4e6-34486d51f2e0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FL TCGA-BH-A1FL-11A TCGA-BH-A1FL-11A-13W-A14R-09 f602af90-8e01-4c19-8a9c-8eafd60e886b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FM TCGA-BH-A1FM-01A TCGA-BH-A1FM-01A-11D-A13I-02 d3921099-d021-44b4-8992-459dce828737 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FM TCGA-BH-A1FM-01A TCGA-BH-A1FM-01A-11D-A13J-01 c1636423-5fa8-4d4c-bba1-b9dd369e3830 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FM TCGA-BH-A1FM-01A TCGA-BH-A1FM-01A-11D-A13J-01 c1636423-5fa8-4d4c-bba1-b9dd369e3830 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C05_772028.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-BH-A1FM TCGA-BH-A1FM-01A TCGA-BH-A1FM-01A-11D-A13J-01 c1636423-5fa8-4d4c-bba1-b9dd369e3830 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C05_772028.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FM TCGA-BH-A1FM-01A TCGA-BH-A1FM-01A-11D-A13J-01 c1636423-5fa8-4d4c-bba1-b9dd369e3830 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C05_772028.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FM TCGA-BH-A1FM-01A TCGA-BH-A1FM-01A-11D-A13J-01 c1636423-5fa8-4d4c-bba1-b9dd369e3830 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C05_772028.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FM TCGA-BH-A1FM-01A TCGA-BH-A1FM-01A-11D-A13J-01 c1636423-5fa8-4d4c-bba1-b9dd369e3830 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C05_772028.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FM TCGA-BH-A1FM-01A TCGA-BH-A1FM-01A-11D-A13J-01 c1636423-5fa8-4d4c-bba1-b9dd369e3830 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C05_772028.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FM TCGA-BH-A1FM-01A TCGA-BH-A1FM-01A-11D-A13J-01 c1636423-5fa8-4d4c-bba1-b9dd369e3830 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C05_772028.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FM TCGA-BH-A1FM-01A TCGA-BH-A1FM-01A-11D-A13J-01 c1636423-5fa8-4d4c-bba1-b9dd369e3830 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_C05_772028.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-BH-A1FM TCGA-BH-A1FM-01A TCGA-BH-A1FM-01A-11D-A13K-05 c22b8889-8559-4d78-8d2a-2f5d65328a2d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FM TCGA-BH-A1FM-01A TCGA-BH-A1FM-01A-11D-A13K-05 c22b8889-8559-4d78-8d2a-2f5d65328a2d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818139_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1FM TCGA-BH-A1FM-01A TCGA-BH-A1FM-01A-11D-A13K-05 c22b8889-8559-4d78-8d2a-2f5d65328a2d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818139_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1FM TCGA-BH-A1FM-01A TCGA-BH-A1FM-01A-11D-A13K-05 c22b8889-8559-4d78-8d2a-2f5d65328a2d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-BH-A1FM-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-BH-A1FM TCGA-BH-A1FM-01A TCGA-BH-A1FM-01A-11D-A13K-05 c22b8889-8559-4d78-8d2a-2f5d65328a2d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-BH-A1FM-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-BH-A1FM TCGA-BH-A1FM-01A TCGA-BH-A1FM-01A-11D-A13L-09 7cb17736-03da-4f77-8397-145585a25b1e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FM TCGA-BH-A1FM-01A TCGA-BH-A1FM-01A-11R-A13P-13 223b4826-c967-44f2-b1f8-20bdbbdbb00e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FM TCGA-BH-A1FM-01A TCGA-BH-A1FM-01A-11R-A13P-13 223b4826-c967-44f2-b1f8-20bdbbdbb00e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1FM-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1FM TCGA-BH-A1FM-01A TCGA-BH-A1FM-01A-11R-A13P-13 223b4826-c967-44f2-b1f8-20bdbbdbb00e miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_844709.TCGA-BH-A1FM-01A-11R-A13Q-07.110921_UNC9-SN296_0242_AD0DDEABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FM TCGA-BH-A1FM-01A TCGA-BH-A1FM-01A-11R-A13Q-07 99157b66-ae2a-4ba2-8b28-5653803063a9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_844814.TCGA-BH-A1FM-01A-11R-A13Q-07.110921_UNC9-SN296_0242_AD0DDEABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FM TCGA-BH-A1FM-01A TCGA-BH-A1FM-01A-11R-A13Q-07 99157b66-ae2a-4ba2-8b28-5653803063a9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_844968.TCGA-BH-A1FM-01A-11R-A13Q-07.110921_UNC9-SN296_0242_AD0DDEABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FM TCGA-BH-A1FM-01A TCGA-BH-A1FM-01A-11W-A14Q-09 d82ff518-7a62-401a-b927-2f8a7076ff42 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FM TCGA-BH-A1FM-11B TCGA-BH-A1FM-11B-23D-A13M-02 40e153bb-6a3b-4582-8e45-5da17522b916 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FM TCGA-BH-A1FM-11B TCGA-BH-A1FM-11B-23D-A13N-01 9157bb74-a031-40fd-ac30-849f6b7df99f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FM TCGA-BH-A1FM-11B TCGA-BH-A1FM-11B-23D-A13N-01 9157bb74-a031-40fd-ac30-849f6b7df99f SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FN TCGA-BH-A1FN-01A TCGA-BH-A1FN-01A-11D-A13J-01 ce3297a5-e5d6-4abb-a771-4a5d8c4da516 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F02_771894.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-BH-A1FN TCGA-BH-A1FN-01A TCGA-BH-A1FN-01A-11D-A13J-01 ce3297a5-e5d6-4abb-a771-4a5d8c4da516 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F02_771894.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FN TCGA-BH-A1FN-01A TCGA-BH-A1FN-01A-11D-A13J-01 ce3297a5-e5d6-4abb-a771-4a5d8c4da516 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F02_771894.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FN TCGA-BH-A1FN-01A TCGA-BH-A1FN-01A-11D-A13J-01 ce3297a5-e5d6-4abb-a771-4a5d8c4da516 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F02_771894.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FN TCGA-BH-A1FN-01A TCGA-BH-A1FN-01A-11D-A13J-01 ce3297a5-e5d6-4abb-a771-4a5d8c4da516 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F02_771894.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FN TCGA-BH-A1FN-01A TCGA-BH-A1FN-01A-11D-A13J-01 ce3297a5-e5d6-4abb-a771-4a5d8c4da516 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_F02_771894.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-BH-A1FN TCGA-BH-A1FN-01A TCGA-BH-A1FN-01A-11D-A13K-05 83afa4ca-fb91-45a2-a3e1-df3159d69912 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FN TCGA-BH-A1FN-01A TCGA-BH-A1FN-01A-11D-A13K-05 83afa4ca-fb91-45a2-a3e1-df3159d69912 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818108_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1FN TCGA-BH-A1FN-01A TCGA-BH-A1FN-01A-11D-A13K-05 83afa4ca-fb91-45a2-a3e1-df3159d69912 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818108_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1FN TCGA-BH-A1FN-01A TCGA-BH-A1FN-01A-11D-A13K-05 83afa4ca-fb91-45a2-a3e1-df3159d69912 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-BH-A1FN-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-BH-A1FN TCGA-BH-A1FN-01A TCGA-BH-A1FN-01A-11D-A13K-05 83afa4ca-fb91-45a2-a3e1-df3159d69912 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-BH-A1FN-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-BH-A1FN TCGA-BH-A1FN-01A TCGA-BH-A1FN-01A-11D-A13L-09 bf92d76e-31ff-4273-82ea-982c4c26394b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FN TCGA-BH-A1FN-01A TCGA-BH-A1FN-01A-11R-A13P-13 fed1804c-973a-4b14-9676-ed72a77f9731 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FN TCGA-BH-A1FN-01A TCGA-BH-A1FN-01A-11R-A13P-13 fed1804c-973a-4b14-9676-ed72a77f9731 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1FN-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1FN TCGA-BH-A1FN-01A TCGA-BH-A1FN-01A-11R-A13P-13 fed1804c-973a-4b14-9676-ed72a77f9731 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1FN-01A-11R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1FN TCGA-BH-A1FN-01A TCGA-BH-A1FN-01A-11R-A13Q-07 c870e04b-c3b7-495c-8465-7ef2a00fadc7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FN TCGA-BH-A1FN-01A TCGA-BH-A1FN-01A-11R-A13Q-07 c870e04b-c3b7-495c-8465-7ef2a00fadc7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_456437.TCGA-BH-A1FN-01A-11R-A13Q-07.110829_UNC10-SN254_0271_AC00PWABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FN TCGA-BH-A1FN-01A TCGA-BH-A1FN-01A-11R-A13Q-07 c870e04b-c3b7-495c-8465-7ef2a00fadc7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_456578.TCGA-BH-A1FN-01A-11R-A13Q-07.110829_UNC10-SN254_0271_AC00PWABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FN TCGA-BH-A1FN-01A TCGA-BH-A1FN-01A-11R-A13Q-07 c870e04b-c3b7-495c-8465-7ef2a00fadc7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_456643.TCGA-BH-A1FN-01A-11R-A13Q-07.110829_UNC10-SN254_0271_AC00PWABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FN TCGA-BH-A1FN-01A TCGA-BH-A1FN-01A-11W-A14Q-09 3aaa757b-cdb3-463b-82cc-0a77b2ea087f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FN TCGA-BH-A1FN-11A TCGA-BH-A1FN-11A-34D-A13M-02 c75a342d-fc3e-4be0-ba51-2b1205674840 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FN TCGA-BH-A1FN-11A TCGA-BH-A1FN-11A-34D-A13N-01 cd3e8f35-fea1-495c-9a6a-031a404f6072 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FN TCGA-BH-A1FN-11A TCGA-BH-A1FN-11A-34D-A13N-01 cd3e8f35-fea1-495c-9a6a-031a404f6072 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B03_771944.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-BH-A1FN TCGA-BH-A1FN-11A TCGA-BH-A1FN-11A-34D-A13N-01 cd3e8f35-fea1-495c-9a6a-031a404f6072 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B03_771944.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FN TCGA-BH-A1FN-11A TCGA-BH-A1FN-11A-34D-A13N-01 cd3e8f35-fea1-495c-9a6a-031a404f6072 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B03_771944.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FN TCGA-BH-A1FN-11A TCGA-BH-A1FN-11A-34D-A13N-01 cd3e8f35-fea1-495c-9a6a-031a404f6072 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B03_771944.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FN TCGA-BH-A1FN-11A TCGA-BH-A1FN-11A-34D-A13N-01 cd3e8f35-fea1-495c-9a6a-031a404f6072 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B03_771944.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FN TCGA-BH-A1FN-11A TCGA-BH-A1FN-11A-34D-A13N-01 cd3e8f35-fea1-495c-9a6a-031a404f6072 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B03_771944.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FN TCGA-BH-A1FN-11A TCGA-BH-A1FN-11A-34D-A13N-01 cd3e8f35-fea1-495c-9a6a-031a404f6072 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B03_771944.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FN TCGA-BH-A1FN-11A TCGA-BH-A1FN-11A-34D-A13N-01 cd3e8f35-fea1-495c-9a6a-031a404f6072 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B03_771944.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-BH-A1FN TCGA-BH-A1FN-11A TCGA-BH-A1FN-11A-34D-A13O-09 a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FN TCGA-BH-A1FN-11A TCGA-BH-A1FN-11A-34D-A13T-05 cfaf3a49-85b5-4549-86e6-36fea32f1bc8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FN TCGA-BH-A1FN-11A TCGA-BH-A1FN-11A-34D-A13T-05 cfaf3a49-85b5-4549-86e6-36fea32f1bc8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818108_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1FN TCGA-BH-A1FN-11A TCGA-BH-A1FN-11A-34D-A13T-05 cfaf3a49-85b5-4549-86e6-36fea32f1bc8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818108_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1FN TCGA-BH-A1FN-11A TCGA-BH-A1FN-11A-34D-A13T-05 cfaf3a49-85b5-4549-86e6-36fea32f1bc8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-BH-A1FN-11A-34D-A13T-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-BH-A1FN TCGA-BH-A1FN-11A TCGA-BH-A1FN-11A-34D-A13T-05 cfaf3a49-85b5-4549-86e6-36fea32f1bc8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-BH-A1FN-11A-34D-A13T-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-BH-A1FN TCGA-BH-A1FN-11A TCGA-BH-A1FN-11A-34R-A13P-13 79e8e95c-3ea8-4f14-b2f1-cb23842578d9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FN TCGA-BH-A1FN-11A TCGA-BH-A1FN-11A-34R-A13P-13 79e8e95c-3ea8-4f14-b2f1-cb23842578d9 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FR TCGA-BH-A1FR-01A TCGA-BH-A1FR-01A-11D-A13I-02 fb2d38fc-8ef9-4608-94f4-abdb678a24de Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FR TCGA-BH-A1FR-01A TCGA-BH-A1FR-01A-11D-A13J-01 8e5ce7fa-08f9-4610-bb85-dd59c335ebbd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FR TCGA-BH-A1FR-01A TCGA-BH-A1FR-01A-11D-A13J-01 8e5ce7fa-08f9-4610-bb85-dd59c335ebbd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D10_772000.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-BH-A1FR TCGA-BH-A1FR-01A TCGA-BH-A1FR-01A-11D-A13J-01 8e5ce7fa-08f9-4610-bb85-dd59c335ebbd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D10_772000.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FR TCGA-BH-A1FR-01A TCGA-BH-A1FR-01A-11D-A13J-01 8e5ce7fa-08f9-4610-bb85-dd59c335ebbd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D10_772000.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FR TCGA-BH-A1FR-01A TCGA-BH-A1FR-01A-11D-A13J-01 8e5ce7fa-08f9-4610-bb85-dd59c335ebbd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D10_772000.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FR TCGA-BH-A1FR-01A TCGA-BH-A1FR-01A-11D-A13J-01 8e5ce7fa-08f9-4610-bb85-dd59c335ebbd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D10_772000.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FR TCGA-BH-A1FR-01A TCGA-BH-A1FR-01A-11D-A13J-01 8e5ce7fa-08f9-4610-bb85-dd59c335ebbd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D10_772000.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FR TCGA-BH-A1FR-01A TCGA-BH-A1FR-01A-11D-A13J-01 8e5ce7fa-08f9-4610-bb85-dd59c335ebbd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D10_772000.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FR TCGA-BH-A1FR-01A TCGA-BH-A1FR-01A-11D-A13J-01 8e5ce7fa-08f9-4610-bb85-dd59c335ebbd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_D10_772000.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-BH-A1FR TCGA-BH-A1FR-01A TCGA-BH-A1FR-01A-11D-A13K-05 5c28e996-1941-4fb6-9656-14944db88db1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FR TCGA-BH-A1FR-01A TCGA-BH-A1FR-01A-11D-A13K-05 5c28e996-1941-4fb6-9656-14944db88db1 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818144_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1FR TCGA-BH-A1FR-01A TCGA-BH-A1FR-01A-11D-A13K-05 5c28e996-1941-4fb6-9656-14944db88db1 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818144_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-BH-A1FR TCGA-BH-A1FR-01A TCGA-BH-A1FR-01A-11D-A13K-05 5c28e996-1941-4fb6-9656-14944db88db1 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-BH-A1FR-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-BH-A1FR TCGA-BH-A1FR-01A TCGA-BH-A1FR-01A-11D-A13K-05 5c28e996-1941-4fb6-9656-14944db88db1 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-BH-A1FR-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-BH-A1FR TCGA-BH-A1FR-01A TCGA-BH-A1FR-01A-11D-A13L-09 a589f5ac-105c-45d6-96e1-55e3080f999c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FR TCGA-BH-A1FR-01A TCGA-BH-A1FR-01A-11R-A13P-13 d5b3a95c-de89-4637-83b3-e3d8173d1033 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FR TCGA-BH-A1FR-01A TCGA-BH-A1FR-01A-11R-A13P-13 d5b3a95c-de89-4637-83b3-e3d8173d1033 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1FR-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1FR TCGA-BH-A1FR-01A TCGA-BH-A1FR-01A-11R-A13P-13 d5b3a95c-de89-4637-83b3-e3d8173d1033 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1FR-01A-11R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1FR TCGA-BH-A1FR-01A TCGA-BH-A1FR-01A-11R-A13Q-07 56d5aac4-62b4-43e4-b0e4-f40b19a5893f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FR TCGA-BH-A1FR-01A TCGA-BH-A1FR-01A-11W-A14Q-09 bb995b77-dc9c-4cc3-8bea-e9c401c63cb4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FR TCGA-BH-A1FR-11B TCGA-BH-A1FR-11B-42D-A13M-02 f00e1b25-b1d2-49c4-9be9-07e56037b1b5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FR TCGA-BH-A1FR-11B TCGA-BH-A1FR-11B-42D-A13N-01 4e1477eb-2acf-46e4-8cb2-18f7767b5125 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FR TCGA-BH-A1FR-11B TCGA-BH-A1FR-11B-42D-A13N-01 4e1477eb-2acf-46e4-8cb2-18f7767b5125 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B08_771964.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-BH-A1FR TCGA-BH-A1FR-11B TCGA-BH-A1FR-11B-42D-A13N-01 4e1477eb-2acf-46e4-8cb2-18f7767b5125 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/RANDS_p_TCGA_b109_SNP_1N_GenomeWideSNP_6_B08_771964.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-BH-A1FR TCGA-BH-A1FR-11B TCGA-BH-A1FR-11B-42D-A13N-01 4e1477eb-2acf-46e4-8cb2-18f7767b5125 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FR.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-BH-A1FR TCGA-BH-A1FR-11B TCGA-BH-A1FR-11B-42R-A13P-13 74a4653a-0b8a-47d8-963a-186e58c3a51e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1FR-11B-42R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1FR TCGA-BH-A1FR-11B TCGA-BH-A1FR-11B-42R-A13P-13 74a4653a-0b8a-47d8-963a-186e58c3a51e miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_456448.TCGA-BH-A1FR-11B-42R-A13Q-07.110829_UNC10-SN254_0271_AC00PWABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FR TCGA-BH-A1FR-11B TCGA-BH-A1FR-11B-42R-A13Q-07 c2db17b1-c288-4f73-8e22-22929d846678 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_456582.TCGA-BH-A1FR-11B-42R-A13Q-07.110829_UNC10-SN254_0271_AC00PWABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FR TCGA-BH-A1FR-11B TCGA-BH-A1FR-11B-42R-A13Q-07 c2db17b1-c288-4f73-8e22-22929d846678 RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-BH-A1FU TCGA-BH-A1FU-01A TCGA-BH-A1FU-01A-11D-A14F-01 7a83fa45-d75d-40c9-a35a-2f6b5e1e70ee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-BH-A1FU TCGA-BH-A1FU-01A TCGA-BH-A1FU-01A-11D-A14F-01 7a83fa45-d75d-40c9-a35a-2f6b5e1e70ee SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-BH-A1FU TCGA-BH-A1FU-01A TCGA-BH-A1FU-01A-11D-A14H-05 c70c9907-17bc-4f0e-8504-75cea41b77e7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-BH-A1FU TCGA-BH-A1FU-01A TCGA-BH-A1FU-01A-11D-A14H-05 c70c9907-17bc-4f0e-8504-75cea41b77e7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0/6057833057_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0 120 07-NOV-11 04.10.35.826000000 PM TCGA-BH-A1FU TCGA-BH-A1FU-01A TCGA-BH-A1FU-01A-11D-A14H-05 c70c9907-17bc-4f0e-8504-75cea41b77e7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0/6057833057_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0 120 07-NOV-11 04.10.35.826000000 PM TCGA-BH-A1FU TCGA-BH-A1FU-01A TCGA-BH-A1FU-01A-11D-A14H-05 c70c9907-17bc-4f0e-8504-75cea41b77e7 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-BH-A1FU TCGA-BH-A1FU-01A TCGA-BH-A1FU-01A-11R-A14C-13 f1ba6d80-b4c9-414a-b3df-a68a5ff2092d miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1FU-01A-11R-A14C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 120 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1FU TCGA-BH-A1FU-01A TCGA-BH-A1FU-01A-11R-A14C-13 f1ba6d80-b4c9-414a-b3df-a68a5ff2092d miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-BH-A1FU TCGA-BH-A1FU-11A TCGA-BH-A1FU-11A-23D-A14F-01 77b11f3f-f91f-429d-a3be-2853f048592c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-BH-A1FU TCGA-BH-A1FU-11A TCGA-BH-A1FU-11A-23D-A14F-01 77b11f3f-f91f-429d-a3be-2853f048592c SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-BH-A1FU TCGA-BH-A1FU-11A TCGA-BH-A1FU-11A-23R-A14C-13 493181ed-2b03-41cb-ab90-b3c08e7287c2 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A1FU-11A-23R-A14C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 120 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A1FU TCGA-BH-A1FU-11A TCGA-BH-A1FU-11A-23R-A14C-13 493181ed-2b03-41cb-ab90-b3c08e7287c2 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_431770.TCGA-BH-A1FU-11A-23R-A14D-07.110805_UNC11-SN627_0135_BD0DKJABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 120 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FU TCGA-BH-A1FU-11A TCGA-BH-A1FU-11A-23R-A14D-07 df661ba2-098b-49e0-884c-27cf2ecd87f2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_431881.TCGA-BH-A1FU-11A-23R-A14D-07.110805_UNC11-SN627_0135_BD0DKJABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 120 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FU TCGA-BH-A1FU-11A TCGA-BH-A1FU-11A-23R-A14D-07 df661ba2-098b-49e0-884c-27cf2ecd87f2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_432034.TCGA-BH-A1FU-11A-23R-A14D-07.110805_UNC11-SN627_0135_BD0DKJABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 120 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A1FU TCGA-BH-A1FU-11A TCGA-BH-A1FU-11A-23W-A16H-09 6767d9ad-4efc-4f17-b129-a9aebee95769 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-BH-A1FU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-BH-A201 TCGA-BH-A201-01A TCGA-BH-A201-01A-11D-A14I-02 04535564-8d05-46cb-9766-d893cfde001f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-BH-A201.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-BH-A201 TCGA-BH-A201-01A TCGA-BH-A201-01A-11D-A14J-01 f4e002a0-1f2f-4ffd-bff9-8020c931d51b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-BH-A201.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-BH-A201 TCGA-BH-A201-01A TCGA-BH-A201-01A-11D-A14J-01 f4e002a0-1f2f-4ffd-bff9-8020c931d51b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_E03_780918.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0 124 07-DEC-11 11.20.29.794000000 AM TCGA-BH-A201 TCGA-BH-A201-01A TCGA-BH-A201-01A-11D-A14J-01 f4e002a0-1f2f-4ffd-bff9-8020c931d51b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_E03_780918.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-BH-A201 TCGA-BH-A201-01A TCGA-BH-A201-01A-11D-A14J-01 f4e002a0-1f2f-4ffd-bff9-8020c931d51b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_E03_780918.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-BH-A201 TCGA-BH-A201-01A TCGA-BH-A201-01A-11D-A14J-01 f4e002a0-1f2f-4ffd-bff9-8020c931d51b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_E03_780918.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-BH-A201 TCGA-BH-A201-01A TCGA-BH-A201-01A-11D-A14J-01 f4e002a0-1f2f-4ffd-bff9-8020c931d51b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_E03_780918.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-BH-A201 TCGA-BH-A201-01A TCGA-BH-A201-01A-11D-A14J-01 f4e002a0-1f2f-4ffd-bff9-8020c931d51b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_E03_780918.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-BH-A201 TCGA-BH-A201-01A TCGA-BH-A201-01A-11D-A14J-01 f4e002a0-1f2f-4ffd-bff9-8020c931d51b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_E03_780918.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-BH-A201 TCGA-BH-A201-01A TCGA-BH-A201-01A-11D-A14J-01 f4e002a0-1f2f-4ffd-bff9-8020c931d51b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_E03_780918.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0 124 07-DEC-11 01.00.01.995000000 PM TCGA-BH-A201 TCGA-BH-A201-01A TCGA-BH-A201-01A-11D-A14K-09 df6e619f-67a5-49f3-9768-4826aa2c9d1b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-BH-A201.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-BH-A201 TCGA-BH-A201-01A TCGA-BH-A201-01A-11D-A14N-05 7b384021-0cc7-4e32-83bc-a56c1cdda61f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-BH-A201.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-BH-A201 TCGA-BH-A201-01A TCGA-BH-A201-01A-11D-A14N-05 7b384021-0cc7-4e32-83bc-a56c1cdda61f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.12.1.0/6042316072_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.12.1.0 124 07-NOV-11 04.11.38.706000000 PM TCGA-BH-A201 TCGA-BH-A201-01A TCGA-BH-A201-01A-11D-A14N-05 7b384021-0cc7-4e32-83bc-a56c1cdda61f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.12.1.0/6042316072_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.12.1.0 124 07-NOV-11 04.11.38.706000000 PM TCGA-BH-A201 TCGA-BH-A201-01A TCGA-BH-A201-01A-11D-A14N-05 7b384021-0cc7-4e32-83bc-a56c1cdda61f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.12.1.0/jhu-usc.edu_BRCA.HumanMethylation450.12.lvl-2.TCGA-BH-A201-01A-11D-A14N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.12.1.0 124 07-NOV-11 04.55.54.995000000 PM TCGA-BH-A201 TCGA-BH-A201-01A TCGA-BH-A201-01A-11D-A14N-05 7b384021-0cc7-4e32-83bc-a56c1cdda61f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.12.1.0/jhu-usc.edu_BRCA.HumanMethylation450.12.lvl-3.TCGA-BH-A201-01A-11D-A14N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.12.1.0 124 07-NOV-11 05.36.33.757000000 PM TCGA-BH-A201 TCGA-BH-A201-01A TCGA-BH-A201-01A-11R-A14L-13 b5b716d6-6b3d-4df7-9f85-8671b703e875 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-BH-A201.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-BH-A201 TCGA-BH-A201-01A TCGA-BH-A201-01A-11R-A14L-13 b5b716d6-6b3d-4df7-9f85-8671b703e875 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A201-01A-11R-A14L-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 124 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A201 TCGA-BH-A201-01A TCGA-BH-A201-01A-11R-A14L-13 b5b716d6-6b3d-4df7-9f85-8671b703e875 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A201-01A-11R-A14L-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 124 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A201 TCGA-BH-A201-01A TCGA-BH-A201-01A-11R-A14M-07 a7050752-eefd-4576-a304-c79dc6fa30e7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-BH-A201.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-BH-A201 TCGA-BH-A201-01A TCGA-BH-A201-01A-11R-A14M-07 a7050752-eefd-4576-a304-c79dc6fa30e7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_573965.TCGA-BH-A201-01A-11R-A14M-07.110921_UNC16-SN851_0090_BB060BABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 124 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A201 TCGA-BH-A201-01A TCGA-BH-A201-01A-11R-A14M-07 a7050752-eefd-4576-a304-c79dc6fa30e7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_573992.TCGA-BH-A201-01A-11R-A14M-07.110921_UNC16-SN851_0090_BB060BABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 124 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A201 TCGA-BH-A201-01A TCGA-BH-A201-01A-11R-A14M-07 a7050752-eefd-4576-a304-c79dc6fa30e7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_574000.TCGA-BH-A201-01A-11R-A14M-07.110921_UNC16-SN851_0090_BB060BABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 124 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A201 TCGA-BH-A201-01A TCGA-BH-A201-01A-11W-A16I-09 9f436d06-3483-4c2a-ba9b-a389300adf64 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-BH-A201.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-BH-A201 TCGA-BH-A201-10A TCGA-BH-A201-10A-01D-A14I-02 e28743b4-2518-4d5f-8758-be63acbf1d90 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-BH-A201.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-BH-A201 TCGA-BH-A201-10A TCGA-BH-A201-10A-01D-A14J-01 23522a5d-f514-421c-b038-8f28bccab48e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-BH-A201.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-BH-A201 TCGA-BH-A201-10A TCGA-BH-A201-10A-01D-A14J-01 23522a5d-f514-421c-b038-8f28bccab48e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A07_780914.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0 124 07-DEC-11 11.20.29.794000000 AM TCGA-BH-A201 TCGA-BH-A201-10A TCGA-BH-A201-10A-01D-A14J-01 23522a5d-f514-421c-b038-8f28bccab48e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A07_780914.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-BH-A201 TCGA-BH-A201-10A TCGA-BH-A201-10A-01D-A14J-01 23522a5d-f514-421c-b038-8f28bccab48e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A07_780914.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-BH-A201 TCGA-BH-A201-10A TCGA-BH-A201-10A-01D-A14J-01 23522a5d-f514-421c-b038-8f28bccab48e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A07_780914.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-BH-A201 TCGA-BH-A201-10A TCGA-BH-A201-10A-01D-A14J-01 23522a5d-f514-421c-b038-8f28bccab48e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A07_780914.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-BH-A201 TCGA-BH-A201-10A TCGA-BH-A201-10A-01D-A14J-01 23522a5d-f514-421c-b038-8f28bccab48e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A07_780914.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-BH-A201 TCGA-BH-A201-10A TCGA-BH-A201-10A-01D-A14J-01 23522a5d-f514-421c-b038-8f28bccab48e SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-BH-A201.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-BH-A201 TCGA-BH-A201-10A TCGA-BH-A201-10A-01W-A16I-09 0ad0b0a4-3915-4238-ae01-34fb45cc13af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-BH-A201.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-BH-A202 TCGA-BH-A202-01A TCGA-BH-A202-01A-11D-A14I-02 9e0cf516-e512-4c28-8737-30d3a25d912a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-BH-A202.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-BH-A202 TCGA-BH-A202-01A TCGA-BH-A202-01A-11D-A14J-01 6a4af154-27d5-4a5d-9d88-1f4db2dc70d8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-BH-A202.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-BH-A202 TCGA-BH-A202-01A TCGA-BH-A202-01A-11D-A14J-01 6a4af154-27d5-4a5d-9d88-1f4db2dc70d8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_F10_780774.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0 124 07-DEC-11 11.20.29.794000000 AM TCGA-BH-A202 TCGA-BH-A202-01A TCGA-BH-A202-01A-11D-A14J-01 6a4af154-27d5-4a5d-9d88-1f4db2dc70d8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_F10_780774.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-BH-A202 TCGA-BH-A202-01A TCGA-BH-A202-01A-11D-A14J-01 6a4af154-27d5-4a5d-9d88-1f4db2dc70d8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_F10_780774.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-BH-A202 TCGA-BH-A202-01A TCGA-BH-A202-01A-11D-A14J-01 6a4af154-27d5-4a5d-9d88-1f4db2dc70d8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_F10_780774.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-BH-A202 TCGA-BH-A202-01A TCGA-BH-A202-01A-11D-A14J-01 6a4af154-27d5-4a5d-9d88-1f4db2dc70d8 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_F10_780774.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-BH-A202 TCGA-BH-A202-01A TCGA-BH-A202-01A-11D-A14J-01 6a4af154-27d5-4a5d-9d88-1f4db2dc70d8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_F10_780774.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0 124 07-DEC-11 01.00.01.995000000 PM TCGA-BH-A202 TCGA-BH-A202-01A TCGA-BH-A202-01A-11D-A14K-09 e6feb69a-8827-4d43-94aa-036cf5150549 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-BH-A202.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-BH-A202 TCGA-BH-A202-01A TCGA-BH-A202-01A-11D-A14N-05 9ff86e76-0905-41f6-b7e3-3f2a611b6748 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-BH-A202.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-BH-A202 TCGA-BH-A202-01A TCGA-BH-A202-01A-11D-A14N-05 9ff86e76-0905-41f6-b7e3-3f2a611b6748 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.12.1.0/jhu-usc.edu_BRCA.HumanMethylation450.12.lvl-2.TCGA-BH-A202-01A-11D-A14N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.12.1.0 124 07-NOV-11 04.55.54.995000000 PM TCGA-BH-A202 TCGA-BH-A202-01A TCGA-BH-A202-01A-11D-A14N-05 9ff86e76-0905-41f6-b7e3-3f2a611b6748 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.12.1.0/jhu-usc.edu_BRCA.HumanMethylation450.12.lvl-3.TCGA-BH-A202-01A-11D-A14N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.12.1.0 124 07-NOV-11 05.36.33.757000000 PM TCGA-BH-A202 TCGA-BH-A202-01A TCGA-BH-A202-01A-11R-A14L-13 c30e3ca5-c05a-41b3-8cee-f11ac8f53991 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-BH-A202.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-BH-A202 TCGA-BH-A202-01A TCGA-BH-A202-01A-11R-A14L-13 c30e3ca5-c05a-41b3-8cee-f11ac8f53991 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A202-01A-11R-A14L-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 124 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A202 TCGA-BH-A202-01A TCGA-BH-A202-01A-11R-A14L-13 c30e3ca5-c05a-41b3-8cee-f11ac8f53991 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_574097.TCGA-BH-A202-01A-11R-A14M-07.110921_UNC16-SN851_0090_BB060BABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 124 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A202 TCGA-BH-A202-01A TCGA-BH-A202-01A-11R-A14M-07 d3169d74-dd69-4c6b-8232-6e15ac2920b9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_574147.TCGA-BH-A202-01A-11R-A14M-07.110921_UNC16-SN851_0090_BB060BABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 124 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A202 TCGA-BH-A202-01A TCGA-BH-A202-01A-11R-A14M-07 d3169d74-dd69-4c6b-8232-6e15ac2920b9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_574216.TCGA-BH-A202-01A-11R-A14M-07.110921_UNC16-SN851_0090_BB060BABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 124 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A202 TCGA-BH-A202-01A TCGA-BH-A202-01A-11W-A16I-09 fc289d1c-dd22-4ff6-b455-4a208b0e16b5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-BH-A202.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-BH-A202 TCGA-BH-A202-10A TCGA-BH-A202-10A-01D-A14I-02 c10355b5-da1b-49cf-9d13-eccf27c79057 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-BH-A202.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-BH-A202 TCGA-BH-A202-10A TCGA-BH-A202-10A-01D-A14J-01 dc0a105b-ccc4-4221-a470-157b41ed0ed2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-BH-A202.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-BH-A202 TCGA-BH-A202-10A TCGA-BH-A202-10A-01D-A14J-01 dc0a105b-ccc4-4221-a470-157b41ed0ed2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C09_780832.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0 124 07-DEC-11 11.20.29.794000000 AM TCGA-BH-A202 TCGA-BH-A202-10A TCGA-BH-A202-10A-01D-A14J-01 dc0a105b-ccc4-4221-a470-157b41ed0ed2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C09_780832.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-BH-A202 TCGA-BH-A202-10A TCGA-BH-A202-10A-01D-A14J-01 dc0a105b-ccc4-4221-a470-157b41ed0ed2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C09_780832.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-BH-A202 TCGA-BH-A202-10A TCGA-BH-A202-10A-01D-A14J-01 dc0a105b-ccc4-4221-a470-157b41ed0ed2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C09_780832.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-BH-A202 TCGA-BH-A202-10A TCGA-BH-A202-10A-01D-A14J-01 dc0a105b-ccc4-4221-a470-157b41ed0ed2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C09_780832.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-BH-A202 TCGA-BH-A202-10A TCGA-BH-A202-10A-01D-A14J-01 dc0a105b-ccc4-4221-a470-157b41ed0ed2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C09_780832.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-BH-A202 TCGA-BH-A202-10A TCGA-BH-A202-10A-01D-A14J-01 dc0a105b-ccc4-4221-a470-157b41ed0ed2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C09_780832.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-BH-A202 TCGA-BH-A202-10A TCGA-BH-A202-10A-01D-A14J-01 dc0a105b-ccc4-4221-a470-157b41ed0ed2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C09_780832.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0 124 07-DEC-11 01.00.01.995000000 PM TCGA-BH-A202 TCGA-BH-A202-10A TCGA-BH-A202-10A-01D-A14K-09 4cdd2f93-e0d1-4420-bf4d-ba004cc0599c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-BH-A202.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-BH-A202 TCGA-BH-A202-10A TCGA-BH-A202-10A-01W-A16I-09 c7ea396d-4c70-4aea-a093-fffa655ce460 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-BH-A202.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-BH-A203 TCGA-BH-A203-01A TCGA-BH-A203-01A-12D-A165-02 926fcbdd-b102-48d2-b1f3-f8d7964e2642 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-BH-A203.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-BH-A203 TCGA-BH-A203-01A TCGA-BH-A203-01A-12D-A166-01 ee9ecf8c-e528-40b6-a196-eb1f2689a397 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-BH-A203.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-BH-A203 TCGA-BH-A203-01A TCGA-BH-A203-01A-12D-A166-01 ee9ecf8c-e528-40b6-a196-eb1f2689a397 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A01_802484.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-BH-A203 TCGA-BH-A203-01A TCGA-BH-A203-01A-12D-A166-01 ee9ecf8c-e528-40b6-a196-eb1f2689a397 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A01_802484.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-BH-A203 TCGA-BH-A203-01A TCGA-BH-A203-01A-12D-A166-01 ee9ecf8c-e528-40b6-a196-eb1f2689a397 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A01_802484.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-BH-A203 TCGA-BH-A203-01A TCGA-BH-A203-01A-12D-A166-01 ee9ecf8c-e528-40b6-a196-eb1f2689a397 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A01_802484.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-BH-A203 TCGA-BH-A203-01A TCGA-BH-A203-01A-12D-A166-01 ee9ecf8c-e528-40b6-a196-eb1f2689a397 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A01_802484.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-BH-A203 TCGA-BH-A203-01A TCGA-BH-A203-01A-12D-A166-01 ee9ecf8c-e528-40b6-a196-eb1f2689a397 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A01_802484.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-BH-A203 TCGA-BH-A203-01A TCGA-BH-A203-01A-12D-A166-01 ee9ecf8c-e528-40b6-a196-eb1f2689a397 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A01_802484.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-BH-A203 TCGA-BH-A203-01A TCGA-BH-A203-01A-12D-A166-01 ee9ecf8c-e528-40b6-a196-eb1f2689a397 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A01_802484.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-BH-A203 TCGA-BH-A203-01A TCGA-BH-A203-01A-12D-A167-09 128b9209-2201-428c-87e7-65690bfe3875 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-BH-A203.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-BH-A203 TCGA-BH-A203-01A TCGA-BH-A203-01A-12D-A16A-05 7e5ca605-dec1-493a-b8c0-6aa050193024 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-BH-A203.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-BH-A203 TCGA-BH-A203-01A TCGA-BH-A203-01A-12D-A16A-05 7e5ca605-dec1-493a-b8c0-6aa050193024 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833155_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-BH-A203 TCGA-BH-A203-01A TCGA-BH-A203-01A-12D-A16A-05 7e5ca605-dec1-493a-b8c0-6aa050193024 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833155_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-BH-A203 TCGA-BH-A203-01A TCGA-BH-A203-01A-12D-A16A-05 7e5ca605-dec1-493a-b8c0-6aa050193024 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-2.TCGA-BH-A203-01A-12D-A16A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0 142 07-NOV-11 04.58.21.556000000 PM TCGA-BH-A203 TCGA-BH-A203-01A TCGA-BH-A203-01A-12D-A16A-05 7e5ca605-dec1-493a-b8c0-6aa050193024 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-3.TCGA-BH-A203-01A-12D-A16A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0 142 07-NOV-11 06.37.11.245000000 PM TCGA-BH-A203 TCGA-BH-A203-01A TCGA-BH-A203-01A-12R-A168-13 e7e46abb-b7f9-461e-b917-af309ca7d4e6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-BH-A203.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-BH-A203 TCGA-BH-A203-01A TCGA-BH-A203-01A-12R-A168-13 e7e46abb-b7f9-461e-b917-af309ca7d4e6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A203-01A-12R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A203 TCGA-BH-A203-01A TCGA-BH-A203-01A-12R-A168-13 e7e46abb-b7f9-461e-b917-af309ca7d4e6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A203-01A-12R-A168-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A203 TCGA-BH-A203-01A TCGA-BH-A203-01A-12R-A169-07 ff6fb75e-aefc-44e3-accd-c4f690a51cca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-BH-A203.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-BH-A203 TCGA-BH-A203-01A TCGA-BH-A203-01A-12R-A169-07 ff6fb75e-aefc-44e3-accd-c4f690a51cca RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_844515.TCGA-BH-A203-01A-12R-A169-07.110921_UNC9-SN296_0243_BC010LABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A203 TCGA-BH-A203-01A TCGA-BH-A203-01A-12R-A169-07 ff6fb75e-aefc-44e3-accd-c4f690a51cca RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_844520.TCGA-BH-A203-01A-12R-A169-07.110921_UNC9-SN296_0243_BC010LABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A203 TCGA-BH-A203-01A TCGA-BH-A203-01A-12R-A169-07 ff6fb75e-aefc-44e3-accd-c4f690a51cca RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_844601.TCGA-BH-A203-01A-12R-A169-07.110921_UNC9-SN296_0243_BC010LABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A203 TCGA-BH-A203-01A TCGA-BH-A203-01A-12W-A184-09 d5b6da07-281e-4cf2-952e-b25a845dfe96 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-BH-A203.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-BH-A203 TCGA-BH-A203-11A TCGA-BH-A203-11A-42D-A165-02 b6565863-d58b-4ad0-91eb-435c138c86c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-BH-A203.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-BH-A203 TCGA-BH-A203-11A TCGA-BH-A203-11A-42D-A166-01 f8ac1329-3c3a-4ead-95be-e5bb0e255dfb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-BH-A203.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-BH-A203 TCGA-BH-A203-11A TCGA-BH-A203-11A-42D-A166-01 f8ac1329-3c3a-4ead-95be-e5bb0e255dfb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D07_802408.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-BH-A203 TCGA-BH-A203-11A TCGA-BH-A203-11A-42D-A166-01 f8ac1329-3c3a-4ead-95be-e5bb0e255dfb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D07_802408.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-BH-A203 TCGA-BH-A203-11A TCGA-BH-A203-11A-42D-A166-01 f8ac1329-3c3a-4ead-95be-e5bb0e255dfb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D07_802408.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-BH-A203 TCGA-BH-A203-11A TCGA-BH-A203-11A-42D-A166-01 f8ac1329-3c3a-4ead-95be-e5bb0e255dfb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D07_802408.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-BH-A203 TCGA-BH-A203-11A TCGA-BH-A203-11A-42D-A166-01 f8ac1329-3c3a-4ead-95be-e5bb0e255dfb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D07_802408.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-BH-A203 TCGA-BH-A203-11A TCGA-BH-A203-11A-42D-A166-01 f8ac1329-3c3a-4ead-95be-e5bb0e255dfb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D07_802408.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-BH-A203 TCGA-BH-A203-11A TCGA-BH-A203-11A-42D-A166-01 f8ac1329-3c3a-4ead-95be-e5bb0e255dfb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D07_802408.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-BH-A203 TCGA-BH-A203-11A TCGA-BH-A203-11A-42D-A166-01 f8ac1329-3c3a-4ead-95be-e5bb0e255dfb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D07_802408.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-BH-A203 TCGA-BH-A203-11A TCGA-BH-A203-11A-42D-A167-09 b62e3943-6354-4309-881b-3f1f10ecb1fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-BH-A203.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-BH-A203 TCGA-BH-A203-11A TCGA-BH-A203-11A-42D-A16A-05 b3454df9-8202-458c-ab8c-ad7f94fe8fc8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-BH-A203.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-BH-A203 TCGA-BH-A203-11A TCGA-BH-A203-11A-42D-A16A-05 b3454df9-8202-458c-ab8c-ad7f94fe8fc8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833134_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-BH-A203 TCGA-BH-A203-11A TCGA-BH-A203-11A-42D-A16A-05 b3454df9-8202-458c-ab8c-ad7f94fe8fc8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833134_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-BH-A203 TCGA-BH-A203-11A TCGA-BH-A203-11A-42D-A16A-05 b3454df9-8202-458c-ab8c-ad7f94fe8fc8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-2.TCGA-BH-A203-11A-42D-A16A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0 142 07-NOV-11 04.58.21.556000000 PM TCGA-BH-A203 TCGA-BH-A203-11A TCGA-BH-A203-11A-42D-A16A-05 b3454df9-8202-458c-ab8c-ad7f94fe8fc8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-3.TCGA-BH-A203-11A-42D-A16A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0 142 07-NOV-11 06.37.11.245000000 PM TCGA-BH-A203 TCGA-BH-A203-11A TCGA-BH-A203-11A-42R-A168-13 e262e1bd-37b7-4ed4-9581-1adc48c668b1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-BH-A203.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-BH-A203 TCGA-BH-A203-11A TCGA-BH-A203-11A-42R-A168-13 e262e1bd-37b7-4ed4-9581-1adc48c668b1 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A203-11A-42R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A203 TCGA-BH-A203-11A TCGA-BH-A203-11A-42R-A168-13 e262e1bd-37b7-4ed4-9581-1adc48c668b1 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A203-11A-42R-A168-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A203 TCGA-BH-A203-11A TCGA-BH-A203-11A-42R-A169-07 6e5015d8-55e8-448a-9663-7b8625f170ae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-BH-A203.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-BH-A203 TCGA-BH-A203-11A TCGA-BH-A203-11A-42R-A169-07 6e5015d8-55e8-448a-9663-7b8625f170ae RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_843838.TCGA-BH-A203-11A-42R-A169-07.110921_UNC9-SN296_0243_BC010LABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A203 TCGA-BH-A203-11A TCGA-BH-A203-11A-42R-A169-07 6e5015d8-55e8-448a-9663-7b8625f170ae RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_843860.TCGA-BH-A203-11A-42R-A169-07.110921_UNC9-SN296_0243_BC010LABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A203 TCGA-BH-A203-11A TCGA-BH-A203-11A-42R-A169-07 6e5015d8-55e8-448a-9663-7b8625f170ae RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_843892.TCGA-BH-A203-11A-42R-A169-07.110921_UNC9-SN296_0243_BC010LABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A203 TCGA-BH-A203-11A TCGA-BH-A203-11A-42W-A184-09 63912edb-0cd0-4b59-b2ec-d03c96d4679a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-BH-A203.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-BH-A204 TCGA-BH-A204-01A TCGA-BH-A204-01A-11D-A158-02 91f71972-def9-40e9-a7bc-70f7120de220 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A204.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A204 TCGA-BH-A204-01A TCGA-BH-A204-01A-11D-A159-09 2454d30f-1ca5-4f01-bfce-6ae10e84e75a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A204.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A204 TCGA-BH-A204-01A TCGA-BH-A204-01A-11D-A160-01 88bb74ad-b634-48d4-a342-83850d37069a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A204.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A204 TCGA-BH-A204-01A TCGA-BH-A204-01A-11D-A160-01 88bb74ad-b634-48d4-a342-83850d37069a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D05_787476.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-BH-A204 TCGA-BH-A204-01A TCGA-BH-A204-01A-11D-A160-01 88bb74ad-b634-48d4-a342-83850d37069a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D05_787476.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-BH-A204 TCGA-BH-A204-01A TCGA-BH-A204-01A-11D-A160-01 88bb74ad-b634-48d4-a342-83850d37069a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D05_787476.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-BH-A204 TCGA-BH-A204-01A TCGA-BH-A204-01A-11D-A160-01 88bb74ad-b634-48d4-a342-83850d37069a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D05_787476.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-BH-A204 TCGA-BH-A204-01A TCGA-BH-A204-01A-11D-A160-01 88bb74ad-b634-48d4-a342-83850d37069a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D05_787476.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-BH-A204 TCGA-BH-A204-01A TCGA-BH-A204-01A-11D-A160-01 88bb74ad-b634-48d4-a342-83850d37069a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D05_787476.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-BH-A204 TCGA-BH-A204-01A TCGA-BH-A204-01A-11D-A160-01 88bb74ad-b634-48d4-a342-83850d37069a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D05_787476.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-BH-A204 TCGA-BH-A204-01A TCGA-BH-A204-01A-11D-A160-01 88bb74ad-b634-48d4-a342-83850d37069a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D05_787476.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0 136 07-DEC-11 01.00.02.682000000 PM TCGA-BH-A204 TCGA-BH-A204-01A TCGA-BH-A204-01A-11D-A161-05 a1ae7ce7-1c18-4c14-948b-7dc759c65613 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A204.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A204 TCGA-BH-A204-01A TCGA-BH-A204-01A-11D-A161-05 a1ae7ce7-1c18-4c14-948b-7dc759c65613 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A204.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A204 TCGA-BH-A204-11A TCGA-BH-A204-11A-53D-A158-02 9ecff93e-1d09-4b0f-b408-d24379d56fc9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A204.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A204 TCGA-BH-A204-11A TCGA-BH-A204-11A-53D-A159-09 38726a6a-7c67-43c9-b795-71512b2a6f7f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A204.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A204 TCGA-BH-A204-11A TCGA-BH-A204-11A-53D-A160-01 b9359e93-0d44-43af-9773-4b0dca362849 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A204.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A204 TCGA-BH-A204-11A TCGA-BH-A204-11A-53D-A160-01 b9359e93-0d44-43af-9773-4b0dca362849 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_568761.TCGA-BH-A204-11A-53R-A157-07.110926_UNC12-SN629_0143_AD0DY7ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A204 TCGA-BH-A204-11A TCGA-BH-A204-11A-53W-A16L-09 d816b9d2-f735-4d95-aaf3-b6c364e34876 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A204.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A208 TCGA-BH-A208-01A TCGA-BH-A208-01A-11D-A158-02 88b5edbd-1cfc-4e40-9476-d566051ea83e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A208.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A208 TCGA-BH-A208-01A TCGA-BH-A208-01A-11D-A159-09 ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A208.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A208 TCGA-BH-A208-01A TCGA-BH-A208-01A-11D-A160-01 c2ab364e-16f8-47de-a506-35ec95fcd29d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A208.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A208 TCGA-BH-A208-01A TCGA-BH-A208-01A-11D-A160-01 c2ab364e-16f8-47de-a506-35ec95fcd29d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B01_787488.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-BH-A208 TCGA-BH-A208-01A TCGA-BH-A208-01A-11D-A160-01 c2ab364e-16f8-47de-a506-35ec95fcd29d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B01_787488.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-BH-A208 TCGA-BH-A208-01A TCGA-BH-A208-01A-11D-A160-01 c2ab364e-16f8-47de-a506-35ec95fcd29d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B01_787488.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-BH-A208 TCGA-BH-A208-01A TCGA-BH-A208-01A-11D-A160-01 c2ab364e-16f8-47de-a506-35ec95fcd29d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B01_787488.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-BH-A208 TCGA-BH-A208-01A TCGA-BH-A208-01A-11D-A160-01 c2ab364e-16f8-47de-a506-35ec95fcd29d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B01_787488.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-BH-A208 TCGA-BH-A208-01A TCGA-BH-A208-01A-11D-A160-01 c2ab364e-16f8-47de-a506-35ec95fcd29d SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B01_787488.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0 136 07-DEC-11 01.00.02.682000000 PM TCGA-BH-A208 TCGA-BH-A208-01A TCGA-BH-A208-01A-11D-A161-05 3263accb-e6c7-4884-944a-6c5e2e18481b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A208.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A208 TCGA-BH-A208-01A TCGA-BH-A208-01A-11D-A161-05 3263accb-e6c7-4884-944a-6c5e2e18481b DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-2.TCGA-BH-A208-01A-11D-A161-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0 136 07-NOV-11 04.57.19.359000000 PM TCGA-BH-A208 TCGA-BH-A208-01A TCGA-BH-A208-01A-11D-A161-05 3263accb-e6c7-4884-944a-6c5e2e18481b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-3.TCGA-BH-A208-01A-11D-A161-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0 136 07-NOV-11 05.36.48.633000000 PM TCGA-BH-A208 TCGA-BH-A208-01A TCGA-BH-A208-01A-11D-A17G-09 6d247394-fdfb-4efb-8170-4efa5e77af19 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_568692.TCGA-BH-A208-01A-11R-A157-07.110926_UNC12-SN629_0143_AD0DY7ABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A208 TCGA-BH-A208-01A TCGA-BH-A208-01A-11R-A157-07 7a276d04-8f45-4c07-9c24-8b1f50a1202d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_568807.TCGA-BH-A208-01A-11R-A157-07.110926_UNC12-SN629_0143_AD0DY7ABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A208 TCGA-BH-A208-01A TCGA-BH-A208-01A-11W-A16L-09 1aa3498b-20bd-44a2-9bf8-6eea8a1747c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A208.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A208 TCGA-BH-A208-11A TCGA-BH-A208-11A-51D-A158-02 6ab7ea12-3e4e-48fa-b3f6-be4eac758201 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A208.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A208 TCGA-BH-A208-11A TCGA-BH-A208-11A-51D-A159-09 e3c69830-05a7-4679-8d75-37591eade0bc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A208.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A208 TCGA-BH-A208-11A TCGA-BH-A208-11A-51D-A160-01 0a813b12-1245-4687-b4f1-88ca3576fbc1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A208.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A208 TCGA-BH-A208-11A TCGA-BH-A208-11A-51D-A160-01 0a813b12-1245-4687-b4f1-88ca3576fbc1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H03_787622.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-BH-A208 TCGA-BH-A208-11A TCGA-BH-A208-11A-51D-A160-01 0a813b12-1245-4687-b4f1-88ca3576fbc1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H03_787622.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-BH-A208 TCGA-BH-A208-11A TCGA-BH-A208-11A-51D-A160-01 0a813b12-1245-4687-b4f1-88ca3576fbc1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H03_787622.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-BH-A208 TCGA-BH-A208-11A TCGA-BH-A208-11A-51D-A160-01 0a813b12-1245-4687-b4f1-88ca3576fbc1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H03_787622.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-BH-A208 TCGA-BH-A208-11A TCGA-BH-A208-11A-51D-A160-01 0a813b12-1245-4687-b4f1-88ca3576fbc1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H03_787622.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-BH-A208 TCGA-BH-A208-11A TCGA-BH-A208-11A-51D-A160-01 0a813b12-1245-4687-b4f1-88ca3576fbc1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H03_787622.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-BH-A208 TCGA-BH-A208-11A TCGA-BH-A208-11A-51D-A160-01 0a813b12-1245-4687-b4f1-88ca3576fbc1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H03_787622.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-BH-A208 TCGA-BH-A208-11A TCGA-BH-A208-11A-51D-A160-01 0a813b12-1245-4687-b4f1-88ca3576fbc1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H03_787622.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0 136 07-DEC-11 01.00.02.682000000 PM TCGA-BH-A208 TCGA-BH-A208-11A TCGA-BH-A208-11A-51D-A161-05 be8d723d-5f34-45b6-ae74-61bc606fd1a8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A208.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A208 TCGA-BH-A208-11A TCGA-BH-A208-11A-51D-A161-05 be8d723d-5f34-45b6-ae74-61bc606fd1a8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0/6042324006_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0 136 07-NOV-11 04.13.40.962000000 PM TCGA-BH-A208 TCGA-BH-A208-11A TCGA-BH-A208-11A-51D-A161-05 be8d723d-5f34-45b6-ae74-61bc606fd1a8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0/6042324006_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0 136 07-NOV-11 04.13.40.962000000 PM TCGA-BH-A208 TCGA-BH-A208-11A TCGA-BH-A208-11A-51D-A161-05 be8d723d-5f34-45b6-ae74-61bc606fd1a8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-2.TCGA-BH-A208-11A-51D-A161-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0 136 07-NOV-11 04.57.19.359000000 PM TCGA-BH-A208 TCGA-BH-A208-11A TCGA-BH-A208-11A-51D-A161-05 be8d723d-5f34-45b6-ae74-61bc606fd1a8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-3.TCGA-BH-A208-11A-51D-A161-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0 136 07-NOV-11 05.36.48.633000000 PM TCGA-BH-A208 TCGA-BH-A208-11A TCGA-BH-A208-11A-51D-A17G-09 881781fa-8499-46d1-8313-cd4e442479d0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A208.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A208 TCGA-BH-A208-11A TCGA-BH-A208-11A-51R-A156-13 8ec5a101-a032-49c2-b056-fa44a39467a7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A208.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A208 TCGA-BH-A208-11A TCGA-BH-A208-11A-51R-A156-13 8ec5a101-a032-49c2-b056-fa44a39467a7 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A208-11A-51R-A156-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A208 TCGA-BH-A208-11A TCGA-BH-A208-11A-51R-A156-13 8ec5a101-a032-49c2-b056-fa44a39467a7 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-BH-A208-11A-51R-A156-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-BH-A208 TCGA-BH-A208-11A TCGA-BH-A208-11A-51R-A157-07 a0ac3d9f-7700-4319-929a-fb51d85c9d49 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A208.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A208 TCGA-BH-A208-11A TCGA-BH-A208-11A-51R-A157-07 a0ac3d9f-7700-4319-929a-fb51d85c9d49 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_568776.TCGA-BH-A208-11A-51R-A157-07.110926_UNC12-SN629_0143_AD0DY7ABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A208 TCGA-BH-A208-11A TCGA-BH-A208-11A-51R-A157-07 a0ac3d9f-7700-4319-929a-fb51d85c9d49 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_568803.TCGA-BH-A208-11A-51R-A157-07.110926_UNC12-SN629_0143_AD0DY7ABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A208 TCGA-BH-A208-11A TCGA-BH-A208-11A-51R-A157-07 a0ac3d9f-7700-4319-929a-fb51d85c9d49 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_568909.TCGA-BH-A208-11A-51R-A157-07.110926_UNC12-SN629_0143_AD0DY7ABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-BH-A208 TCGA-BH-A208-11A TCGA-BH-A208-11A-51W-A16L-09 8687f82b-f9a2-45f2-9b60-4e22cebb5699 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A208.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A209 TCGA-BH-A209-01A TCGA-BH-A209-01A-11D-A158-02 b8780d0d-d2a9-4e76-889d-988a0ff13c6f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A209.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A209 TCGA-BH-A209-01A TCGA-BH-A209-01A-11D-A159-09 b3eb9d17-dc4e-40f9-8ae0-3e093d92f471 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A209.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A209 TCGA-BH-A209-01A TCGA-BH-A209-01A-11D-A160-01 7e96d825-cf43-4caa-b6be-9a972e9295f3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A209.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A209 TCGA-BH-A209-01A TCGA-BH-A209-01A-11D-A160-01 7e96d825-cf43-4caa-b6be-9a972e9295f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H04_787628.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-BH-A209 TCGA-BH-A209-01A TCGA-BH-A209-01A-11D-A160-01 7e96d825-cf43-4caa-b6be-9a972e9295f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H04_787628.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-BH-A209 TCGA-BH-A209-01A TCGA-BH-A209-01A-11D-A160-01 7e96d825-cf43-4caa-b6be-9a972e9295f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H04_787628.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-BH-A209 TCGA-BH-A209-01A TCGA-BH-A209-01A-11D-A160-01 7e96d825-cf43-4caa-b6be-9a972e9295f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H04_787628.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-BH-A209 TCGA-BH-A209-01A TCGA-BH-A209-01A-11D-A160-01 7e96d825-cf43-4caa-b6be-9a972e9295f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H04_787628.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-BH-A209 TCGA-BH-A209-01A TCGA-BH-A209-01A-11D-A160-01 7e96d825-cf43-4caa-b6be-9a972e9295f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H04_787628.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-BH-A209 TCGA-BH-A209-01A TCGA-BH-A209-01A-11D-A160-01 7e96d825-cf43-4caa-b6be-9a972e9295f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H04_787628.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-BH-A209 TCGA-BH-A209-01A TCGA-BH-A209-01A-11D-A160-01 7e96d825-cf43-4caa-b6be-9a972e9295f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H04_787628.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0 136 07-DEC-11 01.00.02.682000000 PM TCGA-BH-A209 TCGA-BH-A209-01A TCGA-BH-A209-01A-11D-A161-05 3d85b18b-8a18-4e9e-89b1-b77b66b97306 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A209.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A209 TCGA-BH-A209-01A TCGA-BH-A209-01A-11D-A161-05 3d85b18b-8a18-4e9e-89b1-b77b66b97306 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A209.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A209 TCGA-BH-A209-11A TCGA-BH-A209-11A-42D-A158-02 1be898f6-0a88-4514-bfc3-cab24da3f51b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A209.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A209 TCGA-BH-A209-11A TCGA-BH-A209-11A-42D-A159-09 521075e6-12ce-486e-aa85-a9b8683aff48 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A209.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A209 TCGA-BH-A209-11A TCGA-BH-A209-11A-42D-A160-01 b205bdad-b933-4258-96d5-65a2b27d0ff9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-BH-A209.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-BH-A209 TCGA-BH-A209-11A TCGA-BH-A209-11A-42D-A160-01 b205bdad-b933-4258-96d5-65a2b27d0ff9 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.177.7.0/nationwidechildrens.org_biospecimen.TCGA-BH-A2L8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.177.7.0 177 01-FEB-12 04.46.32.306000000 PM TCGA-BH-A2L8 TCGA-BH-A2L8-01A TCGA-BH-A2L8-01A-11D-A18O-05 fe5a6656-b2f9-43e9-bff1-8c84fc08acce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.177.7.0/nationwidechildrens.org_biospecimen.TCGA-BH-A2L8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.177.7.0 177 01-FEB-12 04.46.32.306000000 PM TCGA-BH-A2L8 TCGA-BH-A2L8-01A TCGA-BH-A2L8-01A-11D-A18P-09 ce4179d3-b31d-4242-8ec1-f6785f9af2e1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.177.7.0/nationwidechildrens.org_biospecimen.TCGA-BH-A2L8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.177.7.0 177 01-FEB-12 04.46.32.306000000 PM TCGA-BH-A2L8 TCGA-BH-A2L8-01A TCGA-BH-A2L8-01A-11R-A18L-13 99eaceec-a938-40ae-8afe-f6de94f13f34 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.177.7.0/nationwidechildrens.org_biospecimen.TCGA-BH-A2L8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.177.7.0 177 01-FEB-12 04.46.32.306000000 PM TCGA-BH-A2L8 TCGA-BH-A2L8-01A TCGA-BH-A2L8-01A-11R-A18M-07 c55bb0b8-3417-4142-97f8-c43f1ec56496 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.177.7.0/nationwidechildrens.org_biospecimen.TCGA-BH-A2L8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.177.7.0 177 01-FEB-12 04.46.32.306000000 PM TCGA-BH-A2L8 TCGA-BH-A2L8-01A TCGA-BH-A2L8-01A-11W-A19U-09 fcddf707-6fe0-4bd1-8544-9dc2aab75d52 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.177.7.0/nationwidechildrens.org_biospecimen.TCGA-BH-A2L8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.177.7.0 177 01-FEB-12 04.46.32.306000000 PM TCGA-BH-A2L8 TCGA-BH-A2L8-10A TCGA-BH-A2L8-10A-01D-A18N-01 6b3a4648-2ced-4058-b280-6b039ac14786 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.177.7.0/nationwidechildrens.org_biospecimen.TCGA-BH-A2L8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.177.7.0 177 01-FEB-12 04.46.32.306000000 PM TCGA-BH-A2L8 TCGA-BH-A2L8-10A TCGA-BH-A2L8-10A-01D-A18P-09 b0e8676c-6f2d-4691-96c5-b323dded9687 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.177.7.0/nationwidechildrens.org_biospecimen.TCGA-BH-A2L8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.177.7.0 177 01-FEB-12 04.46.32.306000000 PM TCGA-BH-A2L8 TCGA-BH-A2L8-10A TCGA-BH-A2L8-10A-01W-A19U-09 6ff6e8c6-e445-46b9-ab2d-16d6f74fbdc7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.177.7.0/nationwidechildrens.org_biospecimen.TCGA-BH-A2L8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.177.7.0 177 01-FEB-12 04.46.32.306000000 PM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21D-A10X-02 6ed95a9f-69a2-482f-a22e-9dd9ff37cd18 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21D-A10Y-09 bcf92c27-3aa7-4449-9c7a-fc715789788f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21D-A10Y-09 bcf92c27-3aa7-4449-9c7a-fc715789788f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21D-A111-01 cab482fe-e5e3-438a-8ece-322111d17c4b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21D-A111-01 cab482fe-e5e3-438a-8ece-322111d17c4b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D12_735290.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21D-A111-01 cab482fe-e5e3-438a-8ece-322111d17c4b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D12_735290.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21D-A111-01 cab482fe-e5e3-438a-8ece-322111d17c4b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D12_735290.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21D-A111-01 cab482fe-e5e3-438a-8ece-322111d17c4b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D12_735290.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21D-A111-01 cab482fe-e5e3-438a-8ece-322111d17c4b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D12_735290.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21D-A111-01 cab482fe-e5e3-438a-8ece-322111d17c4b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D12_735290.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21D-A111-01 cab482fe-e5e3-438a-8ece-322111d17c4b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D12_735290.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21D-A111-01 cab482fe-e5e3-438a-8ece-322111d17c4b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D12_735290.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21D-A112-05 be479cd4-8450-45ae-8de9-5fcdc68931e6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21D-A112-05 be479cd4-8450-45ae-8de9-5fcdc68931e6 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-C8-A12K-01A-21D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21D-A112-05 be479cd4-8450-45ae-8de9-5fcdc68931e6 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-C8-A12K-01A-21D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21D-A112-05 be479cd4-8450-45ae-8de9-5fcdc68931e6 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-C8-A12K-01A-21D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21R-A114-13 45329143-a2a0-47a6-a029-bc206a5f3919 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21R-A114-13 45329143-a2a0-47a6-a029-bc206a5f3919 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A12K-01A-21R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21R-A114-13 45329143-a2a0-47a6-a029-bc206a5f3919 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A12K-01A-21R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21R-A115-07 0ef00203-8a0a-4d04-aa1e-c1164958d8ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21R-A115-07 0ef00203-8a0a-4d04-aa1e-c1164958d8ec Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012775_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21R-A115-07 0ef00203-8a0a-4d04-aa1e-c1164958d8ec Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012775_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21R-A115-07 0ef00203-8a0a-4d04-aa1e-c1164958d8ec Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012775_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21R-A115-07 0ef00203-8a0a-4d04-aa1e-c1164958d8ec RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_410969.TCGA-C8-A12K-01A-21R-A115-07.110607_UNC14-SN744_0124_AD0CVCABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21R-A115-07 0ef00203-8a0a-4d04-aa1e-c1164958d8ec RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_411013.TCGA-C8-A12K-01A-21R-A115-07.110607_UNC14-SN744_0124_AD0CVCABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21R-A115-07 0ef00203-8a0a-4d04-aa1e-c1164958d8ec RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_411042.TCGA-C8-A12K-01A-21R-A115-07.110607_UNC14-SN744_0124_AD0CVCABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12K TCGA-C8-A12K-01A TCGA-C8-A12K-01A-21W-A12T-09 690d6cc4-34ee-4440-8108-8ae774a2a003 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12K TCGA-C8-A12K-10A TCGA-C8-A12K-10A-01D-A10Z-02 3e552a51-5a9a-40ce-b8ae-2f5b59f7bd81 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12K TCGA-C8-A12K-10A TCGA-C8-A12K-10A-01D-A110-09 5516f85d-911f-451a-b9b2-3bf9b4e5d74b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12K TCGA-C8-A12K-10A TCGA-C8-A12K-10A-01D-A110-09 5516f85d-911f-451a-b9b2-3bf9b4e5d74b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12K TCGA-C8-A12K-10A TCGA-C8-A12K-10A-01D-A113-01 72d7446c-0418-4863-952e-d337948a6961 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12K TCGA-C8-A12K-10A TCGA-C8-A12K-10A-01D-A113-01 72d7446c-0418-4863-952e-d337948a6961 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C01_735380.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A12K TCGA-C8-A12K-10A TCGA-C8-A12K-10A-01D-A113-01 72d7446c-0418-4863-952e-d337948a6961 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C01_735380.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12K TCGA-C8-A12K-10A TCGA-C8-A12K-10A-01D-A113-01 72d7446c-0418-4863-952e-d337948a6961 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C01_735380.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12K TCGA-C8-A12K-10A TCGA-C8-A12K-10A-01D-A113-01 72d7446c-0418-4863-952e-d337948a6961 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C01_735380.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12K TCGA-C8-A12K-10A TCGA-C8-A12K-10A-01D-A113-01 72d7446c-0418-4863-952e-d337948a6961 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C01_735380.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12K TCGA-C8-A12K-10A TCGA-C8-A12K-10A-01D-A113-01 72d7446c-0418-4863-952e-d337948a6961 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C01_735380.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12K TCGA-C8-A12K-10A TCGA-C8-A12K-10A-01D-A113-01 72d7446c-0418-4863-952e-d337948a6961 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C01_735380.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12K TCGA-C8-A12K-10A TCGA-C8-A12K-10A-01D-A113-01 72d7446c-0418-4863-952e-d337948a6961 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C01_735380.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A12K TCGA-C8-A12K-10A TCGA-C8-A12K-10A-01W-A12U-09 5c8376fb-3c1e-44bc-8e31-41a98f80aafe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11D-A10X-02 8941a1bd-8de3-4cea-ba7e-dd2d0fa5051c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11D-A10Y-09 998a465a-d084-4d7f-8c02-8c5be1e1ee27 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11D-A10Y-09 998a465a-d084-4d7f-8c02-8c5be1e1ee27 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11D-A111-01 3cd311fc-51df-4b20-9c27-fabb68bc3e2c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11D-A111-01 3cd311fc-51df-4b20-9c27-fabb68bc3e2c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E04_735320.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11D-A111-01 3cd311fc-51df-4b20-9c27-fabb68bc3e2c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E04_735320.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11D-A111-01 3cd311fc-51df-4b20-9c27-fabb68bc3e2c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E04_735320.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11D-A111-01 3cd311fc-51df-4b20-9c27-fabb68bc3e2c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E04_735320.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11D-A111-01 3cd311fc-51df-4b20-9c27-fabb68bc3e2c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E04_735320.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11D-A111-01 3cd311fc-51df-4b20-9c27-fabb68bc3e2c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E04_735320.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11D-A111-01 3cd311fc-51df-4b20-9c27-fabb68bc3e2c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E04_735320.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11D-A111-01 3cd311fc-51df-4b20-9c27-fabb68bc3e2c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E04_735320.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11D-A112-05 9ccec126-60d7-43d8-86d5-9f344a033789 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11D-A112-05 9ccec126-60d7-43d8-86d5-9f344a033789 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-C8-A12L-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11D-A112-05 9ccec126-60d7-43d8-86d5-9f344a033789 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-C8-A12L-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11D-A112-05 9ccec126-60d7-43d8-86d5-9f344a033789 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-C8-A12L-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11D-A19H-09 d5372745-95cf-4572-a6e7-e7f5b796911a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11R-A114-13 edacbe30-1068-41c2-b806-4c1365828531 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11R-A114-13 edacbe30-1068-41c2-b806-4c1365828531 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A12L-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11R-A114-13 edacbe30-1068-41c2-b806-4c1365828531 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A12L-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11R-A115-07 0a5a7511-4e7b-4fe4-b323-c354acffab57 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11R-A115-07 0a5a7511-4e7b-4fe4-b323-c354acffab57 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012789_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11R-A115-07 0a5a7511-4e7b-4fe4-b323-c354acffab57 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012789_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11R-A115-07 0a5a7511-4e7b-4fe4-b323-c354acffab57 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012789_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11R-A115-07 0a5a7511-4e7b-4fe4-b323-c354acffab57 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420758.TCGA-C8-A12L-01A-11R-A115-07.110608_SN254_0230_AC03JGABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11R-A115-07 0a5a7511-4e7b-4fe4-b323-c354acffab57 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420777.TCGA-C8-A12L-01A-11R-A115-07.110608_SN254_0230_AC03JGABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11R-A115-07 0a5a7511-4e7b-4fe4-b323-c354acffab57 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420829.TCGA-C8-A12L-01A-11R-A115-07.110608_SN254_0230_AC03JGABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12L TCGA-C8-A12L-01A TCGA-C8-A12L-01A-11W-A12T-09 ee742acc-fdec-48f4-a329-2c9a2e7ff22f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12L TCGA-C8-A12L-10A TCGA-C8-A12L-10A-01D-A10Z-02 0c23fee8-31d5-454f-aed1-e4325e0af506 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12L TCGA-C8-A12L-10A TCGA-C8-A12L-10A-01D-A110-09 8fedd128-c3e3-451c-8a22-fc76a2e8103e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12L TCGA-C8-A12L-10A TCGA-C8-A12L-10A-01D-A110-09 8fedd128-c3e3-451c-8a22-fc76a2e8103e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12L TCGA-C8-A12L-10A TCGA-C8-A12L-10A-01D-A113-01 38d4c70a-4930-427c-b1d0-9aa7d54d4c44 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12L TCGA-C8-A12L-10A TCGA-C8-A12L-10A-01D-A19H-09 5c18404d-8918-4a84-b1c2-ae7d7731c213 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12L TCGA-C8-A12L-10A TCGA-C8-A12L-10A-01W-A12U-09 28cb9b4a-9c7c-4c67-bb9f-c4ecda643f12 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11D-A10X-02 d2b5b00e-0c8d-408c-a04b-4bb97d7b8627 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11D-A10Y-09 9dd4002d-0293-4b16-8654-ea026168e721 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11D-A111-01 29a000d7-43d4-4f30-b63b-35836f20384a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11D-A111-01 29a000d7-43d4-4f30-b63b-35836f20384a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H06_735344.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11D-A111-01 29a000d7-43d4-4f30-b63b-35836f20384a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H06_735344.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11D-A111-01 29a000d7-43d4-4f30-b63b-35836f20384a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H06_735344.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11D-A111-01 29a000d7-43d4-4f30-b63b-35836f20384a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H06_735344.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11D-A111-01 29a000d7-43d4-4f30-b63b-35836f20384a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H06_735344.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11D-A111-01 29a000d7-43d4-4f30-b63b-35836f20384a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H06_735344.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11D-A111-01 29a000d7-43d4-4f30-b63b-35836f20384a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H06_735344.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11D-A111-01 29a000d7-43d4-4f30-b63b-35836f20384a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H06_735344.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11D-A112-05 3614f752-51a0-4ad3-b17e-705181328c0f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11D-A112-05 3614f752-51a0-4ad3-b17e-705181328c0f DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-C8-A12M-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11D-A112-05 3614f752-51a0-4ad3-b17e-705181328c0f DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-C8-A12M-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11D-A112-05 3614f752-51a0-4ad3-b17e-705181328c0f DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-C8-A12M-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11D-A135-09 9a0a7b93-da6e-45b7-9a6f-190d79552b49 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11D-A135-09 9a0a7b93-da6e-45b7-9a6f-190d79552b49 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11R-A114-13 e9df1b40-c92c-49ca-b6d0-0dfa3f5aa754 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11R-A114-13 e9df1b40-c92c-49ca-b6d0-0dfa3f5aa754 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A12M-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11R-A114-13 e9df1b40-c92c-49ca-b6d0-0dfa3f5aa754 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A12M-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11R-A115-07 8f007e7a-6260-4ecc-baff-f68665b760cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11R-A115-07 8f007e7a-6260-4ecc-baff-f68665b760cb Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012801_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11R-A115-07 8f007e7a-6260-4ecc-baff-f68665b760cb Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012801_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11R-A115-07 8f007e7a-6260-4ecc-baff-f68665b760cb Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012801_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11R-A115-07 8f007e7a-6260-4ecc-baff-f68665b760cb RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420757.TCGA-C8-A12M-01A-11R-A115-07.110608_SN254_0230_AC03JGABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11R-A115-07 8f007e7a-6260-4ecc-baff-f68665b760cb RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420763.TCGA-C8-A12M-01A-11R-A115-07.110608_SN254_0230_AC03JGABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11R-A115-07 8f007e7a-6260-4ecc-baff-f68665b760cb RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420821.TCGA-C8-A12M-01A-11R-A115-07.110608_SN254_0230_AC03JGABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12M TCGA-C8-A12M-01A TCGA-C8-A12M-01A-11W-A12T-09 f84ef9cb-c13a-48df-8c21-81f2d8791c08 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12M TCGA-C8-A12M-10A TCGA-C8-A12M-10A-01D-A10Z-02 2512b897-441c-441e-a920-f57449e909a8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12M TCGA-C8-A12M-10A TCGA-C8-A12M-10A-01D-A110-09 5f9aae0c-1d2f-4bb2-b801-32478f7058a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12M TCGA-C8-A12M-10A TCGA-C8-A12M-10A-01D-A110-09 5f9aae0c-1d2f-4bb2-b801-32478f7058a2 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12M TCGA-C8-A12M-10A TCGA-C8-A12M-10A-01D-A113-01 66bf8dfc-138c-487c-a568-ac4bd89a2de8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12M TCGA-C8-A12M-10A TCGA-C8-A12M-10A-01D-A113-01 66bf8dfc-138c-487c-a568-ac4bd89a2de8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C07_735360.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A12M TCGA-C8-A12M-10A TCGA-C8-A12M-10A-01D-A113-01 66bf8dfc-138c-487c-a568-ac4bd89a2de8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C07_735360.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12M TCGA-C8-A12M-10A TCGA-C8-A12M-10A-01D-A113-01 66bf8dfc-138c-487c-a568-ac4bd89a2de8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C07_735360.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12M TCGA-C8-A12M-10A TCGA-C8-A12M-10A-01D-A113-01 66bf8dfc-138c-487c-a568-ac4bd89a2de8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C07_735360.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12M TCGA-C8-A12M-10A TCGA-C8-A12M-10A-01D-A113-01 66bf8dfc-138c-487c-a568-ac4bd89a2de8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C07_735360.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12M TCGA-C8-A12M-10A TCGA-C8-A12M-10A-01D-A113-01 66bf8dfc-138c-487c-a568-ac4bd89a2de8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C07_735360.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12M TCGA-C8-A12M-10A TCGA-C8-A12M-10A-01D-A113-01 66bf8dfc-138c-487c-a568-ac4bd89a2de8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C07_735360.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12M TCGA-C8-A12M-10A TCGA-C8-A12M-10A-01D-A113-01 66bf8dfc-138c-487c-a568-ac4bd89a2de8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C07_735360.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A12M TCGA-C8-A12M-10A TCGA-C8-A12M-10A-01W-A12U-09 494046e2-288c-4bbc-bafc-a0411b1ee42d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11D-A10X-02 cd9b8eb8-630c-4554-b26b-c386e434f688 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11D-A10Y-09 e2af7f0c-3cf4-4ffe-b764-b4fd83bf7694 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11D-A10Y-09 e2af7f0c-3cf4-4ffe-b764-b4fd83bf7694 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11D-A111-01 48becee8-1c71-4320-b0e8-72e345797daf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11D-A111-01 48becee8-1c71-4320-b0e8-72e345797daf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F10_735296.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11D-A111-01 48becee8-1c71-4320-b0e8-72e345797daf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F10_735296.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11D-A111-01 48becee8-1c71-4320-b0e8-72e345797daf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F10_735296.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11D-A111-01 48becee8-1c71-4320-b0e8-72e345797daf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F10_735296.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11D-A111-01 48becee8-1c71-4320-b0e8-72e345797daf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F10_735296.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11D-A111-01 48becee8-1c71-4320-b0e8-72e345797daf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F10_735296.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11D-A111-01 48becee8-1c71-4320-b0e8-72e345797daf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F10_735296.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11D-A111-01 48becee8-1c71-4320-b0e8-72e345797daf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F10_735296.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11D-A112-05 a7bbc97b-27ca-4979-b534-4e0fcb461125 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11D-A112-05 a7bbc97b-27ca-4979-b534-4e0fcb461125 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-C8-A12N-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11D-A112-05 a7bbc97b-27ca-4979-b534-4e0fcb461125 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-C8-A12N-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11D-A112-05 a7bbc97b-27ca-4979-b534-4e0fcb461125 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-C8-A12N-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11R-A114-13 56242316-a973-46f9-a8f7-14a96681a24b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11R-A114-13 56242316-a973-46f9-a8f7-14a96681a24b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A12N-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11R-A114-13 56242316-a973-46f9-a8f7-14a96681a24b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A12N-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11R-A115-07 9eb3306d-6c84-4bc1-be42-4bd00ef46cbb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11R-A115-07 9eb3306d-6c84-4bc1-be42-4bd00ef46cbb Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012813_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11R-A115-07 9eb3306d-6c84-4bc1-be42-4bd00ef46cbb Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012813_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11R-A115-07 9eb3306d-6c84-4bc1-be42-4bd00ef46cbb Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012813_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11R-A115-07 9eb3306d-6c84-4bc1-be42-4bd00ef46cbb RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421441.TCGA-C8-A12N-01A-11R-A115-07.110527_UNC10-SN254_0224_AD0CPKABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11R-A115-07 9eb3306d-6c84-4bc1-be42-4bd00ef46cbb RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421456.TCGA-C8-A12N-01A-11R-A115-07.110527_UNC10-SN254_0224_AD0CPKABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11R-A115-07 9eb3306d-6c84-4bc1-be42-4bd00ef46cbb RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421487.TCGA-C8-A12N-01A-11R-A115-07.110527_UNC10-SN254_0224_AD0CPKABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12N TCGA-C8-A12N-01A TCGA-C8-A12N-01A-11W-A12T-09 2e76f245-d24c-4284-9ac5-9e6b2bdc1284 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12N TCGA-C8-A12N-10A TCGA-C8-A12N-10A-01D-A10Z-02 4a28014e-387d-4d35-91bd-3b3f8b3c1748 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12N TCGA-C8-A12N-10A TCGA-C8-A12N-10A-01D-A110-09 b9c55351-2b86-4ced-bf0b-0bc91ada0f91 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12N TCGA-C8-A12N-10A TCGA-C8-A12N-10A-01D-A110-09 b9c55351-2b86-4ced-bf0b-0bc91ada0f91 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12N TCGA-C8-A12N-10A TCGA-C8-A12N-10A-01D-A113-01 fc335c43-fa73-4c2a-a803-90901296720a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12N TCGA-C8-A12N-10A TCGA-C8-A12N-10A-01D-A113-01 fc335c43-fa73-4c2a-a803-90901296720a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E09_735356.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A12N TCGA-C8-A12N-10A TCGA-C8-A12N-10A-01D-A113-01 fc335c43-fa73-4c2a-a803-90901296720a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E09_735356.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12N TCGA-C8-A12N-10A TCGA-C8-A12N-10A-01D-A113-01 fc335c43-fa73-4c2a-a803-90901296720a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E09_735356.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12N TCGA-C8-A12N-10A TCGA-C8-A12N-10A-01D-A113-01 fc335c43-fa73-4c2a-a803-90901296720a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E09_735356.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12N TCGA-C8-A12N-10A TCGA-C8-A12N-10A-01D-A113-01 fc335c43-fa73-4c2a-a803-90901296720a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E09_735356.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12N TCGA-C8-A12N-10A TCGA-C8-A12N-10A-01D-A113-01 fc335c43-fa73-4c2a-a803-90901296720a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E09_735356.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12N TCGA-C8-A12N-10A TCGA-C8-A12N-10A-01D-A113-01 fc335c43-fa73-4c2a-a803-90901296720a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E09_735356.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12N TCGA-C8-A12N-10A TCGA-C8-A12N-10A-01D-A113-01 fc335c43-fa73-4c2a-a803-90901296720a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E09_735356.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A12N TCGA-C8-A12N-10A TCGA-C8-A12N-10A-01W-A12U-09 ebcb3d07-70ad-4e76-abdb-4905160cc3f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12O TCGA-C8-A12O-01A TCGA-C8-A12O-01A-11D-A10X-02 99ad3101-fa71-463d-a016-4e885b3301be Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12O TCGA-C8-A12O-01A TCGA-C8-A12O-01A-11D-A10Y-09 51dbda2a-106b-4597-aa49-609b677866c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12O TCGA-C8-A12O-01A TCGA-C8-A12O-01A-11D-A10Y-09 51dbda2a-106b-4597-aa49-609b677866c8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12O TCGA-C8-A12O-01A TCGA-C8-A12O-01A-11D-A111-01 0c86eab9-cfc8-4a03-823b-4331c43d2038 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12O TCGA-C8-A12O-01A TCGA-C8-A12O-01A-11D-A112-05 4147dcd1-354b-464a-8ec0-6f63c11512a4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12O TCGA-C8-A12O-01A TCGA-C8-A12O-01A-11D-A112-05 4147dcd1-354b-464a-8ec0-6f63c11512a4 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-C8-A12O-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-C8-A12O TCGA-C8-A12O-01A TCGA-C8-A12O-01A-11D-A112-05 4147dcd1-354b-464a-8ec0-6f63c11512a4 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-C8-A12O-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-C8-A12O TCGA-C8-A12O-01A TCGA-C8-A12O-01A-11D-A112-05 4147dcd1-354b-464a-8ec0-6f63c11512a4 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-C8-A12O-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-C8-A12O TCGA-C8-A12O-01A TCGA-C8-A12O-01A-11R-A114-13 472c2410-9152-4cf0-8946-0964b5d01e83 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12O TCGA-C8-A12O-01A TCGA-C8-A12O-01A-11R-A114-13 472c2410-9152-4cf0-8946-0964b5d01e83 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A12O-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A12O TCGA-C8-A12O-01A TCGA-C8-A12O-01A-11R-A114-13 472c2410-9152-4cf0-8946-0964b5d01e83 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A12O-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A12O TCGA-C8-A12O-01A TCGA-C8-A12O-01A-11R-A115-07 5efabaa8-f296-4c9c-9632-559ef7f6dd44 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12O TCGA-C8-A12O-01A TCGA-C8-A12O-01A-11R-A115-07 5efabaa8-f296-4c9c-9632-559ef7f6dd44 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012824_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-C8-A12O TCGA-C8-A12O-01A TCGA-C8-A12O-01A-11R-A115-07 5efabaa8-f296-4c9c-9632-559ef7f6dd44 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012824_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-C8-A12O TCGA-C8-A12O-01A TCGA-C8-A12O-01A-11R-A115-07 5efabaa8-f296-4c9c-9632-559ef7f6dd44 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012824_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-C8-A12O TCGA-C8-A12O-01A TCGA-C8-A12O-01A-11R-A115-07 5efabaa8-f296-4c9c-9632-559ef7f6dd44 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421480.TCGA-C8-A12O-01A-11R-A115-07.110527_UNC10-SN254_0224_AD0CPKABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12O TCGA-C8-A12O-01A TCGA-C8-A12O-01A-11R-A115-07 5efabaa8-f296-4c9c-9632-559ef7f6dd44 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421481.TCGA-C8-A12O-01A-11R-A115-07.110527_UNC10-SN254_0224_AD0CPKABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12O TCGA-C8-A12O-01A TCGA-C8-A12O-01A-11R-A115-07 5efabaa8-f296-4c9c-9632-559ef7f6dd44 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421494.TCGA-C8-A12O-01A-11R-A115-07.110527_UNC10-SN254_0224_AD0CPKABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12O TCGA-C8-A12O-01A TCGA-C8-A12O-01A-11W-A12T-09 d1029eff-1a4d-4d89-a860-460763c00969 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12O TCGA-C8-A12O-10A TCGA-C8-A12O-10A-01D-A10Z-02 128bea01-bbe2-467a-9a47-88a513e1c093 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12O TCGA-C8-A12O-10A TCGA-C8-A12O-10A-01D-A110-09 5d34bbb4-54c8-4a35-baee-80c72548ca34 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12O TCGA-C8-A12O-10A TCGA-C8-A12O-10A-01D-A110-09 5d34bbb4-54c8-4a35-baee-80c72548ca34 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12O TCGA-C8-A12O-10A TCGA-C8-A12O-10A-01D-A113-01 2f0231bf-ba91-47e8-b137-5f482fc990ff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12O TCGA-C8-A12O-10A TCGA-C8-A12O-10A-01D-A113-01 2f0231bf-ba91-47e8-b137-5f482fc990ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B05_735218.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A12O TCGA-C8-A12O-10A TCGA-C8-A12O-10A-01D-A113-01 2f0231bf-ba91-47e8-b137-5f482fc990ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B05_735218.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12O TCGA-C8-A12O-10A TCGA-C8-A12O-10A-01D-A113-01 2f0231bf-ba91-47e8-b137-5f482fc990ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B05_735218.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12O TCGA-C8-A12O-10A TCGA-C8-A12O-10A-01D-A113-01 2f0231bf-ba91-47e8-b137-5f482fc990ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B05_735218.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12O TCGA-C8-A12O-10A TCGA-C8-A12O-10A-01D-A113-01 2f0231bf-ba91-47e8-b137-5f482fc990ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B05_735218.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12O TCGA-C8-A12O-10A TCGA-C8-A12O-10A-01D-A113-01 2f0231bf-ba91-47e8-b137-5f482fc990ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B05_735218.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12O TCGA-C8-A12O-10A TCGA-C8-A12O-10A-01D-A113-01 2f0231bf-ba91-47e8-b137-5f482fc990ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B05_735218.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12O TCGA-C8-A12O-10A TCGA-C8-A12O-10A-01D-A113-01 2f0231bf-ba91-47e8-b137-5f482fc990ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B05_735218.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A12O TCGA-C8-A12O-10A TCGA-C8-A12O-10A-01W-A12U-09 81b6ae3c-671e-4976-a9f5-5e13252a2f9b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11D-A10X-02 1492fb4c-2a89-4bee-8e3f-1a8d27e835fe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11D-A10Y-09 540fe594-0186-40d3-b519-c1ccebe82247 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11D-A10Y-09 540fe594-0186-40d3-b519-c1ccebe82247 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11D-A111-01 cf2aac8b-1f32-4f0c-91f6-4b80c38d4419 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11D-A111-01 cf2aac8b-1f32-4f0c-91f6-4b80c38d4419 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G02_735364.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11D-A111-01 cf2aac8b-1f32-4f0c-91f6-4b80c38d4419 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G02_735364.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11D-A111-01 cf2aac8b-1f32-4f0c-91f6-4b80c38d4419 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G02_735364.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11D-A111-01 cf2aac8b-1f32-4f0c-91f6-4b80c38d4419 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G02_735364.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11D-A111-01 cf2aac8b-1f32-4f0c-91f6-4b80c38d4419 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G02_735364.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11D-A111-01 cf2aac8b-1f32-4f0c-91f6-4b80c38d4419 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G02_735364.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11D-A111-01 cf2aac8b-1f32-4f0c-91f6-4b80c38d4419 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G02_735364.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11D-A111-01 cf2aac8b-1f32-4f0c-91f6-4b80c38d4419 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G02_735364.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11D-A112-05 cfd7b814-7647-4bfd-9e16-701d71c74546 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11D-A112-05 cfd7b814-7647-4bfd-9e16-701d71c74546 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-C8-A12P-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11D-A112-05 cfd7b814-7647-4bfd-9e16-701d71c74546 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-C8-A12P-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11D-A112-05 cfd7b814-7647-4bfd-9e16-701d71c74546 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-C8-A12P-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11R-A114-13 9e23698a-f0d3-4576-85ce-a204416befd8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11R-A114-13 9e23698a-f0d3-4576-85ce-a204416befd8 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A12P-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11R-A114-13 9e23698a-f0d3-4576-85ce-a204416befd8 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A12P-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11R-A115-07 9e30b9ee-391d-40d9-8eba-de47656f3629 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11R-A115-07 9e30b9ee-391d-40d9-8eba-de47656f3629 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012835_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11R-A115-07 9e30b9ee-391d-40d9-8eba-de47656f3629 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012835_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11R-A115-07 9e30b9ee-391d-40d9-8eba-de47656f3629 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012835_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11R-A115-07 9e30b9ee-391d-40d9-8eba-de47656f3629 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442006.TCGA-C8-A12P-01A-11R-A115-07.110628_UNC10-SN254_0238_AC03J5ABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11R-A115-07 9e30b9ee-391d-40d9-8eba-de47656f3629 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442118.TCGA-C8-A12P-01A-11R-A115-07.110628_UNC10-SN254_0238_AC03J5ABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11R-A115-07 9e30b9ee-391d-40d9-8eba-de47656f3629 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442171.TCGA-C8-A12P-01A-11R-A115-07.110628_UNC10-SN254_0238_AC03J5ABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12P TCGA-C8-A12P-01A TCGA-C8-A12P-01A-11W-A12T-09 90b503cb-7f29-418a-85c9-67c7e5659980 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12P TCGA-C8-A12P-10A TCGA-C8-A12P-10A-01D-A10Z-02 7e8c7462-7d04-42a1-b815-92fefcf37635 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12P TCGA-C8-A12P-10A TCGA-C8-A12P-10A-01D-A110-09 323e0bfd-8f8f-41a8-a94a-8d2d862a15b1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12P TCGA-C8-A12P-10A TCGA-C8-A12P-10A-01D-A110-09 323e0bfd-8f8f-41a8-a94a-8d2d862a15b1 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12P TCGA-C8-A12P-10A TCGA-C8-A12P-10A-01D-A113-01 6c7999b5-d6a6-423e-b993-cfabcc35482e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12P TCGA-C8-A12P-10A TCGA-C8-A12P-10A-01D-A113-01 6c7999b5-d6a6-423e-b993-cfabcc35482e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F01_735238.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A12P TCGA-C8-A12P-10A TCGA-C8-A12P-10A-01D-A113-01 6c7999b5-d6a6-423e-b993-cfabcc35482e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F01_735238.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12P TCGA-C8-A12P-10A TCGA-C8-A12P-10A-01D-A113-01 6c7999b5-d6a6-423e-b993-cfabcc35482e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F01_735238.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12P TCGA-C8-A12P-10A TCGA-C8-A12P-10A-01D-A113-01 6c7999b5-d6a6-423e-b993-cfabcc35482e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F01_735238.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12P TCGA-C8-A12P-10A TCGA-C8-A12P-10A-01D-A113-01 6c7999b5-d6a6-423e-b993-cfabcc35482e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F01_735238.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12P TCGA-C8-A12P-10A TCGA-C8-A12P-10A-01D-A113-01 6c7999b5-d6a6-423e-b993-cfabcc35482e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F01_735238.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12P TCGA-C8-A12P-10A TCGA-C8-A12P-10A-01D-A113-01 6c7999b5-d6a6-423e-b993-cfabcc35482e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F01_735238.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12P TCGA-C8-A12P-10A TCGA-C8-A12P-10A-01D-A113-01 6c7999b5-d6a6-423e-b993-cfabcc35482e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F01_735238.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A12P TCGA-C8-A12P-10A TCGA-C8-A12P-10A-01W-A12U-09 397d2fc1-33c6-4863-bb60-5301d6c9806a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-01A TCGA-C8-A12Q-01A-11D-A10X-02 15d92a4c-16bf-4fe0-b9ca-91e247b709fb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-01A TCGA-C8-A12Q-01A-11D-A10Y-09 b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-01A TCGA-C8-A12Q-01A-11D-A10Y-09 b6b4af38-7ebb-4fa8-9876-6d88d2b1e7e4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-01A TCGA-C8-A12Q-01A-11D-A111-01 586f3601-cf46-45d6-9efd-a80482519e58 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-01A TCGA-C8-A12Q-01A-11D-A111-01 586f3601-cf46-45d6-9efd-a80482519e58 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D07_735348.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A12Q TCGA-C8-A12Q-01A TCGA-C8-A12Q-01A-11D-A111-01 586f3601-cf46-45d6-9efd-a80482519e58 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D07_735348.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-01A TCGA-C8-A12Q-01A-11D-A111-01 586f3601-cf46-45d6-9efd-a80482519e58 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D07_735348.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-01A TCGA-C8-A12Q-01A-11D-A111-01 586f3601-cf46-45d6-9efd-a80482519e58 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D07_735348.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-01A TCGA-C8-A12Q-01A-11D-A111-01 586f3601-cf46-45d6-9efd-a80482519e58 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D07_735348.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-01A TCGA-C8-A12Q-01A-11D-A111-01 586f3601-cf46-45d6-9efd-a80482519e58 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D07_735348.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-01A TCGA-C8-A12Q-01A-11D-A111-01 586f3601-cf46-45d6-9efd-a80482519e58 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D07_735348.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-01A TCGA-C8-A12Q-01A-11D-A111-01 586f3601-cf46-45d6-9efd-a80482519e58 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D07_735348.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-01A TCGA-C8-A12Q-01A-11D-A112-05 f5563bbe-47d4-463a-bdda-59530b3ef09b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-01A TCGA-C8-A12Q-01A-11D-A112-05 f5563bbe-47d4-463a-bdda-59530b3ef09b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-C8-A12Q-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-01A TCGA-C8-A12Q-01A-11D-A112-05 f5563bbe-47d4-463a-bdda-59530b3ef09b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-C8-A12Q-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-01A TCGA-C8-A12Q-01A-11D-A112-05 f5563bbe-47d4-463a-bdda-59530b3ef09b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-C8-A12Q-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-01A TCGA-C8-A12Q-01A-11D-A19H-09 d8c6d4b8-f279-4edc-aaa3-a1cc266aec4d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-01A TCGA-C8-A12Q-01A-11R-A114-13 073807a9-65b4-4a15-8596-e909c029bd5b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-01A TCGA-C8-A12Q-01A-11R-A114-13 073807a9-65b4-4a15-8596-e909c029bd5b miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-01A TCGA-C8-A12Q-01A-11R-A115-07 e042ea6d-3204-41a7-9811-25f4ac0c3558 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012747_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-C8-A12Q TCGA-C8-A12Q-01A TCGA-C8-A12Q-01A-11R-A115-07 e042ea6d-3204-41a7-9811-25f4ac0c3558 Expression-Genes AgilentG4502A_07_3 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420500.TCGA-C8-A12Q-01A-11R-A115-07.110608_UNC11-SN627_0103_BD0CVVABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-01A TCGA-C8-A12Q-01A-11W-A12T-09 0db795e9-b2c3-4345-9bf5-f0f613e4d3b1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-10A TCGA-C8-A12Q-10A-01D-A10Z-02 4f8c20b3-738b-46fd-8c73-1ca85a7906fb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-10A TCGA-C8-A12Q-10A-01D-A110-09 c393110b-afe2-4838-bc8f-998ca23058d9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-10A TCGA-C8-A12Q-10A-01D-A110-09 c393110b-afe2-4838-bc8f-998ca23058d9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-10A TCGA-C8-A12Q-10A-01D-A113-01 6b39fc8b-93f4-479f-a31b-7910ef5acac4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-10A TCGA-C8-A12Q-10A-01D-A113-01 6b39fc8b-93f4-479f-a31b-7910ef5acac4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A01_735202.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A12Q TCGA-C8-A12Q-10A TCGA-C8-A12Q-10A-01D-A113-01 6b39fc8b-93f4-479f-a31b-7910ef5acac4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A01_735202.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-10A TCGA-C8-A12Q-10A-01D-A113-01 6b39fc8b-93f4-479f-a31b-7910ef5acac4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A01_735202.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-10A TCGA-C8-A12Q-10A-01D-A113-01 6b39fc8b-93f4-479f-a31b-7910ef5acac4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A01_735202.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-10A TCGA-C8-A12Q-10A-01D-A113-01 6b39fc8b-93f4-479f-a31b-7910ef5acac4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A01_735202.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-10A TCGA-C8-A12Q-10A-01D-A113-01 6b39fc8b-93f4-479f-a31b-7910ef5acac4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A01_735202.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-10A TCGA-C8-A12Q-10A-01D-A113-01 6b39fc8b-93f4-479f-a31b-7910ef5acac4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A01_735202.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-10A TCGA-C8-A12Q-10A-01D-A113-01 6b39fc8b-93f4-479f-a31b-7910ef5acac4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A01_735202.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-10A TCGA-C8-A12Q-10A-01D-A19H-09 c3591328-2299-4c71-976a-064724a24c86 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12Q TCGA-C8-A12Q-10A TCGA-C8-A12Q-10A-01W-A12U-09 5b62d649-8e4b-4bab-b3f1-08c170a93e50 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11D-A10X-02 bb78e477-8aa6-463f-acac-58c4e3102ba3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11D-A10Y-09 961fae8a-d944-4866-b198-ea6f1e59a979 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11D-A10Y-09 961fae8a-d944-4866-b198-ea6f1e59a979 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11D-A111-01 f4b9a452-bbf8-4130-850b-1c9b503ef0e5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11D-A111-01 f4b9a452-bbf8-4130-850b-1c9b503ef0e5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H01_735378.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11D-A111-01 f4b9a452-bbf8-4130-850b-1c9b503ef0e5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H01_735378.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11D-A111-01 f4b9a452-bbf8-4130-850b-1c9b503ef0e5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H01_735378.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11D-A111-01 f4b9a452-bbf8-4130-850b-1c9b503ef0e5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H01_735378.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11D-A111-01 f4b9a452-bbf8-4130-850b-1c9b503ef0e5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H01_735378.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11D-A111-01 f4b9a452-bbf8-4130-850b-1c9b503ef0e5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H01_735378.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11D-A111-01 f4b9a452-bbf8-4130-850b-1c9b503ef0e5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H01_735378.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11D-A111-01 f4b9a452-bbf8-4130-850b-1c9b503ef0e5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H01_735378.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11D-A112-05 2aad7ce0-9e1c-4cdd-8297-488e6ad0db29 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11D-A112-05 2aad7ce0-9e1c-4cdd-8297-488e6ad0db29 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-C8-A12T-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11D-A112-05 2aad7ce0-9e1c-4cdd-8297-488e6ad0db29 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-C8-A12T-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11D-A112-05 2aad7ce0-9e1c-4cdd-8297-488e6ad0db29 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-C8-A12T-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11R-A114-13 363076d2-3a58-4cbb-a7fe-8c8c85526f1e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11R-A114-13 363076d2-3a58-4cbb-a7fe-8c8c85526f1e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A12T-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11R-A114-13 363076d2-3a58-4cbb-a7fe-8c8c85526f1e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A12T-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11R-A115-07 c13962b2-674a-4edc-a7c8-c077ab86d198 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11R-A115-07 c13962b2-674a-4edc-a7c8-c077ab86d198 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012764_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11R-A115-07 c13962b2-674a-4edc-a7c8-c077ab86d198 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012764_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11R-A115-07 c13962b2-674a-4edc-a7c8-c077ab86d198 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012764_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11R-A115-07 c13962b2-674a-4edc-a7c8-c077ab86d198 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_419598.TCGA-C8-A12T-01A-11R-A115-07.110608_UNC11-SN627_0103_BD0CVVABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11R-A115-07 c13962b2-674a-4edc-a7c8-c077ab86d198 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_419645.TCGA-C8-A12T-01A-11R-A115-07.110608_UNC11-SN627_0103_BD0CVVABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11R-A115-07 c13962b2-674a-4edc-a7c8-c077ab86d198 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_419660.TCGA-C8-A12T-01A-11R-A115-07.110608_UNC11-SN627_0103_BD0CVVABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12T TCGA-C8-A12T-01A TCGA-C8-A12T-01A-11W-A12T-09 482e1069-d3ae-47fd-a6fb-30a3f0cfdc5b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12T TCGA-C8-A12T-10A TCGA-C8-A12T-10A-01D-A10Z-02 abdf2574-c658-4d55-a4b0-7be31a930163 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12T TCGA-C8-A12T-10A TCGA-C8-A12T-10A-01D-A110-09 7ccbb62c-9382-43ef-ba5f-3f81d0074e07 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12T TCGA-C8-A12T-10A TCGA-C8-A12T-10A-01D-A110-09 7ccbb62c-9382-43ef-ba5f-3f81d0074e07 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12T TCGA-C8-A12T-10A TCGA-C8-A12T-10A-01D-A113-01 bba3b456-8236-47bc-b90b-6d5aac69fc59 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12T TCGA-C8-A12T-10A TCGA-C8-A12T-10A-01D-A113-01 bba3b456-8236-47bc-b90b-6d5aac69fc59 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F04_735226.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A12T TCGA-C8-A12T-10A TCGA-C8-A12T-10A-01D-A113-01 bba3b456-8236-47bc-b90b-6d5aac69fc59 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F04_735226.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12T TCGA-C8-A12T-10A TCGA-C8-A12T-10A-01D-A113-01 bba3b456-8236-47bc-b90b-6d5aac69fc59 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F04_735226.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12T TCGA-C8-A12T-10A TCGA-C8-A12T-10A-01D-A113-01 bba3b456-8236-47bc-b90b-6d5aac69fc59 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F04_735226.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12T TCGA-C8-A12T-10A TCGA-C8-A12T-10A-01D-A113-01 bba3b456-8236-47bc-b90b-6d5aac69fc59 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F04_735226.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12T TCGA-C8-A12T-10A TCGA-C8-A12T-10A-01D-A113-01 bba3b456-8236-47bc-b90b-6d5aac69fc59 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F04_735226.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12T TCGA-C8-A12T-10A TCGA-C8-A12T-10A-01D-A113-01 bba3b456-8236-47bc-b90b-6d5aac69fc59 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F04_735226.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12T TCGA-C8-A12T-10A TCGA-C8-A12T-10A-01D-A113-01 bba3b456-8236-47bc-b90b-6d5aac69fc59 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F04_735226.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A12T TCGA-C8-A12T-10A TCGA-C8-A12T-10A-01W-A12U-09 15b31d5f-869a-4652-bcef-43500bc725d4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11D-A10X-02 68233e7f-d038-4e7d-a230-30e24fe63b34 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11D-A10Y-09 444a1ef9-819a-41dc-baef-22057225efcd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11D-A10Y-09 444a1ef9-819a-41dc-baef-22057225efcd Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11D-A111-01 ad305034-cc87-4557-9031-a50710646810 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11D-A111-01 ad305034-cc87-4557-9031-a50710646810 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H03_735338.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11D-A111-01 ad305034-cc87-4557-9031-a50710646810 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H03_735338.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11D-A111-01 ad305034-cc87-4557-9031-a50710646810 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H03_735338.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11D-A111-01 ad305034-cc87-4557-9031-a50710646810 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H03_735338.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11D-A111-01 ad305034-cc87-4557-9031-a50710646810 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H03_735338.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11D-A111-01 ad305034-cc87-4557-9031-a50710646810 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H03_735338.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11D-A111-01 ad305034-cc87-4557-9031-a50710646810 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H03_735338.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11D-A111-01 ad305034-cc87-4557-9031-a50710646810 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H03_735338.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11D-A112-05 60e6ff8d-9e08-4eb8-83b4-d163322205ab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11D-A112-05 60e6ff8d-9e08-4eb8-83b4-d163322205ab DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-C8-A12U-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11D-A112-05 60e6ff8d-9e08-4eb8-83b4-d163322205ab DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-C8-A12U-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11D-A112-05 60e6ff8d-9e08-4eb8-83b4-d163322205ab DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-C8-A12U-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11R-A114-13 47a71d44-23e5-4f19-a69d-d7d081c32d67 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11R-A114-13 47a71d44-23e5-4f19-a69d-d7d081c32d67 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A12U-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11R-A114-13 47a71d44-23e5-4f19-a69d-d7d081c32d67 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A12U-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11R-A115-07 803bb42f-e0f2-44b6-aebb-8f956646ecc7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11R-A115-07 803bb42f-e0f2-44b6-aebb-8f956646ecc7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012776_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11R-A115-07 803bb42f-e0f2-44b6-aebb-8f956646ecc7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012776_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11R-A115-07 803bb42f-e0f2-44b6-aebb-8f956646ecc7 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012776_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11R-A115-07 803bb42f-e0f2-44b6-aebb-8f956646ecc7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_410948.TCGA-C8-A12U-01A-11R-A115-07.110607_UNC14-SN744_0124_AD0CVCABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11R-A115-07 803bb42f-e0f2-44b6-aebb-8f956646ecc7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_410968.TCGA-C8-A12U-01A-11R-A115-07.110607_UNC14-SN744_0124_AD0CVCABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11R-A115-07 803bb42f-e0f2-44b6-aebb-8f956646ecc7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_411009.TCGA-C8-A12U-01A-11R-A115-07.110607_UNC14-SN744_0124_AD0CVCABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12U TCGA-C8-A12U-01A TCGA-C8-A12U-01A-11W-A12T-09 a85520a2-2849-4728-87f8-65c81bc1a046 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12U TCGA-C8-A12U-10A TCGA-C8-A12U-10A-01D-A10Z-02 f40559b5-9722-46fe-86b4-4b7c2cacf002 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12U TCGA-C8-A12U-10A TCGA-C8-A12U-10A-01D-A110-09 e7b0ba1b-04c8-48f1-ba7d-844ae3f70916 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12U TCGA-C8-A12U-10A TCGA-C8-A12U-10A-01D-A110-09 e7b0ba1b-04c8-48f1-ba7d-844ae3f70916 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12U TCGA-C8-A12U-10A TCGA-C8-A12U-10A-01D-A113-01 f384a543-08d1-46ba-ad4d-084943ad57b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12U TCGA-C8-A12U-10A TCGA-C8-A12U-10A-01W-A12U-09 9f4d6a68-9cc8-4b89-8fe9-04376f76b1d5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12U.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11D-A10X-02 9cf16a79-b5bf-47a7-b81e-a10be71fc967 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11D-A10Y-09 b8728982-8254-4aa8-baa5-aaeb6d852260 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11D-A10Y-09 b8728982-8254-4aa8-baa5-aaeb6d852260 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11D-A111-01 84a2d172-c9f4-4ce9-8ee8-6ec6b5d4a747 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11D-A111-01 84a2d172-c9f4-4ce9-8ee8-6ec6b5d4a747 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H04_735322.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11D-A111-01 84a2d172-c9f4-4ce9-8ee8-6ec6b5d4a747 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H04_735322.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11D-A111-01 84a2d172-c9f4-4ce9-8ee8-6ec6b5d4a747 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H04_735322.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11D-A111-01 84a2d172-c9f4-4ce9-8ee8-6ec6b5d4a747 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H04_735322.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11D-A111-01 84a2d172-c9f4-4ce9-8ee8-6ec6b5d4a747 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H04_735322.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11D-A111-01 84a2d172-c9f4-4ce9-8ee8-6ec6b5d4a747 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H04_735322.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11D-A111-01 84a2d172-c9f4-4ce9-8ee8-6ec6b5d4a747 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H04_735322.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11D-A111-01 84a2d172-c9f4-4ce9-8ee8-6ec6b5d4a747 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H04_735322.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11D-A112-05 1313d677-e133-4025-a932-f32798ff034c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11D-A112-05 1313d677-e133-4025-a932-f32798ff034c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-C8-A12V-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11D-A112-05 1313d677-e133-4025-a932-f32798ff034c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-C8-A12V-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11D-A112-05 1313d677-e133-4025-a932-f32798ff034c DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-C8-A12V-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11R-A114-13 f89fdc6c-5fff-4061-89a6-2c68b0cdde24 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11R-A114-13 f89fdc6c-5fff-4061-89a6-2c68b0cdde24 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A12V-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11R-A114-13 f89fdc6c-5fff-4061-89a6-2c68b0cdde24 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A12V-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11R-A115-07 b12c9095-55c7-4add-9e22-3d65eeef2040 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11R-A115-07 b12c9095-55c7-4add-9e22-3d65eeef2040 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012790_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11R-A115-07 b12c9095-55c7-4add-9e22-3d65eeef2040 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012790_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11R-A115-07 b12c9095-55c7-4add-9e22-3d65eeef2040 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012790_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11R-A115-07 b12c9095-55c7-4add-9e22-3d65eeef2040 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420756.TCGA-C8-A12V-01A-11R-A115-07.110608_SN254_0230_AC03JGABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11R-A115-07 b12c9095-55c7-4add-9e22-3d65eeef2040 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420760.TCGA-C8-A12V-01A-11R-A115-07.110608_SN254_0230_AC03JGABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11R-A115-07 b12c9095-55c7-4add-9e22-3d65eeef2040 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420828.TCGA-C8-A12V-01A-11R-A115-07.110608_SN254_0230_AC03JGABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12V TCGA-C8-A12V-01A TCGA-C8-A12V-01A-11W-A12T-09 20560c2b-65ad-49e8-8129-7040a8f51a30 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12V TCGA-C8-A12V-10A TCGA-C8-A12V-10A-01D-A10Z-02 ae8be8b4-cdd0-4cac-86aa-4cf907a98daa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12V TCGA-C8-A12V-10A TCGA-C8-A12V-10A-01D-A110-09 39fd48ad-1e61-424b-85ce-8c2883ae41b7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12V TCGA-C8-A12V-10A TCGA-C8-A12V-10A-01D-A110-09 39fd48ad-1e61-424b-85ce-8c2883ae41b7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12V TCGA-C8-A12V-10A TCGA-C8-A12V-10A-01D-A113-01 b500550e-6978-4c68-bc3c-b806ac4bc459 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12V TCGA-C8-A12V-10A TCGA-C8-A12V-10A-01D-A113-01 b500550e-6978-4c68-bc3c-b806ac4bc459 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A11_735342.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A12V TCGA-C8-A12V-10A TCGA-C8-A12V-10A-01D-A113-01 b500550e-6978-4c68-bc3c-b806ac4bc459 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A11_735342.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12V TCGA-C8-A12V-10A TCGA-C8-A12V-10A-01D-A113-01 b500550e-6978-4c68-bc3c-b806ac4bc459 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A11_735342.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12V TCGA-C8-A12V-10A TCGA-C8-A12V-10A-01D-A113-01 b500550e-6978-4c68-bc3c-b806ac4bc459 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A11_735342.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12V TCGA-C8-A12V-10A TCGA-C8-A12V-10A-01D-A113-01 b500550e-6978-4c68-bc3c-b806ac4bc459 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A11_735342.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12V TCGA-C8-A12V-10A TCGA-C8-A12V-10A-01D-A113-01 b500550e-6978-4c68-bc3c-b806ac4bc459 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A11_735342.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12V TCGA-C8-A12V-10A TCGA-C8-A12V-10A-01D-A113-01 b500550e-6978-4c68-bc3c-b806ac4bc459 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A11_735342.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12V TCGA-C8-A12V-10A TCGA-C8-A12V-10A-01D-A113-01 b500550e-6978-4c68-bc3c-b806ac4bc459 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A11_735342.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A12V TCGA-C8-A12V-10A TCGA-C8-A12V-10A-01W-A12U-09 7591b648-0052-4440-a6d0-908c23e267ce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11D-A10X-02 3a175822-0d3b-436d-b2be-89861e0160a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11D-A10Y-09 5fb924d9-3201-491b-90b1-fe8a6320b2d7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11D-A10Y-09 5fb924d9-3201-491b-90b1-fe8a6320b2d7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11D-A111-01 b24caa7b-337e-43d0-9908-2815f24dd7b5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11D-A111-01 b24caa7b-337e-43d0-9908-2815f24dd7b5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H07_735294.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11D-A111-01 b24caa7b-337e-43d0-9908-2815f24dd7b5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H07_735294.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11D-A111-01 b24caa7b-337e-43d0-9908-2815f24dd7b5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H07_735294.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11D-A111-01 b24caa7b-337e-43d0-9908-2815f24dd7b5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H07_735294.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11D-A111-01 b24caa7b-337e-43d0-9908-2815f24dd7b5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H07_735294.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11D-A111-01 b24caa7b-337e-43d0-9908-2815f24dd7b5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H07_735294.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11D-A111-01 b24caa7b-337e-43d0-9908-2815f24dd7b5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H07_735294.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11D-A111-01 b24caa7b-337e-43d0-9908-2815f24dd7b5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H07_735294.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11D-A112-05 2950c4a6-f746-47cc-9077-42e0ddaa0ef3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11D-A112-05 2950c4a6-f746-47cc-9077-42e0ddaa0ef3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-C8-A12W-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11D-A112-05 2950c4a6-f746-47cc-9077-42e0ddaa0ef3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-C8-A12W-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11D-A112-05 2950c4a6-f746-47cc-9077-42e0ddaa0ef3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-C8-A12W-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11R-A114-13 da0e84f8-9785-441f-babb-c2d0adb948c6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11R-A114-13 da0e84f8-9785-441f-babb-c2d0adb948c6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A12W-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11R-A114-13 da0e84f8-9785-441f-babb-c2d0adb948c6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A12W-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11R-A115-07 24e6e8f5-3caa-46f0-8915-7bd09f0736f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11R-A115-07 24e6e8f5-3caa-46f0-8915-7bd09f0736f9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012802_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11R-A115-07 24e6e8f5-3caa-46f0-8915-7bd09f0736f9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012802_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11R-A115-07 24e6e8f5-3caa-46f0-8915-7bd09f0736f9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012802_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11R-A115-07 24e6e8f5-3caa-46f0-8915-7bd09f0736f9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420768.TCGA-C8-A12W-01A-11R-A115-07.110608_SN254_0230_AC03JGABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11R-A115-07 24e6e8f5-3caa-46f0-8915-7bd09f0736f9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420772.TCGA-C8-A12W-01A-11R-A115-07.110608_SN254_0230_AC03JGABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11R-A115-07 24e6e8f5-3caa-46f0-8915-7bd09f0736f9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420832.TCGA-C8-A12W-01A-11R-A115-07.110608_SN254_0230_AC03JGABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12W TCGA-C8-A12W-01A TCGA-C8-A12W-01A-11W-A12T-09 4e1f4c03-49a1-40e2-8cd3-a932fce7191c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12W TCGA-C8-A12W-10A TCGA-C8-A12W-10A-01D-A10Z-02 168c960e-b4cf-469b-b6dd-5cedd7aa1b59 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12W TCGA-C8-A12W-10A TCGA-C8-A12W-10A-01D-A110-09 75395500-05e2-4acf-a25b-bd7743b389bc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12W TCGA-C8-A12W-10A TCGA-C8-A12W-10A-01D-A110-09 75395500-05e2-4acf-a25b-bd7743b389bc Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12W TCGA-C8-A12W-10A TCGA-C8-A12W-10A-01D-A113-01 be04613f-d009-433c-ad02-9d4ddc00003f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12W TCGA-C8-A12W-10A TCGA-C8-A12W-10A-01D-A113-01 be04613f-d009-433c-ad02-9d4ddc00003f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F07_735358.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A12W TCGA-C8-A12W-10A TCGA-C8-A12W-10A-01D-A113-01 be04613f-d009-433c-ad02-9d4ddc00003f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F07_735358.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12W TCGA-C8-A12W-10A TCGA-C8-A12W-10A-01D-A113-01 be04613f-d009-433c-ad02-9d4ddc00003f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F07_735358.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12W TCGA-C8-A12W-10A TCGA-C8-A12W-10A-01D-A113-01 be04613f-d009-433c-ad02-9d4ddc00003f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F07_735358.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12W TCGA-C8-A12W-10A TCGA-C8-A12W-10A-01D-A113-01 be04613f-d009-433c-ad02-9d4ddc00003f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F07_735358.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12W TCGA-C8-A12W-10A TCGA-C8-A12W-10A-01D-A113-01 be04613f-d009-433c-ad02-9d4ddc00003f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F07_735358.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12W TCGA-C8-A12W-10A TCGA-C8-A12W-10A-01D-A113-01 be04613f-d009-433c-ad02-9d4ddc00003f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F07_735358.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12W TCGA-C8-A12W-10A TCGA-C8-A12W-10A-01D-A113-01 be04613f-d009-433c-ad02-9d4ddc00003f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F07_735358.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A12W TCGA-C8-A12W-10A TCGA-C8-A12W-10A-01W-A12U-09 28eaaec6-0da7-4541-8626-97547c67bf88 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12X TCGA-C8-A12X-01A TCGA-C8-A12X-01A-11D-A10X-02 e67023d6-19c2-435d-b4fc-0ca56e020b25 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12X TCGA-C8-A12X-01A TCGA-C8-A12X-01A-11D-A10Y-09 f133a2e3-73a2-40b8-855f-e819e4d11630 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12X TCGA-C8-A12X-01A TCGA-C8-A12X-01A-11D-A10Y-09 f133a2e3-73a2-40b8-855f-e819e4d11630 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12X TCGA-C8-A12X-01A TCGA-C8-A12X-01A-11D-A111-01 a32074a1-de53-4200-a933-540029a37372 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12X TCGA-C8-A12X-01A TCGA-C8-A12X-01A-11D-A111-01 a32074a1-de53-4200-a933-540029a37372 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C12_735214.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A12X TCGA-C8-A12X-01A TCGA-C8-A12X-01A-11D-A111-01 a32074a1-de53-4200-a933-540029a37372 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C12_735214.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12X TCGA-C8-A12X-01A TCGA-C8-A12X-01A-11D-A111-01 a32074a1-de53-4200-a933-540029a37372 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C12_735214.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12X TCGA-C8-A12X-01A TCGA-C8-A12X-01A-11D-A111-01 a32074a1-de53-4200-a933-540029a37372 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C12_735214.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12X TCGA-C8-A12X-01A TCGA-C8-A12X-01A-11D-A111-01 a32074a1-de53-4200-a933-540029a37372 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C12_735214.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12X TCGA-C8-A12X-01A TCGA-C8-A12X-01A-11D-A111-01 a32074a1-de53-4200-a933-540029a37372 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C12_735214.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12X TCGA-C8-A12X-01A TCGA-C8-A12X-01A-11D-A111-01 a32074a1-de53-4200-a933-540029a37372 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C12_735214.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12X TCGA-C8-A12X-01A TCGA-C8-A12X-01A-11D-A111-01 a32074a1-de53-4200-a933-540029a37372 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C12_735214.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A12X TCGA-C8-A12X-01A TCGA-C8-A12X-01A-11D-A112-05 87af9ebc-f7d0-43b2-852d-09b5a6e2c6a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12X TCGA-C8-A12X-01A TCGA-C8-A12X-01A-11D-A112-05 87af9ebc-f7d0-43b2-852d-09b5a6e2c6a6 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-C8-A12X-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-C8-A12X TCGA-C8-A12X-01A TCGA-C8-A12X-01A-11D-A112-05 87af9ebc-f7d0-43b2-852d-09b5a6e2c6a6 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-C8-A12X-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-C8-A12X TCGA-C8-A12X-01A TCGA-C8-A12X-01A-11D-A112-05 87af9ebc-f7d0-43b2-852d-09b5a6e2c6a6 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-C8-A12X-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-C8-A12X TCGA-C8-A12X-01A TCGA-C8-A12X-01A-11R-A114-13 63605d97-a8ef-4f4a-8926-37f7b70e0913 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12X TCGA-C8-A12X-01A TCGA-C8-A12X-01A-11R-A114-13 63605d97-a8ef-4f4a-8926-37f7b70e0913 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A12X-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A12X TCGA-C8-A12X-01A TCGA-C8-A12X-01A-11R-A114-13 63605d97-a8ef-4f4a-8926-37f7b70e0913 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A12X-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A12X TCGA-C8-A12X-01A TCGA-C8-A12X-01A-11R-A115-07 2efa4fd0-1c0b-49c8-a11f-606d8618ec97 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12X TCGA-C8-A12X-01A TCGA-C8-A12X-01A-11R-A115-07 2efa4fd0-1c0b-49c8-a11f-606d8618ec97 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012814_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-C8-A12X TCGA-C8-A12X-01A TCGA-C8-A12X-01A-11R-A115-07 2efa4fd0-1c0b-49c8-a11f-606d8618ec97 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012814_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-C8-A12X TCGA-C8-A12X-01A TCGA-C8-A12X-01A-11R-A115-07 2efa4fd0-1c0b-49c8-a11f-606d8618ec97 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012814_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-C8-A12X TCGA-C8-A12X-01A TCGA-C8-A12X-01A-11W-A12T-09 712feba4-8561-4373-84db-e5796b28771f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12X TCGA-C8-A12X-10A TCGA-C8-A12X-10A-01D-A10Z-02 91239d6f-69aa-4b54-bb06-432e10462d61 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12X TCGA-C8-A12X-10A TCGA-C8-A12X-10A-01D-A110-09 8a015260-3f5f-4130-adb3-d15881d67e08 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12X TCGA-C8-A12X-10A TCGA-C8-A12X-10A-01D-A110-09 8a015260-3f5f-4130-adb3-d15881d67e08 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12X TCGA-C8-A12X-10A TCGA-C8-A12X-10A-01D-A113-01 a1b7ba28-602e-42ba-9f70-99812383eb90 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12X TCGA-C8-A12X-10A TCGA-C8-A12X-10A-01D-A113-01 a1b7ba28-602e-42ba-9f70-99812383eb90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E10_735212.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A12X TCGA-C8-A12X-10A TCGA-C8-A12X-10A-01D-A113-01 a1b7ba28-602e-42ba-9f70-99812383eb90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E10_735212.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12X TCGA-C8-A12X-10A TCGA-C8-A12X-10A-01D-A113-01 a1b7ba28-602e-42ba-9f70-99812383eb90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E10_735212.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12X TCGA-C8-A12X-10A TCGA-C8-A12X-10A-01D-A113-01 a1b7ba28-602e-42ba-9f70-99812383eb90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E10_735212.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12X TCGA-C8-A12X-10A TCGA-C8-A12X-10A-01D-A113-01 a1b7ba28-602e-42ba-9f70-99812383eb90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E10_735212.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12X TCGA-C8-A12X-10A TCGA-C8-A12X-10A-01D-A113-01 a1b7ba28-602e-42ba-9f70-99812383eb90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E10_735212.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12X TCGA-C8-A12X-10A TCGA-C8-A12X-10A-01D-A113-01 a1b7ba28-602e-42ba-9f70-99812383eb90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E10_735212.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12X TCGA-C8-A12X-10A TCGA-C8-A12X-10A-01D-A113-01 a1b7ba28-602e-42ba-9f70-99812383eb90 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E10_735212.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A12X TCGA-C8-A12X-10A TCGA-C8-A12X-10A-01W-A12U-09 2c020fe2-3227-4724-86e3-047a4bede95c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11D-A129-02 eb69969f-0874-4447-a45c-c4d5154c5350 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11D-A12A-01 635288ea-41cf-4d68-9295-19044e6c8fda Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11D-A12A-01 635288ea-41cf-4d68-9295-19044e6c8fda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H02_741436.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11D-A12A-01 635288ea-41cf-4d68-9295-19044e6c8fda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H02_741436.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11D-A12A-01 635288ea-41cf-4d68-9295-19044e6c8fda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H02_741436.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11D-A12A-01 635288ea-41cf-4d68-9295-19044e6c8fda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H02_741436.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11D-A12A-01 635288ea-41cf-4d68-9295-19044e6c8fda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H02_741436.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11D-A12A-01 635288ea-41cf-4d68-9295-19044e6c8fda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H02_741436.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11D-A12A-01 635288ea-41cf-4d68-9295-19044e6c8fda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H02_741436.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11D-A12A-01 635288ea-41cf-4d68-9295-19044e6c8fda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H02_741436.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11D-A12B-09 d5c0a1a0-3d38-497b-9f47-107f06659cb1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11D-A12B-09 d5c0a1a0-3d38-497b-9f47-107f06659cb1 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11D-A12E-05 2ea2f619-2137-433c-8ebc-67b71144a551 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11D-A12E-05 2ea2f619-2137-433c-8ebc-67b71144a551 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-C8-A12Y-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11D-A12E-05 2ea2f619-2137-433c-8ebc-67b71144a551 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-C8-A12Y-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11D-A12E-05 2ea2f619-2137-433c-8ebc-67b71144a551 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-C8-A12Y-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11R-A12C-13 c3ade0b1-df9d-4d29-85a2-ef7c5189b50a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11R-A12C-13 c3ade0b1-df9d-4d29-85a2-ef7c5189b50a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A12Y-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11R-A12C-13 c3ade0b1-df9d-4d29-85a2-ef7c5189b50a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A12Y-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11R-A12D-07 ef42155a-112e-48fe-b52a-a99ebcd5f7f5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11R-A12D-07 ef42155a-112e-48fe-b52a-a99ebcd5f7f5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012916_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11R-A12D-07 ef42155a-112e-48fe-b52a-a99ebcd5f7f5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012916_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11R-A12D-07 ef42155a-112e-48fe-b52a-a99ebcd5f7f5 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012916_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11R-A12D-07 ef42155a-112e-48fe-b52a-a99ebcd5f7f5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_705884.TCGA-C8-A12Y-01A-11R-A12D-07.110714_UNC13-SN749_0083_BD0DLNABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11R-A12D-07 ef42155a-112e-48fe-b52a-a99ebcd5f7f5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_705958.TCGA-C8-A12Y-01A-11R-A12D-07.110714_UNC13-SN749_0083_BD0DLNABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11R-A12D-07 ef42155a-112e-48fe-b52a-a99ebcd5f7f5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_705998.TCGA-C8-A12Y-01A-11R-A12D-07.110714_UNC13-SN749_0083_BD0DLNABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-01A TCGA-C8-A12Y-01A-11W-A12S-09 30f8f34c-f41d-4f8f-a791-e5853f73c0ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-10A TCGA-C8-A12Y-10A-01D-A129-02 45e8f423-9933-4f9e-820f-76abb1f69848 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-10A TCGA-C8-A12Y-10A-01D-A12A-01 6b1b2e19-3d5a-4356-ae46-deb86bc90a84 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-10A TCGA-C8-A12Y-10A-01D-A12A-01 6b1b2e19-3d5a-4356-ae46-deb86bc90a84 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A02_741404.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-C8-A12Y TCGA-C8-A12Y-10A TCGA-C8-A12Y-10A-01D-A12A-01 6b1b2e19-3d5a-4356-ae46-deb86bc90a84 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A02_741404.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-10A TCGA-C8-A12Y-10A-01D-A12A-01 6b1b2e19-3d5a-4356-ae46-deb86bc90a84 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A02_741404.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-10A TCGA-C8-A12Y-10A-01D-A12A-01 6b1b2e19-3d5a-4356-ae46-deb86bc90a84 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A02_741404.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-10A TCGA-C8-A12Y-10A-01D-A12A-01 6b1b2e19-3d5a-4356-ae46-deb86bc90a84 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A02_741404.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-10A TCGA-C8-A12Y-10A-01D-A12A-01 6b1b2e19-3d5a-4356-ae46-deb86bc90a84 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A02_741404.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-10A TCGA-C8-A12Y-10A-01D-A12A-01 6b1b2e19-3d5a-4356-ae46-deb86bc90a84 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A02_741404.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-10A TCGA-C8-A12Y-10A-01D-A12A-01 6b1b2e19-3d5a-4356-ae46-deb86bc90a84 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A02_741404.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-10A TCGA-C8-A12Y-10A-01D-A12B-09 9fdfe86f-477c-410d-8258-c253254ffe13 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-10A TCGA-C8-A12Y-10A-01D-A12B-09 9fdfe86f-477c-410d-8258-c253254ffe13 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12Y TCGA-C8-A12Y-10A TCGA-C8-A12Y-10A-01W-A12S-09 57ae6b48-ae46-4ae3-9076-69b3ba71e8ce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11D-A10X-02 295996bc-f2bd-4804-8b16-763572ed35a7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11D-A10Y-09 ae68cac5-e561-4094-98fa-2303cdaa6dbb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11D-A10Y-09 ae68cac5-e561-4094-98fa-2303cdaa6dbb Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11D-A111-01 6d730c4d-2c62-4214-aa35-f40126e65560 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11D-A111-01 6d730c4d-2c62-4214-aa35-f40126e65560 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G10_735244.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11D-A111-01 6d730c4d-2c62-4214-aa35-f40126e65560 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G10_735244.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11D-A111-01 6d730c4d-2c62-4214-aa35-f40126e65560 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G10_735244.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11D-A111-01 6d730c4d-2c62-4214-aa35-f40126e65560 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G10_735244.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11D-A111-01 6d730c4d-2c62-4214-aa35-f40126e65560 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G10_735244.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11D-A111-01 6d730c4d-2c62-4214-aa35-f40126e65560 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G10_735244.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11D-A111-01 6d730c4d-2c62-4214-aa35-f40126e65560 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G10_735244.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11D-A111-01 6d730c4d-2c62-4214-aa35-f40126e65560 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G10_735244.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11D-A112-05 d1074588-bd51-4d39-9cb2-e5e6a622f9b5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11D-A112-05 d1074588-bd51-4d39-9cb2-e5e6a622f9b5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-C8-A12Z-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11D-A112-05 d1074588-bd51-4d39-9cb2-e5e6a622f9b5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-C8-A12Z-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11D-A112-05 d1074588-bd51-4d39-9cb2-e5e6a622f9b5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-C8-A12Z-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11R-A114-13 74d155b4-3527-4b8d-b050-21670f3b6027 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11R-A114-13 74d155b4-3527-4b8d-b050-21670f3b6027 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A12Z-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11R-A114-13 74d155b4-3527-4b8d-b050-21670f3b6027 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A12Z-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11R-A115-07 4018d26c-0ce0-4c5a-9ce4-200bb4273349 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11R-A115-07 4018d26c-0ce0-4c5a-9ce4-200bb4273349 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012825_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11R-A115-07 4018d26c-0ce0-4c5a-9ce4-200bb4273349 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012825_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11R-A115-07 4018d26c-0ce0-4c5a-9ce4-200bb4273349 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012825_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11R-A115-07 4018d26c-0ce0-4c5a-9ce4-200bb4273349 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421201.TCGA-C8-A12Z-01A-11R-A115-07.110527_UNC10-SN254_0225_BD0CVWABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11R-A115-07 4018d26c-0ce0-4c5a-9ce4-200bb4273349 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421206.TCGA-C8-A12Z-01A-11R-A115-07.110527_UNC10-SN254_0225_BD0CVWABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11R-A115-07 4018d26c-0ce0-4c5a-9ce4-200bb4273349 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421215.TCGA-C8-A12Z-01A-11R-A115-07.110527_UNC10-SN254_0225_BD0CVWABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-01A TCGA-C8-A12Z-01A-11W-A12T-09 ad83443d-4a7e-4d0d-96e4-7c2f8b5eda4b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-10A TCGA-C8-A12Z-10A-01D-A10Z-02 cf4bf84a-c678-426d-8a94-801ab47a45ad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-10A TCGA-C8-A12Z-10A-01D-A110-09 812e038c-91bd-4e32-bf6b-99922a18b5c0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-10A TCGA-C8-A12Z-10A-01D-A110-09 812e038c-91bd-4e32-bf6b-99922a18b5c0 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-10A TCGA-C8-A12Z-10A-01D-A113-01 d2b89115-eeae-492e-a6a4-68937af0d071 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-10A TCGA-C8-A12Z-10A-01D-A113-01 d2b89115-eeae-492e-a6a4-68937af0d071 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E11_735328.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A12Z TCGA-C8-A12Z-10A TCGA-C8-A12Z-10A-01D-A113-01 d2b89115-eeae-492e-a6a4-68937af0d071 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E11_735328.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-10A TCGA-C8-A12Z-10A-01D-A113-01 d2b89115-eeae-492e-a6a4-68937af0d071 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E11_735328.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-10A TCGA-C8-A12Z-10A-01D-A113-01 d2b89115-eeae-492e-a6a4-68937af0d071 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E11_735328.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-10A TCGA-C8-A12Z-10A-01D-A113-01 d2b89115-eeae-492e-a6a4-68937af0d071 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E11_735328.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-10A TCGA-C8-A12Z-10A-01D-A113-01 d2b89115-eeae-492e-a6a4-68937af0d071 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E11_735328.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-10A TCGA-C8-A12Z-10A-01D-A113-01 d2b89115-eeae-492e-a6a4-68937af0d071 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E11_735328.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-10A TCGA-C8-A12Z-10A-01D-A113-01 d2b89115-eeae-492e-a6a4-68937af0d071 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E11_735328.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A12Z TCGA-C8-A12Z-10A TCGA-C8-A12Z-10A-01W-A12U-09 2f6b247d-c256-4a3a-a19d-d9ae2c91938f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A12Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31D-A10X-02 dabcdc28-216c-4e2a-9eb6-a6364a824a94 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A130.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31D-A10Y-09 da70101d-10c2-47ab-bce1-7757dcbb08a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A130.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31D-A10Y-09 da70101d-10c2-47ab-bce1-7757dcbb08a2 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31D-A111-01 b3b38912-25f6-45ca-9ee5-a5a4a299b5ce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A130.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31D-A111-01 b3b38912-25f6-45ca-9ee5-a5a4a299b5ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G11_735302.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31D-A111-01 b3b38912-25f6-45ca-9ee5-a5a4a299b5ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G11_735302.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31D-A111-01 b3b38912-25f6-45ca-9ee5-a5a4a299b5ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G11_735302.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31D-A111-01 b3b38912-25f6-45ca-9ee5-a5a4a299b5ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G11_735302.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31D-A111-01 b3b38912-25f6-45ca-9ee5-a5a4a299b5ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G11_735302.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31D-A111-01 b3b38912-25f6-45ca-9ee5-a5a4a299b5ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G11_735302.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31D-A111-01 b3b38912-25f6-45ca-9ee5-a5a4a299b5ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G11_735302.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31D-A111-01 b3b38912-25f6-45ca-9ee5-a5a4a299b5ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G11_735302.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31D-A112-05 be46943f-d141-45d0-ade2-5c3d9496396a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A130.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31D-A112-05 be46943f-d141-45d0-ade2-5c3d9496396a DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-C8-A130-01A-31D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31D-A112-05 be46943f-d141-45d0-ade2-5c3d9496396a DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-C8-A130-01A-31D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31D-A112-05 be46943f-d141-45d0-ade2-5c3d9496396a DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-C8-A130-01A-31D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31D-A19H-09 27f87d1e-2c32-4beb-9677-62f7a286673d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A130.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31R-A114-13 22531fea-431d-4d39-bcc1-625139c64e2e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A130.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31R-A114-13 22531fea-431d-4d39-bcc1-625139c64e2e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A130-01A-31R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31R-A114-13 22531fea-431d-4d39-bcc1-625139c64e2e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A130-01A-31R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31R-A115-07 697dfcbf-0c6b-4cae-b851-d46dd6be42c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A130.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31R-A115-07 697dfcbf-0c6b-4cae-b851-d46dd6be42c9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012836_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31R-A115-07 697dfcbf-0c6b-4cae-b851-d46dd6be42c9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012836_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31R-A115-07 697dfcbf-0c6b-4cae-b851-d46dd6be42c9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012836_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31R-A115-07 697dfcbf-0c6b-4cae-b851-d46dd6be42c9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441948.TCGA-C8-A130-01A-31R-A115-07.110628_UNC10-SN254_0238_AC03J5ABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31R-A115-07 697dfcbf-0c6b-4cae-b851-d46dd6be42c9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441950.TCGA-C8-A130-01A-31R-A115-07.110628_UNC10-SN254_0238_AC03J5ABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31R-A115-07 697dfcbf-0c6b-4cae-b851-d46dd6be42c9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_442135.TCGA-C8-A130-01A-31R-A115-07.110628_UNC10-SN254_0238_AC03J5ABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A130 TCGA-C8-A130-01A TCGA-C8-A130-01A-31W-A12T-09 7169fc15-1693-4c08-a6b6-d8ab0b571e00 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A130.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A130 TCGA-C8-A130-10A TCGA-C8-A130-10A-01D-A10Z-02 cd73bbe9-31a4-44d7-b90c-84e8c6f17057 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A130.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A130 TCGA-C8-A130-10A TCGA-C8-A130-10A-01D-A110-09 b5de4094-f708-472f-aeb6-a7ed61223af5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A130.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A130 TCGA-C8-A130-10A TCGA-C8-A130-10A-01D-A110-09 b5de4094-f708-472f-aeb6-a7ed61223af5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A130 TCGA-C8-A130-10A TCGA-C8-A130-10A-01D-A113-01 0c630f94-0489-41b6-9744-5bb19f60341a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A130.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A130 TCGA-C8-A130-10A TCGA-C8-A130-10A-01D-A19H-09 d141e42e-aa3b-46ed-815f-3192b1959bf4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A130.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A130 TCGA-C8-A130-10A TCGA-C8-A130-10A-01W-A12U-09 fa50ac34-2f53-4808-9b9c-20284b933690 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A130.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11D-A10X-02 85229596-7a0d-497e-9cb6-76b623793852 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A131.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11D-A10Y-09 df8c72f3-ca4f-4a15-8d58-976d9c796570 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A131.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11D-A10Y-09 df8c72f3-ca4f-4a15-8d58-976d9c796570 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11D-A111-01 8451e6fa-790e-4ea7-9068-520299fad8a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A131.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11D-A111-01 8451e6fa-790e-4ea7-9068-520299fad8a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G04_735388.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11D-A111-01 8451e6fa-790e-4ea7-9068-520299fad8a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G04_735388.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11D-A111-01 8451e6fa-790e-4ea7-9068-520299fad8a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G04_735388.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11D-A111-01 8451e6fa-790e-4ea7-9068-520299fad8a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G04_735388.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11D-A111-01 8451e6fa-790e-4ea7-9068-520299fad8a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G04_735388.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11D-A111-01 8451e6fa-790e-4ea7-9068-520299fad8a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G04_735388.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11D-A111-01 8451e6fa-790e-4ea7-9068-520299fad8a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G04_735388.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11D-A111-01 8451e6fa-790e-4ea7-9068-520299fad8a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G04_735388.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11D-A112-05 30f5ebce-b94a-4f42-bafe-861aa4a6f446 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A131.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11D-A112-05 30f5ebce-b94a-4f42-bafe-861aa4a6f446 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-C8-A131-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11D-A112-05 30f5ebce-b94a-4f42-bafe-861aa4a6f446 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-C8-A131-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11D-A112-05 30f5ebce-b94a-4f42-bafe-861aa4a6f446 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-C8-A131-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11R-A114-13 ef8358c5-f42e-4278-a662-312f1d401243 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A131.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11R-A114-13 ef8358c5-f42e-4278-a662-312f1d401243 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A131-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11R-A114-13 ef8358c5-f42e-4278-a662-312f1d401243 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A131-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11R-A115-07 5162ef6d-6978-4ff7-b385-a59325cefe17 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A131.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11R-A115-07 5162ef6d-6978-4ff7-b385-a59325cefe17 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012748_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11R-A115-07 5162ef6d-6978-4ff7-b385-a59325cefe17 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012748_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11R-A115-07 5162ef6d-6978-4ff7-b385-a59325cefe17 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012748_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11R-A115-07 5162ef6d-6978-4ff7-b385-a59325cefe17 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_419383.TCGA-C8-A131-01A-11R-A115-07.110608_UNC11-SN627_0103_BD0CVVABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11R-A115-07 5162ef6d-6978-4ff7-b385-a59325cefe17 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_419385.TCGA-C8-A131-01A-11R-A115-07.110608_UNC11-SN627_0103_BD0CVVABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11R-A115-07 5162ef6d-6978-4ff7-b385-a59325cefe17 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_419426.TCGA-C8-A131-01A-11R-A115-07.110608_UNC11-SN627_0103_BD0CVVABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A131 TCGA-C8-A131-01A TCGA-C8-A131-01A-11W-A12T-09 38eab063-37ed-48ad-94c1-31f0a4d2171f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A131.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A131 TCGA-C8-A131-10A TCGA-C8-A131-10A-01D-A10Z-02 a72db902-e581-409e-b75a-8c7d31c6ac1b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A131.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A131 TCGA-C8-A131-10A TCGA-C8-A131-10A-01D-A110-09 cb269dc6-19ce-4327-9c01-cb7484aa8387 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A131.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A131 TCGA-C8-A131-10A TCGA-C8-A131-10A-01D-A110-09 cb269dc6-19ce-4327-9c01-cb7484aa8387 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A131 TCGA-C8-A131-10A TCGA-C8-A131-10A-01D-A113-01 fd192b3d-a9b9-4958-bccf-dd3079bee040 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A131.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A131 TCGA-C8-A131-10A TCGA-C8-A131-10A-01D-A113-01 fd192b3d-a9b9-4958-bccf-dd3079bee040 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A05_735266.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A131 TCGA-C8-A131-10A TCGA-C8-A131-10A-01D-A113-01 fd192b3d-a9b9-4958-bccf-dd3079bee040 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A05_735266.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A131 TCGA-C8-A131-10A TCGA-C8-A131-10A-01D-A113-01 fd192b3d-a9b9-4958-bccf-dd3079bee040 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A05_735266.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A131 TCGA-C8-A131-10A TCGA-C8-A131-10A-01D-A113-01 fd192b3d-a9b9-4958-bccf-dd3079bee040 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A05_735266.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A131 TCGA-C8-A131-10A TCGA-C8-A131-10A-01D-A113-01 fd192b3d-a9b9-4958-bccf-dd3079bee040 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A05_735266.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A131 TCGA-C8-A131-10A TCGA-C8-A131-10A-01D-A113-01 fd192b3d-a9b9-4958-bccf-dd3079bee040 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A05_735266.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A131 TCGA-C8-A131-10A TCGA-C8-A131-10A-01D-A113-01 fd192b3d-a9b9-4958-bccf-dd3079bee040 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A05_735266.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A131 TCGA-C8-A131-10A TCGA-C8-A131-10A-01D-A113-01 fd192b3d-a9b9-4958-bccf-dd3079bee040 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A05_735266.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A131 TCGA-C8-A131-10A TCGA-C8-A131-10A-01W-A12U-09 2f83e7e7-d93c-44cc-88ca-47581d703037 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A131.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31D-A10X-02 cb91cbce-44a0-40d9-a43e-9d4b91864272 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A132.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31D-A10Y-09 c038ab30-af2f-4771-bf82-dcf19f32efab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A132.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31D-A10Y-09 c038ab30-af2f-4771-bf82-dcf19f32efab Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31D-A111-01 f52bfd4d-965c-4f12-9e71-7842ed116268 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A132.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31D-A111-01 f52bfd4d-965c-4f12-9e71-7842ed116268 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H02_735332.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31D-A111-01 f52bfd4d-965c-4f12-9e71-7842ed116268 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H02_735332.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31D-A111-01 f52bfd4d-965c-4f12-9e71-7842ed116268 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H02_735332.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31D-A111-01 f52bfd4d-965c-4f12-9e71-7842ed116268 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H02_735332.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31D-A111-01 f52bfd4d-965c-4f12-9e71-7842ed116268 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H02_735332.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31D-A111-01 f52bfd4d-965c-4f12-9e71-7842ed116268 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H02_735332.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31D-A111-01 f52bfd4d-965c-4f12-9e71-7842ed116268 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H02_735332.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31D-A111-01 f52bfd4d-965c-4f12-9e71-7842ed116268 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H02_735332.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31D-A112-05 11ed6c48-9a93-4d49-89d5-2f3fb26bb1cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A132.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31D-A112-05 11ed6c48-9a93-4d49-89d5-2f3fb26bb1cf DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-C8-A132-01A-31D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31D-A112-05 11ed6c48-9a93-4d49-89d5-2f3fb26bb1cf DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-C8-A132-01A-31D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31D-A112-05 11ed6c48-9a93-4d49-89d5-2f3fb26bb1cf DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-C8-A132-01A-31D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31R-A114-13 22838c67-9c7f-4a6f-aade-45da2f6edca2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A132.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31R-A114-13 22838c67-9c7f-4a6f-aade-45da2f6edca2 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A132-01A-31R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31R-A114-13 22838c67-9c7f-4a6f-aade-45da2f6edca2 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A132-01A-31R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31R-A115-07 143e8620-56cc-4b65-a2aa-d793543f6854 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A132.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31R-A115-07 143e8620-56cc-4b65-a2aa-d793543f6854 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012765_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31R-A115-07 143e8620-56cc-4b65-a2aa-d793543f6854 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012765_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31R-A115-07 143e8620-56cc-4b65-a2aa-d793543f6854 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012765_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31R-A115-07 143e8620-56cc-4b65-a2aa-d793543f6854 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_410953.TCGA-C8-A132-01A-31R-A115-07.110607_UNC14-SN744_0124_AD0CVCABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31R-A115-07 143e8620-56cc-4b65-a2aa-d793543f6854 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_410971.TCGA-C8-A132-01A-31R-A115-07.110607_UNC14-SN744_0124_AD0CVCABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31R-A115-07 143e8620-56cc-4b65-a2aa-d793543f6854 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_411026.TCGA-C8-A132-01A-31R-A115-07.110607_UNC14-SN744_0124_AD0CVCABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A132 TCGA-C8-A132-01A TCGA-C8-A132-01A-31W-A12T-09 d2f17dce-182f-4a39-a2c0-eece8a3b0d96 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A132.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A132 TCGA-C8-A132-10A TCGA-C8-A132-10A-01D-A10Z-02 649eb852-d9da-4179-b2d3-9ce9157132c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A132.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A132 TCGA-C8-A132-10A TCGA-C8-A132-10A-01D-A110-09 57984eb7-bce9-4b03-8aa3-014ee4014165 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A132.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A132 TCGA-C8-A132-10A TCGA-C8-A132-10A-01D-A110-09 57984eb7-bce9-4b03-8aa3-014ee4014165 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A132 TCGA-C8-A132-10A TCGA-C8-A132-10A-01D-A113-01 7c82b0e0-40fc-4066-be3f-7df62a3a330b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A132.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A132 TCGA-C8-A132-10A TCGA-C8-A132-10A-01W-A12U-09 ac62fd9e-8d68-4936-bb2b-e59beb8b168e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A132.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32D-A129-02 172e38f8-604b-4caf-b184-07390c254d88 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-C8-A133.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32D-A12A-01 de88f4c3-0824-4ce2-8d1c-c6155db0f967 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-C8-A133.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32D-A12A-01 de88f4c3-0824-4ce2-8d1c-c6155db0f967 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A08_741564.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32D-A12A-01 de88f4c3-0824-4ce2-8d1c-c6155db0f967 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A08_741564.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32D-A12A-01 de88f4c3-0824-4ce2-8d1c-c6155db0f967 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A08_741564.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32D-A12A-01 de88f4c3-0824-4ce2-8d1c-c6155db0f967 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A08_741564.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32D-A12A-01 de88f4c3-0824-4ce2-8d1c-c6155db0f967 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A08_741564.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32D-A12A-01 de88f4c3-0824-4ce2-8d1c-c6155db0f967 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A08_741564.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32D-A12A-01 de88f4c3-0824-4ce2-8d1c-c6155db0f967 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A08_741564.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32D-A12A-01 de88f4c3-0824-4ce2-8d1c-c6155db0f967 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A08_741564.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32D-A12B-09 641e848d-e3e2-46a7-ad42-5e5672639816 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-C8-A133.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32D-A12B-09 641e848d-e3e2-46a7-ad42-5e5672639816 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32D-A12E-05 27b897ae-c5db-4dc7-919b-97c9e845415e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-C8-A133.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32D-A12E-05 27b897ae-c5db-4dc7-919b-97c9e845415e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-C8-A133-01A-32D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32D-A12E-05 27b897ae-c5db-4dc7-919b-97c9e845415e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-C8-A133-01A-32D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32D-A12E-05 27b897ae-c5db-4dc7-919b-97c9e845415e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-C8-A133-01A-32D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32R-A12C-13 d6e0b531-fc38-4cc8-bac4-8730e7072bee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-C8-A133.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32R-A12C-13 d6e0b531-fc38-4cc8-bac4-8730e7072bee miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A133-01A-32R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32R-A12C-13 d6e0b531-fc38-4cc8-bac4-8730e7072bee miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A133-01A-32R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32R-A12D-07 3028d15d-698a-4a23-8a09-a79221e28a62 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-C8-A133.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32R-A12D-07 3028d15d-698a-4a23-8a09-a79221e28a62 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012922_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32R-A12D-07 3028d15d-698a-4a23-8a09-a79221e28a62 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012922_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32R-A12D-07 3028d15d-698a-4a23-8a09-a79221e28a62 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012922_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32R-A12D-07 3028d15d-698a-4a23-8a09-a79221e28a62 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_704403.TCGA-C8-A133-01A-32R-A12D-07.110714_UNC13-SN749_0083_BD0DLNABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32R-A12D-07 3028d15d-698a-4a23-8a09-a79221e28a62 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_704413.TCGA-C8-A133-01A-32R-A12D-07.110714_UNC13-SN749_0083_BD0DLNABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32R-A12D-07 3028d15d-698a-4a23-8a09-a79221e28a62 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_704526.TCGA-C8-A133-01A-32R-A12D-07.110714_UNC13-SN749_0083_BD0DLNABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A133 TCGA-C8-A133-01A TCGA-C8-A133-01A-32W-A12S-09 7122dd31-aa3c-4754-8498-6605175395b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-C8-A133.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-C8-A133 TCGA-C8-A133-10A TCGA-C8-A133-10A-01D-A129-02 93825ea9-dad2-4e6c-ab14-d5f53eea20ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-C8-A133.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-C8-A133 TCGA-C8-A133-10A TCGA-C8-A133-10A-01D-A12A-01 9be8a873-88cd-4a02-a50d-9d18ac240401 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-C8-A133.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-C8-A133 TCGA-C8-A133-10A TCGA-C8-A133-10A-01D-A12A-01 9be8a873-88cd-4a02-a50d-9d18ac240401 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E09_741480.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-C8-A133 TCGA-C8-A133-10A TCGA-C8-A133-10A-01D-A12A-01 9be8a873-88cd-4a02-a50d-9d18ac240401 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E09_741480.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-C8-A133 TCGA-C8-A133-10A TCGA-C8-A133-10A-01D-A12A-01 9be8a873-88cd-4a02-a50d-9d18ac240401 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E09_741480.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-C8-A133 TCGA-C8-A133-10A TCGA-C8-A133-10A-01D-A12A-01 9be8a873-88cd-4a02-a50d-9d18ac240401 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E09_741480.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-C8-A133 TCGA-C8-A133-10A TCGA-C8-A133-10A-01D-A12A-01 9be8a873-88cd-4a02-a50d-9d18ac240401 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E09_741480.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-C8-A133 TCGA-C8-A133-10A TCGA-C8-A133-10A-01D-A12A-01 9be8a873-88cd-4a02-a50d-9d18ac240401 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E09_741480.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-C8-A133 TCGA-C8-A133-10A TCGA-C8-A133-10A-01D-A12A-01 9be8a873-88cd-4a02-a50d-9d18ac240401 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E09_741480.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-C8-A133 TCGA-C8-A133-10A TCGA-C8-A133-10A-01D-A12A-01 9be8a873-88cd-4a02-a50d-9d18ac240401 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E09_741480.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-C8-A133 TCGA-C8-A133-10A TCGA-C8-A133-10A-01D-A12B-09 3f217fec-f788-4fea-9a68-e28e5245f7e7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-C8-A133.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-C8-A133 TCGA-C8-A133-10A TCGA-C8-A133-10A-01D-A12B-09 3f217fec-f788-4fea-9a68-e28e5245f7e7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A133 TCGA-C8-A133-10A TCGA-C8-A133-10A-01W-A12S-09 26c92721-8dc4-443c-afe9-845831f3fefd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-C8-A133.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11D-A10X-02 8182148a-6747-4c5a-ba6c-b47725192f62 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A134.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11D-A10Y-09 a3e8738b-2456-4f08-bb3d-5debb4265f85 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A134.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11D-A10Y-09 a3e8738b-2456-4f08-bb3d-5debb4265f85 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11D-A111-01 aad64468-8c93-47ce-bc77-829f4fb8b2d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A134.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11D-A111-01 aad64468-8c93-47ce-bc77-829f4fb8b2d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G05_735386.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11D-A111-01 aad64468-8c93-47ce-bc77-829f4fb8b2d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G05_735386.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11D-A111-01 aad64468-8c93-47ce-bc77-829f4fb8b2d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G05_735386.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11D-A111-01 aad64468-8c93-47ce-bc77-829f4fb8b2d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G05_735386.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11D-A111-01 aad64468-8c93-47ce-bc77-829f4fb8b2d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G05_735386.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11D-A111-01 aad64468-8c93-47ce-bc77-829f4fb8b2d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G05_735386.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11D-A111-01 aad64468-8c93-47ce-bc77-829f4fb8b2d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G05_735386.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11D-A111-01 aad64468-8c93-47ce-bc77-829f4fb8b2d6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G05_735386.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11D-A112-05 9a41ca58-5f46-4b9b-9257-fecd92d1f90b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A134.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11D-A112-05 9a41ca58-5f46-4b9b-9257-fecd92d1f90b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-C8-A134-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11D-A112-05 9a41ca58-5f46-4b9b-9257-fecd92d1f90b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-C8-A134-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11D-A112-05 9a41ca58-5f46-4b9b-9257-fecd92d1f90b DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-C8-A134-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11R-A114-13 b1f365f2-30a5-49cf-8e4f-cde273f1edca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A134.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11R-A114-13 b1f365f2-30a5-49cf-8e4f-cde273f1edca miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A134-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11R-A114-13 b1f365f2-30a5-49cf-8e4f-cde273f1edca miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A134-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11R-A115-07 d96863aa-33a8-43bf-a9b5-589de1e9cf44 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A134.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11R-A115-07 d96863aa-33a8-43bf-a9b5-589de1e9cf44 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012777_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11R-A115-07 d96863aa-33a8-43bf-a9b5-589de1e9cf44 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012777_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11R-A115-07 d96863aa-33a8-43bf-a9b5-589de1e9cf44 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012777_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11R-A115-07 d96863aa-33a8-43bf-a9b5-589de1e9cf44 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_411047.TCGA-C8-A134-01A-11R-A115-07.110607_UNC14-SN744_0124_AD0CVCABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11R-A115-07 d96863aa-33a8-43bf-a9b5-589de1e9cf44 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_411074.TCGA-C8-A134-01A-11R-A115-07.110607_UNC14-SN744_0124_AD0CVCABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11R-A115-07 d96863aa-33a8-43bf-a9b5-589de1e9cf44 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_411148.TCGA-C8-A134-01A-11R-A115-07.110607_UNC14-SN744_0124_AD0CVCABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A134 TCGA-C8-A134-01A TCGA-C8-A134-01A-11W-A12T-09 c7375a1c-093e-4290-be5e-e5bb345ebcee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A134.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A134 TCGA-C8-A134-10A TCGA-C8-A134-10A-01D-A10Z-02 8df3c710-fffe-4fa8-b088-f066b7c636e5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A134.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A134 TCGA-C8-A134-10A TCGA-C8-A134-10A-01D-A110-09 b25af510-abd7-402a-96bf-6532cb18ec71 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A134.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A134 TCGA-C8-A134-10A TCGA-C8-A134-10A-01D-A110-09 b25af510-abd7-402a-96bf-6532cb18ec71 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A134 TCGA-C8-A134-10A TCGA-C8-A134-10A-01D-A113-01 2396d2fd-7513-450b-a112-15e1e3afa661 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A134.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A134 TCGA-C8-A134-10A TCGA-C8-A134-10A-01D-A113-01 2396d2fd-7513-450b-a112-15e1e3afa661 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A08_735326.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A134 TCGA-C8-A134-10A TCGA-C8-A134-10A-01D-A113-01 2396d2fd-7513-450b-a112-15e1e3afa661 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A08_735326.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A134 TCGA-C8-A134-10A TCGA-C8-A134-10A-01D-A113-01 2396d2fd-7513-450b-a112-15e1e3afa661 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A08_735326.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A134 TCGA-C8-A134-10A TCGA-C8-A134-10A-01D-A113-01 2396d2fd-7513-450b-a112-15e1e3afa661 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A08_735326.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A134 TCGA-C8-A134-10A TCGA-C8-A134-10A-01D-A113-01 2396d2fd-7513-450b-a112-15e1e3afa661 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A08_735326.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A134 TCGA-C8-A134-10A TCGA-C8-A134-10A-01D-A113-01 2396d2fd-7513-450b-a112-15e1e3afa661 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A08_735326.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A134 TCGA-C8-A134-10A TCGA-C8-A134-10A-01D-A113-01 2396d2fd-7513-450b-a112-15e1e3afa661 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A08_735326.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A134 TCGA-C8-A134-10A TCGA-C8-A134-10A-01D-A113-01 2396d2fd-7513-450b-a112-15e1e3afa661 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A08_735326.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A134 TCGA-C8-A134-10A TCGA-C8-A134-10A-01W-A12U-09 7cc238a1-0f15-4b4f-88b9-459a4415a64c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A134.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11D-A10X-02 8b51959f-cfd5-480c-8a43-a764230205a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A135.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11D-A10Y-09 6b47c22f-8b4e-40fd-9a12-18b539521224 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A135.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11D-A10Y-09 6b47c22f-8b4e-40fd-9a12-18b539521224 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11D-A111-01 dc5b229b-a3c1-4e91-a28a-809ce6035c0c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A135.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11D-A111-01 dc5b229b-a3c1-4e91-a28a-809ce6035c0c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B02_735256.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11D-A111-01 dc5b229b-a3c1-4e91-a28a-809ce6035c0c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B02_735256.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11D-A111-01 dc5b229b-a3c1-4e91-a28a-809ce6035c0c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B02_735256.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11D-A111-01 dc5b229b-a3c1-4e91-a28a-809ce6035c0c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B02_735256.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11D-A111-01 dc5b229b-a3c1-4e91-a28a-809ce6035c0c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B02_735256.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11D-A111-01 dc5b229b-a3c1-4e91-a28a-809ce6035c0c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B02_735256.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11D-A111-01 dc5b229b-a3c1-4e91-a28a-809ce6035c0c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B02_735256.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11D-A111-01 dc5b229b-a3c1-4e91-a28a-809ce6035c0c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B02_735256.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11D-A112-05 000bef24-c05c-46ee-a84c-9611a41aeb4e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A135.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11D-A112-05 000bef24-c05c-46ee-a84c-9611a41aeb4e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-C8-A135-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11D-A112-05 000bef24-c05c-46ee-a84c-9611a41aeb4e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-C8-A135-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11D-A112-05 000bef24-c05c-46ee-a84c-9611a41aeb4e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-C8-A135-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11R-A114-13 3bac5dc1-de92-45c0-96f5-bda97299eec9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A135.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11R-A114-13 3bac5dc1-de92-45c0-96f5-bda97299eec9 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A135-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11R-A114-13 3bac5dc1-de92-45c0-96f5-bda97299eec9 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A135-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11R-A115-07 306818e8-2e51-4dee-b27c-53ee9cea8d03 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A135.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11R-A115-07 306818e8-2e51-4dee-b27c-53ee9cea8d03 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012791_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11R-A115-07 306818e8-2e51-4dee-b27c-53ee9cea8d03 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012791_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11R-A115-07 306818e8-2e51-4dee-b27c-53ee9cea8d03 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012791_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11R-A115-07 306818e8-2e51-4dee-b27c-53ee9cea8d03 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420614.TCGA-C8-A135-01A-11R-A115-07.110608_SN254_0231_BD0CT2ABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11R-A115-07 306818e8-2e51-4dee-b27c-53ee9cea8d03 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420636.TCGA-C8-A135-01A-11R-A115-07.110608_SN254_0231_BD0CT2ABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11R-A115-07 306818e8-2e51-4dee-b27c-53ee9cea8d03 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420739.TCGA-C8-A135-01A-11R-A115-07.110608_SN254_0231_BD0CT2ABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A135 TCGA-C8-A135-01A TCGA-C8-A135-01A-11W-A12T-09 dbd94c07-9c13-4d24-9ad8-1340d66b31af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A135.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A135 TCGA-C8-A135-10A TCGA-C8-A135-10A-02D-A10Z-02 0bf2367e-9b99-4676-b7f2-1546f6e8164b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A135.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A135 TCGA-C8-A135-10A TCGA-C8-A135-10A-02D-A110-09 4fef2aff-1a1d-434a-910b-ce94fff48677 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A135.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A135 TCGA-C8-A135-10A TCGA-C8-A135-10A-02D-A110-09 4fef2aff-1a1d-434a-910b-ce94fff48677 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A135 TCGA-C8-A135-10A TCGA-C8-A135-10A-02D-A113-01 540c0a51-b411-4565-ba9b-2665fd877289 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A135.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A135 TCGA-C8-A135-10A TCGA-C8-A135-10A-02D-A113-01 540c0a51-b411-4565-ba9b-2665fd877289 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C04_735384.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A135 TCGA-C8-A135-10A TCGA-C8-A135-10A-02D-A113-01 540c0a51-b411-4565-ba9b-2665fd877289 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C04_735384.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A135 TCGA-C8-A135-10A TCGA-C8-A135-10A-02D-A113-01 540c0a51-b411-4565-ba9b-2665fd877289 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C04_735384.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A135 TCGA-C8-A135-10A TCGA-C8-A135-10A-02D-A113-01 540c0a51-b411-4565-ba9b-2665fd877289 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C04_735384.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A135 TCGA-C8-A135-10A TCGA-C8-A135-10A-02D-A113-01 540c0a51-b411-4565-ba9b-2665fd877289 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C04_735384.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A135 TCGA-C8-A135-10A TCGA-C8-A135-10A-02D-A113-01 540c0a51-b411-4565-ba9b-2665fd877289 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C04_735384.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A135 TCGA-C8-A135-10A TCGA-C8-A135-10A-02D-A113-01 540c0a51-b411-4565-ba9b-2665fd877289 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C04_735384.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A135 TCGA-C8-A135-10A TCGA-C8-A135-10A-02D-A113-01 540c0a51-b411-4565-ba9b-2665fd877289 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C04_735384.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A135 TCGA-C8-A135-10A TCGA-C8-A135-10A-02W-A12U-09 afa5b012-502b-4d37-9ad0-fbab263a6a48 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A135.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A137 TCGA-C8-A137-01A TCGA-C8-A137-01A-11D-A10X-02 f2aa63f5-19fc-49dc-bf8f-1a9dd2718c47 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A137.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A137 TCGA-C8-A137-01A TCGA-C8-A137-01A-11D-A10Y-09 08778f40-d895-46f1-8e7b-122fc598418b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A137.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A137 TCGA-C8-A137-01A TCGA-C8-A137-01A-11D-A10Y-09 08778f40-d895-46f1-8e7b-122fc598418b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A137 TCGA-C8-A137-01A TCGA-C8-A137-01A-11D-A111-01 21cd18a4-1c4a-4df0-953c-2f20ab4318f1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A137.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A137 TCGA-C8-A137-01A TCGA-C8-A137-01A-11D-A111-01 21cd18a4-1c4a-4df0-953c-2f20ab4318f1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G07_735304.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A137 TCGA-C8-A137-01A TCGA-C8-A137-01A-11D-A111-01 21cd18a4-1c4a-4df0-953c-2f20ab4318f1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G07_735304.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A137 TCGA-C8-A137-01A TCGA-C8-A137-01A-11D-A111-01 21cd18a4-1c4a-4df0-953c-2f20ab4318f1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G07_735304.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A137 TCGA-C8-A137-01A TCGA-C8-A137-01A-11D-A111-01 21cd18a4-1c4a-4df0-953c-2f20ab4318f1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G07_735304.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A137 TCGA-C8-A137-01A TCGA-C8-A137-01A-11D-A111-01 21cd18a4-1c4a-4df0-953c-2f20ab4318f1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G07_735304.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A137 TCGA-C8-A137-01A TCGA-C8-A137-01A-11D-A111-01 21cd18a4-1c4a-4df0-953c-2f20ab4318f1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G07_735304.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A137 TCGA-C8-A137-01A TCGA-C8-A137-01A-11D-A111-01 21cd18a4-1c4a-4df0-953c-2f20ab4318f1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G07_735304.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A137 TCGA-C8-A137-01A TCGA-C8-A137-01A-11D-A111-01 21cd18a4-1c4a-4df0-953c-2f20ab4318f1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G07_735304.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A137 TCGA-C8-A137-01A TCGA-C8-A137-01A-11D-A112-05 c68c5c63-a403-403f-a5d0-848080d45b2e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A137.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A137 TCGA-C8-A137-01A TCGA-C8-A137-01A-11D-A112-05 c68c5c63-a403-403f-a5d0-848080d45b2e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-C8-A137-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-C8-A137 TCGA-C8-A137-01A TCGA-C8-A137-01A-11D-A112-05 c68c5c63-a403-403f-a5d0-848080d45b2e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-C8-A137-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-C8-A137 TCGA-C8-A137-01A TCGA-C8-A137-01A-11D-A112-05 c68c5c63-a403-403f-a5d0-848080d45b2e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-C8-A137-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-C8-A137 TCGA-C8-A137-01A TCGA-C8-A137-01A-11R-A114-13 8af389c2-7706-47f4-b9d8-d371d2689cc3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A137.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A137 TCGA-C8-A137-01A TCGA-C8-A137-01A-11R-A115-07 2c829af4-a6a7-48b1-9e48-a88be0564752 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A137.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A137 TCGA-C8-A137-01A TCGA-C8-A137-01A-11R-A115-07 2c829af4-a6a7-48b1-9e48-a88be0564752 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012803_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-C8-A137 TCGA-C8-A137-01A TCGA-C8-A137-01A-11R-A115-07 2c829af4-a6a7-48b1-9e48-a88be0564752 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012803_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-C8-A137 TCGA-C8-A137-01A TCGA-C8-A137-01A-11R-A115-07 2c829af4-a6a7-48b1-9e48-a88be0564752 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012803_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-C8-A137 TCGA-C8-A137-01A TCGA-C8-A137-01A-11R-A115-07 2c829af4-a6a7-48b1-9e48-a88be0564752 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_847685.TCGA-C8-A137-01A-11R-A115-07.110608_SN254_0231_BD0CT2ABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A137 TCGA-C8-A137-01A TCGA-C8-A137-01A-11R-A115-07 2c829af4-a6a7-48b1-9e48-a88be0564752 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_847692.TCGA-C8-A137-01A-11R-A115-07.110608_SN254_0231_BD0CT2ABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A137 TCGA-C8-A137-01A TCGA-C8-A137-01A-11R-A115-07 2c829af4-a6a7-48b1-9e48-a88be0564752 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_847709.TCGA-C8-A137-01A-11R-A115-07.110608_SN254_0231_BD0CT2ABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A137 TCGA-C8-A137-01A TCGA-C8-A137-01A-11W-A12T-09 ebf537c2-0acf-44b2-9f3e-70ccc2a92166 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A137.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A137 TCGA-C8-A137-10A TCGA-C8-A137-10A-02D-A10Z-02 068e7043-38d9-4222-a0c0-14dba6643c3e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A137.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A137 TCGA-C8-A137-10A TCGA-C8-A137-10A-02D-A110-09 16cfd410-cb75-4177-884e-c3abf7e4aebb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A137.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A137 TCGA-C8-A137-10A TCGA-C8-A137-10A-02D-A110-09 16cfd410-cb75-4177-884e-c3abf7e4aebb Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A137 TCGA-C8-A137-10A TCGA-C8-A137-10A-02D-A113-01 0055b879-e084-4a7f-bf87-69d38b671742 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A137.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A137 TCGA-C8-A137-10A TCGA-C8-A137-10A-02D-A113-01 0055b879-e084-4a7f-bf87-69d38b671742 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C08_735352.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A137 TCGA-C8-A137-10A TCGA-C8-A137-10A-02D-A113-01 0055b879-e084-4a7f-bf87-69d38b671742 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C08_735352.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A137 TCGA-C8-A137-10A TCGA-C8-A137-10A-02D-A113-01 0055b879-e084-4a7f-bf87-69d38b671742 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C08_735352.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A137 TCGA-C8-A137-10A TCGA-C8-A137-10A-02D-A113-01 0055b879-e084-4a7f-bf87-69d38b671742 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C08_735352.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A137 TCGA-C8-A137-10A TCGA-C8-A137-10A-02D-A113-01 0055b879-e084-4a7f-bf87-69d38b671742 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C08_735352.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A137 TCGA-C8-A137-10A TCGA-C8-A137-10A-02D-A113-01 0055b879-e084-4a7f-bf87-69d38b671742 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C08_735352.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A137 TCGA-C8-A137-10A TCGA-C8-A137-10A-02D-A113-01 0055b879-e084-4a7f-bf87-69d38b671742 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C08_735352.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A137 TCGA-C8-A137-10A TCGA-C8-A137-10A-02D-A113-01 0055b879-e084-4a7f-bf87-69d38b671742 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C08_735352.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A137 TCGA-C8-A137-10A TCGA-C8-A137-10A-02W-A12U-09 9dacf007-44f7-45f8-8c0b-307377e7fbd7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A137.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11D-A10X-02 0af9c0f1-5eb6-460c-a356-f25be77f0bf9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A138.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11D-A10Y-09 f3474e56-8457-4f0b-8a2f-58fdd8f58607 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A138.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11D-A10Y-09 f3474e56-8457-4f0b-8a2f-58fdd8f58607 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11D-A111-01 d8e8db6d-4f38-4ef6-a77a-d3ea769cc78f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A138.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11D-A111-01 d8e8db6d-4f38-4ef6-a77a-d3ea769cc78f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F11_735312.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11D-A111-01 d8e8db6d-4f38-4ef6-a77a-d3ea769cc78f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F11_735312.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11D-A111-01 d8e8db6d-4f38-4ef6-a77a-d3ea769cc78f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F11_735312.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11D-A111-01 d8e8db6d-4f38-4ef6-a77a-d3ea769cc78f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F11_735312.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11D-A111-01 d8e8db6d-4f38-4ef6-a77a-d3ea769cc78f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F11_735312.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11D-A111-01 d8e8db6d-4f38-4ef6-a77a-d3ea769cc78f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F11_735312.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11D-A111-01 d8e8db6d-4f38-4ef6-a77a-d3ea769cc78f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F11_735312.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11D-A111-01 d8e8db6d-4f38-4ef6-a77a-d3ea769cc78f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F11_735312.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11D-A112-05 581f050d-7489-42a2-9dca-f30c75ae9ed0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A138.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11D-A112-05 581f050d-7489-42a2-9dca-f30c75ae9ed0 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-C8-A138-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11D-A112-05 581f050d-7489-42a2-9dca-f30c75ae9ed0 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-C8-A138-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11D-A112-05 581f050d-7489-42a2-9dca-f30c75ae9ed0 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-C8-A138-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11R-A114-13 eef94ddf-9845-4792-9ce6-6c741bf88b7b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A138.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11R-A114-13 eef94ddf-9845-4792-9ce6-6c741bf88b7b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A138-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11R-A114-13 eef94ddf-9845-4792-9ce6-6c741bf88b7b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A138-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11R-A115-07 f543c792-d997-420a-8bf1-c45456b62a8b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A138.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11R-A115-07 f543c792-d997-420a-8bf1-c45456b62a8b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012815_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11R-A115-07 f543c792-d997-420a-8bf1-c45456b62a8b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012815_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11R-A115-07 f543c792-d997-420a-8bf1-c45456b62a8b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012815_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11R-A115-07 f543c792-d997-420a-8bf1-c45456b62a8b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421197.TCGA-C8-A138-01A-11R-A115-07.110527_UNC10-SN254_0225_BD0CVWABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11R-A115-07 f543c792-d997-420a-8bf1-c45456b62a8b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421205.TCGA-C8-A138-01A-11R-A115-07.110527_UNC10-SN254_0225_BD0CVWABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11R-A115-07 f543c792-d997-420a-8bf1-c45456b62a8b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421213.TCGA-C8-A138-01A-11R-A115-07.110527_UNC10-SN254_0225_BD0CVWABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A138 TCGA-C8-A138-01A TCGA-C8-A138-01A-11W-A12T-09 161046b0-54b4-4a97-b26f-b0cb78513722 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A138.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A138 TCGA-C8-A138-10A TCGA-C8-A138-10A-01D-A10Z-02 95be33d6-8ddf-4a70-81dd-a75d9d2c5847 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A138.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A138 TCGA-C8-A138-10A TCGA-C8-A138-10A-01D-A110-09 6128514c-cc6c-4e40-9e59-55ba8f6f361c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A138.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A138 TCGA-C8-A138-10A TCGA-C8-A138-10A-01D-A110-09 6128514c-cc6c-4e40-9e59-55ba8f6f361c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A138 TCGA-C8-A138-10A TCGA-C8-A138-10A-01D-A113-01 a2ed5483-f5bd-473c-bc3c-1c5c8b5dce33 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-C8-A138.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-C8-A138 TCGA-C8-A138-10A TCGA-C8-A138-10A-01W-A12U-09 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-C8-A1HE-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-C8-A1HE TCGA-C8-A1HE-01A TCGA-C8-A1HE-01A-11D-A13K-05 e9d66412-2ee6-49a2-9563-8da5e24e6bea DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-C8-A1HE-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-C8-A1HE TCGA-C8-A1HE-01A TCGA-C8-A1HE-01A-11D-A13L-09 e99917c6-3de1-40b9-bb2c-6c10397a3f95 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C06_772066.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-C8-A1HE TCGA-C8-A1HE-10A TCGA-C8-A1HE-10A-01D-A13N-01 5860ba50-e2bf-42f5-a531-d0fca2b76d6c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C06_772066.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HE TCGA-C8-A1HE-10A TCGA-C8-A1HE-10A-01D-A13N-01 5860ba50-e2bf-42f5-a531-d0fca2b76d6c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C06_772066.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HE TCGA-C8-A1HE-10A TCGA-C8-A1HE-10A-01D-A13N-01 5860ba50-e2bf-42f5-a531-d0fca2b76d6c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C06_772066.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HE TCGA-C8-A1HE-10A TCGA-C8-A1HE-10A-01D-A13N-01 5860ba50-e2bf-42f5-a531-d0fca2b76d6c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C06_772066.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HE TCGA-C8-A1HE-10A TCGA-C8-A1HE-10A-01D-A13N-01 5860ba50-e2bf-42f5-a531-d0fca2b76d6c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C06_772066.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HE TCGA-C8-A1HE-10A TCGA-C8-A1HE-10A-01D-A13N-01 5860ba50-e2bf-42f5-a531-d0fca2b76d6c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C06_772066.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HE TCGA-C8-A1HE-10A TCGA-C8-A1HE-10A-01D-A13N-01 5860ba50-e2bf-42f5-a531-d0fca2b76d6c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C06_772066.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-C8-A1HE TCGA-C8-A1HE-10A TCGA-C8-A1HE-10A-01D-A13O-09 73d1406e-7588-4ba8-9900-8ff69d65b2bd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HE TCGA-C8-A1HE-10A TCGA-C8-A1HE-10A-01W-A14R-09 85621a94-60cf-45fe-b8b9-9d47f46b511a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11D-A133-02 8e026687-2192-4c1b-ad35-e0f118610673 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11D-A134-01 d5447c87-4ee0-4566-a933-997ad63e6009 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11D-A134-01 d5447c87-4ee0-4566-a933-997ad63e6009 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H08_755886.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11D-A134-01 d5447c87-4ee0-4566-a933-997ad63e6009 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H08_755886.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11D-A134-01 d5447c87-4ee0-4566-a933-997ad63e6009 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H08_755886.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11D-A134-01 d5447c87-4ee0-4566-a933-997ad63e6009 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H08_755886.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11D-A134-01 d5447c87-4ee0-4566-a933-997ad63e6009 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H08_755886.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11D-A134-01 d5447c87-4ee0-4566-a933-997ad63e6009 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H08_755886.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11D-A134-01 d5447c87-4ee0-4566-a933-997ad63e6009 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H08_755886.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11D-A134-01 d5447c87-4ee0-4566-a933-997ad63e6009 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H08_755886.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11D-A135-09 508a26f2-d117-44aa-b579-00a119b8bcc4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11D-A135-09 508a26f2-d117-44aa-b579-00a119b8bcc4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11D-A138-05 ff6f0cbd-12da-43fc-ad00-a1acac41b4ca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11D-A138-05 ff6f0cbd-12da-43fc-ad00-a1acac41b4ca DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324048_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11D-A138-05 ff6f0cbd-12da-43fc-ad00-a1acac41b4ca DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324048_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11D-A138-05 ff6f0cbd-12da-43fc-ad00-a1acac41b4ca DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-2.TCGA-C8-A1HF-01A-11D-A138-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0 103 07-NOV-11 05.19.10.670000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11D-A138-05 ff6f0cbd-12da-43fc-ad00-a1acac41b4ca DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-3.TCGA-C8-A1HF-01A-11D-A138-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0 103 07-NOV-11 05.59.32.897000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11R-A136-13 86db1766-074a-49bb-83c3-4e2149bccae8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11R-A136-13 86db1766-074a-49bb-83c3-4e2149bccae8 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A1HF-01A-11R-A136-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11R-A136-13 86db1766-074a-49bb-83c3-4e2149bccae8 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A1HF-01A-11R-A136-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11R-A137-07 62b06301-531d-4fc1-bb00-ede8e507e8f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11R-A137-07 62b06301-531d-4fc1-bb00-ede8e507e8f4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013077_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 103 24-JUL-11 07.52.05.474000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11R-A137-07 62b06301-531d-4fc1-bb00-ede8e507e8f4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013077_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 103 24-JUL-11 07.49.44.366000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11R-A137-07 62b06301-531d-4fc1-bb00-ede8e507e8f4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013077_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 103 24-JUL-11 07.50.27.960000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11R-A137-07 62b06301-531d-4fc1-bb00-ede8e507e8f4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451757.TCGA-C8-A1HF-01A-11R-A137-07.110801_UNC13-SN749_0088_AD0DTHABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11R-A137-07 62b06301-531d-4fc1-bb00-ede8e507e8f4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451760.TCGA-C8-A1HF-01A-11R-A137-07.110801_UNC13-SN749_0088_AD0DTHABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11R-A137-07 62b06301-531d-4fc1-bb00-ede8e507e8f4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451800.TCGA-C8-A1HF-01A-11R-A137-07.110801_UNC13-SN749_0088_AD0DTHABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-01A TCGA-C8-A1HF-01A-11W-A14P-09 d2ba822a-8135-4a79-a70b-81217c5aa95b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-10A TCGA-C8-A1HF-10A-01D-A133-02 f98b69f0-84dc-4337-9df5-8e28535d0f19 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-10A TCGA-C8-A1HF-10A-01D-A134-01 cc2c1cee-1ba4-4c71-ab56-18a60e42f5cd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-10A TCGA-C8-A1HF-10A-01D-A134-01 cc2c1cee-1ba4-4c71-ab56-18a60e42f5cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B06_755792.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-C8-A1HF TCGA-C8-A1HF-10A TCGA-C8-A1HF-10A-01D-A134-01 cc2c1cee-1ba4-4c71-ab56-18a60e42f5cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B06_755792.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HF TCGA-C8-A1HF-10A TCGA-C8-A1HF-10A-01D-A134-01 cc2c1cee-1ba4-4c71-ab56-18a60e42f5cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B06_755792.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HF TCGA-C8-A1HF-10A TCGA-C8-A1HF-10A-01D-A134-01 cc2c1cee-1ba4-4c71-ab56-18a60e42f5cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B06_755792.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HF TCGA-C8-A1HF-10A TCGA-C8-A1HF-10A-01D-A134-01 cc2c1cee-1ba4-4c71-ab56-18a60e42f5cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B06_755792.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HF TCGA-C8-A1HF-10A TCGA-C8-A1HF-10A-01D-A134-01 cc2c1cee-1ba4-4c71-ab56-18a60e42f5cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B06_755792.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HF TCGA-C8-A1HF-10A TCGA-C8-A1HF-10A-01D-A134-01 cc2c1cee-1ba4-4c71-ab56-18a60e42f5cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B06_755792.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HF TCGA-C8-A1HF-10A TCGA-C8-A1HF-10A-01D-A134-01 cc2c1cee-1ba4-4c71-ab56-18a60e42f5cd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B06_755792.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-10A TCGA-C8-A1HF-10A-01D-A135-09 7ab5304c-1c60-4d91-8009-808ae01ee432 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-10A TCGA-C8-A1HF-10A-01D-A135-09 7ab5304c-1c60-4d91-8009-808ae01ee432 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A1HF TCGA-C8-A1HF-10A TCGA-C8-A1HF-10A-01W-A14P-09 f364c036-ce29-456e-9643-5082e9efff33 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11D-A133-02 2314d782-dc62-4f7e-90b8-42f4ec55dc33 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11D-A134-01 1580dd65-d698-4a80-8345-ad50e16709d1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11D-A134-01 1580dd65-d698-4a80-8345-ad50e16709d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B11_755770.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11D-A134-01 1580dd65-d698-4a80-8345-ad50e16709d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B11_755770.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11D-A134-01 1580dd65-d698-4a80-8345-ad50e16709d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B11_755770.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11D-A134-01 1580dd65-d698-4a80-8345-ad50e16709d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B11_755770.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11D-A134-01 1580dd65-d698-4a80-8345-ad50e16709d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B11_755770.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11D-A134-01 1580dd65-d698-4a80-8345-ad50e16709d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B11_755770.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11D-A134-01 1580dd65-d698-4a80-8345-ad50e16709d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B11_755770.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11D-A134-01 1580dd65-d698-4a80-8345-ad50e16709d1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B11_755770.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11D-A135-09 ba937e3d-30b7-4446-84fb-5f77831a4843 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11D-A135-09 ba937e3d-30b7-4446-84fb-5f77831a4843 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11D-A138-05 5e15d736-a74a-409f-9efa-879200e6f0ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11D-A138-05 5e15d736-a74a-409f-9efa-879200e6f0ec DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324048_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11D-A138-05 5e15d736-a74a-409f-9efa-879200e6f0ec DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324048_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11D-A138-05 5e15d736-a74a-409f-9efa-879200e6f0ec DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-2.TCGA-C8-A1HG-01A-11D-A138-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0 103 07-NOV-11 05.19.10.670000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11D-A138-05 5e15d736-a74a-409f-9efa-879200e6f0ec DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-3.TCGA-C8-A1HG-01A-11D-A138-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0 103 07-NOV-11 05.59.32.897000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11R-A136-13 da1f348d-fc70-4e0f-a794-797a94c4fea3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11R-A136-13 da1f348d-fc70-4e0f-a794-797a94c4fea3 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A1HG-01A-11R-A136-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11R-A136-13 da1f348d-fc70-4e0f-a794-797a94c4fea3 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A1HG-01A-11R-A136-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11R-A137-07 094076d0-97e4-460d-b48c-7ee2371db99d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11R-A137-07 094076d0-97e4-460d-b48c-7ee2371db99d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013070_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 103 24-JUL-11 07.52.05.474000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11R-A137-07 094076d0-97e4-460d-b48c-7ee2371db99d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013070_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 103 24-JUL-11 07.49.44.366000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11R-A137-07 094076d0-97e4-460d-b48c-7ee2371db99d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013070_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 103 24-JUL-11 07.50.27.960000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11R-A137-07 094076d0-97e4-460d-b48c-7ee2371db99d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_846847.TCGA-C8-A1HG-01A-11R-A137-07.110801_UNC13-SN749_0088_AD0DTHABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11R-A137-07 094076d0-97e4-460d-b48c-7ee2371db99d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_846849.TCGA-C8-A1HG-01A-11R-A137-07.110801_UNC13-SN749_0088_AD0DTHABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11R-A137-07 094076d0-97e4-460d-b48c-7ee2371db99d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_846904.TCGA-C8-A1HG-01A-11R-A137-07.110801_UNC13-SN749_0088_AD0DTHABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-01A TCGA-C8-A1HG-01A-11W-A14P-09 9b565b95-f9a6-4215-9b93-45f00b72be55 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-10A TCGA-C8-A1HG-10A-01D-A133-02 7f13172b-12dc-4e78-920a-ab3004277cf7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-10A TCGA-C8-A1HG-10A-01D-A134-01 6b4ede9b-e294-4f18-8999-27677ce6704e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-10A TCGA-C8-A1HG-10A-01D-A134-01 6b4ede9b-e294-4f18-8999-27677ce6704e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D11_755854.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-C8-A1HG TCGA-C8-A1HG-10A TCGA-C8-A1HG-10A-01D-A134-01 6b4ede9b-e294-4f18-8999-27677ce6704e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D11_755854.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HG TCGA-C8-A1HG-10A TCGA-C8-A1HG-10A-01D-A134-01 6b4ede9b-e294-4f18-8999-27677ce6704e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D11_755854.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HG TCGA-C8-A1HG-10A TCGA-C8-A1HG-10A-01D-A134-01 6b4ede9b-e294-4f18-8999-27677ce6704e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D11_755854.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HG TCGA-C8-A1HG-10A TCGA-C8-A1HG-10A-01D-A134-01 6b4ede9b-e294-4f18-8999-27677ce6704e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D11_755854.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HG TCGA-C8-A1HG-10A TCGA-C8-A1HG-10A-01D-A134-01 6b4ede9b-e294-4f18-8999-27677ce6704e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D11_755854.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HG TCGA-C8-A1HG-10A TCGA-C8-A1HG-10A-01D-A134-01 6b4ede9b-e294-4f18-8999-27677ce6704e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D11_755854.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HG TCGA-C8-A1HG-10A TCGA-C8-A1HG-10A-01D-A134-01 6b4ede9b-e294-4f18-8999-27677ce6704e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D11_755854.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-10A TCGA-C8-A1HG-10A-01D-A135-09 bfecb97d-fcf8-4508-8c7a-b2568f6e3972 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-10A TCGA-C8-A1HG-10A-01D-A135-09 bfecb97d-fcf8-4508-8c7a-b2568f6e3972 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A1HG TCGA-C8-A1HG-10A TCGA-C8-A1HG-10A-01W-A14P-09 e8924a44-0ada-422a-8b0e-7ffeaab78141 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11D-A133-02 b6ee6717-e05a-4f05-9d89-2d062853395e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11D-A134-01 d8c894f8-3423-401d-9656-65dfd0383fd7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11D-A134-01 d8c894f8-3423-401d-9656-65dfd0383fd7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B04_755920.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11D-A134-01 d8c894f8-3423-401d-9656-65dfd0383fd7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B04_755920.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11D-A134-01 d8c894f8-3423-401d-9656-65dfd0383fd7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B04_755920.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11D-A134-01 d8c894f8-3423-401d-9656-65dfd0383fd7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B04_755920.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11D-A134-01 d8c894f8-3423-401d-9656-65dfd0383fd7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B04_755920.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11D-A134-01 d8c894f8-3423-401d-9656-65dfd0383fd7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B04_755920.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11D-A134-01 d8c894f8-3423-401d-9656-65dfd0383fd7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B04_755920.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11D-A134-01 d8c894f8-3423-401d-9656-65dfd0383fd7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B04_755920.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11D-A135-09 75dc3bff-75da-4734-b930-a18fd3d1ebfe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11D-A135-09 75dc3bff-75da-4734-b930-a18fd3d1ebfe Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11D-A138-05 4ccbaba6-e904-47ab-bd1c-b2c690ecef9e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11D-A138-05 4ccbaba6-e904-47ab-bd1c-b2c690ecef9e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324048_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11D-A138-05 4ccbaba6-e904-47ab-bd1c-b2c690ecef9e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324048_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11D-A138-05 4ccbaba6-e904-47ab-bd1c-b2c690ecef9e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-2.TCGA-C8-A1HI-01A-11D-A138-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0 103 07-NOV-11 05.19.10.670000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11D-A138-05 4ccbaba6-e904-47ab-bd1c-b2c690ecef9e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-3.TCGA-C8-A1HI-01A-11D-A138-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0 103 07-NOV-11 05.59.32.897000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11R-A136-13 852ee5e3-8e3f-4c6f-bf03-53b420354c62 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11R-A136-13 852ee5e3-8e3f-4c6f-bf03-53b420354c62 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A1HI-01A-11R-A136-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11R-A136-13 852ee5e3-8e3f-4c6f-bf03-53b420354c62 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A1HI-01A-11R-A136-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11R-A137-07 994c96ec-ea0a-4741-8fef-53cdbfe28cfa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11R-A137-07 994c96ec-ea0a-4741-8fef-53cdbfe28cfa Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013094_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 103 24-JUL-11 07.52.05.474000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11R-A137-07 994c96ec-ea0a-4741-8fef-53cdbfe28cfa Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013094_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 103 24-JUL-11 07.49.44.366000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11R-A137-07 994c96ec-ea0a-4741-8fef-53cdbfe28cfa Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013094_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 103 24-JUL-11 07.50.27.960000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11R-A137-07 994c96ec-ea0a-4741-8fef-53cdbfe28cfa RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451710.TCGA-C8-A1HI-01A-11R-A137-07.110801_UNC13-SN749_0088_AD0DTHABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11R-A137-07 994c96ec-ea0a-4741-8fef-53cdbfe28cfa RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451712.TCGA-C8-A1HI-01A-11R-A137-07.110801_UNC13-SN749_0088_AD0DTHABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11R-A137-07 994c96ec-ea0a-4741-8fef-53cdbfe28cfa RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451724.TCGA-C8-A1HI-01A-11R-A137-07.110801_UNC13-SN749_0088_AD0DTHABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-01A TCGA-C8-A1HI-01A-11W-A14P-09 ac8ab70c-5fc4-40a1-bb41-91cafbca7538 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-10A TCGA-C8-A1HI-10A-01D-A133-02 ad805704-2ee8-424d-858c-3f2c2481bccf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-10A TCGA-C8-A1HI-10A-01D-A134-01 4cfe47c9-d66a-4c9b-902c-647fb9bb1536 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-10A TCGA-C8-A1HI-10A-01D-A134-01 4cfe47c9-d66a-4c9b-902c-647fb9bb1536 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D05_755778.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-C8-A1HI TCGA-C8-A1HI-10A TCGA-C8-A1HI-10A-01D-A134-01 4cfe47c9-d66a-4c9b-902c-647fb9bb1536 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D05_755778.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HI TCGA-C8-A1HI-10A TCGA-C8-A1HI-10A-01D-A134-01 4cfe47c9-d66a-4c9b-902c-647fb9bb1536 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D05_755778.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HI TCGA-C8-A1HI-10A TCGA-C8-A1HI-10A-01D-A134-01 4cfe47c9-d66a-4c9b-902c-647fb9bb1536 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D05_755778.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HI TCGA-C8-A1HI-10A TCGA-C8-A1HI-10A-01D-A134-01 4cfe47c9-d66a-4c9b-902c-647fb9bb1536 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D05_755778.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HI TCGA-C8-A1HI-10A TCGA-C8-A1HI-10A-01D-A134-01 4cfe47c9-d66a-4c9b-902c-647fb9bb1536 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D05_755778.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HI TCGA-C8-A1HI-10A TCGA-C8-A1HI-10A-01D-A134-01 4cfe47c9-d66a-4c9b-902c-647fb9bb1536 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D05_755778.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HI TCGA-C8-A1HI-10A TCGA-C8-A1HI-10A-01D-A134-01 4cfe47c9-d66a-4c9b-902c-647fb9bb1536 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D05_755778.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-10A TCGA-C8-A1HI-10A-01D-A135-09 6944644c-a43b-4a5b-b506-7427227f3eb0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-10A TCGA-C8-A1HI-10A-01D-A135-09 6944644c-a43b-4a5b-b506-7427227f3eb0 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A1HI TCGA-C8-A1HI-10A TCGA-C8-A1HI-10A-01W-A14P-09 51f213a1-e15c-4391-8356-cac19b8bee76 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HJ TCGA-C8-A1HJ-01A TCGA-C8-A1HJ-01A-11D-A13I-02 bd039a89-40a2-4d7d-93a7-1f2c0e8a6405 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HJ TCGA-C8-A1HJ-01A TCGA-C8-A1HJ-01A-11D-A13J-01 6275c0ff-efae-4d00-b3ae-123cbb90b4e2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HJ TCGA-C8-A1HJ-01A TCGA-C8-A1HJ-01A-11D-A13J-01 6275c0ff-efae-4d00-b3ae-123cbb90b4e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C03_772214.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-C8-A1HJ TCGA-C8-A1HJ-01A TCGA-C8-A1HJ-01A-11D-A13J-01 6275c0ff-efae-4d00-b3ae-123cbb90b4e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C03_772214.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HJ TCGA-C8-A1HJ-01A TCGA-C8-A1HJ-01A-11D-A13J-01 6275c0ff-efae-4d00-b3ae-123cbb90b4e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C03_772214.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HJ TCGA-C8-A1HJ-01A TCGA-C8-A1HJ-01A-11D-A13J-01 6275c0ff-efae-4d00-b3ae-123cbb90b4e2 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C03_772214.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HJ TCGA-C8-A1HJ-01A TCGA-C8-A1HJ-01A-11D-A13J-01 6275c0ff-efae-4d00-b3ae-123cbb90b4e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C03_772214.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HJ TCGA-C8-A1HJ-01A TCGA-C8-A1HJ-01A-11D-A13J-01 6275c0ff-efae-4d00-b3ae-123cbb90b4e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C03_772214.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-C8-A1HJ TCGA-C8-A1HJ-01A TCGA-C8-A1HJ-01A-11D-A13K-05 b43ab98c-36d5-42f9-aef9-f48b92758efd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HJ TCGA-C8-A1HJ-01A TCGA-C8-A1HJ-01A-11D-A13K-05 b43ab98c-36d5-42f9-aef9-f48b92758efd DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818145_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-C8-A1HJ TCGA-C8-A1HJ-01A TCGA-C8-A1HJ-01A-11D-A13K-05 b43ab98c-36d5-42f9-aef9-f48b92758efd DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818145_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-C8-A1HJ TCGA-C8-A1HJ-01A TCGA-C8-A1HJ-01A-11D-A13K-05 b43ab98c-36d5-42f9-aef9-f48b92758efd DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-C8-A1HJ-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-C8-A1HJ TCGA-C8-A1HJ-01A TCGA-C8-A1HJ-01A-11D-A13K-05 b43ab98c-36d5-42f9-aef9-f48b92758efd DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-C8-A1HJ-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-C8-A1HJ TCGA-C8-A1HJ-01A TCGA-C8-A1HJ-01A-11D-A13L-09 a62c3601-b90f-402f-8212-ffdfde3c6df8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HJ TCGA-C8-A1HJ-01A TCGA-C8-A1HJ-01A-11R-A13P-13 727a3688-9f03-4c50-8f5f-ab1b51648089 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HJ TCGA-C8-A1HJ-01A TCGA-C8-A1HJ-01A-11R-A13P-13 727a3688-9f03-4c50-8f5f-ab1b51648089 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A1HJ-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A1HJ TCGA-C8-A1HJ-01A TCGA-C8-A1HJ-01A-11R-A13P-13 727a3688-9f03-4c50-8f5f-ab1b51648089 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A1HJ-01A-11R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A1HJ TCGA-C8-A1HJ-01A TCGA-C8-A1HJ-01A-11R-A13Q-07 c0dd6c33-008d-44e8-b20c-8089bc3e29a3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HJ TCGA-C8-A1HJ-01A TCGA-C8-A1HJ-01A-11R-A13Q-07 c0dd6c33-008d-44e8-b20c-8089bc3e29a3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_483118.TCGA-C8-A1HJ-01A-11R-A13Q-07.110809_UNC10-SN254_0260_BD0DKNABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A1HJ TCGA-C8-A1HJ-01A TCGA-C8-A1HJ-01A-11R-A13Q-07 c0dd6c33-008d-44e8-b20c-8089bc3e29a3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_483139.TCGA-C8-A1HJ-01A-11R-A13Q-07.110809_UNC10-SN254_0260_BD0DKNABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A1HJ TCGA-C8-A1HJ-01A TCGA-C8-A1HJ-01A-11R-A13Q-07 c0dd6c33-008d-44e8-b20c-8089bc3e29a3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_483182.TCGA-C8-A1HJ-01A-11R-A13Q-07.110809_UNC10-SN254_0260_BD0DKNABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A1HJ TCGA-C8-A1HJ-01A TCGA-C8-A1HJ-01A-11W-A14Q-09 903ec912-d437-4752-9f77-b8af9e086ce2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HJ TCGA-C8-A1HJ-10A TCGA-C8-A1HJ-10A-01D-A13M-02 314c9fc7-448f-4363-8650-d5db3bdfec2b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HJ TCGA-C8-A1HJ-10A TCGA-C8-A1HJ-10A-01D-A13N-01 80520634-8332-4042-a30e-96aab2079d27 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HJ TCGA-C8-A1HJ-10A TCGA-C8-A1HJ-10A-01D-A13N-01 80520634-8332-4042-a30e-96aab2079d27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F05_772150.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-C8-A1HJ TCGA-C8-A1HJ-10A TCGA-C8-A1HJ-10A-01D-A13N-01 80520634-8332-4042-a30e-96aab2079d27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F05_772150.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HJ TCGA-C8-A1HJ-10A TCGA-C8-A1HJ-10A-01D-A13N-01 80520634-8332-4042-a30e-96aab2079d27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F05_772150.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HJ TCGA-C8-A1HJ-10A TCGA-C8-A1HJ-10A-01D-A13N-01 80520634-8332-4042-a30e-96aab2079d27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F05_772150.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HJ TCGA-C8-A1HJ-10A TCGA-C8-A1HJ-10A-01D-A13N-01 80520634-8332-4042-a30e-96aab2079d27 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F05_772150.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HJ TCGA-C8-A1HJ-10A TCGA-C8-A1HJ-10A-01D-A13N-01 80520634-8332-4042-a30e-96aab2079d27 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F05_772150.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-C8-A1HJ TCGA-C8-A1HJ-10A TCGA-C8-A1HJ-10A-01D-A13O-09 913051a1-919a-436c-8fc2-9110968c19c3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HJ TCGA-C8-A1HJ-10A TCGA-C8-A1HJ-10A-01W-A14R-09 2b41fb8c-c0eb-46d8-9e41-d9bfb0922573 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HK TCGA-C8-A1HK-01A TCGA-C8-A1HK-01A-21D-A13I-02 9af23dda-90f9-4738-aa68-15585f6c92ac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HK TCGA-C8-A1HK-01A TCGA-C8-A1HK-01A-21D-A13J-01 74864fc6-1cd0-46b0-9a71-65f73444f7ee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HK TCGA-C8-A1HK-01A TCGA-C8-A1HK-01A-21D-A13J-01 74864fc6-1cd0-46b0-9a71-65f73444f7ee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B07_772154.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-C8-A1HK TCGA-C8-A1HK-01A TCGA-C8-A1HK-01A-21D-A13J-01 74864fc6-1cd0-46b0-9a71-65f73444f7ee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B07_772154.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HK TCGA-C8-A1HK-01A TCGA-C8-A1HK-01A-21D-A13J-01 74864fc6-1cd0-46b0-9a71-65f73444f7ee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B07_772154.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HK TCGA-C8-A1HK-01A TCGA-C8-A1HK-01A-21D-A13J-01 74864fc6-1cd0-46b0-9a71-65f73444f7ee SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B07_772154.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HK TCGA-C8-A1HK-01A TCGA-C8-A1HK-01A-21D-A13J-01 74864fc6-1cd0-46b0-9a71-65f73444f7ee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B07_772154.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HK TCGA-C8-A1HK-01A TCGA-C8-A1HK-01A-21D-A13J-01 74864fc6-1cd0-46b0-9a71-65f73444f7ee SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B07_772154.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-C8-A1HK TCGA-C8-A1HK-01A TCGA-C8-A1HK-01A-21D-A13K-05 2356045c-30f6-4613-a12d-79f119ade883 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HK TCGA-C8-A1HK-01A TCGA-C8-A1HK-01A-21D-A13K-05 2356045c-30f6-4613-a12d-79f119ade883 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HK TCGA-C8-A1HK-01A TCGA-C8-A1HK-01A-21R-A13P-13 917622b7-2ff6-42a9-ac4b-71e0647f397f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HK TCGA-C8-A1HK-01A TCGA-C8-A1HK-01A-21R-A13P-13 917622b7-2ff6-42a9-ac4b-71e0647f397f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A1HK-01A-21R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A1HK TCGA-C8-A1HK-01A TCGA-C8-A1HK-01A-21R-A13P-13 917622b7-2ff6-42a9-ac4b-71e0647f397f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A1HK-01A-21R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A1HK TCGA-C8-A1HK-01A TCGA-C8-A1HK-01A-21R-A13Q-07 83d9c730-9a1e-42b6-a1dd-6a57d0e24f2c Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HK TCGA-C8-A1HK-10A TCGA-C8-A1HK-10A-01D-A13M-02 ab57d32d-f7ce-4a1c-849c-1e1859822410 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HK TCGA-C8-A1HK-10A TCGA-C8-A1HK-10A-01D-A13N-01 4e0cf9ce-72d8-49ab-86c2-0e33f6f5af9e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HK TCGA-C8-A1HK-10A TCGA-C8-A1HK-10A-01D-A13N-01 4e0cf9ce-72d8-49ab-86c2-0e33f6f5af9e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_G01_772064.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-C8-A1HK TCGA-C8-A1HK-10A TCGA-C8-A1HK-10A-01D-A13N-01 4e0cf9ce-72d8-49ab-86c2-0e33f6f5af9e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_G01_772064.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HK TCGA-C8-A1HK-10A TCGA-C8-A1HK-10A-01D-A13N-01 4e0cf9ce-72d8-49ab-86c2-0e33f6f5af9e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_G01_772064.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HK TCGA-C8-A1HK-10A TCGA-C8-A1HK-10A-01D-A13N-01 4e0cf9ce-72d8-49ab-86c2-0e33f6f5af9e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_G01_772064.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HK TCGA-C8-A1HK-10A TCGA-C8-A1HK-10A-01D-A13N-01 4e0cf9ce-72d8-49ab-86c2-0e33f6f5af9e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_G01_772064.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HK TCGA-C8-A1HK-10A TCGA-C8-A1HK-10A-01D-A13N-01 4e0cf9ce-72d8-49ab-86c2-0e33f6f5af9e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_G01_772064.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HK TCGA-C8-A1HK-10A TCGA-C8-A1HK-10A-01D-A13N-01 4e0cf9ce-72d8-49ab-86c2-0e33f6f5af9e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_G01_772064.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HK TCGA-C8-A1HK-10A TCGA-C8-A1HK-10A-01D-A13N-01 4e0cf9ce-72d8-49ab-86c2-0e33f6f5af9e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_G01_772064.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-C8-A1HK TCGA-C8-A1HK-10A TCGA-C8-A1HK-10A-01D-A13O-09 4b60a302-dafb-454c-a114-c83e6df778cc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HK TCGA-C8-A1HK-10A TCGA-C8-A1HK-10A-01W-A14R-09 03cca78d-c06e-40a3-82a5-0c04eb3ffb9c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11D-A133-02 95718a8f-48e1-4344-9962-5f02cb841553 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11D-A134-01 5b7b0e6b-b247-4478-8dd3-a9b749e32efe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11D-A134-01 5b7b0e6b-b247-4478-8dd3-a9b749e32efe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B09_755826.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11D-A134-01 5b7b0e6b-b247-4478-8dd3-a9b749e32efe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B09_755826.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11D-A134-01 5b7b0e6b-b247-4478-8dd3-a9b749e32efe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B09_755826.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11D-A134-01 5b7b0e6b-b247-4478-8dd3-a9b749e32efe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B09_755826.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11D-A134-01 5b7b0e6b-b247-4478-8dd3-a9b749e32efe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B09_755826.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11D-A134-01 5b7b0e6b-b247-4478-8dd3-a9b749e32efe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B09_755826.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11D-A134-01 5b7b0e6b-b247-4478-8dd3-a9b749e32efe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B09_755826.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11D-A134-01 5b7b0e6b-b247-4478-8dd3-a9b749e32efe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B09_755826.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11D-A135-09 88c9ef88-5d85-4a4b-9c68-d9ec709a1f07 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11D-A135-09 88c9ef88-5d85-4a4b-9c68-d9ec709a1f07 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11D-A138-05 28d12508-22c0-4f5c-a3d2-cdbaaec8d48e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11D-A138-05 28d12508-22c0-4f5c-a3d2-cdbaaec8d48e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324071_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11D-A138-05 28d12508-22c0-4f5c-a3d2-cdbaaec8d48e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324071_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11D-A138-05 28d12508-22c0-4f5c-a3d2-cdbaaec8d48e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-2.TCGA-C8-A1HL-01A-11D-A138-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0 103 07-NOV-11 05.19.10.670000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11D-A138-05 28d12508-22c0-4f5c-a3d2-cdbaaec8d48e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-3.TCGA-C8-A1HL-01A-11D-A138-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0 103 07-NOV-11 05.59.32.897000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11R-A136-13 a7088f18-c906-4691-910f-325b1935afd9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11R-A136-13 a7088f18-c906-4691-910f-325b1935afd9 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A1HL-01A-11R-A136-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11R-A136-13 a7088f18-c906-4691-910f-325b1935afd9 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A1HL-01A-11R-A136-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11R-A137-07 9d80ba46-b65f-4338-99bc-370f8eaefe4e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11R-A137-07 9d80ba46-b65f-4338-99bc-370f8eaefe4e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013091_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 103 24-JUL-11 07.52.05.474000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11R-A137-07 9d80ba46-b65f-4338-99bc-370f8eaefe4e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013091_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 103 24-JUL-11 07.49.44.366000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11R-A137-07 9d80ba46-b65f-4338-99bc-370f8eaefe4e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013091_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 103 24-JUL-11 07.50.27.960000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11R-A137-07 9d80ba46-b65f-4338-99bc-370f8eaefe4e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451386.TCGA-C8-A1HL-01A-11R-A137-07.110801_UNC13-SN749_0088_AD0DTHABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11R-A137-07 9d80ba46-b65f-4338-99bc-370f8eaefe4e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451390.TCGA-C8-A1HL-01A-11R-A137-07.110801_UNC13-SN749_0088_AD0DTHABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11R-A137-07 9d80ba46-b65f-4338-99bc-370f8eaefe4e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451442.TCGA-C8-A1HL-01A-11R-A137-07.110801_UNC13-SN749_0088_AD0DTHABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-01A TCGA-C8-A1HL-01A-11W-A14P-09 ffe26127-30f4-43dd-876b-0561742872d8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-10A TCGA-C8-A1HL-10A-01D-A133-02 44135cdb-5c74-4958-bc85-5e296798d72e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-10A TCGA-C8-A1HL-10A-01D-A134-01 d6863196-b0ec-4884-8c66-56acaf6f264a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-10A TCGA-C8-A1HL-10A-01D-A134-01 d6863196-b0ec-4884-8c66-56acaf6f264a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G06_755774.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-C8-A1HL TCGA-C8-A1HL-10A TCGA-C8-A1HL-10A-01D-A134-01 d6863196-b0ec-4884-8c66-56acaf6f264a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G06_755774.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HL TCGA-C8-A1HL-10A TCGA-C8-A1HL-10A-01D-A134-01 d6863196-b0ec-4884-8c66-56acaf6f264a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G06_755774.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HL TCGA-C8-A1HL-10A TCGA-C8-A1HL-10A-01D-A134-01 d6863196-b0ec-4884-8c66-56acaf6f264a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G06_755774.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HL TCGA-C8-A1HL-10A TCGA-C8-A1HL-10A-01D-A134-01 d6863196-b0ec-4884-8c66-56acaf6f264a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G06_755774.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HL TCGA-C8-A1HL-10A TCGA-C8-A1HL-10A-01D-A134-01 d6863196-b0ec-4884-8c66-56acaf6f264a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G06_755774.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HL TCGA-C8-A1HL-10A TCGA-C8-A1HL-10A-01D-A134-01 d6863196-b0ec-4884-8c66-56acaf6f264a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G06_755774.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HL TCGA-C8-A1HL-10A TCGA-C8-A1HL-10A-01D-A134-01 d6863196-b0ec-4884-8c66-56acaf6f264a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G06_755774.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-10A TCGA-C8-A1HL-10A-01D-A135-09 b4876746-52a8-4fc2-8454-93a4f8f0e8b6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-10A TCGA-C8-A1HL-10A-01D-A135-09 b4876746-52a8-4fc2-8454-93a4f8f0e8b6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A1HL TCGA-C8-A1HL-10A TCGA-C8-A1HL-10A-01W-A14P-09 03fda91c-8901-455d-9963-1ea4497534d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12D-A133-02 b0288139-6fed-4d40-9668-d5a3eeae3624 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12D-A134-01 b3696964-30e2-4342-914d-d7c2f5c88322 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12D-A134-01 b3696964-30e2-4342-914d-d7c2f5c88322 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B07_755872.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12D-A134-01 b3696964-30e2-4342-914d-d7c2f5c88322 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B07_755872.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12D-A134-01 b3696964-30e2-4342-914d-d7c2f5c88322 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B07_755872.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12D-A134-01 b3696964-30e2-4342-914d-d7c2f5c88322 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B07_755872.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12D-A134-01 b3696964-30e2-4342-914d-d7c2f5c88322 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B07_755872.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12D-A134-01 b3696964-30e2-4342-914d-d7c2f5c88322 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B07_755872.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12D-A134-01 b3696964-30e2-4342-914d-d7c2f5c88322 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B07_755872.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12D-A134-01 b3696964-30e2-4342-914d-d7c2f5c88322 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B07_755872.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12D-A135-09 a2f9165d-9fe7-492e-9b4c-3cb4200c6e85 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12D-A135-09 a2f9165d-9fe7-492e-9b4c-3cb4200c6e85 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12D-A138-05 932d8a30-bbea-434a-b4a3-51a526cd43f0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12D-A138-05 932d8a30-bbea-434a-b4a3-51a526cd43f0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324071_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12D-A138-05 932d8a30-bbea-434a-b4a3-51a526cd43f0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324071_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12D-A138-05 932d8a30-bbea-434a-b4a3-51a526cd43f0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-2.TCGA-C8-A1HM-01A-12D-A138-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0 103 07-NOV-11 05.19.10.670000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12D-A138-05 932d8a30-bbea-434a-b4a3-51a526cd43f0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-3.TCGA-C8-A1HM-01A-12D-A138-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0 103 07-NOV-11 05.59.32.897000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12R-A136-13 865dc154-66f0-440b-874a-8572397fd17f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12R-A136-13 865dc154-66f0-440b-874a-8572397fd17f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A1HM-01A-12R-A136-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12R-A136-13 865dc154-66f0-440b-874a-8572397fd17f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A1HM-01A-12R-A136-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12R-A137-07 eb908a6f-d6f2-40ef-90da-97438cd2281e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12R-A137-07 eb908a6f-d6f2-40ef-90da-97438cd2281e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013081_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 103 24-JUL-11 07.52.05.474000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12R-A137-07 eb908a6f-d6f2-40ef-90da-97438cd2281e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013081_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 103 24-JUL-11 07.49.44.366000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12R-A137-07 eb908a6f-d6f2-40ef-90da-97438cd2281e Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013081_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 103 24-JUL-11 07.50.27.960000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12R-A137-07 eb908a6f-d6f2-40ef-90da-97438cd2281e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451392.TCGA-C8-A1HM-01A-12R-A137-07.110801_UNC13-SN749_0088_AD0DTHABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12R-A137-07 eb908a6f-d6f2-40ef-90da-97438cd2281e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451405.TCGA-C8-A1HM-01A-12R-A137-07.110801_UNC13-SN749_0088_AD0DTHABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12R-A137-07 eb908a6f-d6f2-40ef-90da-97438cd2281e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451454.TCGA-C8-A1HM-01A-12R-A137-07.110801_UNC13-SN749_0088_AD0DTHABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-01A TCGA-C8-A1HM-01A-12W-A14P-09 e104659b-4f5b-45cf-a001-213c48957e16 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-10A TCGA-C8-A1HM-10A-01D-A133-02 5a71fbe5-19ab-45d8-885f-200e52a1f003 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-10A TCGA-C8-A1HM-10A-01D-A134-01 3dbd83fd-193b-4f6d-8b58-d06446a135fb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-10A TCGA-C8-A1HM-10A-01D-A134-01 3dbd83fd-193b-4f6d-8b58-d06446a135fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D09_755908.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-C8-A1HM TCGA-C8-A1HM-10A TCGA-C8-A1HM-10A-01D-A134-01 3dbd83fd-193b-4f6d-8b58-d06446a135fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D09_755908.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HM TCGA-C8-A1HM-10A TCGA-C8-A1HM-10A-01D-A134-01 3dbd83fd-193b-4f6d-8b58-d06446a135fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D09_755908.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HM TCGA-C8-A1HM-10A TCGA-C8-A1HM-10A-01D-A134-01 3dbd83fd-193b-4f6d-8b58-d06446a135fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D09_755908.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HM TCGA-C8-A1HM-10A TCGA-C8-A1HM-10A-01D-A134-01 3dbd83fd-193b-4f6d-8b58-d06446a135fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D09_755908.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HM TCGA-C8-A1HM-10A TCGA-C8-A1HM-10A-01D-A134-01 3dbd83fd-193b-4f6d-8b58-d06446a135fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D09_755908.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HM TCGA-C8-A1HM-10A TCGA-C8-A1HM-10A-01D-A134-01 3dbd83fd-193b-4f6d-8b58-d06446a135fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D09_755908.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HM TCGA-C8-A1HM-10A TCGA-C8-A1HM-10A-01D-A134-01 3dbd83fd-193b-4f6d-8b58-d06446a135fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D09_755908.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-10A TCGA-C8-A1HM-10A-01D-A135-09 96166aa5-1642-4a59-a88e-9b9f9291b453 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-10A TCGA-C8-A1HM-10A-01D-A135-09 96166aa5-1642-4a59-a88e-9b9f9291b453 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A1HM TCGA-C8-A1HM-10A TCGA-C8-A1HM-10A-01W-A14P-09 fc54dee5-0d9f-4d50-bff6-0a94debca684 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11D-A133-02 7ef0319c-b213-456a-af51-82e05b069a6e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11D-A134-01 65261a78-78b6-4276-be43-f7e7ef91829d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11D-A134-01 65261a78-78b6-4276-be43-f7e7ef91829d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G04_755938.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11D-A134-01 65261a78-78b6-4276-be43-f7e7ef91829d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G04_755938.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11D-A134-01 65261a78-78b6-4276-be43-f7e7ef91829d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G04_755938.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11D-A134-01 65261a78-78b6-4276-be43-f7e7ef91829d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G04_755938.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11D-A134-01 65261a78-78b6-4276-be43-f7e7ef91829d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G04_755938.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11D-A134-01 65261a78-78b6-4276-be43-f7e7ef91829d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G04_755938.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11D-A134-01 65261a78-78b6-4276-be43-f7e7ef91829d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G04_755938.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11D-A134-01 65261a78-78b6-4276-be43-f7e7ef91829d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G04_755938.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11D-A135-09 a2576147-28eb-460f-9b97-916892d801e2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11D-A135-09 a2576147-28eb-460f-9b97-916892d801e2 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11D-A138-05 6625c3af-44ea-460c-b8ed-296f79495e15 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11D-A138-05 6625c3af-44ea-460c-b8ed-296f79495e15 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324071_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11D-A138-05 6625c3af-44ea-460c-b8ed-296f79495e15 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324071_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11D-A138-05 6625c3af-44ea-460c-b8ed-296f79495e15 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-2.TCGA-C8-A1HN-01A-11D-A138-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0 103 07-NOV-11 05.19.10.670000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11D-A138-05 6625c3af-44ea-460c-b8ed-296f79495e15 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-3.TCGA-C8-A1HN-01A-11D-A138-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0 103 07-NOV-11 05.59.32.897000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11R-A136-13 96a19029-df75-4014-9c03-8d3c23641c40 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11R-A136-13 96a19029-df75-4014-9c03-8d3c23641c40 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A1HN-01A-11R-A136-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11R-A136-13 96a19029-df75-4014-9c03-8d3c23641c40 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A1HN-01A-11R-A136-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11R-A137-07 4795628e-50d8-41e0-b3c6-00fe4600dc5d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11R-A137-07 4795628e-50d8-41e0-b3c6-00fe4600dc5d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013079_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 103 24-JUL-11 07.52.05.474000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11R-A137-07 4795628e-50d8-41e0-b3c6-00fe4600dc5d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013079_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 103 24-JUL-11 07.49.44.366000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11R-A137-07 4795628e-50d8-41e0-b3c6-00fe4600dc5d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013079_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 103 24-JUL-11 07.50.27.960000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11R-A137-07 4795628e-50d8-41e0-b3c6-00fe4600dc5d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451697.TCGA-C8-A1HN-01A-11R-A137-07.110801_UNC13-SN749_0088_AD0DTHABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11R-A137-07 4795628e-50d8-41e0-b3c6-00fe4600dc5d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451707.TCGA-C8-A1HN-01A-11R-A137-07.110801_UNC13-SN749_0088_AD0DTHABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11R-A137-07 4795628e-50d8-41e0-b3c6-00fe4600dc5d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451723.TCGA-C8-A1HN-01A-11R-A137-07.110801_UNC13-SN749_0088_AD0DTHABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-01A TCGA-C8-A1HN-01A-11W-A14P-09 0c1f6186-cf21-4960-8461-124bc44f196b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-10A TCGA-C8-A1HN-10A-01D-A133-02 1bd6552a-470b-4469-8ed0-1111805c1250 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-10A TCGA-C8-A1HN-10A-01D-A134-01 dc06b3c9-596b-4e83-af15-f88d3c7e0d67 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-10A TCGA-C8-A1HN-10A-01D-A134-01 dc06b3c9-596b-4e83-af15-f88d3c7e0d67 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D08_755838.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-C8-A1HN TCGA-C8-A1HN-10A TCGA-C8-A1HN-10A-01D-A134-01 dc06b3c9-596b-4e83-af15-f88d3c7e0d67 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D08_755838.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HN TCGA-C8-A1HN-10A TCGA-C8-A1HN-10A-01D-A134-01 dc06b3c9-596b-4e83-af15-f88d3c7e0d67 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D08_755838.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HN TCGA-C8-A1HN-10A TCGA-C8-A1HN-10A-01D-A134-01 dc06b3c9-596b-4e83-af15-f88d3c7e0d67 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D08_755838.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HN TCGA-C8-A1HN-10A TCGA-C8-A1HN-10A-01D-A134-01 dc06b3c9-596b-4e83-af15-f88d3c7e0d67 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D08_755838.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HN TCGA-C8-A1HN-10A TCGA-C8-A1HN-10A-01D-A134-01 dc06b3c9-596b-4e83-af15-f88d3c7e0d67 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D08_755838.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HN TCGA-C8-A1HN-10A TCGA-C8-A1HN-10A-01D-A134-01 dc06b3c9-596b-4e83-af15-f88d3c7e0d67 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D08_755838.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-C8-A1HN TCGA-C8-A1HN-10A TCGA-C8-A1HN-10A-01D-A134-01 dc06b3c9-596b-4e83-af15-f88d3c7e0d67 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D08_755838.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-10A TCGA-C8-A1HN-10A-01D-A135-09 66a18ff8-0467-4423-aca0-0cbcec0e4513 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-10A TCGA-C8-A1HN-10A-01D-A135-09 66a18ff8-0467-4423-aca0-0cbcec0e4513 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-C8-A1HN TCGA-C8-A1HN-10A TCGA-C8-A1HN-10A-01W-A14P-09 632ddc59-42fd-4838-93b9-c07e56f90976 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-C8-A1HO TCGA-C8-A1HO-01A TCGA-C8-A1HO-01A-11D-A13I-02 14d911d7-416e-4cd7-b883-1d34f5dd35f1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HO TCGA-C8-A1HO-01A TCGA-C8-A1HO-01A-11D-A13J-01 8cd0933f-c93e-4265-a6c4-6892f407ced9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HO TCGA-C8-A1HO-01A TCGA-C8-A1HO-01A-11D-A13J-01 8cd0933f-c93e-4265-a6c4-6892f407ced9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A03_772170.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-C8-A1HO TCGA-C8-A1HO-01A TCGA-C8-A1HO-01A-11D-A13J-01 8cd0933f-c93e-4265-a6c4-6892f407ced9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A03_772170.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HO TCGA-C8-A1HO-01A TCGA-C8-A1HO-01A-11D-A13J-01 8cd0933f-c93e-4265-a6c4-6892f407ced9 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A03_772170.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HO TCGA-C8-A1HO-01A TCGA-C8-A1HO-01A-11D-A13J-01 8cd0933f-c93e-4265-a6c4-6892f407ced9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A03_772170.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HO TCGA-C8-A1HO-01A TCGA-C8-A1HO-01A-11D-A13J-01 8cd0933f-c93e-4265-a6c4-6892f407ced9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A03_772170.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-C8-A1HO TCGA-C8-A1HO-01A TCGA-C8-A1HO-01A-11D-A13J-01 8cd0933f-c93e-4265-a6c4-6892f407ced9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A03_772170.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-C8-A1HO TCGA-C8-A1HO-01A TCGA-C8-A1HO-01A-11D-A13K-05 ff4a7e4e-a4b7-4867-93d4-1e3f06479071 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HO TCGA-C8-A1HO-01A TCGA-C8-A1HO-01A-11D-A13K-05 ff4a7e4e-a4b7-4867-93d4-1e3f06479071 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818139_R05C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-C8-A1HO TCGA-C8-A1HO-01A TCGA-C8-A1HO-01A-11D-A13K-05 ff4a7e4e-a4b7-4867-93d4-1e3f06479071 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-C8-A1HO-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-C8-A1HO TCGA-C8-A1HO-01A TCGA-C8-A1HO-01A-11D-A13L-09 c6fb921c-78fe-4852-b2a5-edd5a02ae923 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HO TCGA-C8-A1HO-01A TCGA-C8-A1HO-01A-11R-A13P-13 3f1cb95c-71a0-4da1-b117-e7c9b2042492 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-C8-A1HO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-C8-A1HO TCGA-C8-A1HO-01A TCGA-C8-A1HO-01A-11R-A13P-13 3f1cb95c-71a0-4da1-b117-e7c9b2042492 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A1HO-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A1HO TCGA-C8-A1HO-01A TCGA-C8-A1HO-01A-11R-A13P-13 3f1cb95c-71a0-4da1-b117-e7c9b2042492 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_400721.TCGA-C8-A1HO-01A-11R-A13Q-07.110729_UNC9-SN296_0211_BC046VABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A1HO TCGA-C8-A1HO-01A TCGA-C8-A1HO-01A-11R-A13Q-07 1d8ecbae-6996-4d9d-bff8-ac761a8309ea RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_400749.TCGA-C8-A1HO-01A-11R-A13Q-07.110729_UNC9-SN296_0211_BC046VABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A1HO TCGA-C8-A1HO-01A TCGA-C8-A1HO-01A-11R-A13Q-07 1d8ecbae-6996-4d9d-bff8-ac761a8309ea RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A26V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A26V TCGA-C8-A26V-10A TCGA-C8-A26V-10A-01D-A16B-02 38146daf-e57e-41cc-97f5-0cf7d11bafec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A26V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A26V TCGA-C8-A26V-10A TCGA-C8-A26V-10A-01D-A16C-01 3c7826a3-12c1-439f-bf3c-578c6d2d779d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A26V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A26V TCGA-C8-A26V-10A TCGA-C8-A26V-10A-01D-A16C-01 3c7826a3-12c1-439f-bf3c-578c6d2d779d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G05_799854.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-C8-A26V TCGA-C8-A26V-10A TCGA-C8-A26V-10A-01D-A16C-01 3c7826a3-12c1-439f-bf3c-578c6d2d779d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G05_799854.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26V TCGA-C8-A26V-10A TCGA-C8-A26V-10A-01D-A16C-01 3c7826a3-12c1-439f-bf3c-578c6d2d779d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G05_799854.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26V TCGA-C8-A26V-10A TCGA-C8-A26V-10A-01D-A16C-01 3c7826a3-12c1-439f-bf3c-578c6d2d779d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G05_799854.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26V TCGA-C8-A26V-10A TCGA-C8-A26V-10A-01D-A16C-01 3c7826a3-12c1-439f-bf3c-578c6d2d779d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G05_799854.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26V TCGA-C8-A26V-10A TCGA-C8-A26V-10A-01D-A16C-01 3c7826a3-12c1-439f-bf3c-578c6d2d779d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G05_799854.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26V TCGA-C8-A26V-10A TCGA-C8-A26V-10A-01D-A16C-01 3c7826a3-12c1-439f-bf3c-578c6d2d779d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G05_799854.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26V TCGA-C8-A26V-10A TCGA-C8-A26V-10A-01D-A16C-01 3c7826a3-12c1-439f-bf3c-578c6d2d779d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G05_799854.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-C8-A26V TCGA-C8-A26V-10A TCGA-C8-A26V-10A-01D-A16D-09 c546d2fb-09e7-4b5d-a39e-24d6a26e6341 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A26V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A26V TCGA-C8-A26V-10A TCGA-C8-A26V-10A-01W-A189-09 f498a681-91cb-42a4-adcb-311a7387f97c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A26V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A26W TCGA-C8-A26W-01A TCGA-C8-A26W-01A-11D-A16B-02 a8228f62-db7c-4083-b654-02bb433d645c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A26W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A26W TCGA-C8-A26W-01A TCGA-C8-A26W-01A-11D-A16C-01 6311b4c7-cb03-4c2a-a3d0-039d362c4d4d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A26W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A26W TCGA-C8-A26W-01A TCGA-C8-A26W-01A-11D-A16C-01 6311b4c7-cb03-4c2a-a3d0-039d362c4d4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A10_799984.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-C8-A26W TCGA-C8-A26W-01A TCGA-C8-A26W-01A-11D-A16C-01 6311b4c7-cb03-4c2a-a3d0-039d362c4d4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A10_799984.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26W TCGA-C8-A26W-01A TCGA-C8-A26W-01A-11D-A16C-01 6311b4c7-cb03-4c2a-a3d0-039d362c4d4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A10_799984.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26W TCGA-C8-A26W-01A TCGA-C8-A26W-01A-11D-A16C-01 6311b4c7-cb03-4c2a-a3d0-039d362c4d4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A10_799984.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26W TCGA-C8-A26W-01A TCGA-C8-A26W-01A-11D-A16C-01 6311b4c7-cb03-4c2a-a3d0-039d362c4d4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A10_799984.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26W TCGA-C8-A26W-01A TCGA-C8-A26W-01A-11D-A16C-01 6311b4c7-cb03-4c2a-a3d0-039d362c4d4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A10_799984.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26W TCGA-C8-A26W-01A TCGA-C8-A26W-01A-11D-A16C-01 6311b4c7-cb03-4c2a-a3d0-039d362c4d4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A10_799984.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26W TCGA-C8-A26W-01A TCGA-C8-A26W-01A-11D-A16C-01 6311b4c7-cb03-4c2a-a3d0-039d362c4d4d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A10_799984.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-C8-A26W TCGA-C8-A26W-01A TCGA-C8-A26W-01A-11D-A16D-09 d3db354e-f22c-4576-a7d7-6515f1c11002 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A26W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A26W TCGA-C8-A26W-01A TCGA-C8-A26W-01A-11D-A16G-05 75733c59-6640-408d-a1a7-65639b95aeae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A26W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A26W TCGA-C8-A26W-01A TCGA-C8-A26W-01A-11D-A16G-05 75733c59-6640-408d-a1a7-65639b95aeae DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009060_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-C8-A26W TCGA-C8-A26W-01A TCGA-C8-A26W-01A-11D-A16G-05 75733c59-6640-408d-a1a7-65639b95aeae DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009060_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-C8-A26W TCGA-C8-A26W-01A TCGA-C8-A26W-01A-11D-A16G-05 75733c59-6640-408d-a1a7-65639b95aeae DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-2.TCGA-C8-A26W-01A-11D-A16G-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0 147 07-NOV-11 05.10.40.874000000 PM TCGA-C8-A26W TCGA-C8-A26W-01A TCGA-C8-A26W-01A-11D-A16G-05 75733c59-6640-408d-a1a7-65639b95aeae DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A26W-01A-11R-A16E-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A26W TCGA-C8-A26W-01A TCGA-C8-A26W-01A-11R-A16E-13 f68a57eb-0c4f-4e38-93b7-0848a26282df miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A26W-01A-11R-A16E-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A26W TCGA-C8-A26W-01A TCGA-C8-A26W-01A-11R-A16F-07 bd304a35-2d0c-4b11-bd62-3db480c1e730 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A26W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A26W TCGA-C8-A26W-10A TCGA-C8-A26W-10A-01D-A16C-01 89929abc-a550-49c0-bf6c-0a002f05df48 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_C06_800002.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-C8-A26W TCGA-C8-A26W-10A TCGA-C8-A26W-10A-01D-A16C-01 89929abc-a550-49c0-bf6c-0a002f05df48 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_C06_800002.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26W TCGA-C8-A26W-10A TCGA-C8-A26W-10A-01D-A16C-01 89929abc-a550-49c0-bf6c-0a002f05df48 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_C06_800002.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26W TCGA-C8-A26W-10A TCGA-C8-A26W-10A-01D-A16C-01 89929abc-a550-49c0-bf6c-0a002f05df48 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_C06_800002.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26W TCGA-C8-A26W-10A TCGA-C8-A26W-10A-01D-A16C-01 89929abc-a550-49c0-bf6c-0a002f05df48 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_C06_800002.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26W TCGA-C8-A26W-10A TCGA-C8-A26W-10A-01D-A16C-01 89929abc-a550-49c0-bf6c-0a002f05df48 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_C06_800002.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-C8-A26W TCGA-C8-A26W-10A TCGA-C8-A26W-10A-01D-A16D-09 327119a0-07dd-46c3-8b02-733bfaa5f959 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A26W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A26W TCGA-C8-A26W-10A TCGA-C8-A26W-10A-01W-A189-09 e05d1156-4214-4376-8a19-cd6dc4b447a2 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A26X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A26X TCGA-C8-A26X-01A TCGA-C8-A26X-01A-31D-A16C-01 95c7e7dd-400b-4864-8593-40f348078b3a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A12_799958.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-C8-A26X TCGA-C8-A26X-01A TCGA-C8-A26X-01A-31D-A16C-01 95c7e7dd-400b-4864-8593-40f348078b3a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A12_799958.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26X TCGA-C8-A26X-01A TCGA-C8-A26X-01A-31D-A16C-01 95c7e7dd-400b-4864-8593-40f348078b3a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A12_799958.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26X TCGA-C8-A26X-01A TCGA-C8-A26X-01A-31D-A16C-01 95c7e7dd-400b-4864-8593-40f348078b3a SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A12_799958.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26X TCGA-C8-A26X-01A TCGA-C8-A26X-01A-31D-A16C-01 95c7e7dd-400b-4864-8593-40f348078b3a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A12_799958.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26X TCGA-C8-A26X-01A TCGA-C8-A26X-01A-31D-A16C-01 95c7e7dd-400b-4864-8593-40f348078b3a SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A26Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A26Y TCGA-C8-A26Y-10A TCGA-C8-A26Y-10A-01D-A16C-01 9dd309a7-683b-4515-a7ec-d6adaab4fcf4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E10_799986.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-C8-A26Y TCGA-C8-A26Y-10A TCGA-C8-A26Y-10A-01D-A16C-01 9dd309a7-683b-4515-a7ec-d6adaab4fcf4 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D05_799868.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-01A TCGA-C8-A26Z-01A-11D-A16C-01 22d25b42-1b1e-4758-a192-6e3702414cc8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D05_799868.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-01A TCGA-C8-A26Z-01A-11D-A16C-01 22d25b42-1b1e-4758-a192-6e3702414cc8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D05_799868.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-01A TCGA-C8-A26Z-01A-11D-A16C-01 22d25b42-1b1e-4758-a192-6e3702414cc8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D05_799868.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-01A TCGA-C8-A26Z-01A-11D-A16C-01 22d25b42-1b1e-4758-a192-6e3702414cc8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D05_799868.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-01A TCGA-C8-A26Z-01A-11D-A16C-01 22d25b42-1b1e-4758-a192-6e3702414cc8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D05_799868.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-01A TCGA-C8-A26Z-01A-11D-A16C-01 22d25b42-1b1e-4758-a192-6e3702414cc8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D05_799868.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-01A TCGA-C8-A26Z-01A-11D-A16D-09 fa4f7af6-380f-4dbd-ba6a-8c0d22f56a9c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A26Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-01A TCGA-C8-A26Z-01A-11D-A16G-05 a22fbe01-8e66-4568-9677-ac86bcb10da2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A26Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-01A TCGA-C8-A26Z-01A-11D-A16G-05 a22fbe01-8e66-4568-9677-ac86bcb10da2 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009060_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-01A TCGA-C8-A26Z-01A-11D-A16G-05 a22fbe01-8e66-4568-9677-ac86bcb10da2 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009060_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-01A TCGA-C8-A26Z-01A-11D-A16G-05 a22fbe01-8e66-4568-9677-ac86bcb10da2 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-2.TCGA-C8-A26Z-01A-11D-A16G-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0 147 07-NOV-11 05.10.40.874000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-01A TCGA-C8-A26Z-01A-11D-A16G-05 a22fbe01-8e66-4568-9677-ac86bcb10da2 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-3.TCGA-C8-A26Z-01A-11D-A16G-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0 147 07-NOV-11 05.48.07.389000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-01A TCGA-C8-A26Z-01A-11R-A16E-13 f378516d-931b-4d3b-a430-e8c64e9a614e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A26Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-01A TCGA-C8-A26Z-01A-11R-A16E-13 f378516d-931b-4d3b-a430-e8c64e9a614e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A26Z-01A-11R-A16E-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-01A TCGA-C8-A26Z-01A-11R-A16E-13 f378516d-931b-4d3b-a430-e8c64e9a614e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A26Z-01A-11R-A16E-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-01A TCGA-C8-A26Z-01A-11R-A16F-07 8213eb8c-db23-4f92-b3d3-07b45eeec76a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A26Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-01A TCGA-C8-A26Z-01A-11R-A16F-07 8213eb8c-db23-4f92-b3d3-07b45eeec76a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_567977.TCGA-C8-A26Z-01A-11R-A16F-07.110926_UNC14-SN744_0172_AB036MABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-01A TCGA-C8-A26Z-01A-11R-A16F-07 8213eb8c-db23-4f92-b3d3-07b45eeec76a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_568091.TCGA-C8-A26Z-01A-11R-A16F-07.110926_UNC14-SN744_0172_AB036MABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-01A TCGA-C8-A26Z-01A-11R-A16F-07 8213eb8c-db23-4f92-b3d3-07b45eeec76a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_568148.TCGA-C8-A26Z-01A-11R-A16F-07.110926_UNC14-SN744_0172_AB036MABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-01A TCGA-C8-A26Z-01A-11W-A189-09 88cff043-c7c1-4117-84b9-9b62640c5115 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A26Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-10A TCGA-C8-A26Z-10A-01D-A16B-02 efa15d24-9105-4399-b5b8-f5ea10a75f0e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A26Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-10A TCGA-C8-A26Z-10A-01D-A16C-01 035bf109-aeb6-44eb-852e-59800a572f0a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A26Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-10A TCGA-C8-A26Z-10A-01D-A16C-01 035bf109-aeb6-44eb-852e-59800a572f0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D07_799848.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-C8-A26Z TCGA-C8-A26Z-10A TCGA-C8-A26Z-10A-01D-A16C-01 035bf109-aeb6-44eb-852e-59800a572f0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D07_799848.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-10A TCGA-C8-A26Z-10A-01D-A16C-01 035bf109-aeb6-44eb-852e-59800a572f0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D07_799848.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-10A TCGA-C8-A26Z-10A-01D-A16C-01 035bf109-aeb6-44eb-852e-59800a572f0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D07_799848.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-10A TCGA-C8-A26Z-10A-01D-A16C-01 035bf109-aeb6-44eb-852e-59800a572f0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D07_799848.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-10A TCGA-C8-A26Z-10A-01D-A16C-01 035bf109-aeb6-44eb-852e-59800a572f0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D07_799848.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-10A TCGA-C8-A26Z-10A-01D-A16C-01 035bf109-aeb6-44eb-852e-59800a572f0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D07_799848.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-10A TCGA-C8-A26Z-10A-01D-A16C-01 035bf109-aeb6-44eb-852e-59800a572f0a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D07_799848.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-10A TCGA-C8-A26Z-10A-01D-A16D-09 16215f35-017a-47a8-a0d4-1536a45430bb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A26Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A26Z TCGA-C8-A26Z-10A TCGA-C8-A26Z-10A-01W-A189-09 b0715e4e-5403-415a-af5d-c887137f792f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A26Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A273 TCGA-C8-A273-01A TCGA-C8-A273-01A-11D-A16B-02 fc930610-406c-456e-a501-f845021ab317 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A273.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A273 TCGA-C8-A273-01A TCGA-C8-A273-01A-11D-A16C-01 fb139187-1f6a-4354-8e25-279dc4960116 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A273.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A273 TCGA-C8-A273-01A TCGA-C8-A273-01A-11D-A16C-01 fb139187-1f6a-4354-8e25-279dc4960116 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A06_799976.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-C8-A273 TCGA-C8-A273-01A TCGA-C8-A273-01A-11D-A16C-01 fb139187-1f6a-4354-8e25-279dc4960116 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A06_799976.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A273 TCGA-C8-A273-01A TCGA-C8-A273-01A-11D-A16C-01 fb139187-1f6a-4354-8e25-279dc4960116 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A06_799976.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A273 TCGA-C8-A273-01A TCGA-C8-A273-01A-11D-A16C-01 fb139187-1f6a-4354-8e25-279dc4960116 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A06_799976.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A273 TCGA-C8-A273-01A TCGA-C8-A273-01A-11D-A16C-01 fb139187-1f6a-4354-8e25-279dc4960116 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A06_799976.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A273 TCGA-C8-A273-01A TCGA-C8-A273-01A-11D-A16C-01 fb139187-1f6a-4354-8e25-279dc4960116 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_A06_799976.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-C8-A273 TCGA-C8-A273-01A TCGA-C8-A273-01A-11D-A16D-09 c5e6f325-5fd0-4cff-8eaf-6e23e016f605 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A273.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A273 TCGA-C8-A273-01A TCGA-C8-A273-01A-11D-A16G-05 13d03a7a-0ed0-44f4-975c-85ff5af0843d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A273.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A273 TCGA-C8-A273-01A TCGA-C8-A273-01A-11D-A16G-05 13d03a7a-0ed0-44f4-975c-85ff5af0843d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009060_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-C8-A273 TCGA-C8-A273-01A TCGA-C8-A273-01A-11D-A16G-05 13d03a7a-0ed0-44f4-975c-85ff5af0843d DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-3.TCGA-C8-A273-01A-11D-A16G-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0 147 07-NOV-11 05.48.07.389000000 PM TCGA-C8-A273 TCGA-C8-A273-01A TCGA-C8-A273-01A-11R-A16E-13 e332a2b5-fce9-4e73-b657-added4dd0860 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A273.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A273 TCGA-C8-A273-01A TCGA-C8-A273-01A-11R-A16E-13 e332a2b5-fce9-4e73-b657-added4dd0860 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A273-01A-11R-A16E-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A273 TCGA-C8-A273-01A TCGA-C8-A273-01A-11R-A16E-13 e332a2b5-fce9-4e73-b657-added4dd0860 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A273-01A-11R-A16E-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A273 TCGA-C8-A273-01A TCGA-C8-A273-01A-11R-A16F-07 c2e4eb91-bc79-4c8a-beef-4c5abc61d2fa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A273.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A273 TCGA-C8-A273-01A TCGA-C8-A273-01A-11R-A16F-07 c2e4eb91-bc79-4c8a-beef-4c5abc61d2fa RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_567968.TCGA-C8-A273-01A-11R-A16F-07.110926_UNC14-SN744_0172_AB036MABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A273 TCGA-C8-A273-01A TCGA-C8-A273-01A-11R-A16F-07 c2e4eb91-bc79-4c8a-beef-4c5abc61d2fa RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A273.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A273 TCGA-C8-A273-10A TCGA-C8-A273-10A-01D-A16B-02 9b0f1d95-5483-468a-8991-763d1d78a610 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A273.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A273 TCGA-C8-A273-10A TCGA-C8-A273-10A-01D-A16C-01 7060fe8f-b4ef-4bc5-826e-f2ae11acd1eb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A273.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A273 TCGA-C8-A273-10A TCGA-C8-A273-10A-01D-A16C-01 7060fe8f-b4ef-4bc5-826e-f2ae11acd1eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D10_799948.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-C8-A273 TCGA-C8-A273-10A TCGA-C8-A273-10A-01D-A16C-01 7060fe8f-b4ef-4bc5-826e-f2ae11acd1eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D10_799948.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A273 TCGA-C8-A273-10A TCGA-C8-A273-10A-01D-A16C-01 7060fe8f-b4ef-4bc5-826e-f2ae11acd1eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D10_799948.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A273 TCGA-C8-A273-10A TCGA-C8-A273-10A-01D-A16C-01 7060fe8f-b4ef-4bc5-826e-f2ae11acd1eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D10_799948.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A273 TCGA-C8-A273-10A TCGA-C8-A273-10A-01D-A16C-01 7060fe8f-b4ef-4bc5-826e-f2ae11acd1eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D10_799948.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A273 TCGA-C8-A273-10A TCGA-C8-A273-10A-01D-A16C-01 7060fe8f-b4ef-4bc5-826e-f2ae11acd1eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D10_799948.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A273 TCGA-C8-A273-10A TCGA-C8-A273-10A-01D-A16C-01 7060fe8f-b4ef-4bc5-826e-f2ae11acd1eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D10_799948.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A273 TCGA-C8-A273-10A TCGA-C8-A273-10A-01D-A16C-01 7060fe8f-b4ef-4bc5-826e-f2ae11acd1eb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D10_799948.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-C8-A273 TCGA-C8-A273-10A TCGA-C8-A273-10A-01D-A16D-09 938d7d67-f5e1-4fce-aacd-9224ed1a882f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A273.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A273 TCGA-C8-A273-10A TCGA-C8-A273-10A-01W-A189-09 c038b76d-3b9f-4618-aa6e-a2d5a0ab6b7a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A273.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A274 TCGA-C8-A274-01A TCGA-C8-A274-01A-11D-A16B-02 715893b7-62ec-4793-a2c6-36c31f2fccc5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A274.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A274 TCGA-C8-A274-01A TCGA-C8-A274-01A-11D-A16C-01 a6343496-02a8-41be-ba50-25df086b21f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A274.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A274 TCGA-C8-A274-01A TCGA-C8-A274-01A-11D-A16C-01 a6343496-02a8-41be-ba50-25df086b21f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B10_799940.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-C8-A274 TCGA-C8-A274-01A TCGA-C8-A274-01A-11D-A16C-01 a6343496-02a8-41be-ba50-25df086b21f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B10_799940.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A274 TCGA-C8-A274-01A TCGA-C8-A274-01A-11D-A16C-01 a6343496-02a8-41be-ba50-25df086b21f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B10_799940.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A274 TCGA-C8-A274-01A TCGA-C8-A274-01A-11D-A16C-01 a6343496-02a8-41be-ba50-25df086b21f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B10_799940.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A274 TCGA-C8-A274-01A TCGA-C8-A274-01A-11D-A16C-01 a6343496-02a8-41be-ba50-25df086b21f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B10_799940.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A274 TCGA-C8-A274-01A TCGA-C8-A274-01A-11D-A16C-01 a6343496-02a8-41be-ba50-25df086b21f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B10_799940.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A274 TCGA-C8-A274-01A TCGA-C8-A274-01A-11D-A16C-01 a6343496-02a8-41be-ba50-25df086b21f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B10_799940.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A274 TCGA-C8-A274-01A TCGA-C8-A274-01A-11D-A16C-01 a6343496-02a8-41be-ba50-25df086b21f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B10_799940.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-C8-A274 TCGA-C8-A274-01A TCGA-C8-A274-01A-11D-A16D-09 5e6e7c20-47b3-4f0e-a3c7-8293993e39cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A274.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A274 TCGA-C8-A274-01A TCGA-C8-A274-01A-11D-A16G-05 50b1a8f9-5a53-46ed-b2ec-764b9ef1f576 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A274.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A274 TCGA-C8-A274-01A TCGA-C8-A274-01A-11D-A16G-05 50b1a8f9-5a53-46ed-b2ec-764b9ef1f576 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009060_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-C8-A274 TCGA-C8-A274-01A TCGA-C8-A274-01A-11D-A16G-05 50b1a8f9-5a53-46ed-b2ec-764b9ef1f576 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009060_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-C8-A274 TCGA-C8-A274-01A TCGA-C8-A274-01A-11D-A16G-05 50b1a8f9-5a53-46ed-b2ec-764b9ef1f576 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-2.TCGA-C8-A274-01A-11D-A16G-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0 147 07-NOV-11 05.10.40.874000000 PM TCGA-C8-A274 TCGA-C8-A274-01A TCGA-C8-A274-01A-11D-A16G-05 50b1a8f9-5a53-46ed-b2ec-764b9ef1f576 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-3.TCGA-C8-A274-01A-11D-A16G-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0 147 07-NOV-11 05.48.07.389000000 PM TCGA-C8-A274 TCGA-C8-A274-01A TCGA-C8-A274-01A-11R-A16E-13 a54464ec-f1fb-4491-a4aa-5b6ab758be0e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A274.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A274 TCGA-C8-A274-01A TCGA-C8-A274-01A-11R-A16E-13 a54464ec-f1fb-4491-a4aa-5b6ab758be0e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A274-01A-11R-A16E-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A274 TCGA-C8-A274-01A TCGA-C8-A274-01A-11R-A16E-13 a54464ec-f1fb-4491-a4aa-5b6ab758be0e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A274-01A-11R-A16E-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A274 TCGA-C8-A274-01A TCGA-C8-A274-01A-11R-A16F-07 f9521be2-aaaf-414c-a906-3ba53a060614 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A274.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A274 TCGA-C8-A274-01A TCGA-C8-A274-01A-11R-A16F-07 f9521be2-aaaf-414c-a906-3ba53a060614 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_567983.TCGA-C8-A274-01A-11R-A16F-07.110926_UNC14-SN744_0172_AB036MABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A274 TCGA-C8-A274-01A TCGA-C8-A274-01A-11R-A16F-07 f9521be2-aaaf-414c-a906-3ba53a060614 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_568077.TCGA-C8-A274-01A-11R-A16F-07.110926_UNC14-SN744_0172_AB036MABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A274 TCGA-C8-A274-01A TCGA-C8-A274-01A-11R-A16F-07 f9521be2-aaaf-414c-a906-3ba53a060614 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_568161.TCGA-C8-A274-01A-11R-A16F-07.110926_UNC14-SN744_0172_AB036MABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A274 TCGA-C8-A274-01A TCGA-C8-A274-01A-11W-A189-09 0c8bb9ae-a340-4bff-a224-1dde2defe4c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A274.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A274 TCGA-C8-A274-10A TCGA-C8-A274-10A-01D-A16B-02 6aea57c7-892e-4273-bfa6-d057974ff292 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A274.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A274 TCGA-C8-A274-10A TCGA-C8-A274-10A-01D-A16C-01 592d8f67-7f0d-4af2-84fa-91af4f00a087 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A274.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D12_799862.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D12_799862.ismpolish.data.txt'. TCGA-C8-A274 TCGA-C8-A274-10A TCGA-C8-A274-10A-01D-A16C-01 592d8f67-7f0d-4af2-84fa-91af4f00a087 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D12_799862.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D12_799862.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D12_799862.ismpolish.data.txt'. TCGA-C8-A274 TCGA-C8-A274-10A TCGA-C8-A274-10A-01D-A16C-01 592d8f67-7f0d-4af2-84fa-91af4f00a087 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D12_799862.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D12_799862.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D12_799862.ismpolish.data.txt'. TCGA-C8-A274 TCGA-C8-A274-10A TCGA-C8-A274-10A-01D-A16D-09 88dcd89c-7af1-48c2-9973-4ffee5c6ee50 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A274.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A274 TCGA-C8-A274-10A TCGA-C8-A274-10A-01W-A189-09 2e1abff1-45cc-4022-afc6-84a30ea41499 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A274.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A275 TCGA-C8-A275-01A TCGA-C8-A275-01A-21D-A16B-02 4138a8cb-05cb-434d-8669-dd455e044f3f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A275.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A275 TCGA-C8-A275-01A TCGA-C8-A275-01A-21D-A16C-01 c65dfc5d-a66d-4a43-ae04-4bd8edd88962 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A275.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A275 TCGA-C8-A275-01A TCGA-C8-A275-01A-21D-A16C-01 c65dfc5d-a66d-4a43-ae04-4bd8edd88962 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B11_799970.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-C8-A275 TCGA-C8-A275-01A TCGA-C8-A275-01A-21D-A16C-01 c65dfc5d-a66d-4a43-ae04-4bd8edd88962 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B11_799970.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A275 TCGA-C8-A275-01A TCGA-C8-A275-01A-21D-A16C-01 c65dfc5d-a66d-4a43-ae04-4bd8edd88962 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B11_799970.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A275 TCGA-C8-A275-01A TCGA-C8-A275-01A-21D-A16C-01 c65dfc5d-a66d-4a43-ae04-4bd8edd88962 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B11_799970.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A275 TCGA-C8-A275-01A TCGA-C8-A275-01A-21D-A16C-01 c65dfc5d-a66d-4a43-ae04-4bd8edd88962 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B11_799970.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A275 TCGA-C8-A275-01A TCGA-C8-A275-01A-21D-A16C-01 c65dfc5d-a66d-4a43-ae04-4bd8edd88962 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B11_799970.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A275 TCGA-C8-A275-01A TCGA-C8-A275-01A-21D-A16C-01 c65dfc5d-a66d-4a43-ae04-4bd8edd88962 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B11_799970.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A275 TCGA-C8-A275-01A TCGA-C8-A275-01A-21D-A16C-01 c65dfc5d-a66d-4a43-ae04-4bd8edd88962 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B11_799970.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-C8-A275 TCGA-C8-A275-01A TCGA-C8-A275-01A-21D-A16D-09 7751a837-2656-4e3b-9182-556314c4f6a3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A275.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A275 TCGA-C8-A275-01A TCGA-C8-A275-01A-21D-A16G-05 74eb0425-31dc-4bff-aff0-85a003517d08 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A275.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A275 TCGA-C8-A275-01A TCGA-C8-A275-01A-21D-A16G-05 74eb0425-31dc-4bff-aff0-85a003517d08 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009066_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-C8-A275 TCGA-C8-A275-01A TCGA-C8-A275-01A-21D-A16G-05 74eb0425-31dc-4bff-aff0-85a003517d08 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009066_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-C8-A275 TCGA-C8-A275-01A TCGA-C8-A275-01A-21D-A16G-05 74eb0425-31dc-4bff-aff0-85a003517d08 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-2.TCGA-C8-A275-01A-21D-A16G-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0 147 07-NOV-11 05.10.40.874000000 PM TCGA-C8-A275 TCGA-C8-A275-01A TCGA-C8-A275-01A-21D-A16G-05 74eb0425-31dc-4bff-aff0-85a003517d08 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-3.TCGA-C8-A275-01A-21D-A16G-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0 147 07-NOV-11 05.48.07.389000000 PM TCGA-C8-A275 TCGA-C8-A275-01A TCGA-C8-A275-01A-21R-A16E-13 9bfc8813-6516-4803-8fe7-cae13553790f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A275.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A275 TCGA-C8-A275-01A TCGA-C8-A275-01A-21R-A16E-13 9bfc8813-6516-4803-8fe7-cae13553790f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A275-01A-21R-A16E-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A275 TCGA-C8-A275-01A TCGA-C8-A275-01A-21R-A16E-13 9bfc8813-6516-4803-8fe7-cae13553790f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A275-01A-21R-A16E-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A275 TCGA-C8-A275-01A TCGA-C8-A275-01A-21R-A16F-07 59c6ed76-762c-4caa-98c1-0886b6d9651c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A275.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A275 TCGA-C8-A275-01A TCGA-C8-A275-01A-21R-A16F-07 59c6ed76-762c-4caa-98c1-0886b6d9651c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_568202.TCGA-C8-A275-01A-21R-A16F-07.110926_UNC14-SN744_0172_AB036MABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A275 TCGA-C8-A275-01A TCGA-C8-A275-01A-21R-A16F-07 59c6ed76-762c-4caa-98c1-0886b6d9651c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_568206.TCGA-C8-A275-01A-21R-A16F-07.110926_UNC14-SN744_0172_AB036MABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A275 TCGA-C8-A275-01A TCGA-C8-A275-01A-21R-A16F-07 59c6ed76-762c-4caa-98c1-0886b6d9651c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_568290.TCGA-C8-A275-01A-21R-A16F-07.110926_UNC14-SN744_0172_AB036MABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A275 TCGA-C8-A275-01A TCGA-C8-A275-01A-21W-A189-09 b4d52535-0192-447d-8d53-c16f00df5644 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A275.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A275 TCGA-C8-A275-10A TCGA-C8-A275-10A-01D-A16B-02 92b9551a-7fe0-4fb2-806e-c1462533256f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A275.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A275 TCGA-C8-A275-10A TCGA-C8-A275-10A-01D-A16C-01 3bff92de-e5a2-41ec-9268-19fdfcdc66c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A275.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A275 TCGA-C8-A275-10A TCGA-C8-A275-10A-01D-A16C-01 3bff92de-e5a2-41ec-9268-19fdfcdc66c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G03_799938.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-C8-A275 TCGA-C8-A275-10A TCGA-C8-A275-10A-01D-A16C-01 3bff92de-e5a2-41ec-9268-19fdfcdc66c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G03_799938.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A275 TCGA-C8-A275-10A TCGA-C8-A275-10A-01D-A16C-01 3bff92de-e5a2-41ec-9268-19fdfcdc66c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G03_799938.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A275 TCGA-C8-A275-10A TCGA-C8-A275-10A-01D-A16C-01 3bff92de-e5a2-41ec-9268-19fdfcdc66c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G03_799938.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A275 TCGA-C8-A275-10A TCGA-C8-A275-10A-01D-A16C-01 3bff92de-e5a2-41ec-9268-19fdfcdc66c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G03_799938.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A275 TCGA-C8-A275-10A TCGA-C8-A275-10A-01D-A16C-01 3bff92de-e5a2-41ec-9268-19fdfcdc66c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G03_799938.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A275 TCGA-C8-A275-10A TCGA-C8-A275-10A-01D-A16C-01 3bff92de-e5a2-41ec-9268-19fdfcdc66c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G03_799938.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-C8-A275 TCGA-C8-A275-10A TCGA-C8-A275-10A-01D-A16C-01 3bff92de-e5a2-41ec-9268-19fdfcdc66c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G03_799938.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-C8-A275 TCGA-C8-A275-10A TCGA-C8-A275-10A-01D-A16D-09 8775eb88-4ca6-43b1-b4c1-00767ac1b3de Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A275.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A275 TCGA-C8-A275-10A TCGA-C8-A275-10A-01W-A189-09 b5564ed4-9131-4344-801a-3121544335f3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-C8-A275.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-C8-A278 TCGA-C8-A278-01A TCGA-C8-A278-01A-11D-A165-02 4dd9b993-215d-4099-be6c-d7102bec78a0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-C8-A278.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-C8-A278 TCGA-C8-A278-01A TCGA-C8-A278-01A-11D-A166-01 666a8f56-7f29-4dba-8bdf-f2fccbe78bbd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-C8-A278.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-C8-A278 TCGA-C8-A278-01A TCGA-C8-A278-01A-11D-A166-01 666a8f56-7f29-4dba-8bdf-f2fccbe78bbd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E03_802390.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-C8-A278 TCGA-C8-A278-01A TCGA-C8-A278-01A-11D-A166-01 666a8f56-7f29-4dba-8bdf-f2fccbe78bbd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E03_802390.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-C8-A278 TCGA-C8-A278-01A TCGA-C8-A278-01A-11D-A166-01 666a8f56-7f29-4dba-8bdf-f2fccbe78bbd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E03_802390.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-C8-A278 TCGA-C8-A278-01A TCGA-C8-A278-01A-11D-A166-01 666a8f56-7f29-4dba-8bdf-f2fccbe78bbd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E03_802390.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-C8-A278 TCGA-C8-A278-01A TCGA-C8-A278-01A-11D-A166-01 666a8f56-7f29-4dba-8bdf-f2fccbe78bbd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E03_802390.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-C8-A278 TCGA-C8-A278-01A TCGA-C8-A278-01A-11D-A166-01 666a8f56-7f29-4dba-8bdf-f2fccbe78bbd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E03_802390.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-C8-A278 TCGA-C8-A278-01A TCGA-C8-A278-01A-11D-A166-01 666a8f56-7f29-4dba-8bdf-f2fccbe78bbd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E03_802390.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-C8-A278 TCGA-C8-A278-01A TCGA-C8-A278-01A-11D-A166-01 666a8f56-7f29-4dba-8bdf-f2fccbe78bbd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E03_802390.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-C8-A278 TCGA-C8-A278-01A TCGA-C8-A278-01A-11D-A167-09 7bc48524-1f69-4d85-9d16-6db7844543bd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-C8-A278.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-C8-A278 TCGA-C8-A278-01A TCGA-C8-A278-01A-11D-A16A-05 ab9e0d61-8c2f-436e-bb01-620d4fe95628 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-C8-A278.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-C8-A278 TCGA-C8-A278-01A TCGA-C8-A278-01A-11D-A16A-05 ab9e0d61-8c2f-436e-bb01-620d4fe95628 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833141_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-C8-A278 TCGA-C8-A278-01A TCGA-C8-A278-01A-11D-A16A-05 ab9e0d61-8c2f-436e-bb01-620d4fe95628 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833141_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-C8-A278 TCGA-C8-A278-01A TCGA-C8-A278-01A-11D-A16A-05 ab9e0d61-8c2f-436e-bb01-620d4fe95628 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-2.TCGA-C8-A278-01A-11D-A16A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0 142 07-NOV-11 04.58.21.556000000 PM TCGA-C8-A278 TCGA-C8-A278-01A TCGA-C8-A278-01A-11D-A16A-05 ab9e0d61-8c2f-436e-bb01-620d4fe95628 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-3.TCGA-C8-A278-01A-11D-A16A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0 142 07-NOV-11 06.37.11.245000000 PM TCGA-C8-A278 TCGA-C8-A278-01A TCGA-C8-A278-01A-11R-A168-13 3771d2f1-369a-40b2-aa4a-2875d8c25ec5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-C8-A278.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-C8-A278 TCGA-C8-A278-01A TCGA-C8-A278-01A-11R-A168-13 3771d2f1-369a-40b2-aa4a-2875d8c25ec5 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A278-01A-11R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A278 TCGA-C8-A278-01A TCGA-C8-A278-01A-11R-A168-13 3771d2f1-369a-40b2-aa4a-2875d8c25ec5 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A278-01A-11R-A168-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A278 TCGA-C8-A278-01A TCGA-C8-A278-01A-11R-A169-07 8cdae811-9f3f-4c8b-9fe5-e542d30d40f2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-C8-A278.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-C8-A278 TCGA-C8-A278-01A TCGA-C8-A278-01A-11R-A169-07 8cdae811-9f3f-4c8b-9fe5-e542d30d40f2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_502305.TCGA-C8-A278-01A-11R-A169-07.110907_UNC13-SN749_0110_AB00RJABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A278 TCGA-C8-A278-01A TCGA-C8-A278-01A-11R-A169-07 8cdae811-9f3f-4c8b-9fe5-e542d30d40f2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_502318.TCGA-C8-A278-01A-11R-A169-07.110907_UNC13-SN749_0110_AB00RJABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A278 TCGA-C8-A278-01A TCGA-C8-A278-01A-11R-A169-07 8cdae811-9f3f-4c8b-9fe5-e542d30d40f2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_502347.TCGA-C8-A278-01A-11R-A169-07.110907_UNC13-SN749_0110_AB00RJABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A278 TCGA-C8-A278-01A TCGA-C8-A278-01A-11W-A184-09 6add8c5d-2bdc-499f-91e8-4b8c16c30a81 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-C8-A278.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-C8-A278 TCGA-C8-A278-10A TCGA-C8-A278-10A-01D-A165-02 2c78ba99-88e2-4557-a20c-02479c0c376f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-C8-A278.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-C8-A278 TCGA-C8-A278-10A TCGA-C8-A278-10A-01D-A166-01 43781a2c-0648-4c13-a7c1-4de521062665 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-C8-A278.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-C8-A278 TCGA-C8-A278-10A TCGA-C8-A278-10A-01D-A166-01 43781a2c-0648-4c13-a7c1-4de521062665 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G09_802384.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-C8-A278 TCGA-C8-A278-10A TCGA-C8-A278-10A-01D-A166-01 43781a2c-0648-4c13-a7c1-4de521062665 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G09_802384.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-C8-A278 TCGA-C8-A278-10A TCGA-C8-A278-10A-01D-A166-01 43781a2c-0648-4c13-a7c1-4de521062665 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-C8-A27A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-C8-A27A TCGA-C8-A27A-10B TCGA-C8-A27A-10B-01D-A166-01 cf2fa8a9-e940-40ea-910a-c633d07f4abd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-C8-A27A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-C8-A27A TCGA-C8-A27A-10B TCGA-C8-A27A-10B-01D-A166-01 cf2fa8a9-e940-40ea-910a-c633d07f4abd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G12_802480.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-C8-A27A TCGA-C8-A27A-10B TCGA-C8-A27A-10B-01D-A166-01 cf2fa8a9-e940-40ea-910a-c633d07f4abd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G12_802480.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-C8-A27A TCGA-C8-A27A-10B TCGA-C8-A27A-10B-01D-A166-01 cf2fa8a9-e940-40ea-910a-c633d07f4abd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G12_802480.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-C8-A27A TCGA-C8-A27A-10B TCGA-C8-A27A-10B-01D-A166-01 cf2fa8a9-e940-40ea-910a-c633d07f4abd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G12_802480.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-C8-A27A TCGA-C8-A27A-10B TCGA-C8-A27A-10B-01D-A166-01 cf2fa8a9-e940-40ea-910a-c633d07f4abd SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G12_802480.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-C8-A27A TCGA-C8-A27A-10B TCGA-C8-A27A-10B-01D-A166-01 cf2fa8a9-e940-40ea-910a-c633d07f4abd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G12_802480.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-C8-A27A TCGA-C8-A27A-10B TCGA-C8-A27A-10B-01D-A167-09 b3bbaa37-c5ad-44d8-aab3-78472e776a66 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-C8-A27A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-C8-A27A TCGA-C8-A27A-10B TCGA-C8-A27A-10B-01W-A184-09 a2e593d8-e4d3-42af-a08d-70f51c1c7c62 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-C8-A27A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-C8-A27B TCGA-C8-A27B-01A TCGA-C8-A27B-01A-11D-A165-02 954ef323-3ab4-4473-a016-b1c012084267 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-C8-A27B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-C8-A27B TCGA-C8-A27B-01A TCGA-C8-A27B-01A-11D-A166-01 2d4cf2b5-75ed-40f3-b2e7-a32bde10b1f2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-C8-A27B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-C8-A27B TCGA-C8-A27B-01A TCGA-C8-A27B-01A-11D-A166-01 2d4cf2b5-75ed-40f3-b2e7-a32bde10b1f2 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D02_802348.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-C8-A27B TCGA-C8-A27B-01A TCGA-C8-A27B-01A-11D-A166-01 2d4cf2b5-75ed-40f3-b2e7-a32bde10b1f2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D02_802348.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-C8-A27B TCGA-C8-A27B-01A TCGA-C8-A27B-01A-11D-A167-09 11e43e41-54b8-4232-b078-5062288d3868 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-C8-A27B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-C8-A27B TCGA-C8-A27B-01A TCGA-C8-A27B-01A-11D-A16A-05 13bbe48f-75b4-4d5f-8dc8-d30ffdfb345b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-C8-A27B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-C8-A27B TCGA-C8-A27B-01A TCGA-C8-A27B-01A-11D-A16A-05 13bbe48f-75b4-4d5f-8dc8-d30ffdfb345b DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-2.TCGA-C8-A27B-01A-11D-A16A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0 142 07-NOV-11 04.58.21.556000000 PM TCGA-C8-A27B TCGA-C8-A27B-01A TCGA-C8-A27B-01A-11D-A16A-05 13bbe48f-75b4-4d5f-8dc8-d30ffdfb345b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-3.TCGA-C8-A27B-01A-11D-A16A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0 142 07-NOV-11 06.37.11.245000000 PM TCGA-C8-A27B TCGA-C8-A27B-01A TCGA-C8-A27B-01A-11R-A168-13 dc13de43-cea6-41c3-9978-9000f0854e2b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-C8-A27B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-C8-A27B TCGA-C8-A27B-01A TCGA-C8-A27B-01A-11R-A168-13 dc13de43-cea6-41c3-9978-9000f0854e2b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A27B-01A-11R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A27B TCGA-C8-A27B-01A TCGA-C8-A27B-01A-11R-A168-13 dc13de43-cea6-41c3-9978-9000f0854e2b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-C8-A27B-01A-11R-A168-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-C8-A27B TCGA-C8-A27B-01A TCGA-C8-A27B-01A-11R-A169-07 fb03a31f-6611-4343-816d-37a332147eac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-C8-A27B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-C8-A27B TCGA-C8-A27B-01A TCGA-C8-A27B-01A-11R-A169-07 fb03a31f-6611-4343-816d-37a332147eac RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_569498.TCGA-C8-A27B-01A-11R-A169-07.110921_UNC9-SN296_0243_BC010LABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-C8-A27B TCGA-C8-A27B-01A TCGA-C8-A27B-01A-11W-A184-09 a32db7da-72d8-4273-9b91-884df3d50e00 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-C8-A27B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-C8-A27B TCGA-C8-A27B-10A TCGA-C8-A27B-10A-01D-A165-02 83dcc28c-e728-40b3-8912-eedceceff082 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-C8-A27B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-C8-A27B TCGA-C8-A27B-10A TCGA-C8-A27B-10A-01D-A166-01 247f4e07-b36b-4e95-9076-649523ef551b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-C8-A27B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-C8-A27B TCGA-C8-A27B-10A TCGA-C8-A27B-10A-01D-A166-01 247f4e07-b36b-4e95-9076-649523ef551b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E12_802434.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-C8-A27B TCGA-C8-A27B-10A TCGA-C8-A27B-10A-01D-A166-01 247f4e07-b36b-4e95-9076-649523ef551b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E12_802434.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-C8-A27B TCGA-C8-A27B-10A TCGA-C8-A27B-10A-01D-A166-01 247f4e07-b36b-4e95-9076-649523ef551b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E12_802434.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-C8-A27B TCGA-C8-A27B-10A TCGA-C8-A27B-10A-01D-A166-01 247f4e07-b36b-4e95-9076-649523ef551b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E12_802434.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-C8-A27B TCGA-C8-A27B-10A TCGA-C8-A27B-10A-01D-A166-01 247f4e07-b36b-4e95-9076-649523ef551b SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E12_802434.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-C8-A27B TCGA-C8-A27B-10A TCGA-C8-A27B-10A-01D-A166-01 247f4e07-b36b-4e95-9076-649523ef551b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E12_802434.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-C8-A27B TCGA-C8-A27B-10A TCGA-C8-A27B-10A-01D-A167-09 922226ba-6244-4953-ad42-f4daa474c288 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-C8-A27B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-C8-A27B TCGA-C8-A27B-10A TCGA-C8-A27B-10A-01W-A184-09 0281e062-4b02-44ed-a3f8-d6db65ff8847 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-C8-A27B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-C8-A3M8 TCGA-C8-A3M8-01A TCGA-C8-A3M8-01A-11D-A20R-01 315dad75-6b4f-456f-be6e-77b9d066beb4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-C8-A3M8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-C8-A3M8 TCGA-C8-A3M8-01A TCGA-C8-A3M8-01A-11D-A20S-09 6ceb3f6f-e531-4f02-ac2b-67e0c1a58918 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-C8-A3M8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-C8-A3M8 TCGA-C8-A3M8-01A TCGA-C8-A3M8-01A-11D-A212-05 716a576d-9a92-424c-a5f2-e8bbff0d29b6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-C8-A3M8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-C8-A3M8 TCGA-C8-A3M8-01A TCGA-C8-A3M8-01A-11R-A213-07 a04ad65d-6d83-4e84-8bd8-3cab2a195642 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-C8-A3M8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-C8-A3M8 TCGA-C8-A3M8-01A TCGA-C8-A3M8-01A-11R-A214-13 2c7930e6-30dd-4822-8aff-c05462214ed1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-C8-A3M8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-C8-A3M8 TCGA-C8-A3M8-10A TCGA-C8-A3M8-10A-01D-A20R-01 be496c4c-a493-4f92-83d1-49d2b8cb036b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-C8-A3M8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-C8-A3M8 TCGA-C8-A3M8-10A TCGA-C8-A3M8-10A-01D-A20S-09 dd4257ed-800d-4c1d-99db-37991e1b12c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.202.2.0/nationwidechildrens.org_biospecimen.TCGA-C8-A3M8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.202.2.0 202 01-FEB-12 04.47.32.062000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11D-A10X-02 e15a8900-6511-4181-a88c-24cb4fd6a89e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A13Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11D-A10Y-09 8bb90325-028e-491a-bbaf-2cf4b3b87cd6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A13Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11D-A10Y-09 8bb90325-028e-491a-bbaf-2cf4b3b87cd6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11D-A111-01 7d1b722a-15e9-4ba8-846c-94fb949345ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A13Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11D-A111-01 7d1b722a-15e9-4ba8-846c-94fb949345ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F12_735262.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11D-A111-01 7d1b722a-15e9-4ba8-846c-94fb949345ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F12_735262.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11D-A111-01 7d1b722a-15e9-4ba8-846c-94fb949345ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F12_735262.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11D-A111-01 7d1b722a-15e9-4ba8-846c-94fb949345ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F12_735262.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11D-A111-01 7d1b722a-15e9-4ba8-846c-94fb949345ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F12_735262.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11D-A111-01 7d1b722a-15e9-4ba8-846c-94fb949345ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F12_735262.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11D-A111-01 7d1b722a-15e9-4ba8-846c-94fb949345ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F12_735262.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11D-A111-01 7d1b722a-15e9-4ba8-846c-94fb949345ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F12_735262.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11D-A112-05 f24a6ec0-315e-406a-8cba-fc9fce3584f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A13Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11D-A112-05 f24a6ec0-315e-406a-8cba-fc9fce3584f8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-D8-A13Y-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11D-A112-05 f24a6ec0-315e-406a-8cba-fc9fce3584f8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-D8-A13Y-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11D-A112-05 f24a6ec0-315e-406a-8cba-fc9fce3584f8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-D8-A13Y-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11R-A114-13 788397fc-b08f-42c2-bb88-09dc835333f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A13Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11R-A114-13 788397fc-b08f-42c2-bb88-09dc835333f8 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A13Y-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11R-A114-13 788397fc-b08f-42c2-bb88-09dc835333f8 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A13Y-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11R-A115-07 9a92e20a-2a43-4917-981d-c93179770050 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A13Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11R-A115-07 9a92e20a-2a43-4917-981d-c93179770050 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012826_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11R-A115-07 9a92e20a-2a43-4917-981d-c93179770050 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012826_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11R-A115-07 9a92e20a-2a43-4917-981d-c93179770050 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012826_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11R-A115-07 9a92e20a-2a43-4917-981d-c93179770050 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421202.TCGA-D8-A13Y-01A-11R-A115-07.110527_UNC10-SN254_0225_BD0CVWABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11R-A115-07 9a92e20a-2a43-4917-981d-c93179770050 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421208.TCGA-D8-A13Y-01A-11R-A115-07.110527_UNC10-SN254_0225_BD0CVWABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11R-A115-07 9a92e20a-2a43-4917-981d-c93179770050 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421214.TCGA-D8-A13Y-01A-11R-A115-07.110527_UNC10-SN254_0225_BD0CVWABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-01A TCGA-D8-A13Y-01A-11W-A12T-09 b4983dc7-640c-4d29-b34a-c63f19ad43c3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A13Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-10A TCGA-D8-A13Y-10A-01D-A10Z-02 68846dd6-ac0e-4e43-9886-c68269f5dcb6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A13Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-10A TCGA-D8-A13Y-10A-01D-A110-09 527b325c-63e5-4f66-9caf-6081829fbc2a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A13Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-10A TCGA-D8-A13Y-10A-01D-A110-09 527b325c-63e5-4f66-9caf-6081829fbc2a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-10A TCGA-D8-A13Y-10A-01D-A113-01 dfaa1fee-6671-4ed4-93f3-7084bfa6076f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A13Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A13Y TCGA-D8-A13Y-10A TCGA-D8-A13Y-10A-01W-A12U-09 866e34a3-df6a-476a-8975-e1d5eb8f8f12 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A13Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11D-A10X-02 eeb9a0b2-c301-42d2-93e0-abaf9494c776 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A13Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11D-A10Y-09 c3722c97-80f5-4eea-bf50-5a214134bbcc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A13Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11D-A10Y-09 c3722c97-80f5-4eea-bf50-5a214134bbcc Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11D-A111-01 a0230b81-eee6-4c5f-b6de-cb9215dbda5b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A13Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11D-A111-01 a0230b81-eee6-4c5f-b6de-cb9215dbda5b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D05_735198.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11D-A111-01 a0230b81-eee6-4c5f-b6de-cb9215dbda5b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D05_735198.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11D-A111-01 a0230b81-eee6-4c5f-b6de-cb9215dbda5b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D05_735198.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11D-A111-01 a0230b81-eee6-4c5f-b6de-cb9215dbda5b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D05_735198.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11D-A111-01 a0230b81-eee6-4c5f-b6de-cb9215dbda5b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D05_735198.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11D-A111-01 a0230b81-eee6-4c5f-b6de-cb9215dbda5b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D05_735198.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11D-A111-01 a0230b81-eee6-4c5f-b6de-cb9215dbda5b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D05_735198.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11D-A111-01 a0230b81-eee6-4c5f-b6de-cb9215dbda5b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D05_735198.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11D-A112-05 6ba4fa25-3f55-4576-a9aa-fbc7f9ca0e37 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A13Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11D-A112-05 6ba4fa25-3f55-4576-a9aa-fbc7f9ca0e37 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-D8-A13Z-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11D-A112-05 6ba4fa25-3f55-4576-a9aa-fbc7f9ca0e37 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-D8-A13Z-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11D-A112-05 6ba4fa25-3f55-4576-a9aa-fbc7f9ca0e37 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-D8-A13Z-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11R-A114-13 f28c9caa-dd68-40cc-8017-840c7b2e5faf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A13Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11R-A114-13 f28c9caa-dd68-40cc-8017-840c7b2e5faf miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A13Z-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11R-A114-13 f28c9caa-dd68-40cc-8017-840c7b2e5faf miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A13Z-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11R-A115-07 624ac458-8ff1-441c-a8c5-aaf4a08a4b84 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A13Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11R-A115-07 624ac458-8ff1-441c-a8c5-aaf4a08a4b84 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012837_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11R-A115-07 624ac458-8ff1-441c-a8c5-aaf4a08a4b84 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012837_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11R-A115-07 624ac458-8ff1-441c-a8c5-aaf4a08a4b84 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012837_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11R-A115-07 624ac458-8ff1-441c-a8c5-aaf4a08a4b84 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_409450.TCGA-D8-A13Z-01A-11R-A115-07.110628_UNC10-SN254_0239_BD0CTRABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11R-A115-07 624ac458-8ff1-441c-a8c5-aaf4a08a4b84 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_409483.TCGA-D8-A13Z-01A-11R-A115-07.110628_UNC10-SN254_0239_BD0CTRABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11R-A115-07 624ac458-8ff1-441c-a8c5-aaf4a08a4b84 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_409504.TCGA-D8-A13Z-01A-11R-A115-07.110628_UNC10-SN254_0239_BD0CTRABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-01A TCGA-D8-A13Z-01A-11W-A12T-09 a2a07ef8-4b7f-46b8-a428-eb41ea6a76ca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A13Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-10A TCGA-D8-A13Z-10A-01D-A10Z-02 ca833cf8-8b2f-471d-aa5b-7f2ac460b065 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A13Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-10A TCGA-D8-A13Z-10A-01D-A110-09 9b582ef6-8120-4a7a-be49-2c6c0d11713c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A13Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-10A TCGA-D8-A13Z-10A-01D-A110-09 9b582ef6-8120-4a7a-be49-2c6c0d11713c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-10A TCGA-D8-A13Z-10A-01D-A113-01 8b82aae0-1ebe-4659-ae31-c680718f79f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A13Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-10A TCGA-D8-A13Z-10A-01D-A113-01 8b82aae0-1ebe-4659-ae31-c680718f79f6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F02_735248.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-D8-A13Z TCGA-D8-A13Z-10A TCGA-D8-A13Z-10A-01D-A113-01 8b82aae0-1ebe-4659-ae31-c680718f79f6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F02_735248.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-10A TCGA-D8-A13Z-10A-01D-A113-01 8b82aae0-1ebe-4659-ae31-c680718f79f6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F02_735248.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-10A TCGA-D8-A13Z-10A-01D-A113-01 8b82aae0-1ebe-4659-ae31-c680718f79f6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F02_735248.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-10A TCGA-D8-A13Z-10A-01D-A113-01 8b82aae0-1ebe-4659-ae31-c680718f79f6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F02_735248.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-10A TCGA-D8-A13Z-10A-01D-A113-01 8b82aae0-1ebe-4659-ae31-c680718f79f6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F02_735248.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-10A TCGA-D8-A13Z-10A-01D-A113-01 8b82aae0-1ebe-4659-ae31-c680718f79f6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F02_735248.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-10A TCGA-D8-A13Z-10A-01D-A113-01 8b82aae0-1ebe-4659-ae31-c680718f79f6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F02_735248.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-D8-A13Z TCGA-D8-A13Z-10A TCGA-D8-A13Z-10A-01W-A12U-09 19282696-ec74-44cf-83b1-4745872a5275 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A13Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A140 TCGA-D8-A140-01A TCGA-D8-A140-01A-11D-A10X-02 9373b33d-9264-49c5-89e5-d3e4933bc20a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A140.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A140 TCGA-D8-A140-01A TCGA-D8-A140-01A-11D-A10Y-09 795f051e-01c4-4b49-b179-bd18ba24433c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A140.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A140 TCGA-D8-A140-01A TCGA-D8-A140-01A-11D-A10Y-09 795f051e-01c4-4b49-b179-bd18ba24433c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-D8-A140 TCGA-D8-A140-01A TCGA-D8-A140-01A-11D-A111-01 3551b6ac-c340-4640-9bbf-fe1181e1c773 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A140.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A140 TCGA-D8-A140-01A TCGA-D8-A140-01A-11D-A112-05 53397b52-19cb-4218-8c77-015910248d40 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A140.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A140 TCGA-D8-A140-01A TCGA-D8-A140-01A-11D-A112-05 53397b52-19cb-4218-8c77-015910248d40 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-D8-A140-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-D8-A140 TCGA-D8-A140-01A TCGA-D8-A140-01A-11D-A112-05 53397b52-19cb-4218-8c77-015910248d40 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-D8-A140-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-D8-A140 TCGA-D8-A140-01A TCGA-D8-A140-01A-11D-A112-05 53397b52-19cb-4218-8c77-015910248d40 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-D8-A140-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-D8-A140 TCGA-D8-A140-01A TCGA-D8-A140-01A-11R-A114-13 d2ea9c8c-b011-4c6d-93e9-16859ab8ecb1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A140.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A140 TCGA-D8-A140-01A TCGA-D8-A140-01A-11R-A114-13 d2ea9c8c-b011-4c6d-93e9-16859ab8ecb1 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A140-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A140 TCGA-D8-A140-01A TCGA-D8-A140-01A-11R-A114-13 d2ea9c8c-b011-4c6d-93e9-16859ab8ecb1 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A140-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A140 TCGA-D8-A140-01A TCGA-D8-A140-01A-11R-A115-07 116f1b9d-8c0c-4b29-b9b2-06ea186f4480 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A140.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A140 TCGA-D8-A140-01A TCGA-D8-A140-01A-11R-A115-07 116f1b9d-8c0c-4b29-b9b2-06ea186f4480 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012749_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-D8-A140 TCGA-D8-A140-01A TCGA-D8-A140-01A-11R-A115-07 116f1b9d-8c0c-4b29-b9b2-06ea186f4480 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012749_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-D8-A140 TCGA-D8-A140-01A TCGA-D8-A140-01A-11R-A115-07 116f1b9d-8c0c-4b29-b9b2-06ea186f4480 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012749_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-D8-A140 TCGA-D8-A140-01A TCGA-D8-A140-01A-11R-A115-07 116f1b9d-8c0c-4b29-b9b2-06ea186f4480 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420466.TCGA-D8-A140-01A-11R-A115-07.110608_UNC11-SN627_0103_BD0CVVABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A140 TCGA-D8-A140-01A TCGA-D8-A140-01A-11R-A115-07 116f1b9d-8c0c-4b29-b9b2-06ea186f4480 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420473.TCGA-D8-A140-01A-11R-A115-07.110608_UNC11-SN627_0103_BD0CVVABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A140 TCGA-D8-A140-01A TCGA-D8-A140-01A-11R-A115-07 116f1b9d-8c0c-4b29-b9b2-06ea186f4480 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420501.TCGA-D8-A140-01A-11R-A115-07.110608_UNC11-SN627_0103_BD0CVVABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A140 TCGA-D8-A140-01A TCGA-D8-A140-01A-11W-A12T-09 6d933f11-829e-414c-91cb-615508e91e78 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A140.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A140 TCGA-D8-A140-10A TCGA-D8-A140-10A-01D-A10Z-02 4466eaa8-dfb2-4395-a806-bc1032221697 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A140.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A140 TCGA-D8-A140-10A TCGA-D8-A140-10A-01D-A110-09 3294b1ce-7e97-4973-86d3-71866f5a16c7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A140.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A140 TCGA-D8-A140-10A TCGA-D8-A140-10A-01D-A110-09 3294b1ce-7e97-4973-86d3-71866f5a16c7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-D8-A140 TCGA-D8-A140-10A TCGA-D8-A140-10A-01D-A113-01 47d20168-28d0-40e5-ae4d-a20b636bad37 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A140.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A140 TCGA-D8-A140-10A TCGA-D8-A140-10A-01D-A113-01 47d20168-28d0-40e5-ae4d-a20b636bad37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B10_735308.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-D8-A140 TCGA-D8-A140-10A TCGA-D8-A140-10A-01D-A113-01 47d20168-28d0-40e5-ae4d-a20b636bad37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B10_735308.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A140 TCGA-D8-A140-10A TCGA-D8-A140-10A-01D-A113-01 47d20168-28d0-40e5-ae4d-a20b636bad37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B10_735308.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A140 TCGA-D8-A140-10A TCGA-D8-A140-10A-01D-A113-01 47d20168-28d0-40e5-ae4d-a20b636bad37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B10_735308.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A140 TCGA-D8-A140-10A TCGA-D8-A140-10A-01D-A113-01 47d20168-28d0-40e5-ae4d-a20b636bad37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B10_735308.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A140 TCGA-D8-A140-10A TCGA-D8-A140-10A-01D-A113-01 47d20168-28d0-40e5-ae4d-a20b636bad37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B10_735308.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A140 TCGA-D8-A140-10A TCGA-D8-A140-10A-01D-A113-01 47d20168-28d0-40e5-ae4d-a20b636bad37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B10_735308.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A140 TCGA-D8-A140-10A TCGA-D8-A140-10A-01D-A113-01 47d20168-28d0-40e5-ae4d-a20b636bad37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B10_735308.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-D8-A140 TCGA-D8-A140-10A TCGA-D8-A140-10A-01W-A12U-09 72d52990-9247-4a19-af77-6f12826984a0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A140.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11D-A10X-02 2b3d35a7-1759-4b85-918e-35392ec369de Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A141.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11D-A10Y-09 807791d8-b6c0-4722-bf5c-d5fa30baffc6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A141.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11D-A10Y-09 807791d8-b6c0-4722-bf5c-d5fa30baffc6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11D-A111-01 b96324a1-55fb-4b3a-b813-0305e6bd31c2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A141.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11D-A111-01 b96324a1-55fb-4b3a-b813-0305e6bd31c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D09_735346.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11D-A111-01 b96324a1-55fb-4b3a-b813-0305e6bd31c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D09_735346.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11D-A111-01 b96324a1-55fb-4b3a-b813-0305e6bd31c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D09_735346.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11D-A111-01 b96324a1-55fb-4b3a-b813-0305e6bd31c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D09_735346.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11D-A111-01 b96324a1-55fb-4b3a-b813-0305e6bd31c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D09_735346.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11D-A111-01 b96324a1-55fb-4b3a-b813-0305e6bd31c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D09_735346.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11D-A111-01 b96324a1-55fb-4b3a-b813-0305e6bd31c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D09_735346.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11D-A111-01 b96324a1-55fb-4b3a-b813-0305e6bd31c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D09_735346.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11D-A112-05 d6d3abda-aee0-44e6-b546-0172cfd43900 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A141.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11D-A112-05 d6d3abda-aee0-44e6-b546-0172cfd43900 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-D8-A141-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11D-A112-05 d6d3abda-aee0-44e6-b546-0172cfd43900 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-D8-A141-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11D-A112-05 d6d3abda-aee0-44e6-b546-0172cfd43900 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-D8-A141-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11R-A114-13 7ebf4fb8-3e67-4090-b7df-6f4574d1ba35 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A141.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11R-A114-13 7ebf4fb8-3e67-4090-b7df-6f4574d1ba35 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A141-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11R-A114-13 7ebf4fb8-3e67-4090-b7df-6f4574d1ba35 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A141-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11R-A115-07 cb6c668a-ff24-4ebe-99f7-0c24fcf17c32 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A141.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11R-A115-07 cb6c668a-ff24-4ebe-99f7-0c24fcf17c32 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012766_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11R-A115-07 cb6c668a-ff24-4ebe-99f7-0c24fcf17c32 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012766_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11R-A115-07 cb6c668a-ff24-4ebe-99f7-0c24fcf17c32 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012766_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11R-A115-07 cb6c668a-ff24-4ebe-99f7-0c24fcf17c32 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_410952.TCGA-D8-A141-01A-11R-A115-07.110607_UNC14-SN744_0124_AD0CVCABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11R-A115-07 cb6c668a-ff24-4ebe-99f7-0c24fcf17c32 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_410981.TCGA-D8-A141-01A-11R-A115-07.110607_UNC14-SN744_0124_AD0CVCABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11R-A115-07 cb6c668a-ff24-4ebe-99f7-0c24fcf17c32 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_411039.TCGA-D8-A141-01A-11R-A115-07.110607_UNC14-SN744_0124_AD0CVCABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A141 TCGA-D8-A141-01A TCGA-D8-A141-01A-11W-A12T-09 2008e28c-7d96-429f-95f7-8e3a276d2d82 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A141.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A141 TCGA-D8-A141-10A TCGA-D8-A141-10A-01D-A10Z-02 01ba4ece-7a7c-4043-ae19-cead60bd41e2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A141.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A141 TCGA-D8-A141-10A TCGA-D8-A141-10A-01D-A110-09 8bd52c2f-131d-40cc-8c24-f8021128cb93 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A141.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A141 TCGA-D8-A141-10A TCGA-D8-A141-10A-01D-A110-09 8bd52c2f-131d-40cc-8c24-f8021128cb93 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-D8-A141 TCGA-D8-A141-10A TCGA-D8-A141-10A-01D-A113-01 a7bfe6dd-17b9-411e-ba51-bb1d45e1aabc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A141.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A141 TCGA-D8-A141-10A TCGA-D8-A141-10A-01W-A12U-09 2610502a-f709-438d-a9a8-537d4446fede Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A141.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11D-A10X-02 a754bc82-531b-4d2a-82bf-41bcd53125af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A142.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11D-A10Y-09 86c9c056-e9c7-4653-a0b5-29f2b140534b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A142.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11D-A10Y-09 86c9c056-e9c7-4653-a0b5-29f2b140534b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11D-A111-01 336577b1-b012-4346-936b-0502d0f8a597 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A142.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11D-A111-01 336577b1-b012-4346-936b-0502d0f8a597 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E01_735354.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11D-A111-01 336577b1-b012-4346-936b-0502d0f8a597 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E01_735354.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11D-A111-01 336577b1-b012-4346-936b-0502d0f8a597 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E01_735354.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11D-A111-01 336577b1-b012-4346-936b-0502d0f8a597 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E01_735354.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11D-A111-01 336577b1-b012-4346-936b-0502d0f8a597 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E01_735354.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11D-A111-01 336577b1-b012-4346-936b-0502d0f8a597 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E01_735354.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11D-A111-01 336577b1-b012-4346-936b-0502d0f8a597 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E01_735354.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11D-A111-01 336577b1-b012-4346-936b-0502d0f8a597 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E01_735354.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11D-A112-05 95c19d3e-4915-4d16-8e86-54c163077153 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A142.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11D-A112-05 95c19d3e-4915-4d16-8e86-54c163077153 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-D8-A142-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11D-A112-05 95c19d3e-4915-4d16-8e86-54c163077153 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-D8-A142-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11D-A112-05 95c19d3e-4915-4d16-8e86-54c163077153 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-D8-A142-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11R-A114-13 706dbad6-884c-4302-9acf-a36d3e237e01 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A142.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11R-A114-13 706dbad6-884c-4302-9acf-a36d3e237e01 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A142-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11R-A114-13 706dbad6-884c-4302-9acf-a36d3e237e01 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A142-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11R-A115-07 9f440cd6-d55f-4cb6-a433-637ef1f9d38f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A142.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11R-A115-07 9f440cd6-d55f-4cb6-a433-637ef1f9d38f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012778_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11R-A115-07 9f440cd6-d55f-4cb6-a433-637ef1f9d38f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012778_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11R-A115-07 9f440cd6-d55f-4cb6-a433-637ef1f9d38f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012778_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11R-A115-07 9f440cd6-d55f-4cb6-a433-637ef1f9d38f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_411010.TCGA-D8-A142-01A-11R-A115-07.110607_UNC14-SN744_0124_AD0CVCABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11R-A115-07 9f440cd6-d55f-4cb6-a433-637ef1f9d38f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_411023.TCGA-D8-A142-01A-11R-A115-07.110607_UNC14-SN744_0124_AD0CVCABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11R-A115-07 9f440cd6-d55f-4cb6-a433-637ef1f9d38f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_411145.TCGA-D8-A142-01A-11R-A115-07.110607_UNC14-SN744_0124_AD0CVCABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A142 TCGA-D8-A142-01A TCGA-D8-A142-01A-11W-A12T-09 3c6fe5ff-9d5d-4107-8b74-ca91c1a9816a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A142.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A142 TCGA-D8-A142-10A TCGA-D8-A142-10A-01D-A10Z-02 b351be05-2427-4a3f-b400-8af3d2522537 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A142.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A142 TCGA-D8-A142-10A TCGA-D8-A142-10A-01D-A110-09 45e9f8c4-5eac-44fe-b1bd-4e9285524e60 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A142.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A142 TCGA-D8-A142-10A TCGA-D8-A142-10A-01D-A110-09 45e9f8c4-5eac-44fe-b1bd-4e9285524e60 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-D8-A142 TCGA-D8-A142-10A TCGA-D8-A142-10A-01D-A113-01 7aec7872-b33e-4737-bf65-011b0d0f719c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A142.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A142 TCGA-D8-A142-10A TCGA-D8-A142-10A-01D-A113-01 7aec7872-b33e-4737-bf65-011b0d0f719c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C02_735200.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-D8-A142 TCGA-D8-A142-10A TCGA-D8-A142-10A-01D-A113-01 7aec7872-b33e-4737-bf65-011b0d0f719c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C02_735200.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A142 TCGA-D8-A142-10A TCGA-D8-A142-10A-01D-A113-01 7aec7872-b33e-4737-bf65-011b0d0f719c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C02_735200.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A142 TCGA-D8-A142-10A TCGA-D8-A142-10A-01D-A113-01 7aec7872-b33e-4737-bf65-011b0d0f719c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C02_735200.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A142 TCGA-D8-A142-10A TCGA-D8-A142-10A-01D-A113-01 7aec7872-b33e-4737-bf65-011b0d0f719c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C02_735200.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A142 TCGA-D8-A142-10A TCGA-D8-A142-10A-01D-A113-01 7aec7872-b33e-4737-bf65-011b0d0f719c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C02_735200.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A142 TCGA-D8-A142-10A TCGA-D8-A142-10A-01D-A113-01 7aec7872-b33e-4737-bf65-011b0d0f719c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C02_735200.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A142 TCGA-D8-A142-10A TCGA-D8-A142-10A-01D-A113-01 7aec7872-b33e-4737-bf65-011b0d0f719c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C02_735200.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-D8-A142 TCGA-D8-A142-10A TCGA-D8-A142-10A-01W-A12U-09 3f8301c1-fc4f-49bd-9e9f-c08cbeff5f0d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A142.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A143 TCGA-D8-A143-01A TCGA-D8-A143-01A-11D-A10X-02 9cf1366c-d52c-48ef-a074-a8a9d6edfe2a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A143.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A143 TCGA-D8-A143-01A TCGA-D8-A143-01A-11D-A10Y-09 db1763d1-fcae-4a01-a0cb-3019e292aa10 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A143.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A143 TCGA-D8-A143-01A TCGA-D8-A143-01A-11D-A10Y-09 db1763d1-fcae-4a01-a0cb-3019e292aa10 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-D8-A143 TCGA-D8-A143-01A TCGA-D8-A143-01A-11D-A111-01 e49bd6ce-bbab-4c77-a49d-6a85bf2e1f14 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A143.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A143 TCGA-D8-A143-01A TCGA-D8-A143-01A-11D-A111-01 e49bd6ce-bbab-4c77-a49d-6a85bf2e1f14 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E05_735324.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-D8-A143 TCGA-D8-A143-01A TCGA-D8-A143-01A-11D-A111-01 e49bd6ce-bbab-4c77-a49d-6a85bf2e1f14 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E05_735324.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A143 TCGA-D8-A143-01A TCGA-D8-A143-01A-11D-A111-01 e49bd6ce-bbab-4c77-a49d-6a85bf2e1f14 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E05_735324.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A143 TCGA-D8-A143-01A TCGA-D8-A143-01A-11D-A111-01 e49bd6ce-bbab-4c77-a49d-6a85bf2e1f14 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E05_735324.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A143 TCGA-D8-A143-01A TCGA-D8-A143-01A-11D-A111-01 e49bd6ce-bbab-4c77-a49d-6a85bf2e1f14 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E05_735324.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A143 TCGA-D8-A143-01A TCGA-D8-A143-01A-11D-A111-01 e49bd6ce-bbab-4c77-a49d-6a85bf2e1f14 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E05_735324.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A143 TCGA-D8-A143-01A TCGA-D8-A143-01A-11D-A111-01 e49bd6ce-bbab-4c77-a49d-6a85bf2e1f14 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E05_735324.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A143 TCGA-D8-A143-01A TCGA-D8-A143-01A-11D-A111-01 e49bd6ce-bbab-4c77-a49d-6a85bf2e1f14 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E05_735324.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-D8-A143 TCGA-D8-A143-01A TCGA-D8-A143-01A-11D-A112-05 23b5616e-8f4b-4720-a769-d63302bc1e6d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A143.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A143 TCGA-D8-A143-01A TCGA-D8-A143-01A-11D-A112-05 23b5616e-8f4b-4720-a769-d63302bc1e6d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-D8-A143-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-D8-A143 TCGA-D8-A143-01A TCGA-D8-A143-01A-11D-A112-05 23b5616e-8f4b-4720-a769-d63302bc1e6d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-D8-A143-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-D8-A143 TCGA-D8-A143-01A TCGA-D8-A143-01A-11D-A112-05 23b5616e-8f4b-4720-a769-d63302bc1e6d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-D8-A143-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-D8-A143 TCGA-D8-A143-01A TCGA-D8-A143-01A-11R-A114-13 3d915ef2-3f94-40a4-b024-2bcb905114a9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A143.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A143 TCGA-D8-A143-01A TCGA-D8-A143-01A-11R-A115-07 4bf5f56d-448a-426a-8edc-f1bdbf6a8d55 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A143.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A143 TCGA-D8-A143-01A TCGA-D8-A143-01A-11R-A115-07 4bf5f56d-448a-426a-8edc-f1bdbf6a8d55 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012792_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-D8-A143 TCGA-D8-A143-01A TCGA-D8-A143-01A-11R-A115-07 4bf5f56d-448a-426a-8edc-f1bdbf6a8d55 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012792_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-D8-A143 TCGA-D8-A143-01A TCGA-D8-A143-01A-11R-A115-07 4bf5f56d-448a-426a-8edc-f1bdbf6a8d55 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012792_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-D8-A143 TCGA-D8-A143-01A TCGA-D8-A143-01A-11R-A115-07 4bf5f56d-448a-426a-8edc-f1bdbf6a8d55 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420607.TCGA-D8-A143-01A-11R-A115-07.110608_SN254_0231_BD0CT2ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A143 TCGA-D8-A143-01A TCGA-D8-A143-01A-11R-A115-07 4bf5f56d-448a-426a-8edc-f1bdbf6a8d55 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420609.TCGA-D8-A143-01A-11R-A115-07.110608_SN254_0231_BD0CT2ABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A143 TCGA-D8-A143-01A TCGA-D8-A143-01A-11R-A115-07 4bf5f56d-448a-426a-8edc-f1bdbf6a8d55 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420690.TCGA-D8-A143-01A-11R-A115-07.110608_SN254_0231_BD0CT2ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A143 TCGA-D8-A143-01A TCGA-D8-A143-01A-11W-A12T-09 4062e676-d7d3-4a39-a9af-3bf5a53cd44f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A143.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A143 TCGA-D8-A143-10A TCGA-D8-A143-10A-01D-A10Z-02 ec77fa49-7ead-4361-8535-aedf0347c0c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A143.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A143 TCGA-D8-A143-10A TCGA-D8-A143-10A-01D-A110-09 a8bb9607-a942-4e01-a4e3-faeeff223d0d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A143.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A143 TCGA-D8-A143-10A TCGA-D8-A143-10A-01D-A110-09 a8bb9607-a942-4e01-a4e3-faeeff223d0d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-D8-A143 TCGA-D8-A143-10A TCGA-D8-A143-10A-01D-A113-01 a932959b-407f-4062-8e7e-9d82bc8da663 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A143.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A143 TCGA-D8-A143-10A TCGA-D8-A143-10A-01D-A113-01 a932959b-407f-4062-8e7e-9d82bc8da663 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C05_735300.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-D8-A143 TCGA-D8-A143-10A TCGA-D8-A143-10A-01D-A113-01 a932959b-407f-4062-8e7e-9d82bc8da663 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C05_735300.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A143 TCGA-D8-A143-10A TCGA-D8-A143-10A-01D-A113-01 a932959b-407f-4062-8e7e-9d82bc8da663 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C05_735300.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A143 TCGA-D8-A143-10A TCGA-D8-A143-10A-01D-A113-01 a932959b-407f-4062-8e7e-9d82bc8da663 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C05_735300.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A143 TCGA-D8-A143-10A TCGA-D8-A143-10A-01D-A113-01 a932959b-407f-4062-8e7e-9d82bc8da663 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C05_735300.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A143 TCGA-D8-A143-10A TCGA-D8-A143-10A-01D-A113-01 a932959b-407f-4062-8e7e-9d82bc8da663 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C05_735300.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A143 TCGA-D8-A143-10A TCGA-D8-A143-10A-01D-A113-01 a932959b-407f-4062-8e7e-9d82bc8da663 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C05_735300.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A143 TCGA-D8-A143-10A TCGA-D8-A143-10A-01D-A113-01 a932959b-407f-4062-8e7e-9d82bc8da663 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C05_735300.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-D8-A143 TCGA-D8-A143-10A TCGA-D8-A143-10A-01W-A12U-09 3d917ccf-7618-47d5-96f9-ca22b35717ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A143.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11D-A10X-02 e9254512-97a7-49be-9144-d2c858ff748c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A145.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11D-A10Y-09 af6ca646-499a-4e0a-a194-cacf72e5810b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A145.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11D-A10Y-09 af6ca646-499a-4e0a-a194-cacf72e5810b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11D-A111-01 6afb99b2-188d-4de2-9d42-821be341609d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A145.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11D-A111-01 6afb99b2-188d-4de2-9d42-821be341609d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E06_735382.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11D-A111-01 6afb99b2-188d-4de2-9d42-821be341609d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E06_735382.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11D-A111-01 6afb99b2-188d-4de2-9d42-821be341609d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E06_735382.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11D-A111-01 6afb99b2-188d-4de2-9d42-821be341609d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E06_735382.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11D-A111-01 6afb99b2-188d-4de2-9d42-821be341609d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E06_735382.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11D-A111-01 6afb99b2-188d-4de2-9d42-821be341609d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E06_735382.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11D-A111-01 6afb99b2-188d-4de2-9d42-821be341609d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E06_735382.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11D-A111-01 6afb99b2-188d-4de2-9d42-821be341609d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E06_735382.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11D-A112-05 9d32a4c4-41d0-4d37-b0e8-412c4eba1e3a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A145.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11D-A112-05 9d32a4c4-41d0-4d37-b0e8-412c4eba1e3a DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-D8-A145-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11D-A112-05 9d32a4c4-41d0-4d37-b0e8-412c4eba1e3a DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-D8-A145-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11D-A112-05 9d32a4c4-41d0-4d37-b0e8-412c4eba1e3a DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-D8-A145-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11R-A114-13 8b90e7a9-259b-46d4-8430-0a66cfbab0f5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A145.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11R-A114-13 8b90e7a9-259b-46d4-8430-0a66cfbab0f5 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A145-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11R-A114-13 8b90e7a9-259b-46d4-8430-0a66cfbab0f5 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A145-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11R-A115-07 6223244a-ed38-46b5-8e65-cc8e4926c809 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A145.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11R-A115-07 6223244a-ed38-46b5-8e65-cc8e4926c809 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012804_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11R-A115-07 6223244a-ed38-46b5-8e65-cc8e4926c809 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012804_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11R-A115-07 6223244a-ed38-46b5-8e65-cc8e4926c809 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012804_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11R-A115-07 6223244a-ed38-46b5-8e65-cc8e4926c809 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420615.TCGA-D8-A145-01A-11R-A115-07.110608_SN254_0231_BD0CT2ABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11R-A115-07 6223244a-ed38-46b5-8e65-cc8e4926c809 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420617.TCGA-D8-A145-01A-11R-A115-07.110608_SN254_0231_BD0CT2ABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11R-A115-07 6223244a-ed38-46b5-8e65-cc8e4926c809 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420741.TCGA-D8-A145-01A-11R-A115-07.110608_SN254_0231_BD0CT2ABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A145 TCGA-D8-A145-01A TCGA-D8-A145-01A-11W-A12T-09 607c490d-ac72-4a94-a25f-32f445a8da96 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A145.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A145 TCGA-D8-A145-10A TCGA-D8-A145-10A-01D-A10Z-02 f64e4eb5-f33d-417f-8909-294aa068d24c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A145.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A145 TCGA-D8-A145-10A TCGA-D8-A145-10A-01D-A110-09 dd892454-5f5c-492b-88ae-eb5a4c3bdb56 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A145.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A145 TCGA-D8-A145-10A TCGA-D8-A145-10A-01D-A110-09 dd892454-5f5c-492b-88ae-eb5a4c3bdb56 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-D8-A145 TCGA-D8-A145-10A TCGA-D8-A145-10A-01D-A113-01 56a12e7e-bc33-483d-9c09-7bd170093abe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A145.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A145 TCGA-D8-A145-10A TCGA-D8-A145-10A-01D-A113-01 56a12e7e-bc33-483d-9c09-7bd170093abe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F08_735210.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-D8-A145 TCGA-D8-A145-10A TCGA-D8-A145-10A-01D-A113-01 56a12e7e-bc33-483d-9c09-7bd170093abe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F08_735210.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A145 TCGA-D8-A145-10A TCGA-D8-A145-10A-01D-A113-01 56a12e7e-bc33-483d-9c09-7bd170093abe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F08_735210.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A145 TCGA-D8-A145-10A TCGA-D8-A145-10A-01D-A113-01 56a12e7e-bc33-483d-9c09-7bd170093abe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F08_735210.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A145 TCGA-D8-A145-10A TCGA-D8-A145-10A-01D-A113-01 56a12e7e-bc33-483d-9c09-7bd170093abe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F08_735210.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A145 TCGA-D8-A145-10A TCGA-D8-A145-10A-01D-A113-01 56a12e7e-bc33-483d-9c09-7bd170093abe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F08_735210.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A145 TCGA-D8-A145-10A TCGA-D8-A145-10A-01D-A113-01 56a12e7e-bc33-483d-9c09-7bd170093abe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F08_735210.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A145 TCGA-D8-A145-10A TCGA-D8-A145-10A-01D-A113-01 56a12e7e-bc33-483d-9c09-7bd170093abe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F08_735210.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-D8-A145 TCGA-D8-A145-10A TCGA-D8-A145-10A-01W-A12U-09 62ed4b19-b913-4939-94ef-6890a436b92e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A145.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A146 TCGA-D8-A146-01A TCGA-D8-A146-01A-31D-A10X-02 bef6a5b8-8ed0-4b53-98bf-eea18b666cc5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A146.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A146 TCGA-D8-A146-01A TCGA-D8-A146-01A-31D-A10Y-09 9a7548dc-fc79-4ad4-a324-0e9f63c91a20 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A146.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A146 TCGA-D8-A146-01A TCGA-D8-A146-01A-31D-A111-01 136bb2dd-32dc-434d-978c-310c93fa1dd8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A146.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A146 TCGA-D8-A146-01A TCGA-D8-A146-01A-31D-A111-01 136bb2dd-32dc-434d-978c-310c93fa1dd8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D01_735272.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-D8-A146 TCGA-D8-A146-01A TCGA-D8-A146-01A-31D-A111-01 136bb2dd-32dc-434d-978c-310c93fa1dd8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D01_735272.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A146 TCGA-D8-A146-01A TCGA-D8-A146-01A-31D-A111-01 136bb2dd-32dc-434d-978c-310c93fa1dd8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D01_735272.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A146 TCGA-D8-A146-01A TCGA-D8-A146-01A-31D-A111-01 136bb2dd-32dc-434d-978c-310c93fa1dd8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D01_735272.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A146 TCGA-D8-A146-01A TCGA-D8-A146-01A-31D-A111-01 136bb2dd-32dc-434d-978c-310c93fa1dd8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D01_735272.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A146 TCGA-D8-A146-01A TCGA-D8-A146-01A-31D-A111-01 136bb2dd-32dc-434d-978c-310c93fa1dd8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D01_735272.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A146 TCGA-D8-A146-01A TCGA-D8-A146-01A-31D-A111-01 136bb2dd-32dc-434d-978c-310c93fa1dd8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D01_735272.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A146 TCGA-D8-A146-01A TCGA-D8-A146-01A-31D-A111-01 136bb2dd-32dc-434d-978c-310c93fa1dd8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D01_735272.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-D8-A146 TCGA-D8-A146-01A TCGA-D8-A146-01A-31D-A112-05 f3e2f233-76b7-404c-bf0c-e1103ab119d8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A146.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A146 TCGA-D8-A146-01A TCGA-D8-A146-01A-31D-A112-05 f3e2f233-76b7-404c-bf0c-e1103ab119d8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-D8-A146-01A-31D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-D8-A146 TCGA-D8-A146-01A TCGA-D8-A146-01A-31D-A112-05 f3e2f233-76b7-404c-bf0c-e1103ab119d8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-D8-A146-01A-31D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-D8-A146 TCGA-D8-A146-01A TCGA-D8-A146-01A-31D-A112-05 f3e2f233-76b7-404c-bf0c-e1103ab119d8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-D8-A146-01A-31D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-D8-A146 TCGA-D8-A146-01A TCGA-D8-A146-01A-31R-A114-13 aa00ebe5-c325-46c8-9cb9-4e4673d1418a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A146.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A146 TCGA-D8-A146-01A TCGA-D8-A146-01A-31R-A114-13 aa00ebe5-c325-46c8-9cb9-4e4673d1418a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A146-01A-31R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A146 TCGA-D8-A146-01A TCGA-D8-A146-01A-31R-A114-13 aa00ebe5-c325-46c8-9cb9-4e4673d1418a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A146-01A-31R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A146 TCGA-D8-A146-01A TCGA-D8-A146-01A-31R-A115-07 69f535c7-8f70-4efc-98bc-7f99924d7db1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A146.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A146 TCGA-D8-A146-01A TCGA-D8-A146-01A-31R-A115-07 69f535c7-8f70-4efc-98bc-7f99924d7db1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012816_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-D8-A146 TCGA-D8-A146-01A TCGA-D8-A146-01A-31R-A115-07 69f535c7-8f70-4efc-98bc-7f99924d7db1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012816_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-D8-A146 TCGA-D8-A146-01A TCGA-D8-A146-01A-31R-A115-07 69f535c7-8f70-4efc-98bc-7f99924d7db1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012816_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-D8-A146 TCGA-D8-A146-01A TCGA-D8-A146-01A-31R-A115-07 69f535c7-8f70-4efc-98bc-7f99924d7db1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421393.TCGA-D8-A146-01A-31R-A115-07.110527_UNC10-SN254_0225_BD0CVWABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A146 TCGA-D8-A146-01A TCGA-D8-A146-01A-31R-A115-07 69f535c7-8f70-4efc-98bc-7f99924d7db1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421412.TCGA-D8-A146-01A-31R-A115-07.110527_UNC10-SN254_0225_BD0CVWABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A146 TCGA-D8-A146-01A TCGA-D8-A146-01A-31R-A115-07 69f535c7-8f70-4efc-98bc-7f99924d7db1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421424.TCGA-D8-A146-01A-31R-A115-07.110527_UNC10-SN254_0225_BD0CVWABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A146 TCGA-D8-A146-01A TCGA-D8-A146-01A-31W-A12T-09 692bd69a-e4c1-4ae7-8bdf-ed775ea6fe93 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A146.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A146 TCGA-D8-A146-10A TCGA-D8-A146-10A-01D-A10Z-02 e619c3e5-4e33-451a-965e-5c24642dfb9d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A146.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A146 TCGA-D8-A146-10A TCGA-D8-A146-10A-01D-A110-09 6d63e128-669b-4ac6-b2d3-10f6d7cf82d1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A146.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A146 TCGA-D8-A146-10A TCGA-D8-A146-10A-01D-A113-01 5b15f399-3d75-48b6-acc4-c59462d44dda Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A146.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A146 TCGA-D8-A146-10A TCGA-D8-A146-10A-01D-A113-01 5b15f399-3d75-48b6-acc4-c59462d44dda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H08_735314.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-D8-A146 TCGA-D8-A146-10A TCGA-D8-A146-10A-01D-A113-01 5b15f399-3d75-48b6-acc4-c59462d44dda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H08_735314.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A146 TCGA-D8-A146-10A TCGA-D8-A146-10A-01D-A113-01 5b15f399-3d75-48b6-acc4-c59462d44dda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H08_735314.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A146 TCGA-D8-A146-10A TCGA-D8-A146-10A-01D-A113-01 5b15f399-3d75-48b6-acc4-c59462d44dda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H08_735314.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A146 TCGA-D8-A146-10A TCGA-D8-A146-10A-01D-A113-01 5b15f399-3d75-48b6-acc4-c59462d44dda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H08_735314.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A146 TCGA-D8-A146-10A TCGA-D8-A146-10A-01D-A113-01 5b15f399-3d75-48b6-acc4-c59462d44dda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H08_735314.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A146 TCGA-D8-A146-10A TCGA-D8-A146-10A-01D-A113-01 5b15f399-3d75-48b6-acc4-c59462d44dda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H08_735314.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A146 TCGA-D8-A146-10A TCGA-D8-A146-10A-01D-A113-01 5b15f399-3d75-48b6-acc4-c59462d44dda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H08_735314.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-D8-A146 TCGA-D8-A146-10A TCGA-D8-A146-10A-01W-A12U-09 3e32317e-db23-414e-a434-5bf3c58b70ac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A146.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11D-A10X-02 4bd7d929-5660-4d9b-a647-fd9f2c9f4cba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A147.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11D-A10Y-09 1f292323-cafc-4e45-bb4e-f5428e1a3276 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A147.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11D-A10Y-09 1f292323-cafc-4e45-bb4e-f5428e1a3276 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11D-A111-01 92830f47-3f32-4b74-bef4-4536963be38f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A147.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11D-A111-01 92830f47-3f32-4b74-bef4-4536963be38f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G01_735234.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11D-A111-01 92830f47-3f32-4b74-bef4-4536963be38f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G01_735234.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11D-A111-01 92830f47-3f32-4b74-bef4-4536963be38f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G01_735234.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11D-A111-01 92830f47-3f32-4b74-bef4-4536963be38f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G01_735234.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11D-A111-01 92830f47-3f32-4b74-bef4-4536963be38f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G01_735234.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11D-A111-01 92830f47-3f32-4b74-bef4-4536963be38f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G01_735234.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11D-A111-01 92830f47-3f32-4b74-bef4-4536963be38f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G01_735234.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11D-A111-01 92830f47-3f32-4b74-bef4-4536963be38f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G01_735234.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11D-A112-05 c6d60a32-9401-46c0-b79c-2b4e82997b13 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A147.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11D-A112-05 c6d60a32-9401-46c0-b79c-2b4e82997b13 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-D8-A147-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11D-A112-05 c6d60a32-9401-46c0-b79c-2b4e82997b13 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-D8-A147-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11D-A112-05 c6d60a32-9401-46c0-b79c-2b4e82997b13 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-D8-A147-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11R-A114-13 3fb09cef-b697-4ea4-a0dc-5442863e8d75 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A147.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11R-A114-13 3fb09cef-b697-4ea4-a0dc-5442863e8d75 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A147-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11R-A114-13 3fb09cef-b697-4ea4-a0dc-5442863e8d75 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A147-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11R-A115-07 4d28bcbc-dbdd-46f8-9329-49f359480a97 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A147.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11R-A115-07 4d28bcbc-dbdd-46f8-9329-49f359480a97 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012827_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11R-A115-07 4d28bcbc-dbdd-46f8-9329-49f359480a97 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012827_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11R-A115-07 4d28bcbc-dbdd-46f8-9329-49f359480a97 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012827_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11R-A115-07 4d28bcbc-dbdd-46f8-9329-49f359480a97 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421397.TCGA-D8-A147-01A-11R-A115-07.110527_UNC10-SN254_0225_BD0CVWABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11R-A115-07 4d28bcbc-dbdd-46f8-9329-49f359480a97 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421398.TCGA-D8-A147-01A-11R-A115-07.110527_UNC10-SN254_0225_BD0CVWABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11R-A115-07 4d28bcbc-dbdd-46f8-9329-49f359480a97 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421423.TCGA-D8-A147-01A-11R-A115-07.110527_UNC10-SN254_0225_BD0CVWABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A147 TCGA-D8-A147-01A TCGA-D8-A147-01A-11W-A12T-09 ae3000e2-a04e-49b4-b9db-201212181c46 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A147.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A147 TCGA-D8-A147-10A TCGA-D8-A147-10A-01D-A10Z-02 b457621a-e912-4ced-a027-8ec76454e4e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A147.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A147 TCGA-D8-A147-10A TCGA-D8-A147-10A-01D-A110-09 4e55052d-a439-4da0-b799-29bd2d174444 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A147.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A147 TCGA-D8-A147-10A TCGA-D8-A147-10A-01D-A110-09 4e55052d-a439-4da0-b799-29bd2d174444 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-D8-A147 TCGA-D8-A147-10A TCGA-D8-A147-10A-01D-A113-01 c9da3e22-5f0d-4af5-ab73-eac1fd3be4c7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A147.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A147 TCGA-D8-A147-10A TCGA-D8-A147-10A-01D-A113-01 c9da3e22-5f0d-4af5-ab73-eac1fd3be4c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A04_735228.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-D8-A147 TCGA-D8-A147-10A TCGA-D8-A147-10A-01D-A113-01 c9da3e22-5f0d-4af5-ab73-eac1fd3be4c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A04_735228.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A147 TCGA-D8-A147-10A TCGA-D8-A147-10A-01D-A113-01 c9da3e22-5f0d-4af5-ab73-eac1fd3be4c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A04_735228.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A147 TCGA-D8-A147-10A TCGA-D8-A147-10A-01D-A113-01 c9da3e22-5f0d-4af5-ab73-eac1fd3be4c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A04_735228.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A147 TCGA-D8-A147-10A TCGA-D8-A147-10A-01D-A113-01 c9da3e22-5f0d-4af5-ab73-eac1fd3be4c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A04_735228.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A147 TCGA-D8-A147-10A TCGA-D8-A147-10A-01D-A113-01 c9da3e22-5f0d-4af5-ab73-eac1fd3be4c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A04_735228.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A147 TCGA-D8-A147-10A TCGA-D8-A147-10A-01D-A113-01 c9da3e22-5f0d-4af5-ab73-eac1fd3be4c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A04_735228.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-D8-A147 TCGA-D8-A147-10A TCGA-D8-A147-10A-01D-A113-01 c9da3e22-5f0d-4af5-ab73-eac1fd3be4c7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A04_735228.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-D8-A147 TCGA-D8-A147-10A TCGA-D8-A147-10A-01W-A12U-09 fb0929b0-aeff-4036-b0f9-551030cf3798 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-D8-A147.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-D8-A1J8 TCGA-D8-A1J8-01A TCGA-D8-A1J8-01A-11D-A13I-02 6cdb5b21-ee90-4318-affd-fbf6ab50d7b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1J8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1J8 TCGA-D8-A1J8-01A TCGA-D8-A1J8-01A-11D-A13J-01 809e26fd-e8ab-4ad2-aaac-25fbfe767682 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1J8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1J8 TCGA-D8-A1J8-01A TCGA-D8-A1J8-01A-11D-A13J-01 809e26fd-e8ab-4ad2-aaac-25fbfe767682 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C01_772134.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-D8-A1J8 TCGA-D8-A1J8-01A TCGA-D8-A1J8-01A-11D-A13J-01 809e26fd-e8ab-4ad2-aaac-25fbfe767682 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C01_772134.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1J8 TCGA-D8-A1J8-01A TCGA-D8-A1J8-01A-11D-A13J-01 809e26fd-e8ab-4ad2-aaac-25fbfe767682 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C01_772134.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1J8 TCGA-D8-A1J8-01A TCGA-D8-A1J8-01A-11D-A13J-01 809e26fd-e8ab-4ad2-aaac-25fbfe767682 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C01_772134.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1J8 TCGA-D8-A1J8-01A TCGA-D8-A1J8-01A-11D-A13J-01 809e26fd-e8ab-4ad2-aaac-25fbfe767682 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C01_772134.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1J8 TCGA-D8-A1J8-01A TCGA-D8-A1J8-01A-11D-A13J-01 809e26fd-e8ab-4ad2-aaac-25fbfe767682 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C01_772134.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1J8 TCGA-D8-A1J8-01A TCGA-D8-A1J8-01A-11D-A13J-01 809e26fd-e8ab-4ad2-aaac-25fbfe767682 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C01_772134.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1J8 TCGA-D8-A1J8-01A TCGA-D8-A1J8-01A-11D-A13J-01 809e26fd-e8ab-4ad2-aaac-25fbfe767682 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C01_772134.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-D8-A1J8 TCGA-D8-A1J8-01A TCGA-D8-A1J8-01A-11D-A13K-05 b138ef99-9d01-4481-8b1b-db3cddbee7f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1J8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1J8 TCGA-D8-A1J8-01A TCGA-D8-A1J8-01A-11D-A13K-05 b138ef99-9d01-4481-8b1b-db3cddbee7f4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818129_R05C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-D8-A1J8 TCGA-D8-A1J8-01A TCGA-D8-A1J8-01A-11D-A13K-05 b138ef99-9d01-4481-8b1b-db3cddbee7f4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818129_R05C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-D8-A1J8 TCGA-D8-A1J8-01A TCGA-D8-A1J8-01A-11D-A13K-05 b138ef99-9d01-4481-8b1b-db3cddbee7f4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-D8-A1J8-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-D8-A1J8 TCGA-D8-A1J8-01A TCGA-D8-A1J8-01A-11D-A13K-05 b138ef99-9d01-4481-8b1b-db3cddbee7f4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-D8-A1J8-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-D8-A1J8 TCGA-D8-A1J8-01A TCGA-D8-A1J8-01A-11D-A13L-09 1857f611-3082-45d3-801c-800e685ade07 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1J8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1J8 TCGA-D8-A1J8-01A TCGA-D8-A1J8-01A-11R-A13P-13 ee8faf5c-f107-4c87-8a2f-04d42214860c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1J8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1J8 TCGA-D8-A1J8-01A TCGA-D8-A1J8-01A-11R-A13P-13 ee8faf5c-f107-4c87-8a2f-04d42214860c miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A1J8-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A1J8 TCGA-D8-A1J8-01A TCGA-D8-A1J8-01A-11R-A13P-13 ee8faf5c-f107-4c87-8a2f-04d42214860c miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A1J8-01A-11R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A1J8 TCGA-D8-A1J8-01A TCGA-D8-A1J8-01A-11R-A13Q-07 ddb6efb2-2ef7-42a0-b00d-42c5b0fc6aef Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D09_772158.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-D8-A1JB TCGA-D8-A1JB-01A TCGA-D8-A1JB-01A-11D-A13J-01 ba751e6e-5336-423f-81a4-5ec3109ae4e7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D09_772158.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JB TCGA-D8-A1JB-01A TCGA-D8-A1JB-01A-11D-A13J-01 ba751e6e-5336-423f-81a4-5ec3109ae4e7 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D09_772158.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JB TCGA-D8-A1JB-01A TCGA-D8-A1JB-01A-11D-A13J-01 ba751e6e-5336-423f-81a4-5ec3109ae4e7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D09_772158.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JB TCGA-D8-A1JB-01A TCGA-D8-A1JB-01A-11D-A13J-01 ba751e6e-5336-423f-81a4-5ec3109ae4e7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D09_772158.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JB TCGA-D8-A1JB-01A TCGA-D8-A1JB-01A-11D-A13J-01 ba751e6e-5336-423f-81a4-5ec3109ae4e7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D09_772158.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-D8-A1JB TCGA-D8-A1JB-01A TCGA-D8-A1JB-01A-11D-A13K-05 90b0fc6f-a223-439e-a4a0-ca2a4b3a5adb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JB TCGA-D8-A1JB-01A TCGA-D8-A1JB-01A-11D-A13K-05 90b0fc6f-a223-439e-a4a0-ca2a4b3a5adb DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818145_R05C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-D8-A1JB TCGA-D8-A1JB-01A TCGA-D8-A1JB-01A-11D-A13K-05 90b0fc6f-a223-439e-a4a0-ca2a4b3a5adb DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818145_R05C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-D8-A1JB TCGA-D8-A1JB-01A TCGA-D8-A1JB-01A-11D-A13K-05 90b0fc6f-a223-439e-a4a0-ca2a4b3a5adb DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-D8-A1JB-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-D8-A1JB TCGA-D8-A1JB-01A TCGA-D8-A1JB-01A-11D-A13K-05 90b0fc6f-a223-439e-a4a0-ca2a4b3a5adb DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-D8-A1JB-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-D8-A1JB TCGA-D8-A1JB-01A TCGA-D8-A1JB-01A-11D-A13L-09 54621c54-b7ef-48e4-aa68-e2fe10bf0afb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JB TCGA-D8-A1JB-01A TCGA-D8-A1JB-01A-11R-A13P-13 0481f3f1-5d04-411f-a15f-b82521fec4a5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JB TCGA-D8-A1JB-01A TCGA-D8-A1JB-01A-11R-A13P-13 0481f3f1-5d04-411f-a15f-b82521fec4a5 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A1JB-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A1JB TCGA-D8-A1JB-01A TCGA-D8-A1JB-01A-11R-A13P-13 0481f3f1-5d04-411f-a15f-b82521fec4a5 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_456561.TCGA-D8-A1JB-01A-11R-A13Q-07.110829_UNC10-SN254_0271_AC00PWABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1JB TCGA-D8-A1JB-01A TCGA-D8-A1JB-01A-11R-A13Q-07 45fe02d2-5d68-43c4-9cea-7da6e16a55a2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_456704.TCGA-D8-A1JB-01A-11R-A13Q-07.110829_UNC10-SN254_0271_AC00PWABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1JB TCGA-D8-A1JB-01A TCGA-D8-A1JB-01A-11R-A13Q-07 45fe02d2-5d68-43c4-9cea-7da6e16a55a2 RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JB TCGA-D8-A1JB-10A TCGA-D8-A1JB-10A-01D-A13N-01 b8c81ac7-de7e-4682-8d7f-3dc98d30ae67 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JB TCGA-D8-A1JB-10A TCGA-D8-A1JB-10A-01D-A13N-01 b8c81ac7-de7e-4682-8d7f-3dc98d30ae67 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C05_772090.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-D8-A1JB TCGA-D8-A1JB-10A TCGA-D8-A1JB-10A-01D-A13N-01 b8c81ac7-de7e-4682-8d7f-3dc98d30ae67 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C05_772090.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JB TCGA-D8-A1JB-10A TCGA-D8-A1JB-10A-01D-A13N-01 b8c81ac7-de7e-4682-8d7f-3dc98d30ae67 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C05_772090.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JB TCGA-D8-A1JB-10A TCGA-D8-A1JB-10A-01D-A13N-01 b8c81ac7-de7e-4682-8d7f-3dc98d30ae67 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C05_772090.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-D8-A1JB TCGA-D8-A1JB-10A TCGA-D8-A1JB-10A-01D-A13O-09 999fc643-568d-4513-9a75-6c68987a2628 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JB TCGA-D8-A1JB-10A TCGA-D8-A1JB-10A-01W-A14R-09 f11391eb-c59b-43ee-bbf2-ba42f4bf4951 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JC TCGA-D8-A1JC-01A TCGA-D8-A1JC-01A-11D-A13I-02 ad86362f-36cd-45be-bb21-9225d82e867a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JC TCGA-D8-A1JC-01A TCGA-D8-A1JC-01A-11D-A13J-01 d7bb6fff-6305-4980-ab29-0bb9757b7687 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JC TCGA-D8-A1JC-01A TCGA-D8-A1JC-01A-11D-A13J-01 d7bb6fff-6305-4980-ab29-0bb9757b7687 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D08_772218.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-D8-A1JC TCGA-D8-A1JC-01A TCGA-D8-A1JC-01A-11D-A13J-01 d7bb6fff-6305-4980-ab29-0bb9757b7687 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D08_772218.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JC TCGA-D8-A1JC-01A TCGA-D8-A1JC-01A-11D-A13J-01 d7bb6fff-6305-4980-ab29-0bb9757b7687 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D08_772218.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JC TCGA-D8-A1JC-01A TCGA-D8-A1JC-01A-11D-A13J-01 d7bb6fff-6305-4980-ab29-0bb9757b7687 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D08_772218.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JC TCGA-D8-A1JC-01A TCGA-D8-A1JC-01A-11D-A13J-01 d7bb6fff-6305-4980-ab29-0bb9757b7687 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JC TCGA-D8-A1JC-01A TCGA-D8-A1JC-01A-11D-A13K-05 f3dfac4b-7979-4b22-93cd-1055d19051a3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818145_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-D8-A1JC TCGA-D8-A1JC-01A TCGA-D8-A1JC-01A-11D-A13K-05 f3dfac4b-7979-4b22-93cd-1055d19051a3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818145_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-D8-A1JC TCGA-D8-A1JC-01A TCGA-D8-A1JC-01A-11D-A13K-05 f3dfac4b-7979-4b22-93cd-1055d19051a3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-D8-A1JC-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-D8-A1JC TCGA-D8-A1JC-01A TCGA-D8-A1JC-01A-11D-A13K-05 f3dfac4b-7979-4b22-93cd-1055d19051a3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-D8-A1JC-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-D8-A1JC TCGA-D8-A1JC-01A TCGA-D8-A1JC-01A-11D-A13L-09 63a9d14f-d91a-47af-8ef6-8124193aa110 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JC TCGA-D8-A1JC-01A TCGA-D8-A1JC-01A-11R-A13P-13 308fec41-d028-42a3-93c9-3fdd7e6d8556 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JC TCGA-D8-A1JC-01A TCGA-D8-A1JC-01A-11R-A13P-13 308fec41-d028-42a3-93c9-3fdd7e6d8556 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A1JC-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A1JC TCGA-D8-A1JC-01A TCGA-D8-A1JC-01A-11R-A13P-13 308fec41-d028-42a3-93c9-3fdd7e6d8556 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_512270.TCGA-D8-A1JC-01A-11R-A13Q-07.110829_UNC11-SN627_0148_BD0DGAABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1JC TCGA-D8-A1JC-01A TCGA-D8-A1JC-01A-11R-A13Q-07 d69c60ae-d21b-4e6e-89c5-ef0750a31c71 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_512271.TCGA-D8-A1JC-01A-11R-A13Q-07.110829_UNC11-SN627_0148_BD0DGAABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1JC TCGA-D8-A1JC-01A TCGA-D8-A1JC-01A-11R-A13Q-07 d69c60ae-d21b-4e6e-89c5-ef0750a31c71 RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C04_772182.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-D8-A1JC TCGA-D8-A1JC-10A TCGA-D8-A1JC-10A-01D-A13N-01 685d41ae-9173-4c46-8e6e-992fa0a3a714 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C04_772182.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JC TCGA-D8-A1JC-10A TCGA-D8-A1JC-10A-01D-A13N-01 685d41ae-9173-4c46-8e6e-992fa0a3a714 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E02_772206.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-D8-A1JE TCGA-D8-A1JE-01A TCGA-D8-A1JE-01A-11D-A13J-01 ff8bc49a-9c34-45ab-864b-0e052fd6e594 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E02_772206.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JE TCGA-D8-A1JE-01A TCGA-D8-A1JE-01A-11D-A13J-01 ff8bc49a-9c34-45ab-864b-0e052fd6e594 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E02_772206.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JE TCGA-D8-A1JE-01A TCGA-D8-A1JE-01A-11D-A13J-01 ff8bc49a-9c34-45ab-864b-0e052fd6e594 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E02_772206.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JE TCGA-D8-A1JE-01A TCGA-D8-A1JE-01A-11D-A13J-01 ff8bc49a-9c34-45ab-864b-0e052fd6e594 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E02_772206.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JE TCGA-D8-A1JE-01A TCGA-D8-A1JE-01A-11D-A13J-01 ff8bc49a-9c34-45ab-864b-0e052fd6e594 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E02_772206.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-D8-A1JE TCGA-D8-A1JE-01A TCGA-D8-A1JE-01A-11D-A13K-05 2d44c310-f06e-41b1-9b1b-1d095183aa8b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JE TCGA-D8-A1JE-01A TCGA-D8-A1JE-01A-11D-A13K-05 2d44c310-f06e-41b1-9b1b-1d095183aa8b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818129_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-D8-A1JE TCGA-D8-A1JE-01A TCGA-D8-A1JE-01A-11D-A13K-05 2d44c310-f06e-41b1-9b1b-1d095183aa8b DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-D8-A1JE-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-D8-A1JE TCGA-D8-A1JE-01A TCGA-D8-A1JE-01A-11D-A13L-09 bb34512b-2432-4256-968c-d7fdf38f126a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JE TCGA-D8-A1JE-01A TCGA-D8-A1JE-01A-11R-A13P-13 17d18d17-72a4-45f2-b0ee-e44d8d54ccc4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JE TCGA-D8-A1JE-01A TCGA-D8-A1JE-01A-11R-A13P-13 17d18d17-72a4-45f2-b0ee-e44d8d54ccc4 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A1JE-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A1JE TCGA-D8-A1JE-01A TCGA-D8-A1JE-01A-11R-A13P-13 17d18d17-72a4-45f2-b0ee-e44d8d54ccc4 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_483148.TCGA-D8-A1JE-01A-11R-A13Q-07.110809_UNC10-SN254_0260_BD0DKNABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1JE TCGA-D8-A1JE-01A TCGA-D8-A1JE-01A-11R-A13Q-07 c7139402-146f-4c49-bcd0-f2a6a378911e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_483164.TCGA-D8-A1JE-01A-11R-A13Q-07.110809_UNC10-SN254_0260_BD0DKNABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1JE TCGA-D8-A1JE-01A TCGA-D8-A1JE-01A-11R-A13Q-07 c7139402-146f-4c49-bcd0-f2a6a378911e RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JE TCGA-D8-A1JE-10A TCGA-D8-A1JE-10A-01D-A13N-01 f7fa2bd8-c36f-4de5-96fb-cac69e7e1cb4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JE TCGA-D8-A1JE-10A TCGA-D8-A1JE-10A-01D-A13N-01 f7fa2bd8-c36f-4de5-96fb-cac69e7e1cb4 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F09_772122.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JG TCGA-D8-A1JG-01B TCGA-D8-A1JG-01B-11D-A13J-01 0dd5d01d-8c6d-48ff-9cc0-fdc8d853b87c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F09_772122.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JG TCGA-D8-A1JG-01B TCGA-D8-A1JG-01B-11D-A13J-01 0dd5d01d-8c6d-48ff-9cc0-fdc8d853b87c SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C08_772120.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JG TCGA-D8-A1JG-10A TCGA-D8-A1JG-10A-01D-A13N-01 fcd0c6da-ee5f-453a-9f3b-b13e2969777c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C08_772120.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JG TCGA-D8-A1JG-10A TCGA-D8-A1JG-10A-01D-A13N-01 fcd0c6da-ee5f-453a-9f3b-b13e2969777c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C08_772120.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JG TCGA-D8-A1JG-10A TCGA-D8-A1JG-10A-01D-A13N-01 fcd0c6da-ee5f-453a-9f3b-b13e2969777c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C08_772120.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-D8-A1JG TCGA-D8-A1JG-10A TCGA-D8-A1JG-10A-01D-A13O-09 56cc7ef4-ecf0-41d0-a692-88b352939918 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D06_772178.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-D8-A1JH TCGA-D8-A1JH-01A TCGA-D8-A1JH-01A-11D-A13J-01 fb59b402-77cf-4eac-aaf8-4ebaf715acbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D06_772178.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JH TCGA-D8-A1JH-01A TCGA-D8-A1JH-01A-11D-A13J-01 fb59b402-77cf-4eac-aaf8-4ebaf715acbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D06_772178.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JH TCGA-D8-A1JH-01A TCGA-D8-A1JH-01A-11D-A13J-01 fb59b402-77cf-4eac-aaf8-4ebaf715acbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D06_772178.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JH TCGA-D8-A1JH-01A TCGA-D8-A1JH-01A-11D-A13J-01 fb59b402-77cf-4eac-aaf8-4ebaf715acbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D06_772178.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JH TCGA-D8-A1JH-01A TCGA-D8-A1JH-01A-11D-A13J-01 fb59b402-77cf-4eac-aaf8-4ebaf715acbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D06_772178.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JH TCGA-D8-A1JH-01A TCGA-D8-A1JH-01A-11D-A13J-01 fb59b402-77cf-4eac-aaf8-4ebaf715acbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D06_772178.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JH TCGA-D8-A1JH-01A TCGA-D8-A1JH-01A-11D-A13J-01 fb59b402-77cf-4eac-aaf8-4ebaf715acbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D06_772178.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-D8-A1JH TCGA-D8-A1JH-01A TCGA-D8-A1JH-01A-11D-A13K-05 e10d29ce-a014-44c0-8da8-3cdbd6ab5584 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JH TCGA-D8-A1JH-10A TCGA-D8-A1JH-10A-01D-A13N-01 4dd356b4-eddc-435a-9a2d-c36e24ff3d03 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A08_772172.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-D8-A1JH TCGA-D8-A1JH-10A TCGA-D8-A1JH-10A-01D-A13N-01 4dd356b4-eddc-435a-9a2d-c36e24ff3d03 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JI TCGA-D8-A1JI-01A TCGA-D8-A1JI-01A-11D-A13J-01 06007408-83ae-42dd-b7ea-bd017e97669f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E05_772196.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-D8-A1JI TCGA-D8-A1JI-01A TCGA-D8-A1JI-01A-11D-A13J-01 06007408-83ae-42dd-b7ea-bd017e97669f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E05_772196.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JI TCGA-D8-A1JI-01A TCGA-D8-A1JI-01A-11D-A13J-01 06007408-83ae-42dd-b7ea-bd017e97669f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E05_772196.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JI TCGA-D8-A1JI-01A TCGA-D8-A1JI-01A-11D-A13J-01 06007408-83ae-42dd-b7ea-bd017e97669f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E05_772196.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JI TCGA-D8-A1JI-01A TCGA-D8-A1JI-01A-11D-A13J-01 06007408-83ae-42dd-b7ea-bd017e97669f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E05_772196.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JI TCGA-D8-A1JI-01A TCGA-D8-A1JI-01A-11D-A13J-01 06007408-83ae-42dd-b7ea-bd017e97669f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E05_772196.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JI TCGA-D8-A1JI-01A TCGA-D8-A1JI-01A-11D-A13J-01 06007408-83ae-42dd-b7ea-bd017e97669f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E05_772196.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JI TCGA-D8-A1JI-01A TCGA-D8-A1JI-01A-11D-A13J-01 06007408-83ae-42dd-b7ea-bd017e97669f SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818129_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-D8-A1JI TCGA-D8-A1JI-01A TCGA-D8-A1JI-01A-11D-A13K-05 201ab2a2-c1dd-43ea-bebd-067eebca2483 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818129_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-D8-A1JI TCGA-D8-A1JI-01A TCGA-D8-A1JI-01A-11D-A13K-05 201ab2a2-c1dd-43ea-bebd-067eebca2483 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1JJ TCGA-D8-A1JJ-01A TCGA-D8-A1JJ-01A-31D-A14J-01 d52157a2-cf02-470c-b912-78697cb75086 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_E05_780806.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0 124 07-DEC-11 11.20.29.794000000 AM TCGA-D8-A1JJ TCGA-D8-A1JJ-01A TCGA-D8-A1JJ-01A-31D-A14J-01 d52157a2-cf02-470c-b912-78697cb75086 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_E05_780806.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1JJ TCGA-D8-A1JJ-01A TCGA-D8-A1JJ-01A-31D-A14J-01 d52157a2-cf02-470c-b912-78697cb75086 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_E05_780806.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1JJ TCGA-D8-A1JJ-01A TCGA-D8-A1JJ-01A-31D-A14J-01 d52157a2-cf02-470c-b912-78697cb75086 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_E05_780806.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1JJ TCGA-D8-A1JJ-01A TCGA-D8-A1JJ-01A-31D-A14J-01 d52157a2-cf02-470c-b912-78697cb75086 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_E05_780806.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1JJ TCGA-D8-A1JJ-01A TCGA-D8-A1JJ-01A-31D-A14J-01 d52157a2-cf02-470c-b912-78697cb75086 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_E05_780806.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1JJ TCGA-D8-A1JJ-01A TCGA-D8-A1JJ-01A-31D-A14J-01 d52157a2-cf02-470c-b912-78697cb75086 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_E05_780806.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1JJ TCGA-D8-A1JJ-01A TCGA-D8-A1JJ-01A-31D-A14J-01 d52157a2-cf02-470c-b912-78697cb75086 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_E05_780806.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0 124 07-DEC-11 01.00.01.995000000 PM TCGA-D8-A1JJ TCGA-D8-A1JJ-01A TCGA-D8-A1JJ-01A-31D-A14K-09 412f96a6-6599-40a6-9dd2-afba8c643910 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1JJ TCGA-D8-A1JJ-01A TCGA-D8-A1JJ-01A-31D-A14N-05 0ccff6ae-1d06-45fa-ad56-d4eeb0d2d5e0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1JJ TCGA-D8-A1JJ-01A TCGA-D8-A1JJ-01A-31D-A14N-05 0ccff6ae-1d06-45fa-ad56-d4eeb0d2d5e0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.12.1.0/6042316130_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.12.1.0 124 07-NOV-11 04.11.38.706000000 PM TCGA-D8-A1JJ TCGA-D8-A1JJ-01A TCGA-D8-A1JJ-01A-31D-A14N-05 0ccff6ae-1d06-45fa-ad56-d4eeb0d2d5e0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.12.1.0/6042316130_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.12.1.0 124 07-NOV-11 04.11.38.706000000 PM TCGA-D8-A1JJ TCGA-D8-A1JJ-01A TCGA-D8-A1JJ-01A-31D-A14N-05 0ccff6ae-1d06-45fa-ad56-d4eeb0d2d5e0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.12.1.0/jhu-usc.edu_BRCA.HumanMethylation450.12.lvl-2.TCGA-D8-A1JJ-01A-31D-A14N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.12.1.0 124 07-NOV-11 04.55.54.995000000 PM TCGA-D8-A1JJ TCGA-D8-A1JJ-01A TCGA-D8-A1JJ-01A-31D-A14N-05 0ccff6ae-1d06-45fa-ad56-d4eeb0d2d5e0 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.12.1.0/jhu-usc.edu_BRCA.HumanMethylation450.12.lvl-3.TCGA-D8-A1JJ-01A-31D-A14N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.12.1.0 124 07-NOV-11 05.36.33.757000000 PM TCGA-D8-A1JJ TCGA-D8-A1JJ-01A TCGA-D8-A1JJ-01A-31R-A14L-13 af2ca337-a05b-476b-99e4-de8f24a3f726 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1JJ TCGA-D8-A1JJ-01A TCGA-D8-A1JJ-01A-31R-A14L-13 af2ca337-a05b-476b-99e4-de8f24a3f726 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A1JJ-01A-31R-A14L-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 124 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A1JJ TCGA-D8-A1JJ-01A TCGA-D8-A1JJ-01A-31R-A14L-13 af2ca337-a05b-476b-99e4-de8f24a3f726 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A1JJ-01A-31R-A14L-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 124 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A1JJ TCGA-D8-A1JJ-01A TCGA-D8-A1JJ-01A-31R-A14M-07 091cb252-dd08-4e9c-939c-749f595713f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1JJ TCGA-D8-A1JJ-01A TCGA-D8-A1JJ-01A-31R-A14M-07 091cb252-dd08-4e9c-939c-749f595713f6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_574154.TCGA-D8-A1JJ-01A-31R-A14M-07.110921_UNC16-SN851_0090_BB060BABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 124 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1JJ TCGA-D8-A1JJ-01A TCGA-D8-A1JJ-01A-31R-A14M-07 091cb252-dd08-4e9c-939c-749f595713f6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_574156.TCGA-D8-A1JJ-01A-31R-A14M-07.110921_UNC16-SN851_0090_BB060BABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 124 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1JJ TCGA-D8-A1JJ-01A TCGA-D8-A1JJ-01A-31R-A14M-07 091cb252-dd08-4e9c-939c-749f595713f6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_574161.TCGA-D8-A1JJ-01A-31R-A14M-07.110921_UNC16-SN851_0090_BB060BABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 124 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1JJ TCGA-D8-A1JJ-01A TCGA-D8-A1JJ-01A-31W-A16I-09 bef81c07-81ea-4ca4-9187-fab3eb008d48 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1JJ TCGA-D8-A1JJ-10A TCGA-D8-A1JJ-10A-01D-A14I-02 caa92d00-651a-44ee-b9cc-1be2ce3b4d86 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1JJ TCGA-D8-A1JJ-10A TCGA-D8-A1JJ-10A-01D-A14J-01 268f2830-932c-41bf-86dc-a37289938865 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1JJ TCGA-D8-A1JJ-10A TCGA-D8-A1JJ-10A-01D-A14J-01 268f2830-932c-41bf-86dc-a37289938865 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A12_780878.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0 124 07-DEC-11 11.20.29.794000000 AM TCGA-D8-A1JJ TCGA-D8-A1JJ-10A TCGA-D8-A1JJ-10A-01D-A14J-01 268f2830-932c-41bf-86dc-a37289938865 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A12_780878.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1JJ TCGA-D8-A1JJ-10A TCGA-D8-A1JJ-10A-01D-A14J-01 268f2830-932c-41bf-86dc-a37289938865 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A12_780878.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1JJ TCGA-D8-A1JJ-10A TCGA-D8-A1JJ-10A-01D-A14J-01 268f2830-932c-41bf-86dc-a37289938865 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A12_780878.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1JJ TCGA-D8-A1JJ-10A TCGA-D8-A1JJ-10A-01D-A14J-01 268f2830-932c-41bf-86dc-a37289938865 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A12_780878.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1JJ TCGA-D8-A1JJ-10A TCGA-D8-A1JJ-10A-01D-A14J-01 268f2830-932c-41bf-86dc-a37289938865 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A12_780878.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1JJ TCGA-D8-A1JJ-10A TCGA-D8-A1JJ-10A-01D-A14J-01 268f2830-932c-41bf-86dc-a37289938865 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A12_780878.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1JJ TCGA-D8-A1JJ-10A TCGA-D8-A1JJ-10A-01D-A14J-01 268f2830-932c-41bf-86dc-a37289938865 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A12_780878.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0 124 07-DEC-11 01.00.01.995000000 PM TCGA-D8-A1JJ TCGA-D8-A1JJ-10A TCGA-D8-A1JJ-10A-01D-A14K-09 a022c9a2-3e8a-4377-abed-33cdfbc85b18 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1JJ TCGA-D8-A1JJ-10A TCGA-D8-A1JJ-10A-01W-A16I-09 f9bdc52f-96be-439d-b73c-8729c5728827 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1JK TCGA-D8-A1JK-01A TCGA-D8-A1JK-01A-11D-A13I-02 ab67601d-c6f5-4a41-9c8f-03d8b39eeb96 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JK TCGA-D8-A1JK-01A TCGA-D8-A1JK-01A-11D-A13J-01 7013da0d-5e90-4f8d-a489-8077b55309b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JK TCGA-D8-A1JK-01A TCGA-D8-A1JK-01A-11D-A13J-01 7013da0d-5e90-4f8d-a489-8077b55309b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D11_772176.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-D8-A1JK TCGA-D8-A1JK-01A TCGA-D8-A1JK-01A-11D-A13J-01 7013da0d-5e90-4f8d-a489-8077b55309b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D11_772176.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JK TCGA-D8-A1JK-01A TCGA-D8-A1JK-01A-11D-A13J-01 7013da0d-5e90-4f8d-a489-8077b55309b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D11_772176.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JK TCGA-D8-A1JK-01A TCGA-D8-A1JK-01A-11D-A13J-01 7013da0d-5e90-4f8d-a489-8077b55309b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D11_772176.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JK TCGA-D8-A1JK-01A TCGA-D8-A1JK-01A-11D-A13J-01 7013da0d-5e90-4f8d-a489-8077b55309b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D11_772176.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JK TCGA-D8-A1JK-01A TCGA-D8-A1JK-01A-11D-A13J-01 7013da0d-5e90-4f8d-a489-8077b55309b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D11_772176.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JK TCGA-D8-A1JK-01A TCGA-D8-A1JK-01A-11D-A13J-01 7013da0d-5e90-4f8d-a489-8077b55309b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D11_772176.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JK TCGA-D8-A1JK-01A TCGA-D8-A1JK-01A-11D-A13J-01 7013da0d-5e90-4f8d-a489-8077b55309b0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D11_772176.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-D8-A1JK TCGA-D8-A1JK-01A TCGA-D8-A1JK-01A-11D-A13K-05 481f143a-2abf-4dd2-8563-a1c6bdbd3722 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JK TCGA-D8-A1JK-01A TCGA-D8-A1JK-01A-11D-A13K-05 481f143a-2abf-4dd2-8563-a1c6bdbd3722 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818145_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-D8-A1JK TCGA-D8-A1JK-01A TCGA-D8-A1JK-01A-11D-A13K-05 481f143a-2abf-4dd2-8563-a1c6bdbd3722 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818145_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-D8-A1JK TCGA-D8-A1JK-01A TCGA-D8-A1JK-01A-11D-A13K-05 481f143a-2abf-4dd2-8563-a1c6bdbd3722 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-D8-A1JK-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-D8-A1JK TCGA-D8-A1JK-01A TCGA-D8-A1JK-01A-11D-A13K-05 481f143a-2abf-4dd2-8563-a1c6bdbd3722 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-D8-A1JK-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-D8-A1JK TCGA-D8-A1JK-01A TCGA-D8-A1JK-01A-11D-A13L-09 fadaa39d-ebd2-4887-ae54-1fca12287fcf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JK TCGA-D8-A1JK-01A TCGA-D8-A1JK-01A-11R-A13P-13 771d306c-2b33-4f27-9afd-3fd8c3b05f5a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JK TCGA-D8-A1JK-01A TCGA-D8-A1JK-01A-11R-A13P-13 771d306c-2b33-4f27-9afd-3fd8c3b05f5a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A1JK-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A1JK TCGA-D8-A1JK-01A TCGA-D8-A1JK-01A-11R-A13P-13 771d306c-2b33-4f27-9afd-3fd8c3b05f5a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A1JK-01A-11R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A1JK TCGA-D8-A1JK-01A TCGA-D8-A1JK-01A-11R-A13Q-07 f7dd2e6b-a87e-467b-890a-3c422ae3dea7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JK TCGA-D8-A1JK-01A TCGA-D8-A1JK-01A-11R-A13Q-07 f7dd2e6b-a87e-467b-890a-3c422ae3dea7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_456430.TCGA-D8-A1JK-01A-11R-A13Q-07.110829_UNC10-SN254_0271_AC00PWABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1JK TCGA-D8-A1JK-01A TCGA-D8-A1JK-01A-11R-A13Q-07 f7dd2e6b-a87e-467b-890a-3c422ae3dea7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_456486.TCGA-D8-A1JK-01A-11R-A13Q-07.110829_UNC10-SN254_0271_AC00PWABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1JK TCGA-D8-A1JK-01A TCGA-D8-A1JK-01A-11R-A13Q-07 f7dd2e6b-a87e-467b-890a-3c422ae3dea7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_456608.TCGA-D8-A1JK-01A-11R-A13Q-07.110829_UNC10-SN254_0271_AC00PWABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1JK TCGA-D8-A1JK-01A TCGA-D8-A1JK-01A-11W-A14Q-09 84a09bfb-dc63-4224-8e65-1d9799c169cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JK TCGA-D8-A1JK-10A TCGA-D8-A1JK-10A-01D-A13M-02 7b870011-05cb-4059-a840-159a41991190 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JK TCGA-D8-A1JK-10A TCGA-D8-A1JK-10A-01D-A13N-01 7284372a-9a89-424e-84d9-886acfebde5b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JK TCGA-D8-A1JK-10A TCGA-D8-A1JK-10A-01D-A13N-01 7284372a-9a89-424e-84d9-886acfebde5b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F03_772070.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-D8-A1JK TCGA-D8-A1JK-10A TCGA-D8-A1JK-10A-01D-A13N-01 7284372a-9a89-424e-84d9-886acfebde5b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F03_772070.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JK TCGA-D8-A1JK-10A TCGA-D8-A1JK-10A-01D-A13N-01 7284372a-9a89-424e-84d9-886acfebde5b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F03_772070.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JK TCGA-D8-A1JK-10A TCGA-D8-A1JK-10A-01D-A13N-01 7284372a-9a89-424e-84d9-886acfebde5b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F03_772070.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JK TCGA-D8-A1JK-10A TCGA-D8-A1JK-10A-01D-A13N-01 7284372a-9a89-424e-84d9-886acfebde5b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F03_772070.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JK TCGA-D8-A1JK-10A TCGA-D8-A1JK-10A-01D-A13N-01 7284372a-9a89-424e-84d9-886acfebde5b SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F03_772070.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-D8-A1JK TCGA-D8-A1JK-10A TCGA-D8-A1JK-10A-01D-A13O-09 e61906d0-87d8-4d8a-9ccb-a075759744ff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JK TCGA-D8-A1JK-10A TCGA-D8-A1JK-10A-01W-A14R-09 e45b0c4f-a777-4ceb-9dbe-71dd89096def Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F11_772174.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JL TCGA-D8-A1JL-01A TCGA-D8-A1JL-01A-11D-A13J-01 8f111081-c896-403e-b965-65d3e3a9ba62 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F11_772174.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JL TCGA-D8-A1JL-01A TCGA-D8-A1JL-01A-11D-A13J-01 8f111081-c896-403e-b965-65d3e3a9ba62 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-D8-A1JL-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-D8-A1JL TCGA-D8-A1JL-01A TCGA-D8-A1JL-01A-11D-A13K-05 29526098-c452-495a-a7b7-545f9343bb4c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-D8-A1JL-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-D8-A1JL TCGA-D8-A1JL-01A TCGA-D8-A1JL-01A-11D-A13L-09 425dbc9f-6bee-412a-b77a-22a2724ea4c6 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A1JL-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A1JL TCGA-D8-A1JL-01A TCGA-D8-A1JL-01A-11R-A13P-13 1e2e7ed0-b3d4-4dca-82a3-aa47472be995 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A1JL-01A-11R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A1JL TCGA-D8-A1JL-01A TCGA-D8-A1JL-01A-11R-A13Q-07 b4673313-fa18-43e8-a01b-5cdb3cf5425e Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B01_772124.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JL TCGA-D8-A1JL-10A TCGA-D8-A1JL-10A-01D-A13N-01 026eb95c-5a67-4026-8d88-a4185c0ef7de SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B01_772124.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JL TCGA-D8-A1JL-10A TCGA-D8-A1JL-10A-01D-A13N-01 026eb95c-5a67-4026-8d88-a4185c0ef7de SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-D8-A1JT-01A-31D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-D8-A1JT TCGA-D8-A1JT-01A TCGA-D8-A1JT-01A-31D-A13L-09 3be3972f-4125-44c3-94d6-0ddba2008fcf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JT TCGA-D8-A1JT-01A TCGA-D8-A1JT-01A-31R-A13P-13 0c65df55-6df6-4405-b8aa-c9170e072e5e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JT TCGA-D8-A1JT-01A TCGA-D8-A1JT-01A-31R-A13P-13 0c65df55-6df6-4405-b8aa-c9170e072e5e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A1JT-01A-31R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A1JT TCGA-D8-A1JT-01A TCGA-D8-A1JT-01A-31R-A13P-13 0c65df55-6df6-4405-b8aa-c9170e072e5e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A1JT-01A-31R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A1JT TCGA-D8-A1JT-01A TCGA-D8-A1JT-01A-31R-A13Q-07 33600bf2-ec43-49d2-93dd-4985feb500aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JT TCGA-D8-A1JT-01A TCGA-D8-A1JT-01A-31R-A13Q-07 33600bf2-ec43-49d2-93dd-4985feb500aa RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_512221.TCGA-D8-A1JT-01A-31R-A13Q-07.110829_UNC11-SN627_0148_BD0DGAABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1JT TCGA-D8-A1JT-01A TCGA-D8-A1JT-01A-31R-A13Q-07 33600bf2-ec43-49d2-93dd-4985feb500aa RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_512259.TCGA-D8-A1JT-01A-31R-A13Q-07.110829_UNC11-SN627_0148_BD0DGAABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1JT TCGA-D8-A1JT-01A TCGA-D8-A1JT-01A-31R-A13Q-07 33600bf2-ec43-49d2-93dd-4985feb500aa RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_512338.TCGA-D8-A1JT-01A-31R-A13Q-07.110829_UNC11-SN627_0148_BD0DGAABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1JT TCGA-D8-A1JT-01A TCGA-D8-A1JT-01A-31W-A14Q-09 2f704298-f20a-48da-afe9-3e00a40b8e25 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JT TCGA-D8-A1JT-10A TCGA-D8-A1JT-10A-01D-A13M-02 c8a5edcd-db20-4bc2-a2dc-651de9bb5d15 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JT TCGA-D8-A1JT-10A TCGA-D8-A1JT-10A-01D-A13N-01 2e9723b8-8ff0-4dae-9391-382eb4ccc3bb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JT TCGA-D8-A1JT-10A TCGA-D8-A1JT-10A-01D-A13N-01 2e9723b8-8ff0-4dae-9391-382eb4ccc3bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C10_772106.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-D8-A1JT TCGA-D8-A1JT-10A TCGA-D8-A1JT-10A-01D-A13N-01 2e9723b8-8ff0-4dae-9391-382eb4ccc3bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C10_772106.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JT TCGA-D8-A1JT-10A TCGA-D8-A1JT-10A-01D-A13N-01 2e9723b8-8ff0-4dae-9391-382eb4ccc3bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C10_772106.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JT TCGA-D8-A1JT-10A TCGA-D8-A1JT-10A-01D-A13N-01 2e9723b8-8ff0-4dae-9391-382eb4ccc3bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C10_772106.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JT TCGA-D8-A1JT-10A TCGA-D8-A1JT-10A-01D-A13N-01 2e9723b8-8ff0-4dae-9391-382eb4ccc3bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C10_772106.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JT TCGA-D8-A1JT-10A TCGA-D8-A1JT-10A-01D-A13N-01 2e9723b8-8ff0-4dae-9391-382eb4ccc3bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C10_772106.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JT TCGA-D8-A1JT-10A TCGA-D8-A1JT-10A-01D-A13N-01 2e9723b8-8ff0-4dae-9391-382eb4ccc3bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C10_772106.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JT TCGA-D8-A1JT-10A TCGA-D8-A1JT-10A-01D-A13N-01 2e9723b8-8ff0-4dae-9391-382eb4ccc3bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_C10_772106.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-D8-A1JT TCGA-D8-A1JT-10A TCGA-D8-A1JT-10A-01D-A13O-09 6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JT TCGA-D8-A1JT-10A TCGA-D8-A1JT-10A-01W-A14R-09 68c2c8fb-694a-44db-a6da-4a97d8e4942a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JU TCGA-D8-A1JU-01A TCGA-D8-A1JU-01A-11D-A13I-02 512582fb-3b0a-493e-bb29-8c458eef1d15 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JU TCGA-D8-A1JU-01A TCGA-D8-A1JU-01A-11D-A13J-01 5cfd5649-03c6-4919-b469-522684b6ceef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JU TCGA-D8-A1JU-01A TCGA-D8-A1JU-01A-11D-A13J-01 5cfd5649-03c6-4919-b469-522684b6ceef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D10_772230.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-D8-A1JU TCGA-D8-A1JU-01A TCGA-D8-A1JU-01A-11D-A13J-01 5cfd5649-03c6-4919-b469-522684b6ceef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D10_772230.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JU TCGA-D8-A1JU-01A TCGA-D8-A1JU-01A-11D-A13J-01 5cfd5649-03c6-4919-b469-522684b6ceef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D10_772230.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JU TCGA-D8-A1JU-01A TCGA-D8-A1JU-01A-11D-A13J-01 5cfd5649-03c6-4919-b469-522684b6ceef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D10_772230.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JU TCGA-D8-A1JU-01A TCGA-D8-A1JU-01A-11D-A13J-01 5cfd5649-03c6-4919-b469-522684b6ceef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D10_772230.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JU TCGA-D8-A1JU-01A TCGA-D8-A1JU-01A-11D-A13J-01 5cfd5649-03c6-4919-b469-522684b6ceef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D10_772230.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JU TCGA-D8-A1JU-01A TCGA-D8-A1JU-01A-11D-A13J-01 5cfd5649-03c6-4919-b469-522684b6ceef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D10_772230.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JU TCGA-D8-A1JU-01A TCGA-D8-A1JU-01A-11D-A13J-01 5cfd5649-03c6-4919-b469-522684b6ceef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D10_772230.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-D8-A1JU TCGA-D8-A1JU-01A TCGA-D8-A1JU-01A-11D-A13K-05 01f0dc6b-09ef-4ac9-ba34-5babe855b2be Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JU TCGA-D8-A1JU-01A TCGA-D8-A1JU-01A-11D-A13K-05 01f0dc6b-09ef-4ac9-ba34-5babe855b2be DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818132_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-D8-A1JU TCGA-D8-A1JU-01A TCGA-D8-A1JU-01A-11D-A13K-05 01f0dc6b-09ef-4ac9-ba34-5babe855b2be DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818132_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-D8-A1JU TCGA-D8-A1JU-01A TCGA-D8-A1JU-01A-11D-A13K-05 01f0dc6b-09ef-4ac9-ba34-5babe855b2be DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-D8-A1JU-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-D8-A1JU TCGA-D8-A1JU-01A TCGA-D8-A1JU-01A-11D-A13K-05 01f0dc6b-09ef-4ac9-ba34-5babe855b2be DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-D8-A1JU-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-D8-A1JU TCGA-D8-A1JU-01A TCGA-D8-A1JU-01A-11D-A13L-09 7bff4f75-749d-4a63-9a64-0bcf1cd615ea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JU TCGA-D8-A1JU-01A TCGA-D8-A1JU-01A-11R-A13P-13 2e46d5f5-0064-4bde-8fd1-48b8af5a2fcc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JU TCGA-D8-A1JU-01A TCGA-D8-A1JU-01A-11R-A13P-13 2e46d5f5-0064-4bde-8fd1-48b8af5a2fcc miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A1JU-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A1JU TCGA-D8-A1JU-01A TCGA-D8-A1JU-01A-11R-A13P-13 2e46d5f5-0064-4bde-8fd1-48b8af5a2fcc miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A1JU-01A-11R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A1JU TCGA-D8-A1JU-01A TCGA-D8-A1JU-01A-11R-A13Q-07 8e10b30e-5789-4ad4-a70b-c7a86927ac6b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JU TCGA-D8-A1JU-01A TCGA-D8-A1JU-01A-11R-A13Q-07 8e10b30e-5789-4ad4-a70b-c7a86927ac6b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407778.TCGA-D8-A1JU-01A-11R-A13Q-07.110802_UNC16-SN851_0067_BB07W5ABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1JU TCGA-D8-A1JU-01A TCGA-D8-A1JU-01A-11R-A13Q-07 8e10b30e-5789-4ad4-a70b-c7a86927ac6b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407780.TCGA-D8-A1JU-01A-11R-A13Q-07.110802_UNC16-SN851_0067_BB07W5ABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1JU TCGA-D8-A1JU-01A TCGA-D8-A1JU-01A-11R-A13Q-07 8e10b30e-5789-4ad4-a70b-c7a86927ac6b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407819.TCGA-D8-A1JU-01A-11R-A13Q-07.110802_UNC16-SN851_0067_BB07W5ABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1JU TCGA-D8-A1JU-01A TCGA-D8-A1JU-01A-11W-A14Q-09 7e461cdf-947a-40a6-a035-8c39c66ee0e1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JU TCGA-D8-A1JU-10A TCGA-D8-A1JU-10A-01D-A13M-02 413d4a85-a9a1-439d-871b-41cfacf9df72 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JU TCGA-D8-A1JU-10A TCGA-D8-A1JU-10A-01D-A13N-01 fbb40957-4fb1-4da4-a641-390ee989dbf2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JU TCGA-D8-A1JU-10A TCGA-D8-A1JU-10A-01D-A13N-01 fbb40957-4fb1-4da4-a641-390ee989dbf2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A10_772192.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-D8-A1JU TCGA-D8-A1JU-10A TCGA-D8-A1JU-10A-01D-A13N-01 fbb40957-4fb1-4da4-a641-390ee989dbf2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A10_772192.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JU TCGA-D8-A1JU-10A TCGA-D8-A1JU-10A-01D-A13N-01 fbb40957-4fb1-4da4-a641-390ee989dbf2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A10_772192.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JU TCGA-D8-A1JU-10A TCGA-D8-A1JU-10A-01D-A13N-01 fbb40957-4fb1-4da4-a641-390ee989dbf2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A10_772192.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JU TCGA-D8-A1JU-10A TCGA-D8-A1JU-10A-01D-A13N-01 fbb40957-4fb1-4da4-a641-390ee989dbf2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A10_772192.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JU TCGA-D8-A1JU-10A TCGA-D8-A1JU-10A-01D-A13N-01 fbb40957-4fb1-4da4-a641-390ee989dbf2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A10_772192.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JU TCGA-D8-A1JU-10A TCGA-D8-A1JU-10A-01D-A13N-01 fbb40957-4fb1-4da4-a641-390ee989dbf2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A10_772192.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-D8-A1JU TCGA-D8-A1JU-10A TCGA-D8-A1JU-10A-01D-A13N-01 fbb40957-4fb1-4da4-a641-390ee989dbf2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A10_772192.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-D8-A1JU TCGA-D8-A1JU-10A TCGA-D8-A1JU-10A-01D-A13O-09 cf5ff285-183d-4965-a020-54ab777362ea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JU TCGA-D8-A1JU-10A TCGA-D8-A1JU-10A-01D-A188-09 3cfbf5a4-d74a-40d3-9598-2e7835ef1440 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1JU TCGA-D8-A1JU-10A TCGA-D8-A1JU-10A-01W-A14R-09 36fb0a77-2ba9-4acd-aa2f-2dd79b40dab4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1JU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-D8-A1X5 TCGA-D8-A1X5-01A TCGA-D8-A1X5-01A-11D-A14E-02 2d425600-2e49-4469-98a1-84fc00d4ac08 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1X5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-D8-A1X5 TCGA-D8-A1X5-01A TCGA-D8-A1X5-01A-11D-A14F-01 778e70fe-3515-4314-8035-c97e1970bf69 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.12.1.0/jhu-usc.edu_BRCA.HumanMethylation450.12.lvl-3.TCGA-D8-A1X6-01A-11D-A14N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.12.1.0 124 07-NOV-11 05.36.33.757000000 PM TCGA-D8-A1X6 TCGA-D8-A1X6-01A TCGA-D8-A1X6-01A-11R-A14L-13 6e07c3f1-2dda-451a-a3a1-7d5f86a2fef2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1X6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1X6 TCGA-D8-A1X6-01A TCGA-D8-A1X6-01A-11R-A14L-13 6e07c3f1-2dda-451a-a3a1-7d5f86a2fef2 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1X6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1X6 TCGA-D8-A1X6-10A TCGA-D8-A1X6-10A-01D-A14I-02 d523f7e5-0a14-4ab0-9a6c-d3a7887997d7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1X6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1X6 TCGA-D8-A1X6-10A TCGA-D8-A1X6-10A-01D-A14J-01 c0e27feb-a050-4aa9-b397-49c7d9c0db9f Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C12_780812.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1X6 TCGA-D8-A1X6-10A TCGA-D8-A1X6-10A-01D-A14J-01 c0e27feb-a050-4aa9-b397-49c7d9c0db9f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C12_780812.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1X6 TCGA-D8-A1X6-10A TCGA-D8-A1X6-10A-01D-A14J-01 c0e27feb-a050-4aa9-b397-49c7d9c0db9f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C12_780812.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1X6 TCGA-D8-A1X6-10A TCGA-D8-A1X6-10A-01D-A14J-01 c0e27feb-a050-4aa9-b397-49c7d9c0db9f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C12_780812.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1X6 TCGA-D8-A1X6-10A TCGA-D8-A1X6-10A-01D-A14J-01 c0e27feb-a050-4aa9-b397-49c7d9c0db9f SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0/6057833101_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0 120 07-NOV-11 04.10.35.826000000 PM TCGA-D8-A1XA TCGA-D8-A1XA-01A TCGA-D8-A1XA-01A-11D-A14H-05 25640707-bab5-4311-9215-68e4b8a95463 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0/6057833101_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0 120 07-NOV-11 04.10.35.826000000 PM TCGA-D8-A1XA TCGA-D8-A1XA-01A TCGA-D8-A1XA-01A-11D-A14H-05 25640707-bab5-4311-9215-68e4b8a95463 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-D8-A1XA TCGA-D8-A1XA-01A TCGA-D8-A1XA-01A-11R-A14C-13 24d372d5-d3ec-4334-96de-f7b4cce24d8c miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A1XA-01A-11R-A14C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 120 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A1XA TCGA-D8-A1XA-01A TCGA-D8-A1XA-01A-11R-A14C-13 24d372d5-d3ec-4334-96de-f7b4cce24d8c miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E09_777698.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-D8-A1XA TCGA-D8-A1XA-10A TCGA-D8-A1XA-10A-01D-A14F-01 56535420-390a-445b-93f5-ec991b01badf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E09_777698.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0 120 07-DEC-11 01.00.01.357000000 PM TCGA-D8-A1XA TCGA-D8-A1XA-10A TCGA-D8-A1XA-10A-01D-A14G-09 81ee32ae-fc65-4e2c-bbac-2e22214f817b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-D8-A1XA TCGA-D8-A1XA-10A TCGA-D8-A1XA-10A-01W-A16H-09 8d6accea-b08e-4bd4-bee7-db4c6fdd307e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-D8-A1XB TCGA-D8-A1XB-01A TCGA-D8-A1XB-01A-11D-A14E-02 ee4c9a60-fa38-4c85-94b4-85ba3b9cf7b5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-D8-A1XB TCGA-D8-A1XB-01A TCGA-D8-A1XB-01A-11D-A14F-01 0eae4d42-893c-48ff-b1a3-52ae7d1220ce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-D8-A1XB TCGA-D8-A1XB-01A TCGA-D8-A1XB-01A-11D-A14F-01 0eae4d42-893c-48ff-b1a3-52ae7d1220ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C09_777692.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0 120 07-DEC-11 11.18.53.710000000 AM TCGA-D8-A1XB TCGA-D8-A1XB-01A TCGA-D8-A1XB-01A-11D-A14F-01 0eae4d42-893c-48ff-b1a3-52ae7d1220ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C09_777692.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-D8-A1XB TCGA-D8-A1XB-01A TCGA-D8-A1XB-01A-11D-A14F-01 0eae4d42-893c-48ff-b1a3-52ae7d1220ce SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-D8-A1XC TCGA-D8-A1XC-10A TCGA-D8-A1XC-10A-01W-A16H-09 c02fb215-ea37-493a-b2ab-5b23e95c51aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-D8-A1XD TCGA-D8-A1XD-01A TCGA-D8-A1XD-01A-11D-A14E-02 48f24b35-4af2-4edf-a457-78d135f4eeaf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-D8-A1XD TCGA-D8-A1XD-01A TCGA-D8-A1XD-01A-11D-A14F-01 39b1e20d-51f1-4c8b-9689-a0e054354aa3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-D8-A1XD TCGA-D8-A1XD-01A TCGA-D8-A1XD-01A-11D-A14F-01 39b1e20d-51f1-4c8b-9689-a0e054354aa3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C12_777704.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0 120 07-DEC-11 11.18.53.710000000 AM TCGA-D8-A1XD TCGA-D8-A1XD-01A TCGA-D8-A1XD-01A-11D-A14F-01 39b1e20d-51f1-4c8b-9689-a0e054354aa3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C12_777704.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-D8-A1XD TCGA-D8-A1XD-01A TCGA-D8-A1XD-01A-11D-A14F-01 39b1e20d-51f1-4c8b-9689-a0e054354aa3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C12_777704.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-D8-A1XD TCGA-D8-A1XD-01A TCGA-D8-A1XD-01A-11D-A14F-01 39b1e20d-51f1-4c8b-9689-a0e054354aa3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C12_777704.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-D8-A1XD TCGA-D8-A1XD-01A TCGA-D8-A1XD-01A-11D-A14F-01 39b1e20d-51f1-4c8b-9689-a0e054354aa3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C12_777704.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-D8-A1XD TCGA-D8-A1XD-01A TCGA-D8-A1XD-01A-11D-A14F-01 39b1e20d-51f1-4c8b-9689-a0e054354aa3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C12_777704.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-D8-A1XD TCGA-D8-A1XD-01A TCGA-D8-A1XD-01A-11D-A14F-01 39b1e20d-51f1-4c8b-9689-a0e054354aa3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C12_777704.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-D8-A1XD TCGA-D8-A1XD-01A TCGA-D8-A1XD-01A-11D-A14F-01 39b1e20d-51f1-4c8b-9689-a0e054354aa3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C12_777704.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0 120 07-DEC-11 01.00.01.357000000 PM TCGA-D8-A1XD TCGA-D8-A1XD-01A TCGA-D8-A1XD-01A-11D-A14G-09 ab0d03f8-f241-4eb3-9fad-86c2118cc431 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-D8-A1XD TCGA-D8-A1XD-01A TCGA-D8-A1XD-01A-11D-A14H-05 9a91ad46-1371-4999-a590-3ab48849ba6f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-D8-A1XD TCGA-D8-A1XD-01A TCGA-D8-A1XD-01A-11D-A14H-05 9a91ad46-1371-4999-a590-3ab48849ba6f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0/6057833057_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0 120 07-NOV-11 04.10.35.826000000 PM TCGA-D8-A1XD TCGA-D8-A1XD-01A TCGA-D8-A1XD-01A-11D-A14H-05 9a91ad46-1371-4999-a590-3ab48849ba6f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0/6057833057_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0 120 07-NOV-11 04.10.35.826000000 PM TCGA-D8-A1XD TCGA-D8-A1XD-01A TCGA-D8-A1XD-01A-11D-A14H-05 9a91ad46-1371-4999-a590-3ab48849ba6f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.11.1.0/jhu-usc.edu_BRCA.HumanMethylation450.11.lvl-2.TCGA-D8-A1XD-01A-11D-A14H-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.11.1.0 120 07-NOV-11 04.58.54.079000000 PM TCGA-D8-A1XD TCGA-D8-A1XD-01A TCGA-D8-A1XD-01A-11D-A14H-05 9a91ad46-1371-4999-a590-3ab48849ba6f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.11.1.0/jhu-usc.edu_BRCA.HumanMethylation450.11.lvl-3.TCGA-D8-A1XD-01A-11D-A14H-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.11.1.0 120 07-NOV-11 05.34.44.798000000 PM TCGA-D8-A1XD TCGA-D8-A1XD-01A TCGA-D8-A1XD-01A-11R-A14C-13 91a08ba5-cab2-4dfc-b3d8-1fd8af4c84bb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-D8-A1XD TCGA-D8-A1XD-01A TCGA-D8-A1XD-01A-11R-A14C-13 91a08ba5-cab2-4dfc-b3d8-1fd8af4c84bb miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A1XD-01A-11R-A14C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 120 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A1XD TCGA-D8-A1XD-01A TCGA-D8-A1XD-01A-11R-A14C-13 91a08ba5-cab2-4dfc-b3d8-1fd8af4c84bb miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A1XD-01A-11R-A14C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 120 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A1XD TCGA-D8-A1XD-01A TCGA-D8-A1XD-01A-11R-A14D-07 af520d74-dc8a-4d36-bd2c-80bc23e6d029 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-D8-A1XD TCGA-D8-A1XD-01A TCGA-D8-A1XD-01A-11R-A14D-07 af520d74-dc8a-4d36-bd2c-80bc23e6d029 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_431602.TCGA-D8-A1XD-01A-11R-A14D-07.110805_UNC11-SN627_0135_BD0DKJABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 120 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1XD TCGA-D8-A1XD-01A TCGA-D8-A1XD-01A-11R-A14D-07 af520d74-dc8a-4d36-bd2c-80bc23e6d029 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_431678.TCGA-D8-A1XD-01A-11R-A14D-07.110805_UNC11-SN627_0135_BD0DKJABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 120 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1XD TCGA-D8-A1XD-01A TCGA-D8-A1XD-01A-11R-A14D-07 af520d74-dc8a-4d36-bd2c-80bc23e6d029 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_431917.TCGA-D8-A1XD-01A-11R-A14D-07.110805_UNC11-SN627_0135_BD0DKJABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 120 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1XD TCGA-D8-A1XD-01A TCGA-D8-A1XD-01A-11W-A16H-09 69121a79-87df-496c-abd3-646153cc20c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-D8-A1XD TCGA-D8-A1XD-10A TCGA-D8-A1XD-10A-01D-A14E-02 7ba9be57-3e2c-4eff-85ea-3cdc8c20af0a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-D8-A1XD TCGA-D8-A1XD-10A TCGA-D8-A1XD-10A-01D-A14F-01 368a01da-400a-44bb-8e89-c3e39d517526 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_D01_777612.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_D01_777612.ismpolish.data.txt'. TCGA-D8-A1XD TCGA-D8-A1XD-10A TCGA-D8-A1XD-10A-01D-A14F-01 368a01da-400a-44bb-8e89-c3e39d517526 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_D01_777612.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0 120 07-DEC-11 11.18.53.710000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_D01_777612.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_D01_777612.ismpolish.data.txt'. TCGA-D8-A1XD TCGA-D8-A1XD-10A TCGA-D8-A1XD-10A-01D-A14F-01 368a01da-400a-44bb-8e89-c3e39d517526 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_D01_777612.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_D01_777612.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_D01_777612.ismpolish.data.txt'. TCGA-D8-A1XD TCGA-D8-A1XD-10A TCGA-D8-A1XD-10A-01D-A14G-09 15a9b37e-f4f5-48ce-b747-84bff55f45c2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-D8-A1XD TCGA-D8-A1XD-10A TCGA-D8-A1XD-10A-01W-A16H-09 78b88d62-fd9e-4e1e-b66b-632396b739c5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-D8-A1XF TCGA-D8-A1XF-01A TCGA-D8-A1XF-01A-11D-A14E-02 09d2ce71-f611-4dc8-9fe7-d82980bc9dbd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-D8-A1XF TCGA-D8-A1XF-01A TCGA-D8-A1XF-01A-11D-A14F-01 2084c32d-ed1a-43a7-adbb-ff2338363e11 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-D8-A1XF TCGA-D8-A1XF-01A TCGA-D8-A1XF-01A-11D-A14F-01 2084c32d-ed1a-43a7-adbb-ff2338363e11 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_B03_777684.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-D8-A1XF TCGA-D8-A1XF-01A TCGA-D8-A1XF-01A-11D-A14F-01 2084c32d-ed1a-43a7-adbb-ff2338363e11 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_B03_777684.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-D8-A1XF TCGA-D8-A1XF-01A TCGA-D8-A1XF-01A-11D-A14F-01 2084c32d-ed1a-43a7-adbb-ff2338363e11 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_B03_777684.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-D8-A1XF TCGA-D8-A1XF-01A TCGA-D8-A1XF-01A-11D-A14F-01 2084c32d-ed1a-43a7-adbb-ff2338363e11 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_B03_777684.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0 120 07-DEC-11 01.00.01.357000000 PM TCGA-D8-A1XF TCGA-D8-A1XF-01A TCGA-D8-A1XF-01A-11D-A14G-09 e1587f32-2ff9-40f3-97dd-b45b0f14be46 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.11.1.0/jhu-usc.edu_BRCA.HumanMethylation450.11.lvl-2.TCGA-D8-A1XF-01A-11D-A14H-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.11.1.0 120 07-NOV-11 04.58.54.079000000 PM TCGA-D8-A1XF TCGA-D8-A1XF-01A TCGA-D8-A1XF-01A-11D-A14H-05 0aa00804-5192-49a4-a1e9-d6161ef56634 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.11.1.0/jhu-usc.edu_BRCA.HumanMethylation450.11.lvl-3.TCGA-D8-A1XF-01A-11D-A14H-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.11.1.0 120 07-NOV-11 05.34.44.798000000 PM TCGA-D8-A1XF TCGA-D8-A1XF-01A TCGA-D8-A1XF-01A-11R-A14C-13 3f05b25f-5a54-40a8-b3ba-570a6c257f42 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-D8-A1XF TCGA-D8-A1XF-01A TCGA-D8-A1XF-01A-11R-A14C-13 3f05b25f-5a54-40a8-b3ba-570a6c257f42 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A1XF-01A-11R-A14C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 120 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A1XF TCGA-D8-A1XF-01A TCGA-D8-A1XF-01A-11R-A14C-13 3f05b25f-5a54-40a8-b3ba-570a6c257f42 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XM.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1XM TCGA-D8-A1XM-10A TCGA-D8-A1XM-10A-01D-A14J-01 fab0b0c9-cb1f-422b-bea3-f8c1f81891ca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_F11_780886.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0 124 07-DEC-11 11.20.29.794000000 AM TCGA-D8-A1XM TCGA-D8-A1XM-10A TCGA-D8-A1XM-10A-01D-A14J-01 fab0b0c9-cb1f-422b-bea3-f8c1f81891ca SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_D12_780780.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0 124 07-DEC-11 01.00.01.995000000 PM TCGA-D8-A1XT TCGA-D8-A1XT-10A TCGA-D8-A1XT-10A-01D-A14K-09 5b149a6b-4032-4d61-89da-1b30733c2977 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XT.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1XT TCGA-D8-A1XT-10A TCGA-D8-A1XT-10A-01W-A16I-09 8b126f68-7780-436d-9c1a-eed31957037f Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C10_780952.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0 124 07-DEC-11 01.00.01.995000000 PM TCGA-D8-A1XW TCGA-D8-A1XW-10A TCGA-D8-A1XW-10A-01D-A14K-09 df416cf7-8ddc-4ee0-b925-78a7e849ad84 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1XW TCGA-D8-A1XW-10A TCGA-D8-A1XW-10A-01W-A16I-09 073d9547-9e10-41b4-ba5b-8caab50e5237 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1XY TCGA-D8-A1XY-01A TCGA-D8-A1XY-01A-11D-A14I-02 16349e4c-bb94-411e-8bc8-35780eb44adf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1XY TCGA-D8-A1XY-01A TCGA-D8-A1XY-01A-11D-A14J-01 05936306-3484-48d1-9305-f4596aed82f3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1XY TCGA-D8-A1XY-01A TCGA-D8-A1XY-01A-11D-A14J-01 05936306-3484-48d1-9305-f4596aed82f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_E06_780822.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0 124 07-DEC-11 11.20.29.794000000 AM TCGA-D8-A1XY TCGA-D8-A1XY-01A TCGA-D8-A1XY-01A-11D-A14J-01 05936306-3484-48d1-9305-f4596aed82f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_E06_780822.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1XY TCGA-D8-A1XY-01A TCGA-D8-A1XY-01A-11D-A14J-01 05936306-3484-48d1-9305-f4596aed82f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_E06_780822.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1XY TCGA-D8-A1XY-01A TCGA-D8-A1XY-01A-11D-A14J-01 05936306-3484-48d1-9305-f4596aed82f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_E06_780822.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1XY TCGA-D8-A1XY-01A TCGA-D8-A1XY-01A-11D-A14J-01 05936306-3484-48d1-9305-f4596aed82f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_E06_780822.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1XY TCGA-D8-A1XY-01A TCGA-D8-A1XY-01A-11D-A14J-01 05936306-3484-48d1-9305-f4596aed82f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_E06_780822.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1XY TCGA-D8-A1XY-01A TCGA-D8-A1XY-01A-11D-A14J-01 05936306-3484-48d1-9305-f4596aed82f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_E06_780822.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1XY TCGA-D8-A1XY-01A TCGA-D8-A1XY-01A-11D-A14J-01 05936306-3484-48d1-9305-f4596aed82f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_E06_780822.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0 124 07-DEC-11 01.00.01.995000000 PM TCGA-D8-A1XY TCGA-D8-A1XY-01A TCGA-D8-A1XY-01A-11D-A14K-09 edb6d161-8f50-4c11-8246-487c4ea9a55d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1XY TCGA-D8-A1XY-01A TCGA-D8-A1XY-01A-11D-A14N-05 980658fa-05cd-4dec-8df9-c026e72ab35b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1XY TCGA-D8-A1XY-01A TCGA-D8-A1XY-01A-11D-A14N-05 980658fa-05cd-4dec-8df9-c026e72ab35b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.12.1.0/6042316141_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.12.1.0 124 07-NOV-11 04.11.38.706000000 PM TCGA-D8-A1XY TCGA-D8-A1XY-01A TCGA-D8-A1XY-01A-11D-A14N-05 980658fa-05cd-4dec-8df9-c026e72ab35b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.12.1.0/6042316141_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.12.1.0 124 07-NOV-11 04.11.38.706000000 PM TCGA-D8-A1XY TCGA-D8-A1XY-01A TCGA-D8-A1XY-01A-11D-A14N-05 980658fa-05cd-4dec-8df9-c026e72ab35b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.12.1.0/jhu-usc.edu_BRCA.HumanMethylation450.12.lvl-2.TCGA-D8-A1XY-01A-11D-A14N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.12.1.0 124 07-NOV-11 04.55.54.995000000 PM TCGA-D8-A1XY TCGA-D8-A1XY-01A TCGA-D8-A1XY-01A-11D-A14N-05 980658fa-05cd-4dec-8df9-c026e72ab35b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.12.1.0/jhu-usc.edu_BRCA.HumanMethylation450.12.lvl-3.TCGA-D8-A1XY-01A-11D-A14N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.12.1.0 124 07-NOV-11 05.36.33.757000000 PM TCGA-D8-A1XY TCGA-D8-A1XY-01A TCGA-D8-A1XY-01A-11R-A14L-13 a110fa06-c9b7-461f-96e4-014671903200 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1XY TCGA-D8-A1XY-01A TCGA-D8-A1XY-01A-11R-A14L-13 a110fa06-c9b7-461f-96e4-014671903200 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A1XY-01A-11R-A14L-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 124 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A1XY TCGA-D8-A1XY-01A TCGA-D8-A1XY-01A-11R-A14L-13 a110fa06-c9b7-461f-96e4-014671903200 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A1XY-01A-11R-A14L-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 124 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A1XY TCGA-D8-A1XY-01A TCGA-D8-A1XY-01A-11R-A14M-07 5b233291-8984-4925-8be4-3911f541a15f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1XY TCGA-D8-A1XY-01A TCGA-D8-A1XY-01A-11R-A14M-07 5b233291-8984-4925-8be4-3911f541a15f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_690969.TCGA-D8-A1XY-01A-11R-A14M-07.111005_UNC10-SN254_0285_AB087RABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 124 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1XY TCGA-D8-A1XY-01A TCGA-D8-A1XY-01A-11R-A14M-07 5b233291-8984-4925-8be4-3911f541a15f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_690971.TCGA-D8-A1XY-01A-11R-A14M-07.111005_UNC10-SN254_0285_AB087RABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 124 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1XY TCGA-D8-A1XY-01A TCGA-D8-A1XY-01A-11R-A14M-07 5b233291-8984-4925-8be4-3911f541a15f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_691008.TCGA-D8-A1XY-01A-11R-A14M-07.111005_UNC10-SN254_0285_AB087RABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 124 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1XY TCGA-D8-A1XY-01A TCGA-D8-A1XY-01A-11W-A16I-09 16d14f9b-1df0-4a98-a17c-bde18a89a85b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1XY TCGA-D8-A1XY-10A TCGA-D8-A1XY-10A-01D-A14I-02 0b52f77c-e34a-47b5-ae72-6387359d44f3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1XY TCGA-D8-A1XY-10A TCGA-D8-A1XY-10A-01D-A14J-01 081efca3-7156-4b7a-915c-e8a4f85334db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1XY TCGA-D8-A1XY-10A TCGA-D8-A1XY-10A-01D-A14J-01 081efca3-7156-4b7a-915c-e8a4f85334db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_B01_780942.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0 124 07-DEC-11 11.20.29.794000000 AM TCGA-D8-A1XY TCGA-D8-A1XY-10A TCGA-D8-A1XY-10A-01D-A14J-01 081efca3-7156-4b7a-915c-e8a4f85334db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_B01_780942.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1XY TCGA-D8-A1XY-10A TCGA-D8-A1XY-10A-01D-A14J-01 081efca3-7156-4b7a-915c-e8a4f85334db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_B01_780942.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1XY TCGA-D8-A1XY-10A TCGA-D8-A1XY-10A-01D-A14J-01 081efca3-7156-4b7a-915c-e8a4f85334db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_B01_780942.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1XY TCGA-D8-A1XY-10A TCGA-D8-A1XY-10A-01D-A14J-01 081efca3-7156-4b7a-915c-e8a4f85334db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_B01_780942.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1XY TCGA-D8-A1XY-10A TCGA-D8-A1XY-10A-01D-A14J-01 081efca3-7156-4b7a-915c-e8a4f85334db SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1XZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1XZ TCGA-D8-A1XZ-10A TCGA-D8-A1XZ-10A-01D-A14J-01 f1bcfdd2-c3bd-491a-bd22-cd2c18f4411f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_G03_780838.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0 124 07-DEC-11 11.20.29.794000000 AM TCGA-D8-A1XZ TCGA-D8-A1XZ-10A TCGA-D8-A1XZ-10A-01D-A14J-01 f1bcfdd2-c3bd-491a-bd22-cd2c18f4411f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_G03_780838.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1XZ TCGA-D8-A1XZ-10A TCGA-D8-A1XZ-10A-01D-A14J-01 f1bcfdd2-c3bd-491a-bd22-cd2c18f4411f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_G03_780838.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1XZ TCGA-D8-A1XZ-10A TCGA-D8-A1XZ-10A-01D-A14J-01 f1bcfdd2-c3bd-491a-bd22-cd2c18f4411f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_G03_780838.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1XZ TCGA-D8-A1XZ-10A TCGA-D8-A1XZ-10A-01D-A14J-01 f1bcfdd2-c3bd-491a-bd22-cd2c18f4411f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_G03_780838.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1XZ TCGA-D8-A1XZ-10A TCGA-D8-A1XZ-10A-01D-A14J-01 f1bcfdd2-c3bd-491a-bd22-cd2c18f4411f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_G03_780838.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1XZ TCGA-D8-A1XZ-10A TCGA-D8-A1XZ-10A-01D-A14J-01 f1bcfdd2-c3bd-491a-bd22-cd2c18f4411f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_G03_780838.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1XZ TCGA-D8-A1XZ-10A TCGA-D8-A1XZ-10A-01D-A14J-01 f1bcfdd2-c3bd-491a-bd22-cd2c18f4411f SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1Y0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1Y0 TCGA-D8-A1Y0-01A TCGA-D8-A1Y0-01A-11D-A14J-01 8d743d31-2f7b-4281-ae5b-424e9adc15fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_F01_780814.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0 124 07-DEC-11 11.20.29.794000000 AM TCGA-D8-A1Y0 TCGA-D8-A1Y0-01A TCGA-D8-A1Y0-01A-11D-A14J-01 8d743d31-2f7b-4281-ae5b-424e9adc15fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_F01_780814.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1Y0 TCGA-D8-A1Y0-01A TCGA-D8-A1Y0-01A-11D-A14J-01 8d743d31-2f7b-4281-ae5b-424e9adc15fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_F01_780814.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1Y0 TCGA-D8-A1Y0-01A TCGA-D8-A1Y0-01A-11D-A14J-01 8d743d31-2f7b-4281-ae5b-424e9adc15fe SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_F01_780814.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1Y0 TCGA-D8-A1Y0-01A TCGA-D8-A1Y0-01A-11D-A14J-01 8d743d31-2f7b-4281-ae5b-424e9adc15fe SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_F01_780814.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-D8-A1Y0 TCGA-D8-A1Y0-01A TCGA-D8-A1Y0-01A-11D-A14J-01 8d743d31-2f7b-4281-ae5b-424e9adc15fe SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1Y0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1Y0 TCGA-D8-A1Y0-01A TCGA-D8-A1Y0-01A-11D-A14N-05 c1a6502c-73cc-4a5a-82ea-d21f54f54f34 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.12.1.0/6042316141_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.12.1.0 124 07-NOV-11 04.11.38.706000000 PM TCGA-D8-A1Y0 TCGA-D8-A1Y0-01A TCGA-D8-A1Y0-01A-11D-A14N-05 c1a6502c-73cc-4a5a-82ea-d21f54f54f34 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.12.1.0/jhu-usc.edu_BRCA.HumanMethylation450.12.lvl-3.TCGA-D8-A1Y0-01A-11D-A14N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.12.1.0 124 07-NOV-11 05.36.33.757000000 PM TCGA-D8-A1Y0 TCGA-D8-A1Y0-01A TCGA-D8-A1Y0-01A-11R-A14L-13 71630f8c-5913-410b-8097-3c4374602d23 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1Y0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1Y0 TCGA-D8-A1Y0-01A TCGA-D8-A1Y0-01A-11R-A14L-13 71630f8c-5913-410b-8097-3c4374602d23 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.12.1.0/6042316072_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.12.1.0 124 07-NOV-11 04.11.38.706000000 PM TCGA-D8-A1Y1 TCGA-D8-A1Y1-01A TCGA-D8-A1Y1-01A-21D-A14N-05 c8c0013c-67cc-4d5b-888a-c0f0251ccb29 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.12.1.0/jhu-usc.edu_BRCA.HumanMethylation450.12.lvl-2.TCGA-D8-A1Y1-01A-21D-A14N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.12.1.0 124 07-NOV-11 04.55.54.995000000 PM TCGA-D8-A1Y1 TCGA-D8-A1Y1-01A TCGA-D8-A1Y1-01A-21D-A14N-05 c8c0013c-67cc-4d5b-888a-c0f0251ccb29 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.12.1.0/jhu-usc.edu_BRCA.HumanMethylation450.12.lvl-3.TCGA-D8-A1Y1-01A-21D-A14N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.12.1.0 124 07-NOV-11 05.36.33.757000000 PM TCGA-D8-A1Y1 TCGA-D8-A1Y1-01A TCGA-D8-A1Y1-01A-21R-A14L-13 bd344a03-121f-4417-a5e0-ed01c92167b4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1Y1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1Y1 TCGA-D8-A1Y1-01A TCGA-D8-A1Y1-01A-21R-A14L-13 bd344a03-121f-4417-a5e0-ed01c92167b4 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A1Y1-01A-21R-A14L-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 124 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A1Y1 TCGA-D8-A1Y1-01A TCGA-D8-A1Y1-01A-21R-A14L-13 bd344a03-121f-4417-a5e0-ed01c92167b4 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A1Y1-01A-21R-A14L-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 124 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A1Y1 TCGA-D8-A1Y1-01A TCGA-D8-A1Y1-01A-21R-A14M-07 2d49cea0-0d08-4203-afa0-a1252cbf739a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1Y1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1Y1 TCGA-D8-A1Y1-01A TCGA-D8-A1Y1-01A-21R-A14M-07 2d49cea0-0d08-4203-afa0-a1252cbf739a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_511318.TCGA-D8-A1Y1-01A-21R-A14M-07.110909_UNC10-SN254_0276_BB0A28ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 124 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1Y1 TCGA-D8-A1Y1-01A TCGA-D8-A1Y1-01A-21R-A14M-07 2d49cea0-0d08-4203-afa0-a1252cbf739a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_511329.TCGA-D8-A1Y1-01A-21R-A14M-07.110909_UNC10-SN254_0276_BB0A28ABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 124 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1Y1 TCGA-D8-A1Y1-01A TCGA-D8-A1Y1-01A-21R-A14M-07 2d49cea0-0d08-4203-afa0-a1252cbf739a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_511503.TCGA-D8-A1Y1-01A-21R-A14M-07.110909_UNC10-SN254_0276_BB0A28ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 124 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1Y1 TCGA-D8-A1Y1-01A TCGA-D8-A1Y1-01A-21W-A16I-09 84813a8b-8631-4727-a2cb-07f39f430a88 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1Y1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1Y1 TCGA-D8-A1Y1-10A TCGA-D8-A1Y1-10A-01D-A14I-02 481a45be-d719-4999-ad1b-2c4996a69693 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1Y1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1Y1 TCGA-D8-A1Y1-10A TCGA-D8-A1Y1-10A-01D-A14J-01 00a42020-55cb-4491-819c-e7a3258887c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1Y1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_D06_780834.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_D06_780834.ismpolish.data.txt'. TCGA-D8-A1Y1 TCGA-D8-A1Y1-10A TCGA-D8-A1Y1-10A-01D-A14J-01 00a42020-55cb-4491-819c-e7a3258887c1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_D06_780834.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0 124 07-DEC-11 11.20.29.794000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_D06_780834.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_D06_780834.ismpolish.data.txt'. TCGA-D8-A1Y1 TCGA-D8-A1Y1-10A TCGA-D8-A1Y1-10A-01D-A14J-01 00a42020-55cb-4491-819c-e7a3258887c1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_D06_780834.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_D06_780834.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_D06_780834.ismpolish.data.txt'. TCGA-D8-A1Y1 TCGA-D8-A1Y1-10A TCGA-D8-A1Y1-10A-01D-A14K-09 0400d779-78d9-4645-add6-2a9f94d55e1c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1Y1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1Y1 TCGA-D8-A1Y1-10A TCGA-D8-A1Y1-10A-01W-A16I-09 ad458c99-88b0-4ba6-bac6-914876544fba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1Y1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-D8-A1Y2 TCGA-D8-A1Y2-01A TCGA-D8-A1Y2-01A-11D-A158-02 a2e6a533-40d3-4403-b44f-0511190be930 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1Y2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-D8-A1Y2 TCGA-D8-A1Y2-01A TCGA-D8-A1Y2-01A-11D-A159-09 9dbf62eb-0de7-4410-b44b-fdf59026d8e6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1Y2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-D8-A1Y2 TCGA-D8-A1Y2-01A TCGA-D8-A1Y2-01A-11D-A160-01 cbe5aea9-00bc-40c4-9e9d-bbf285a2b8df Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1Y2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-D8-A1Y2 TCGA-D8-A1Y2-01A TCGA-D8-A1Y2-01A-11D-A160-01 cbe5aea9-00bc-40c4-9e9d-bbf285a2b8df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H05_787626.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-D8-A1Y2 TCGA-D8-A1Y2-01A TCGA-D8-A1Y2-01A-11D-A160-01 cbe5aea9-00bc-40c4-9e9d-bbf285a2b8df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H05_787626.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-D8-A1Y2 TCGA-D8-A1Y2-01A TCGA-D8-A1Y2-01A-11D-A160-01 cbe5aea9-00bc-40c4-9e9d-bbf285a2b8df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H05_787626.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-D8-A1Y2 TCGA-D8-A1Y2-01A TCGA-D8-A1Y2-01A-11D-A160-01 cbe5aea9-00bc-40c4-9e9d-bbf285a2b8df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H05_787626.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-D8-A1Y2 TCGA-D8-A1Y2-01A TCGA-D8-A1Y2-01A-11D-A160-01 cbe5aea9-00bc-40c4-9e9d-bbf285a2b8df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H05_787626.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-D8-A1Y2 TCGA-D8-A1Y2-01A TCGA-D8-A1Y2-01A-11D-A160-01 cbe5aea9-00bc-40c4-9e9d-bbf285a2b8df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H05_787626.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-D8-A1Y2 TCGA-D8-A1Y2-01A TCGA-D8-A1Y2-01A-11D-A160-01 cbe5aea9-00bc-40c4-9e9d-bbf285a2b8df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H05_787626.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-D8-A1Y2 TCGA-D8-A1Y2-01A TCGA-D8-A1Y2-01A-11D-A160-01 cbe5aea9-00bc-40c4-9e9d-bbf285a2b8df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H05_787626.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0 136 07-DEC-11 01.00.02.682000000 PM TCGA-D8-A1Y2 TCGA-D8-A1Y2-01A TCGA-D8-A1Y2-01A-11D-A161-05 779346d6-3de5-4aaa-8079-9535659210dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1Y2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-D8-A1Y2 TCGA-D8-A1Y2-01A TCGA-D8-A1Y2-01A-11D-A161-05 779346d6-3de5-4aaa-8079-9535659210dc DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0/6042324011_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0 136 07-NOV-11 04.13.40.962000000 PM TCGA-D8-A1Y2 TCGA-D8-A1Y2-01A TCGA-D8-A1Y2-01A-11D-A161-05 779346d6-3de5-4aaa-8079-9535659210dc DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0/6042324011_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0 136 07-NOV-11 04.13.40.962000000 PM TCGA-D8-A1Y2 TCGA-D8-A1Y2-01A TCGA-D8-A1Y2-01A-11D-A161-05 779346d6-3de5-4aaa-8079-9535659210dc DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-2.TCGA-D8-A1Y2-01A-11D-A161-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0 136 07-NOV-11 04.57.19.359000000 PM TCGA-D8-A1Y2 TCGA-D8-A1Y2-01A TCGA-D8-A1Y2-01A-11D-A161-05 779346d6-3de5-4aaa-8079-9535659210dc DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-3.TCGA-D8-A1Y2-01A-11D-A161-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0 136 07-NOV-11 05.36.48.633000000 PM TCGA-D8-A1Y2 TCGA-D8-A1Y2-01A TCGA-D8-A1Y2-01A-11R-A156-13 5de11183-58e8-48ed-a7db-b3c4ef6e1db1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1Y2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-D8-A1Y2 TCGA-D8-A1Y2-01A TCGA-D8-A1Y2-01A-11R-A156-13 5de11183-58e8-48ed-a7db-b3c4ef6e1db1 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A1Y2-01A-11R-A156-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A1Y2 TCGA-D8-A1Y2-01A TCGA-D8-A1Y2-01A-11R-A156-13 5de11183-58e8-48ed-a7db-b3c4ef6e1db1 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_596151.TCGA-D8-A1Y2-01A-11R-A157-07.110916_UNC16-SN851_0087_AD0DE7ABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1Y2 TCGA-D8-A1Y2-01A TCGA-D8-A1Y2-01A-11R-A157-07 4d184421-3a3d-499a-bdb5-230f45e6d16f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_596153.TCGA-D8-A1Y2-01A-11R-A157-07.110916_UNC16-SN851_0087_AD0DE7ABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1Y2 TCGA-D8-A1Y2-01A TCGA-D8-A1Y2-01A-11R-A157-07 4d184421-3a3d-499a-bdb5-230f45e6d16f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_596303.TCGA-D8-A1Y2-01A-11R-A157-07.110916_UNC16-SN851_0087_AD0DE7ABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A1Y2 TCGA-D8-A1Y2-01A TCGA-D8-A1Y2-01A-11W-A16L-09 5aae915a-4dea-42eb-a1d8-9ae081df43fb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1Y2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-D8-A1Y2 TCGA-D8-A1Y2-10A TCGA-D8-A1Y2-10A-01D-A158-02 00cb48ab-1928-49b9-996f-427551490222 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1Y2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-D8-A1Y2 TCGA-D8-A1Y2-10A TCGA-D8-A1Y2-10A-01D-A159-09 0d5f1609-7930-4549-8c76-395e0700dc4b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1Y2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-D8-A1Y2 TCGA-D8-A1Y2-10A TCGA-D8-A1Y2-10A-01D-A160-01 0ea9c7fa-7b69-4d34-ad21-e060aadad284 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1Y2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-D8-A1Y2 TCGA-D8-A1Y2-10A TCGA-D8-A1Y2-10A-01D-A160-01 0ea9c7fa-7b69-4d34-ad21-e060aadad284 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B03_787522.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-D8-A1Y2 TCGA-D8-A1Y2-10A TCGA-D8-A1Y2-10A-01D-A160-01 0ea9c7fa-7b69-4d34-ad21-e060aadad284 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-D8-A1Y3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-D8-A1Y3 TCGA-D8-A1Y3-01A TCGA-D8-A1Y3-01A-11D-A160-01 0da7828c-fa60-464e-bf84-43de16003663 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H02_787620.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-D8-A1Y3 TCGA-D8-A1Y3-01A TCGA-D8-A1Y3-01A-11D-A160-01 0da7828c-fa60-464e-bf84-43de16003663 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27E TCGA-D8-A27E-01A TCGA-D8-A27E-01A-11D-A16C-01 62b607cb-63e1-4619-993e-94a5d696b1a7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27E TCGA-D8-A27E-01A TCGA-D8-A27E-01A-11D-A16C-01 62b607cb-63e1-4619-993e-94a5d696b1a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_C03_799926.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-D8-A27E TCGA-D8-A27E-01A TCGA-D8-A27E-01A-11D-A16C-01 62b607cb-63e1-4619-993e-94a5d696b1a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_C03_799926.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27E TCGA-D8-A27E-01A TCGA-D8-A27E-01A-11D-A16C-01 62b607cb-63e1-4619-993e-94a5d696b1a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_C03_799926.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27E TCGA-D8-A27E-01A TCGA-D8-A27E-01A-11D-A16C-01 62b607cb-63e1-4619-993e-94a5d696b1a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_C03_799926.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27E TCGA-D8-A27E-01A TCGA-D8-A27E-01A-11D-A16C-01 62b607cb-63e1-4619-993e-94a5d696b1a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_C03_799926.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27E TCGA-D8-A27E-01A TCGA-D8-A27E-01A-11D-A16C-01 62b607cb-63e1-4619-993e-94a5d696b1a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_C03_799926.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27E TCGA-D8-A27E-01A TCGA-D8-A27E-01A-11D-A16C-01 62b607cb-63e1-4619-993e-94a5d696b1a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_C03_799926.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27E TCGA-D8-A27E-01A TCGA-D8-A27E-01A-11D-A16C-01 62b607cb-63e1-4619-993e-94a5d696b1a7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_C03_799926.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-D8-A27E TCGA-D8-A27E-01A TCGA-D8-A27E-01A-11D-A16D-09 eab47cbb-eab0-4dd6-9cd0-f2700e5b6227 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27E TCGA-D8-A27E-01A TCGA-D8-A27E-01A-11D-A16G-05 c0bbdb5f-c477-4a78-9e0b-2c25e8d66662 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27E TCGA-D8-A27E-01A TCGA-D8-A27E-01A-11D-A16G-05 c0bbdb5f-c477-4a78-9e0b-2c25e8d66662 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009060_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-D8-A27E TCGA-D8-A27E-01A TCGA-D8-A27E-01A-11D-A16G-05 c0bbdb5f-c477-4a78-9e0b-2c25e8d66662 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009060_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-D8-A27E TCGA-D8-A27E-01A TCGA-D8-A27E-01A-11D-A16G-05 c0bbdb5f-c477-4a78-9e0b-2c25e8d66662 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-2.TCGA-D8-A27E-01A-11D-A16G-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0 147 07-NOV-11 05.10.40.874000000 PM TCGA-D8-A27E TCGA-D8-A27E-01A TCGA-D8-A27E-01A-11D-A16G-05 c0bbdb5f-c477-4a78-9e0b-2c25e8d66662 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-3.TCGA-D8-A27E-01A-11D-A16G-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0 147 07-NOV-11 05.48.07.389000000 PM TCGA-D8-A27E TCGA-D8-A27E-01A TCGA-D8-A27E-01A-11R-A16E-13 ec55e055-c69c-4f51-8cc3-7108ed9a3c99 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27E TCGA-D8-A27E-01A TCGA-D8-A27E-01A-11R-A16E-13 ec55e055-c69c-4f51-8cc3-7108ed9a3c99 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A27E-01A-11R-A16E-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A27E TCGA-D8-A27E-01A TCGA-D8-A27E-01A-11R-A16E-13 ec55e055-c69c-4f51-8cc3-7108ed9a3c99 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A27E-01A-11R-A16E-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A27E TCGA-D8-A27E-01A TCGA-D8-A27E-01A-11R-A16F-07 5e32f7e7-6022-4ce2-aa79-4c6671493406 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27E TCGA-D8-A27E-01A TCGA-D8-A27E-01A-11R-A16F-07 5e32f7e7-6022-4ce2-aa79-4c6671493406 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_567986.TCGA-D8-A27E-01A-11R-A16F-07.110926_UNC14-SN744_0172_AB036MABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A27E TCGA-D8-A27E-01A TCGA-D8-A27E-01A-11R-A16F-07 5e32f7e7-6022-4ce2-aa79-4c6671493406 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_568113.TCGA-D8-A27E-01A-11R-A16F-07.110926_UNC14-SN744_0172_AB036MABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A27E TCGA-D8-A27E-01A TCGA-D8-A27E-01A-11R-A16F-07 5e32f7e7-6022-4ce2-aa79-4c6671493406 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_568175.TCGA-D8-A27E-01A-11R-A16F-07.110926_UNC14-SN744_0172_AB036MABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A27E TCGA-D8-A27E-01A TCGA-D8-A27E-01A-11W-A189-09 90cdd542-2f4d-4894-9e00-bc5056afef6a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27E TCGA-D8-A27E-10A TCGA-D8-A27E-10A-01D-A16B-02 3f560664-d6e7-4710-9327-c5548afd37c5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27E TCGA-D8-A27E-10A TCGA-D8-A27E-10A-01D-A16C-01 8ff00a87-b2bd-4ff3-9713-bce1386c778c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E05_799890.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E05_799890.ismpolish.data.txt'. TCGA-D8-A27E TCGA-D8-A27E-10A TCGA-D8-A27E-10A-01D-A16C-01 8ff00a87-b2bd-4ff3-9713-bce1386c778c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E05_799890.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E05_799890.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E05_799890.ismpolish.data.txt'. TCGA-D8-A27E TCGA-D8-A27E-10A TCGA-D8-A27E-10A-01D-A16C-01 8ff00a87-b2bd-4ff3-9713-bce1386c778c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E05_799890.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E05_799890.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E05_799890.ismpolish.data.txt'. TCGA-D8-A27E TCGA-D8-A27E-10A TCGA-D8-A27E-10A-01D-A16D-09 bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27E TCGA-D8-A27E-10A TCGA-D8-A27E-10A-01W-A189-09 d9a7e268-996b-4366-ae0b-5b8eff9dfb51 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27F TCGA-D8-A27F-01A TCGA-D8-A27F-01A-11D-A16B-02 1ea12c9a-57c1-49b8-b649-b6220bf7f412 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27F TCGA-D8-A27F-01A TCGA-D8-A27F-01A-11D-A16C-01 96972bfb-01a7-4731-aca8-43dc346feb10 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27F TCGA-D8-A27F-01A TCGA-D8-A27F-01A-11D-A16C-01 96972bfb-01a7-4731-aca8-43dc346feb10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G07_799918.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-D8-A27F TCGA-D8-A27F-01A TCGA-D8-A27F-01A-11D-A16C-01 96972bfb-01a7-4731-aca8-43dc346feb10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G07_799918.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27F TCGA-D8-A27F-01A TCGA-D8-A27F-01A-11D-A16C-01 96972bfb-01a7-4731-aca8-43dc346feb10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G07_799918.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27F TCGA-D8-A27F-01A TCGA-D8-A27F-01A-11D-A16C-01 96972bfb-01a7-4731-aca8-43dc346feb10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G07_799918.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27F TCGA-D8-A27F-01A TCGA-D8-A27F-01A-11D-A16C-01 96972bfb-01a7-4731-aca8-43dc346feb10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G07_799918.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27F TCGA-D8-A27F-01A TCGA-D8-A27F-01A-11D-A16C-01 96972bfb-01a7-4731-aca8-43dc346feb10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G07_799918.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27F TCGA-D8-A27F-01A TCGA-D8-A27F-01A-11D-A16C-01 96972bfb-01a7-4731-aca8-43dc346feb10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G07_799918.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27F TCGA-D8-A27F-01A TCGA-D8-A27F-01A-11D-A16C-01 96972bfb-01a7-4731-aca8-43dc346feb10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G07_799918.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-D8-A27F TCGA-D8-A27F-01A TCGA-D8-A27F-01A-11D-A16D-09 fc6d77a9-121b-48ab-a899-713c3d1319a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27F TCGA-D8-A27F-01A TCGA-D8-A27F-01A-11D-A16G-05 b806edec-50aa-4899-9fe2-8da971d72f55 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27F TCGA-D8-A27F-01A TCGA-D8-A27F-01A-11D-A16G-05 b806edec-50aa-4899-9fe2-8da971d72f55 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009066_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-D8-A27F TCGA-D8-A27F-01A TCGA-D8-A27F-01A-11D-A16G-05 b806edec-50aa-4899-9fe2-8da971d72f55 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009066_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-D8-A27F TCGA-D8-A27F-01A TCGA-D8-A27F-01A-11D-A16G-05 b806edec-50aa-4899-9fe2-8da971d72f55 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-2.TCGA-D8-A27F-01A-11D-A16G-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0 147 07-NOV-11 05.10.40.874000000 PM TCGA-D8-A27F TCGA-D8-A27F-01A TCGA-D8-A27F-01A-11D-A16G-05 b806edec-50aa-4899-9fe2-8da971d72f55 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-3.TCGA-D8-A27F-01A-11D-A16G-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0 147 07-NOV-11 05.48.07.389000000 PM TCGA-D8-A27F TCGA-D8-A27F-01A TCGA-D8-A27F-01A-11R-A16E-13 45f803c1-d7f8-4776-8fcb-85278f68071d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27F TCGA-D8-A27F-01A TCGA-D8-A27F-01A-11R-A16E-13 45f803c1-d7f8-4776-8fcb-85278f68071d miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A27F-01A-11R-A16E-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A27F TCGA-D8-A27F-01A TCGA-D8-A27F-01A-11R-A16E-13 45f803c1-d7f8-4776-8fcb-85278f68071d miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A27F-01A-11R-A16E-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A27F TCGA-D8-A27F-01A TCGA-D8-A27F-01A-11R-A16F-07 0a69935d-9552-4792-9b2e-1a630114691e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27F TCGA-D8-A27F-01A TCGA-D8-A27F-01A-11R-A16F-07 0a69935d-9552-4792-9b2e-1a630114691e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_567976.TCGA-D8-A27F-01A-11R-A16F-07.110926_UNC14-SN744_0172_AB036MABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A27F TCGA-D8-A27F-01A TCGA-D8-A27F-01A-11R-A16F-07 0a69935d-9552-4792-9b2e-1a630114691e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_567981.TCGA-D8-A27F-01A-11R-A16F-07.110926_UNC14-SN744_0172_AB036MABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A27F TCGA-D8-A27F-01A TCGA-D8-A27F-01A-11R-A16F-07 0a69935d-9552-4792-9b2e-1a630114691e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_568018.TCGA-D8-A27F-01A-11R-A16F-07.110926_UNC14-SN744_0172_AB036MABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A27F TCGA-D8-A27F-01A TCGA-D8-A27F-01A-11W-A189-09 1e79ef86-e752-4f50-85f8-8d0e2ad97fb5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27F TCGA-D8-A27F-10A TCGA-D8-A27F-10A-01D-A16B-02 369a03b6-c0ca-4791-88a0-fd9126271827 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27F TCGA-D8-A27F-10A TCGA-D8-A27F-10A-01D-A16C-01 3c06a76c-dfca-4106-920d-026be5af1ec8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27F TCGA-D8-A27F-10A TCGA-D8-A27F-10A-01D-A16C-01 3c06a76c-dfca-4106-920d-026be5af1ec8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G09_799866.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-D8-A27F TCGA-D8-A27F-10A TCGA-D8-A27F-10A-01D-A16C-01 3c06a76c-dfca-4106-920d-026be5af1ec8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G09_799866.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27F TCGA-D8-A27F-10A TCGA-D8-A27F-10A-01D-A16C-01 3c06a76c-dfca-4106-920d-026be5af1ec8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G09_799866.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27F TCGA-D8-A27F-10A TCGA-D8-A27F-10A-01D-A16C-01 3c06a76c-dfca-4106-920d-026be5af1ec8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G09_799866.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27F TCGA-D8-A27F-10A TCGA-D8-A27F-10A-01D-A16C-01 3c06a76c-dfca-4106-920d-026be5af1ec8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G09_799866.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27F TCGA-D8-A27F-10A TCGA-D8-A27F-10A-01D-A16C-01 3c06a76c-dfca-4106-920d-026be5af1ec8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G09_799866.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27F TCGA-D8-A27F-10A TCGA-D8-A27F-10A-01D-A16C-01 3c06a76c-dfca-4106-920d-026be5af1ec8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G09_799866.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27F TCGA-D8-A27F-10A TCGA-D8-A27F-10A-01D-A16C-01 3c06a76c-dfca-4106-920d-026be5af1ec8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G09_799866.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-D8-A27F TCGA-D8-A27F-10A TCGA-D8-A27F-10A-01D-A16D-09 a070d518-b1fe-4505-86b5-fc08201a4b61 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27F TCGA-D8-A27F-10A TCGA-D8-A27F-10A-01W-A189-09 0d53db2f-058e-4ebc-8a19-88c97be7f9a7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27G TCGA-D8-A27G-01A TCGA-D8-A27G-01A-11D-A16B-02 3eb29680-a53a-4a3b-8025-d32693bac834 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27G TCGA-D8-A27G-01A TCGA-D8-A27G-01A-11D-A16C-01 38f3fe40-a4aa-4f30-94a1-91e54c11c99b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27G TCGA-D8-A27G-01A TCGA-D8-A27G-01A-11D-A16C-01 38f3fe40-a4aa-4f30-94a1-91e54c11c99b SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27G TCGA-D8-A27G-10A TCGA-D8-A27G-10A-01D-A16C-01 b8378d5b-058f-4cf3-96c2-86bd32afd3ce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27G TCGA-D8-A27G-10A TCGA-D8-A27G-10A-01D-A16C-01 b8378d5b-058f-4cf3-96c2-86bd32afd3ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B01_800000.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-D8-A27G TCGA-D8-A27G-10A TCGA-D8-A27G-10A-01D-A16C-01 b8378d5b-058f-4cf3-96c2-86bd32afd3ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B01_800000.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27G TCGA-D8-A27G-10A TCGA-D8-A27G-10A-01D-A16C-01 b8378d5b-058f-4cf3-96c2-86bd32afd3ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B01_800000.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27G TCGA-D8-A27G-10A TCGA-D8-A27G-10A-01D-A16C-01 b8378d5b-058f-4cf3-96c2-86bd32afd3ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B01_800000.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27G TCGA-D8-A27G-10A TCGA-D8-A27G-10A-01D-A16C-01 b8378d5b-058f-4cf3-96c2-86bd32afd3ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B01_800000.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27G TCGA-D8-A27G-10A TCGA-D8-A27G-10A-01D-A16C-01 b8378d5b-058f-4cf3-96c2-86bd32afd3ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B01_800000.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27G TCGA-D8-A27G-10A TCGA-D8-A27G-10A-01D-A16C-01 b8378d5b-058f-4cf3-96c2-86bd32afd3ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B01_800000.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27G TCGA-D8-A27G-10A TCGA-D8-A27G-10A-01D-A16C-01 b8378d5b-058f-4cf3-96c2-86bd32afd3ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B01_800000.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-D8-A27G TCGA-D8-A27G-10A TCGA-D8-A27G-10A-01D-A16D-09 4e47a193-cf64-45ab-afb0-0167661972a2 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_C05_799820.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27H TCGA-D8-A27H-01A TCGA-D8-A27H-01A-11D-A16C-01 e6674bdf-bebe-4c44-a6c1-36ce0ee121f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_C05_799820.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-D8-A27H TCGA-D8-A27H-01A TCGA-D8-A27H-01A-11D-A16D-09 78e51220-c9f8-44b2-bc1c-b34a56af3b54 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-2.TCGA-D8-A27H-01A-11D-A16G-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0 147 07-NOV-11 05.10.40.874000000 PM TCGA-D8-A27H TCGA-D8-A27H-01A TCGA-D8-A27H-01A-11D-A16G-05 4e0b5c97-f87f-4078-acd1-740d8c074c4e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-3.TCGA-D8-A27H-01A-11D-A16G-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0 147 07-NOV-11 05.48.07.389000000 PM TCGA-D8-A27H TCGA-D8-A27H-01A TCGA-D8-A27H-01A-11R-A16E-13 5b0d255d-3157-4815-be16-974772789565 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27H TCGA-D8-A27H-01A TCGA-D8-A27H-01A-11R-A16E-13 5b0d255d-3157-4815-be16-974772789565 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A27H-01A-11R-A16E-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A27H TCGA-D8-A27H-01A TCGA-D8-A27H-01A-11R-A16E-13 5b0d255d-3157-4815-be16-974772789565 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27H TCGA-D8-A27H-10A TCGA-D8-A27H-10A-01D-A16C-01 d700c0b3-0de8-4fb9-97d7-2f520bbae9d7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27H TCGA-D8-A27H-10A TCGA-D8-A27H-10A-01D-A16C-01 d700c0b3-0de8-4fb9-97d7-2f520bbae9d7 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B07_799936.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-D8-A27K TCGA-D8-A27K-10A TCGA-D8-A27K-10A-01D-A16D-09 a25f38d9-48a6-4b15-a83b-d1a963324e96 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27K TCGA-D8-A27K-10A TCGA-D8-A27K-10A-01W-A189-09 bf703fe7-6dca-402a-965c-e6c5e0516484 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B08_799956.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27L TCGA-D8-A27L-01A TCGA-D8-A27L-01A-11D-A16C-01 2c270f48-b696-471a-9804-3d7427b0ba73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B08_799956.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27L TCGA-D8-A27L-01A TCGA-D8-A27L-01A-11D-A16C-01 2c270f48-b696-471a-9804-3d7427b0ba73 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27L TCGA-D8-A27L-01A TCGA-D8-A27L-01A-11D-A16G-05 c1f98334-0224-4ac6-b5cd-0c2ab4cc5b5f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009066_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-D8-A27L TCGA-D8-A27L-01A TCGA-D8-A27L-01A-11D-A16G-05 c1f98334-0224-4ac6-b5cd-0c2ab4cc5b5f DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27N TCGA-D8-A27N-01A TCGA-D8-A27N-01A-11D-A16G-05 c860ccc1-dc79-4ea7-9c9c-a8ba618e9f0d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27N TCGA-D8-A27N-01A TCGA-D8-A27N-01A-11D-A16G-05 c860ccc1-dc79-4ea7-9c9c-a8ba618e9f0d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009060_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-D8-A27N TCGA-D8-A27N-01A TCGA-D8-A27N-01A-11D-A16G-05 c860ccc1-dc79-4ea7-9c9c-a8ba618e9f0d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009060_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-D8-A27N TCGA-D8-A27N-01A TCGA-D8-A27N-01A-11D-A16G-05 c860ccc1-dc79-4ea7-9c9c-a8ba618e9f0d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-2.TCGA-D8-A27N-01A-11D-A16G-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0 147 07-NOV-11 05.10.40.874000000 PM TCGA-D8-A27N TCGA-D8-A27N-01A TCGA-D8-A27N-01A-11D-A16G-05 c860ccc1-dc79-4ea7-9c9c-a8ba618e9f0d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-3.TCGA-D8-A27N-01A-11D-A16G-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0 147 07-NOV-11 05.48.07.389000000 PM TCGA-D8-A27N TCGA-D8-A27N-01A TCGA-D8-A27N-01A-11R-A16E-13 8a2246bd-f3f2-444c-a6b9-b94fc8f0140c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27N TCGA-D8-A27N-01A TCGA-D8-A27N-01A-11R-A16E-13 8a2246bd-f3f2-444c-a6b9-b94fc8f0140c miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A27N-01A-11R-A16E-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A27N TCGA-D8-A27N-01A TCGA-D8-A27N-01A-11R-A16E-13 8a2246bd-f3f2-444c-a6b9-b94fc8f0140c miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_556076.TCGA-D8-A27N-01A-11R-A16F-07.111005_UNC12-SN629_0147_AB01MFABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A27N TCGA-D8-A27N-01A TCGA-D8-A27N-01A-11R-A16F-07 50808f98-d10b-4190-aff7-428f56abb0f9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_556077.TCGA-D8-A27N-01A-11R-A16F-07.111005_UNC12-SN629_0147_AB01MFABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A27N TCGA-D8-A27N-01A TCGA-D8-A27N-01A-11R-A16F-07 50808f98-d10b-4190-aff7-428f56abb0f9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_556202.TCGA-D8-A27N-01A-11R-A16F-07.111005_UNC12-SN629_0147_AB01MFABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A27N TCGA-D8-A27N-01A TCGA-D8-A27N-01A-11W-A189-09 91b08d7e-db36-4cfe-8cea-3942bae20c5c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27N TCGA-D8-A27N-10A TCGA-D8-A27N-10A-01D-A16B-02 9e8fb703-d6c7-4119-bb1d-542278b68dd8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27N TCGA-D8-A27N-10A TCGA-D8-A27N-10A-01D-A16C-01 4b8dacde-44bc-426a-aff6-389c4837a9cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27N TCGA-D8-A27N-10A TCGA-D8-A27N-10A-01D-A16C-01 4b8dacde-44bc-426a-aff6-389c4837a9cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G04_799910.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-D8-A27N TCGA-D8-A27N-10A TCGA-D8-A27N-10A-01D-A16C-01 4b8dacde-44bc-426a-aff6-389c4837a9cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G04_799910.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27N TCGA-D8-A27N-10A TCGA-D8-A27N-10A-01D-A16C-01 4b8dacde-44bc-426a-aff6-389c4837a9cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G04_799910.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27N TCGA-D8-A27N-10A TCGA-D8-A27N-10A-01D-A16C-01 4b8dacde-44bc-426a-aff6-389c4837a9cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G04_799910.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27N TCGA-D8-A27N-10A TCGA-D8-A27N-10A-01D-A16C-01 4b8dacde-44bc-426a-aff6-389c4837a9cb SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G04_799910.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27N TCGA-D8-A27N-10A TCGA-D8-A27N-10A-01D-A16C-01 4b8dacde-44bc-426a-aff6-389c4837a9cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G04_799910.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-D8-A27N TCGA-D8-A27N-10A TCGA-D8-A27N-10A-01D-A16D-09 de420622-f742-4781-873a-e9faffc94dd3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27N TCGA-D8-A27N-10A TCGA-D8-A27N-10A-01W-A189-09 d048af37-b221-4617-bde6-a80196c9388b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27P TCGA-D8-A27P-01A TCGA-D8-A27P-01A-11D-A16B-02 89589460-2021-41ed-a19b-22cf6ffc0d39 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27P TCGA-D8-A27P-01A TCGA-D8-A27P-01A-11D-A16C-01 2b37e86a-a7a9-445f-afec-7393f19360ff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27P TCGA-D8-A27P-01A TCGA-D8-A27P-01A-11D-A16C-01 2b37e86a-a7a9-445f-afec-7393f19360ff SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27P TCGA-D8-A27P-01A TCGA-D8-A27P-01A-11R-A16E-13 e1d66e39-69de-464d-8a49-c0c02ec87398 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A27P-01A-11R-A16E-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A27P TCGA-D8-A27P-01A TCGA-D8-A27P-01A-11R-A16E-13 e1d66e39-69de-464d-8a49-c0c02ec87398 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27P TCGA-D8-A27P-10A TCGA-D8-A27P-10A-01D-A16C-01 c0931370-86e8-4145-985f-02a4e72f171b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27P TCGA-D8-A27P-10A TCGA-D8-A27P-10A-01D-A16C-01 c0931370-86e8-4145-985f-02a4e72f171b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E06_799904.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-D8-A27P TCGA-D8-A27P-10A TCGA-D8-A27P-10A-01D-A16C-01 c0931370-86e8-4145-985f-02a4e72f171b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E06_799904.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27P TCGA-D8-A27P-10A TCGA-D8-A27P-10A-01D-A16C-01 c0931370-86e8-4145-985f-02a4e72f171b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E06_799904.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27P TCGA-D8-A27P-10A TCGA-D8-A27P-10A-01D-A16C-01 c0931370-86e8-4145-985f-02a4e72f171b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E06_799904.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27P TCGA-D8-A27P-10A TCGA-D8-A27P-10A-01D-A16C-01 c0931370-86e8-4145-985f-02a4e72f171b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E06_799904.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27P TCGA-D8-A27P-10A TCGA-D8-A27P-10A-01D-A16C-01 c0931370-86e8-4145-985f-02a4e72f171b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E06_799904.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27P TCGA-D8-A27P-10A TCGA-D8-A27P-10A-01D-A16C-01 c0931370-86e8-4145-985f-02a4e72f171b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E06_799904.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27P TCGA-D8-A27P-10A TCGA-D8-A27P-10A-01D-A16C-01 c0931370-86e8-4145-985f-02a4e72f171b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E06_799904.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-D8-A27P TCGA-D8-A27P-10A TCGA-D8-A27P-10A-01D-A16D-09 8278fd29-aaf7-4be5-a235-84073f745cad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27P TCGA-D8-A27P-10A TCGA-D8-A27P-10A-01W-A189-09 adaae201-0154-4583-9c78-77e2b0064904 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27R TCGA-D8-A27R-01A TCGA-D8-A27R-01A-11D-A16B-02 96a28411-286d-422f-bb6e-2d76aefe7f7f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27R TCGA-D8-A27R-01A TCGA-D8-A27R-01A-11D-A16C-01 da7c504e-b884-40e3-8c4b-6c7936a68a5c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27R TCGA-D8-A27R-01A TCGA-D8-A27R-01A-11D-A16C-01 da7c504e-b884-40e3-8c4b-6c7936a68a5c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G08_799834.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-D8-A27R TCGA-D8-A27R-01A TCGA-D8-A27R-01A-11D-A16C-01 da7c504e-b884-40e3-8c4b-6c7936a68a5c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G08_799834.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27R TCGA-D8-A27R-01A TCGA-D8-A27R-01A-11D-A16C-01 da7c504e-b884-40e3-8c4b-6c7936a68a5c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G08_799834.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27R TCGA-D8-A27R-01A TCGA-D8-A27R-01A-11D-A16C-01 da7c504e-b884-40e3-8c4b-6c7936a68a5c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G08_799834.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27R TCGA-D8-A27R-01A TCGA-D8-A27R-01A-11D-A16C-01 da7c504e-b884-40e3-8c4b-6c7936a68a5c SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G08_799834.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27R TCGA-D8-A27R-01A TCGA-D8-A27R-01A-11D-A16C-01 da7c504e-b884-40e3-8c4b-6c7936a68a5c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_G08_799834.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-D8-A27R TCGA-D8-A27R-01A TCGA-D8-A27R-01A-11D-A16D-09 27741c13-8d5f-43b8-8651-caf69acef0e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27R TCGA-D8-A27R-01A TCGA-D8-A27R-01A-11D-A16G-05 c373c2f5-d19a-4018-a840-853df5764331 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27R TCGA-D8-A27R-01A TCGA-D8-A27R-01A-11D-A16G-05 c373c2f5-d19a-4018-a840-853df5764331 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009060_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-D8-A27R TCGA-D8-A27R-01A TCGA-D8-A27R-01A-11D-A16G-05 c373c2f5-d19a-4018-a840-853df5764331 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009060_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-D8-A27R TCGA-D8-A27R-01A TCGA-D8-A27R-01A-11D-A16G-05 c373c2f5-d19a-4018-a840-853df5764331 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-2.TCGA-D8-A27R-01A-11D-A16G-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0 147 07-NOV-11 05.10.40.874000000 PM TCGA-D8-A27R TCGA-D8-A27R-01A TCGA-D8-A27R-01A-11D-A16G-05 c373c2f5-d19a-4018-a840-853df5764331 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-3.TCGA-D8-A27R-01A-11D-A16G-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0 147 07-NOV-11 05.48.07.389000000 PM TCGA-D8-A27R TCGA-D8-A27R-01A TCGA-D8-A27R-01A-11R-A16E-13 158a3c38-2088-477a-850b-c042589a95ea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27R TCGA-D8-A27R-01A TCGA-D8-A27R-01A-11R-A16E-13 158a3c38-2088-477a-850b-c042589a95ea miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A27R-01A-11R-A16E-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A27R TCGA-D8-A27R-01A TCGA-D8-A27R-01A-11R-A16E-13 158a3c38-2088-477a-850b-c042589a95ea miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A27R-01A-11R-A16E-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A27R TCGA-D8-A27R-01A TCGA-D8-A27R-01A-11R-A16F-07 70546486-80a3-452c-8722-1bd7b14d5ac4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27R TCGA-D8-A27R-01A TCGA-D8-A27R-01A-11R-A16F-07 70546486-80a3-452c-8722-1bd7b14d5ac4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_600392.TCGA-D8-A27R-01A-11R-A16F-07.111014_UNC12-SN629_0152_BB00YRABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A27R TCGA-D8-A27R-01A TCGA-D8-A27R-01A-11R-A16F-07 70546486-80a3-452c-8722-1bd7b14d5ac4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_600406.TCGA-D8-A27R-01A-11R-A16F-07.111014_UNC12-SN629_0152_BB00YRABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A27R TCGA-D8-A27R-01A TCGA-D8-A27R-01A-11R-A16F-07 70546486-80a3-452c-8722-1bd7b14d5ac4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_600475.TCGA-D8-A27R-01A-11R-A16F-07.111014_UNC12-SN629_0152_BB00YRABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A27R TCGA-D8-A27R-01A TCGA-D8-A27R-01A-11W-A189-09 5073d375-5c58-4037-9cc2-b0e8f1085be9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27R TCGA-D8-A27R-10A TCGA-D8-A27R-10A-01D-A16B-02 0fe515fb-adf2-40b6-86f3-d667f42a7302 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27R TCGA-D8-A27R-10A TCGA-D8-A27R-10A-01D-A16C-01 b7fd52eb-2e20-4018-8cf7-f9ff221fc474 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27R TCGA-D8-A27R-10A TCGA-D8-A27R-10A-01D-A16C-01 b7fd52eb-2e20-4018-8cf7-f9ff221fc474 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E07_799922.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-D8-A27R TCGA-D8-A27R-10A TCGA-D8-A27R-10A-01D-A16C-01 b7fd52eb-2e20-4018-8cf7-f9ff221fc474 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E07_799922.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27R TCGA-D8-A27R-10A TCGA-D8-A27R-10A-01D-A16C-01 b7fd52eb-2e20-4018-8cf7-f9ff221fc474 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E07_799922.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27R TCGA-D8-A27R-10A TCGA-D8-A27R-10A-01D-A16C-01 b7fd52eb-2e20-4018-8cf7-f9ff221fc474 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E07_799922.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27R TCGA-D8-A27R-10A TCGA-D8-A27R-10A-01D-A16C-01 b7fd52eb-2e20-4018-8cf7-f9ff221fc474 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E07_799922.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27R TCGA-D8-A27R-10A TCGA-D8-A27R-10A-01D-A16C-01 b7fd52eb-2e20-4018-8cf7-f9ff221fc474 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E07_799922.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27R TCGA-D8-A27R-10A TCGA-D8-A27R-10A-01D-A16C-01 b7fd52eb-2e20-4018-8cf7-f9ff221fc474 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27T TCGA-D8-A27T-01A TCGA-D8-A27T-01A-11D-A16C-01 e7e113cc-1203-4bd9-9411-1f8dfacb7968 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27T TCGA-D8-A27T-01A TCGA-D8-A27T-01A-11D-A16C-01 e7e113cc-1203-4bd9-9411-1f8dfacb7968 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E08_799934.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-D8-A27T TCGA-D8-A27T-01A TCGA-D8-A27T-01A-11D-A16C-01 e7e113cc-1203-4bd9-9411-1f8dfacb7968 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E08_799934.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27T TCGA-D8-A27T-01A TCGA-D8-A27T-01A-11D-A16C-01 e7e113cc-1203-4bd9-9411-1f8dfacb7968 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E08_799934.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27T TCGA-D8-A27T-01A TCGA-D8-A27T-01A-11D-A16C-01 e7e113cc-1203-4bd9-9411-1f8dfacb7968 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E08_799934.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27T TCGA-D8-A27T-01A TCGA-D8-A27T-01A-11D-A16C-01 e7e113cc-1203-4bd9-9411-1f8dfacb7968 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27T TCGA-D8-A27T-01A TCGA-D8-A27T-01A-11R-A16E-13 935ac85d-2c88-47cd-8bf9-e46f134226b2 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A27T-01A-11R-A16E-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A27T TCGA-D8-A27T-01A TCGA-D8-A27T-01A-11R-A16E-13 935ac85d-2c88-47cd-8bf9-e46f134226b2 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27T TCGA-D8-A27T-10A TCGA-D8-A27T-10A-01D-A16C-01 004bf993-1126-4c1d-b38f-53ac0ac1db67 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27T TCGA-D8-A27T-10A TCGA-D8-A27T-10A-01D-A16C-01 004bf993-1126-4c1d-b38f-53ac0ac1db67 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B02_799972.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-D8-A27T TCGA-D8-A27T-10A TCGA-D8-A27T-10A-01D-A16C-01 004bf993-1126-4c1d-b38f-53ac0ac1db67 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_B02_799972.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27T TCGA-D8-A27T-10A TCGA-D8-A27T-10A-01D-A16C-01 004bf993-1126-4c1d-b38f-53ac0ac1db67 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27W TCGA-D8-A27W-01A TCGA-D8-A27W-01A-11D-A16C-01 4a98e514-5c43-4d64-a7e6-8a8d59b89f25 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27W TCGA-D8-A27W-01A TCGA-D8-A27W-01A-11D-A16C-01 4a98e514-5c43-4d64-a7e6-8a8d59b89f25 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27W TCGA-D8-A27W-01A TCGA-D8-A27W-01A-11R-A16E-13 0e0591c5-be35-49de-a797-0c3bc8737829 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-D8-A27W-01A-11R-A16E-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-D8-A27W TCGA-D8-A27W-01A TCGA-D8-A27W-01A-11R-A16E-13 0e0591c5-be35-49de-a797-0c3bc8737829 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_600660.TCGA-D8-A27W-01A-11R-A16F-07.111014_UNC12-SN629_0152_BB00YRABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-D8-A27W TCGA-D8-A27W-01A TCGA-D8-A27W-01A-11W-A189-09 7fc7ce87-d53a-4d27-8325-deff79df3ceb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27W TCGA-D8-A27W-10A TCGA-D8-A27W-10A-01D-A16B-02 ec28de92-12b7-411f-a134-468ae470e6e2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27W TCGA-D8-A27W-10A TCGA-D8-A27W-10A-01D-A16C-01 dc542b87-c406-4a38-b712-0ba4f8291c26 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27W TCGA-D8-A27W-10A TCGA-D8-A27W-10A-01D-A16C-01 dc542b87-c406-4a38-b712-0ba4f8291c26 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D11_799818.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-D8-A27W TCGA-D8-A27W-10A TCGA-D8-A27W-10A-01D-A16C-01 dc542b87-c406-4a38-b712-0ba4f8291c26 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D11_799818.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27W TCGA-D8-A27W-10A TCGA-D8-A27W-10A-01D-A16C-01 dc542b87-c406-4a38-b712-0ba4f8291c26 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D11_799818.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27W TCGA-D8-A27W-10A TCGA-D8-A27W-10A-01D-A16C-01 dc542b87-c406-4a38-b712-0ba4f8291c26 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D11_799818.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27W TCGA-D8-A27W-10A TCGA-D8-A27W-10A-01D-A16C-01 dc542b87-c406-4a38-b712-0ba4f8291c26 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D11_799818.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27W TCGA-D8-A27W-10A TCGA-D8-A27W-10A-01D-A16C-01 dc542b87-c406-4a38-b712-0ba4f8291c26 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D11_799818.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27W TCGA-D8-A27W-10A TCGA-D8-A27W-10A-01D-A16C-01 dc542b87-c406-4a38-b712-0ba4f8291c26 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D11_799818.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-D8-A27W TCGA-D8-A27W-10A TCGA-D8-A27W-10A-01D-A16C-01 dc542b87-c406-4a38-b712-0ba4f8291c26 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_D11_799818.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-D8-A27W TCGA-D8-A27W-10A TCGA-D8-A27W-10A-01D-A16D-09 ce2ab463-47c2-4a91-840f-99210850f23d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-D8-A27W TCGA-D8-A27W-10A TCGA-D8-A27W-10A-01W-A189-09 e0eed075-b44b-45be-b14c-a3ba4f64b350 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-D8-A27W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11D-A10K-02 ef4f7b95-f600-42a1-b9dc-f4dc11841318 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A105.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11D-A10L-01 1a387c5a-10d0-4a4b-9e5d-23184f15d70c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A105.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11D-A10L-01 1a387c5a-10d0-4a4b-9e5d-23184f15d70c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H07_734698.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11D-A10L-01 1a387c5a-10d0-4a4b-9e5d-23184f15d70c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H07_734698.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11D-A10L-01 1a387c5a-10d0-4a4b-9e5d-23184f15d70c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H07_734698.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11D-A10L-01 1a387c5a-10d0-4a4b-9e5d-23184f15d70c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H07_734698.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11D-A10L-01 1a387c5a-10d0-4a4b-9e5d-23184f15d70c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H07_734698.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11D-A10L-01 1a387c5a-10d0-4a4b-9e5d-23184f15d70c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H07_734698.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11D-A10L-01 1a387c5a-10d0-4a4b-9e5d-23184f15d70c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H07_734698.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11D-A10L-01 1a387c5a-10d0-4a4b-9e5d-23184f15d70c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H07_734698.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11D-A10M-09 2441f3e0-2016-4313-8c05-486759f5dd0f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A105.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11D-A10M-09 2441f3e0-2016-4313-8c05-486759f5dd0f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11D-A10N-05 3d1c9beb-6518-4f9b-a1ca-05d864eadd01 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A105.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11D-A10N-05 3d1c9beb-6518-4f9b-a1ca-05d864eadd01 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486012_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11D-A10N-05 3d1c9beb-6518-4f9b-a1ca-05d864eadd01 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486012_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11D-A10N-05 3d1c9beb-6518-4f9b-a1ca-05d864eadd01 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-E2-A105-01A-11D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11D-A10N-05 3d1c9beb-6518-4f9b-a1ca-05d864eadd01 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-E2-A105-01A-11D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11R-A10I-13 72aa4bcc-2f15-46dd-994b-7a1d1adf9c12 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A105.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11R-A10I-13 72aa4bcc-2f15-46dd-994b-7a1d1adf9c12 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-E2-A105-01A-11R-A10I-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11R-A10I-13 72aa4bcc-2f15-46dd-994b-7a1d1adf9c12 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-E2-A105-01A-11R-A10I-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11R-A10J-07 b9bb3fb2-5692-4e7b-9353-45db1d58843f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A105.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11R-A10J-07 b9bb3fb2-5692-4e7b-9353-45db1d58843f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012723_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11R-A10J-07 b9bb3fb2-5692-4e7b-9353-45db1d58843f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012723_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11R-A10J-07 b9bb3fb2-5692-4e7b-9353-45db1d58843f Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012723_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11R-A10J-07 b9bb3fb2-5692-4e7b-9353-45db1d58843f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439505.TCGA-E2-A105-01A-11R-A10J-07.110517_UNC13-SN749_0065_BC02LHABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11R-A10J-07 b9bb3fb2-5692-4e7b-9353-45db1d58843f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439510.TCGA-E2-A105-01A-11R-A10J-07.110517_UNC13-SN749_0065_BC02LHABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11R-A10J-07 b9bb3fb2-5692-4e7b-9353-45db1d58843f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439564.TCGA-E2-A105-01A-11R-A10J-07.110517_UNC13-SN749_0065_BC02LHABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A105 TCGA-E2-A105-01A TCGA-E2-A105-01A-11W-A124-09 d5677e31-86a6-43d6-a7ae-72a214bd7c04 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A105.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A105 TCGA-E2-A105-10A TCGA-E2-A105-10A-01D-A10K-02 a20f6993-7178-43a0-960c-f219ff48bc27 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A105.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A105 TCGA-E2-A105-10A TCGA-E2-A105-10A-01D-A10L-01 89aa996f-ca34-4599-b170-3f730ca87f50 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A105.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A105 TCGA-E2-A105-10A TCGA-E2-A105-10A-01D-A10L-01 89aa996f-ca34-4599-b170-3f730ca87f50 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B01_734796.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-E2-A105 TCGA-E2-A105-10A TCGA-E2-A105-10A-01D-A10L-01 89aa996f-ca34-4599-b170-3f730ca87f50 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B01_734796.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A105 TCGA-E2-A105-10A TCGA-E2-A105-10A-01D-A10L-01 89aa996f-ca34-4599-b170-3f730ca87f50 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B01_734796.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A105 TCGA-E2-A105-10A TCGA-E2-A105-10A-01D-A10L-01 89aa996f-ca34-4599-b170-3f730ca87f50 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B01_734796.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A105 TCGA-E2-A105-10A TCGA-E2-A105-10A-01D-A10L-01 89aa996f-ca34-4599-b170-3f730ca87f50 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B01_734796.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A105 TCGA-E2-A105-10A TCGA-E2-A105-10A-01D-A10L-01 89aa996f-ca34-4599-b170-3f730ca87f50 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B01_734796.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A105 TCGA-E2-A105-10A TCGA-E2-A105-10A-01D-A10L-01 89aa996f-ca34-4599-b170-3f730ca87f50 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B01_734796.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A105 TCGA-E2-A105-10A TCGA-E2-A105-10A-01D-A10L-01 89aa996f-ca34-4599-b170-3f730ca87f50 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B01_734796.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-E2-A105 TCGA-E2-A105-10A TCGA-E2-A105-10A-01D-A10M-09 5d595e01-bc5f-4480-8729-3b2806bda80a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A105.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A105 TCGA-E2-A105-10A TCGA-E2-A105-10A-01D-A10M-09 5d595e01-bc5f-4480-8729-3b2806bda80a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A105 TCGA-E2-A105-10A TCGA-E2-A105-10A-01W-A124-09 540f9c6e-3cf8-457e-a626-d4f70beac429 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A105.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A106 TCGA-E2-A106-01A TCGA-E2-A106-01A-11D-A10K-02 36e1b3e3-a5be-4f28-9944-6cb1f7b28452 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A106.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A106 TCGA-E2-A106-01A TCGA-E2-A106-01A-11D-A10L-01 f34658c8-7428-4139-af10-c0040c168a02 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A106.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.after_5NN.copynumber.data.txt'. TCGA-E2-A106 TCGA-E2-A106-01A TCGA-E2-A106-01A-11D-A10L-01 f34658c8-7428-4139-af10-c0040c168a02 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.after_5NN.copynumber.data.txt'. TCGA-E2-A106 TCGA-E2-A106-01A TCGA-E2-A106-01A-11D-A10L-01 f34658c8-7428-4139-af10-c0040c168a02 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.after_5NN.copynumber.data.txt'. TCGA-E2-A106 TCGA-E2-A106-01A TCGA-E2-A106-01A-11D-A10L-01 f34658c8-7428-4139-af10-c0040c168a02 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.after_5NN.copynumber.data.txt'. TCGA-E2-A106 TCGA-E2-A106-01A TCGA-E2-A106-01A-11D-A10L-01 f34658c8-7428-4139-af10-c0040c168a02 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.after_5NN.copynumber.data.txt'. TCGA-E2-A106 TCGA-E2-A106-01A TCGA-E2-A106-01A-11D-A10L-01 f34658c8-7428-4139-af10-c0040c168a02 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.after_5NN.copynumber.data.txt'. TCGA-E2-A106 TCGA-E2-A106-01A TCGA-E2-A106-01A-11D-A10L-01 f34658c8-7428-4139-af10-c0040c168a02 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.tangent.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.after_5NN.copynumber.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H09_734634.after_5NN.copynumber.data.txt'. TCGA-E2-A106 TCGA-E2-A106-01A TCGA-E2-A106-01A-11D-A10M-09 218f002e-ac9e-4b59-8cb6-4f7d5395fafa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A106.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A106 TCGA-E2-A106-01A TCGA-E2-A106-01A-11D-A10N-05 1984f719-c6c3-4144-b527-a40ce1bd100d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A106.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A106 TCGA-E2-A106-01A TCGA-E2-A106-01A-11D-A10N-05 1984f719-c6c3-4144-b527-a40ce1bd100d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486017_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-E2-A106 TCGA-E2-A106-01A TCGA-E2-A106-01A-11D-A10N-05 1984f719-c6c3-4144-b527-a40ce1bd100d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486017_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-E2-A106 TCGA-E2-A106-01A TCGA-E2-A106-01A-11D-A10N-05 1984f719-c6c3-4144-b527-a40ce1bd100d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-E2-A106-01A-11D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM TCGA-E2-A106 TCGA-E2-A106-01A TCGA-E2-A106-01A-11D-A10N-05 1984f719-c6c3-4144-b527-a40ce1bd100d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-E2-A106-01A-11D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM TCGA-E2-A106 TCGA-E2-A106-01A TCGA-E2-A106-01A-11R-A10I-13 7a26d557-701a-4b7d-8eac-26e9581e70ae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A106.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A106 TCGA-E2-A106-01A TCGA-E2-A106-01A-11R-A10I-13 7a26d557-701a-4b7d-8eac-26e9581e70ae miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-E2-A106-01A-11R-A10I-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-E2-A106 TCGA-E2-A106-01A TCGA-E2-A106-01A-11R-A10I-13 7a26d557-701a-4b7d-8eac-26e9581e70ae miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-E2-A106-01A-11R-A10I-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-E2-A106 TCGA-E2-A106-01A TCGA-E2-A106-01A-11R-A10J-07 cbd64838-97a7-47a9-a4dc-aa9e0d0ab3d2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A106.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A106 TCGA-E2-A106-01A TCGA-E2-A106-01A-11R-A10J-07 cbd64838-97a7-47a9-a4dc-aa9e0d0ab3d2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012727_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM TCGA-E2-A106 TCGA-E2-A106-01A TCGA-E2-A106-01A-11R-A10J-07 cbd64838-97a7-47a9-a4dc-aa9e0d0ab3d2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012727_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM TCGA-E2-A106 TCGA-E2-A106-01A TCGA-E2-A106-01A-11R-A10J-07 cbd64838-97a7-47a9-a4dc-aa9e0d0ab3d2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012727_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM TCGA-E2-A106 TCGA-E2-A106-01A TCGA-E2-A106-01A-11R-A10J-07 cbd64838-97a7-47a9-a4dc-aa9e0d0ab3d2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_577263.TCGA-E2-A106-01A-11R-A10J-07.110517_UNC13-SN749_0065_BC02LHABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A106 TCGA-E2-A106-01A TCGA-E2-A106-01A-11R-A10J-07 cbd64838-97a7-47a9-a4dc-aa9e0d0ab3d2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_577295.TCGA-E2-A106-01A-11R-A10J-07.110517_UNC13-SN749_0065_BC02LHABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A106 TCGA-E2-A106-01A TCGA-E2-A106-01A-11R-A10J-07 cbd64838-97a7-47a9-a4dc-aa9e0d0ab3d2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_577407.TCGA-E2-A106-01A-11R-A10J-07.110517_UNC13-SN749_0065_BC02LHABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A106 TCGA-E2-A106-01A TCGA-E2-A106-01A-11W-A124-09 f64bb134-678a-4532-9511-5cf311fd5883 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A106.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A106 TCGA-E2-A106-10A TCGA-E2-A106-10A-01D-A10K-02 72e9cd72-429a-48d6-87a5-198d20b97c08 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A106.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A106 TCGA-E2-A106-10A TCGA-E2-A106-10A-01D-A10L-01 805071f6-8076-4747-b542-38058a067bdd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A106.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A106 TCGA-E2-A106-10A TCGA-E2-A106-10A-01D-A10L-01 805071f6-8076-4747-b542-38058a067bdd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E09_734690.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-E2-A106 TCGA-E2-A106-10A TCGA-E2-A106-10A-01D-A10L-01 805071f6-8076-4747-b542-38058a067bdd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E09_734690.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A106 TCGA-E2-A106-10A TCGA-E2-A106-10A-01D-A10L-01 805071f6-8076-4747-b542-38058a067bdd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E09_734690.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A106 TCGA-E2-A106-10A TCGA-E2-A106-10A-01D-A10L-01 805071f6-8076-4747-b542-38058a067bdd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E09_734690.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A106 TCGA-E2-A106-10A TCGA-E2-A106-10A-01D-A10L-01 805071f6-8076-4747-b542-38058a067bdd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E09_734690.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A106 TCGA-E2-A106-10A TCGA-E2-A106-10A-01D-A10L-01 805071f6-8076-4747-b542-38058a067bdd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E09_734690.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A106 TCGA-E2-A106-10A TCGA-E2-A106-10A-01D-A10L-01 805071f6-8076-4747-b542-38058a067bdd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E09_734690.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A106 TCGA-E2-A106-10A TCGA-E2-A106-10A-01D-A10L-01 805071f6-8076-4747-b542-38058a067bdd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E09_734690.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-E2-A106 TCGA-E2-A106-10A TCGA-E2-A106-10A-01D-A10M-09 16af4908-c4ca-4209-b5a3-fdabea073eb7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A106.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A106 TCGA-E2-A106-10A TCGA-E2-A106-10A-01W-A124-09 14f33169-4914-4d9f-8ad4-92766ca73a26 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A106.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A107 TCGA-E2-A107-01A TCGA-E2-A107-01A-11D-A10K-02 feccef63-b967-432e-a2b5-32cf74383274 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A107.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A107 TCGA-E2-A107-01A TCGA-E2-A107-01A-11D-A10L-01 66b6796c-a14a-4bef-ac6b-aee438e04563 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A107.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A107 TCGA-E2-A107-01A TCGA-E2-A107-01A-11D-A10L-01 66b6796c-a14a-4bef-ac6b-aee438e04563 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E11_734768.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-E2-A107 TCGA-E2-A107-01A TCGA-E2-A107-01A-11D-A10L-01 66b6796c-a14a-4bef-ac6b-aee438e04563 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E11_734768.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A107 TCGA-E2-A107-01A TCGA-E2-A107-01A-11D-A10L-01 66b6796c-a14a-4bef-ac6b-aee438e04563 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E11_734768.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A107 TCGA-E2-A107-01A TCGA-E2-A107-01A-11D-A10L-01 66b6796c-a14a-4bef-ac6b-aee438e04563 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E11_734768.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A107 TCGA-E2-A107-01A TCGA-E2-A107-01A-11D-A10L-01 66b6796c-a14a-4bef-ac6b-aee438e04563 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E11_734768.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A107 TCGA-E2-A107-01A TCGA-E2-A107-01A-11D-A10L-01 66b6796c-a14a-4bef-ac6b-aee438e04563 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E11_734768.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A107 TCGA-E2-A107-01A TCGA-E2-A107-01A-11D-A10L-01 66b6796c-a14a-4bef-ac6b-aee438e04563 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E11_734768.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A107 TCGA-E2-A107-01A TCGA-E2-A107-01A-11D-A10L-01 66b6796c-a14a-4bef-ac6b-aee438e04563 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E11_734768.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-E2-A107 TCGA-E2-A107-01A TCGA-E2-A107-01A-11D-A10M-09 5804fc1c-063b-429d-a652-22b0de416bd6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A107.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A107 TCGA-E2-A107-01A TCGA-E2-A107-01A-11D-A10M-09 5804fc1c-063b-429d-a652-22b0de416bd6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A107 TCGA-E2-A107-01A TCGA-E2-A107-01A-11D-A10N-05 9cc46de7-ffe5-4bad-9748-a0557ee5f7f2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A107.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A107 TCGA-E2-A107-01A TCGA-E2-A107-01A-11D-A10N-05 9cc46de7-ffe5-4bad-9748-a0557ee5f7f2 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486013_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-E2-A107 TCGA-E2-A107-01A TCGA-E2-A107-01A-11D-A10N-05 9cc46de7-ffe5-4bad-9748-a0557ee5f7f2 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486013_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-E2-A107 TCGA-E2-A107-01A TCGA-E2-A107-01A-11D-A10N-05 9cc46de7-ffe5-4bad-9748-a0557ee5f7f2 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-E2-A107-01A-11D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM TCGA-E2-A107 TCGA-E2-A107-01A TCGA-E2-A107-01A-11D-A10N-05 9cc46de7-ffe5-4bad-9748-a0557ee5f7f2 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-E2-A107-01A-11D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM TCGA-E2-A107 TCGA-E2-A107-01A TCGA-E2-A107-01A-11R-A10I-13 bb4b9fdf-4bf1-4758-b0be-62ad744d9e35 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A107.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A107 TCGA-E2-A107-01A TCGA-E2-A107-01A-11R-A10I-13 bb4b9fdf-4bf1-4758-b0be-62ad744d9e35 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-E2-A107-01A-11R-A10I-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-E2-A107 TCGA-E2-A107-01A TCGA-E2-A107-01A-11R-A10I-13 bb4b9fdf-4bf1-4758-b0be-62ad744d9e35 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-E2-A107-01A-11R-A10I-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-E2-A107 TCGA-E2-A107-01A TCGA-E2-A107-01A-11R-A10J-07 254c611f-7808-4745-9155-f2d578b29df2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A107.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A107 TCGA-E2-A107-01A TCGA-E2-A107-01A-11R-A10J-07 254c611f-7808-4745-9155-f2d578b29df2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012705_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM TCGA-E2-A107 TCGA-E2-A107-01A TCGA-E2-A107-01A-11R-A10J-07 254c611f-7808-4745-9155-f2d578b29df2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012705_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM TCGA-E2-A107 TCGA-E2-A107-01A TCGA-E2-A107-01A-11R-A10J-07 254c611f-7808-4745-9155-f2d578b29df2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012705_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM TCGA-E2-A107 TCGA-E2-A107-01A TCGA-E2-A107-01A-11W-A124-09 bf1e9dbf-68b3-4d9d-9ee2-34176740d42c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A107.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A107 TCGA-E2-A107-10A TCGA-E2-A107-10A-01D-A10K-02 9faadf0c-3244-433e-b361-f053cd967c24 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A107.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A107 TCGA-E2-A107-10A TCGA-E2-A107-10A-01D-A10L-01 669849b2-2171-4c6d-b724-82d76e4ebf6c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A107.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A107 TCGA-E2-A107-10A TCGA-E2-A107-10A-01D-A10L-01 669849b2-2171-4c6d-b724-82d76e4ebf6c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E12_734696.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-E2-A107 TCGA-E2-A107-10A TCGA-E2-A107-10A-01D-A10L-01 669849b2-2171-4c6d-b724-82d76e4ebf6c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E12_734696.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A107 TCGA-E2-A107-10A TCGA-E2-A107-10A-01D-A10L-01 669849b2-2171-4c6d-b724-82d76e4ebf6c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E12_734696.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A107 TCGA-E2-A107-10A TCGA-E2-A107-10A-01D-A10L-01 669849b2-2171-4c6d-b724-82d76e4ebf6c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E12_734696.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A107 TCGA-E2-A107-10A TCGA-E2-A107-10A-01D-A10L-01 669849b2-2171-4c6d-b724-82d76e4ebf6c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E12_734696.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A107 TCGA-E2-A107-10A TCGA-E2-A107-10A-01D-A10L-01 669849b2-2171-4c6d-b724-82d76e4ebf6c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E12_734696.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A107 TCGA-E2-A107-10A TCGA-E2-A107-10A-01D-A10L-01 669849b2-2171-4c6d-b724-82d76e4ebf6c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E12_734696.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A107 TCGA-E2-A107-10A TCGA-E2-A107-10A-01D-A10L-01 669849b2-2171-4c6d-b724-82d76e4ebf6c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E12_734696.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-E2-A107 TCGA-E2-A107-10A TCGA-E2-A107-10A-01D-A10M-09 1a964b4a-8d09-4ea3-8d10-65e252cf0ab2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A107.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A107 TCGA-E2-A107-10A TCGA-E2-A107-10A-01D-A10M-09 1a964b4a-8d09-4ea3-8d10-65e252cf0ab2 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A107 TCGA-E2-A107-10A TCGA-E2-A107-10A-01W-A124-09 984d90bf-2fc6-4946-9582-1038cbfbf4b7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A107.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13D-A10K-02 281f29a3-238f-45a3-a678-7f8040bfa531 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A108.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13D-A10L-01 6c84b94a-ae86-4265-9620-0d66bb6cfacc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A108.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13D-A10L-01 6c84b94a-ae86-4265-9620-0d66bb6cfacc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H11_734802.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13D-A10L-01 6c84b94a-ae86-4265-9620-0d66bb6cfacc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H11_734802.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13D-A10L-01 6c84b94a-ae86-4265-9620-0d66bb6cfacc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H11_734802.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13D-A10L-01 6c84b94a-ae86-4265-9620-0d66bb6cfacc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H11_734802.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13D-A10L-01 6c84b94a-ae86-4265-9620-0d66bb6cfacc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H11_734802.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13D-A10L-01 6c84b94a-ae86-4265-9620-0d66bb6cfacc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H11_734802.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13D-A10L-01 6c84b94a-ae86-4265-9620-0d66bb6cfacc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H11_734802.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13D-A10L-01 6c84b94a-ae86-4265-9620-0d66bb6cfacc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H11_734802.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13D-A10M-09 e3e394d4-2593-4bf9-86e4-2e79d8cb8dab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A108.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13D-A10M-09 e3e394d4-2593-4bf9-86e4-2e79d8cb8dab Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13D-A10N-05 eb7630c0-2f49-4268-82ad-f440d25fc2a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A108.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13D-A10N-05 eb7630c0-2f49-4268-82ad-f440d25fc2a1 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486012_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13D-A10N-05 eb7630c0-2f49-4268-82ad-f440d25fc2a1 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486012_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13D-A10N-05 eb7630c0-2f49-4268-82ad-f440d25fc2a1 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-E2-A108-01A-13D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13D-A10N-05 eb7630c0-2f49-4268-82ad-f440d25fc2a1 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-E2-A108-01A-13D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13R-A10I-13 0164fc71-7db6-481d-a782-4178f665ecff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A108.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13R-A10I-13 0164fc71-7db6-481d-a782-4178f665ecff miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-E2-A108-01A-13R-A10I-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13R-A10I-13 0164fc71-7db6-481d-a782-4178f665ecff miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-E2-A108-01A-13R-A10I-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13R-A10J-07 48188b57-1f05-43dc-b8d4-a422c4f443a9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A108.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13R-A10J-07 48188b57-1f05-43dc-b8d4-a422c4f443a9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012709_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13R-A10J-07 48188b57-1f05-43dc-b8d4-a422c4f443a9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012709_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13R-A10J-07 48188b57-1f05-43dc-b8d4-a422c4f443a9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012709_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13R-A10J-07 48188b57-1f05-43dc-b8d4-a422c4f443a9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_438433.TCGA-E2-A108-01A-13R-A10J-07.110517_UNC13-SN749_0065_BC02LHABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13R-A10J-07 48188b57-1f05-43dc-b8d4-a422c4f443a9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_438478.TCGA-E2-A108-01A-13R-A10J-07.110517_UNC13-SN749_0065_BC02LHABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13R-A10J-07 48188b57-1f05-43dc-b8d4-a422c4f443a9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_438615.TCGA-E2-A108-01A-13R-A10J-07.110517_UNC13-SN749_0065_BC02LHABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A108 TCGA-E2-A108-01A TCGA-E2-A108-01A-13W-A124-09 4af3a47d-046a-42c5-b964-878f78f46549 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A108.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A108 TCGA-E2-A108-10A TCGA-E2-A108-10A-01D-A10K-02 9f39def1-f4f6-4ee8-a290-d53f34a23f23 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A108.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A108 TCGA-E2-A108-10A TCGA-E2-A108-10A-01D-A10L-01 715ce921-f822-47cc-aec7-3c97cc2a2667 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A108.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A108 TCGA-E2-A108-10A TCGA-E2-A108-10A-01D-A10L-01 715ce921-f822-47cc-aec7-3c97cc2a2667 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G05_734630.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-E2-A108 TCGA-E2-A108-10A TCGA-E2-A108-10A-01D-A10L-01 715ce921-f822-47cc-aec7-3c97cc2a2667 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G05_734630.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A108 TCGA-E2-A108-10A TCGA-E2-A108-10A-01D-A10L-01 715ce921-f822-47cc-aec7-3c97cc2a2667 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G05_734630.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A108 TCGA-E2-A108-10A TCGA-E2-A108-10A-01D-A10L-01 715ce921-f822-47cc-aec7-3c97cc2a2667 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G05_734630.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A108 TCGA-E2-A108-10A TCGA-E2-A108-10A-01D-A10L-01 715ce921-f822-47cc-aec7-3c97cc2a2667 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G05_734630.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A108 TCGA-E2-A108-10A TCGA-E2-A108-10A-01D-A10L-01 715ce921-f822-47cc-aec7-3c97cc2a2667 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G05_734630.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A108 TCGA-E2-A108-10A TCGA-E2-A108-10A-01D-A10L-01 715ce921-f822-47cc-aec7-3c97cc2a2667 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G05_734630.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A108 TCGA-E2-A108-10A TCGA-E2-A108-10A-01D-A10L-01 715ce921-f822-47cc-aec7-3c97cc2a2667 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G05_734630.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-E2-A108 TCGA-E2-A108-10A TCGA-E2-A108-10A-01D-A10M-09 ddbcaa72-c832-4944-aebe-2324670d568f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A108.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A108 TCGA-E2-A108-10A TCGA-E2-A108-10A-01D-A10M-09 ddbcaa72-c832-4944-aebe-2324670d568f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A108 TCGA-E2-A108-10A TCGA-E2-A108-10A-01W-A124-09 909120b9-9bff-4b00-8dcc-6c13e43bc40b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A108.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11D-A10K-02 8cec55d9-af42-4356-9144-ba71d78ecc23 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A109.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11D-A10L-01 818dbfb5-8c4a-44d1-a44d-6cb138dadca6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A109.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11D-A10L-01 818dbfb5-8c4a-44d1-a44d-6cb138dadca6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G07_734644.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11D-A10L-01 818dbfb5-8c4a-44d1-a44d-6cb138dadca6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G07_734644.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11D-A10L-01 818dbfb5-8c4a-44d1-a44d-6cb138dadca6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G07_734644.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11D-A10L-01 818dbfb5-8c4a-44d1-a44d-6cb138dadca6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G07_734644.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11D-A10L-01 818dbfb5-8c4a-44d1-a44d-6cb138dadca6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G07_734644.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11D-A10L-01 818dbfb5-8c4a-44d1-a44d-6cb138dadca6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G07_734644.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11D-A10L-01 818dbfb5-8c4a-44d1-a44d-6cb138dadca6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G07_734644.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11D-A10L-01 818dbfb5-8c4a-44d1-a44d-6cb138dadca6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_G07_734644.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11D-A10M-09 3585e133-b3c1-4d90-b5f2-2b867e0ae0ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A109.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11D-A10M-09 3585e133-b3c1-4d90-b5f2-2b867e0ae0ec Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11D-A10N-05 6fb5a180-0597-436a-9bf0-4d019d07f09e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A109.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11D-A10N-05 6fb5a180-0597-436a-9bf0-4d019d07f09e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486017_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11D-A10N-05 6fb5a180-0597-436a-9bf0-4d019d07f09e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486017_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11D-A10N-05 6fb5a180-0597-436a-9bf0-4d019d07f09e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-E2-A109-01A-11D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11D-A10N-05 6fb5a180-0597-436a-9bf0-4d019d07f09e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-E2-A109-01A-11D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11R-A10I-13 3a97a371-ee2f-447e-a7a1-f249247e52d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A109.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11R-A10I-13 3a97a371-ee2f-447e-a7a1-f249247e52d6 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-E2-A109-01A-11R-A10I-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11R-A10I-13 3a97a371-ee2f-447e-a7a1-f249247e52d6 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-E2-A109-01A-11R-A10I-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11R-A10J-07 d6aae541-9dec-4055-bfd6-51ebbdcbf7a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A109.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11R-A10J-07 d6aae541-9dec-4055-bfd6-51ebbdcbf7a2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012712_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11R-A10J-07 d6aae541-9dec-4055-bfd6-51ebbdcbf7a2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012712_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11R-A10J-07 d6aae541-9dec-4055-bfd6-51ebbdcbf7a2 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012712_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11R-A10J-07 d6aae541-9dec-4055-bfd6-51ebbdcbf7a2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_438575.TCGA-E2-A109-01A-11R-A10J-07.110517_UNC13-SN749_0065_BC02LHABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11R-A10J-07 d6aae541-9dec-4055-bfd6-51ebbdcbf7a2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_438602.TCGA-E2-A109-01A-11R-A10J-07.110517_UNC13-SN749_0065_BC02LHABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11R-A10J-07 d6aae541-9dec-4055-bfd6-51ebbdcbf7a2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_438754.TCGA-E2-A109-01A-11R-A10J-07.110517_UNC13-SN749_0065_BC02LHABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A109 TCGA-E2-A109-01A TCGA-E2-A109-01A-11W-A124-09 6cd44417-0df8-466c-89ea-efbd4e0770cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A109.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A109 TCGA-E2-A109-10A TCGA-E2-A109-10A-01D-A10K-02 0c8d5396-cfe6-432f-ae00-3718c7200817 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A109.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A109 TCGA-E2-A109-10A TCGA-E2-A109-10A-01D-A10L-01 2ba5fd51-f3f3-4a68-9bdc-ca47b2c6312c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A109.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A109 TCGA-E2-A109-10A TCGA-E2-A109-10A-01D-A10L-01 2ba5fd51-f3f3-4a68-9bdc-ca47b2c6312c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B02_734656.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-E2-A109 TCGA-E2-A109-10A TCGA-E2-A109-10A-01D-A10L-01 2ba5fd51-f3f3-4a68-9bdc-ca47b2c6312c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B02_734656.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A109 TCGA-E2-A109-10A TCGA-E2-A109-10A-01D-A10L-01 2ba5fd51-f3f3-4a68-9bdc-ca47b2c6312c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B02_734656.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A109 TCGA-E2-A109-10A TCGA-E2-A109-10A-01D-A10L-01 2ba5fd51-f3f3-4a68-9bdc-ca47b2c6312c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B02_734656.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A109 TCGA-E2-A109-10A TCGA-E2-A109-10A-01D-A10L-01 2ba5fd51-f3f3-4a68-9bdc-ca47b2c6312c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B02_734656.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A109 TCGA-E2-A109-10A TCGA-E2-A109-10A-01D-A10L-01 2ba5fd51-f3f3-4a68-9bdc-ca47b2c6312c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B02_734656.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A109 TCGA-E2-A109-10A TCGA-E2-A109-10A-01D-A10L-01 2ba5fd51-f3f3-4a68-9bdc-ca47b2c6312c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B02_734656.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A109 TCGA-E2-A109-10A TCGA-E2-A109-10A-01D-A10L-01 2ba5fd51-f3f3-4a68-9bdc-ca47b2c6312c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B02_734656.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-E2-A109 TCGA-E2-A109-10A TCGA-E2-A109-10A-01D-A10M-09 7826a2e6-30ae-460b-ab97-2986f1d76d4b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A109.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A109 TCGA-E2-A109-10A TCGA-E2-A109-10A-01D-A10M-09 7826a2e6-30ae-460b-ab97-2986f1d76d4b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A109 TCGA-E2-A109-10A TCGA-E2-A109-10A-01W-A124-09 2ddc4d43-e6b5-4a36-8190-460a04f903d5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A109.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21D-A10X-02 a759f6d2-6fbd-4208-bbfe-ba983f57bb6d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21D-A10Y-09 cd49ccc5-a776-4307-930c-298ba6cfdf79 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21D-A10Y-09 cd49ccc5-a776-4307-930c-298ba6cfdf79 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21D-A111-01 d01c9656-e545-4261-aceb-135ef42825ce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21D-A111-01 d01c9656-e545-4261-aceb-135ef42825ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C11_735316.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21D-A111-01 d01c9656-e545-4261-aceb-135ef42825ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C11_735316.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21D-A111-01 d01c9656-e545-4261-aceb-135ef42825ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C11_735316.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21D-A111-01 d01c9656-e545-4261-aceb-135ef42825ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C11_735316.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21D-A111-01 d01c9656-e545-4261-aceb-135ef42825ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C11_735316.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21D-A111-01 d01c9656-e545-4261-aceb-135ef42825ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C11_735316.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21D-A111-01 d01c9656-e545-4261-aceb-135ef42825ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C11_735316.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21D-A111-01 d01c9656-e545-4261-aceb-135ef42825ce SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C11_735316.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21D-A112-05 e624540b-5fd0-40ea-b93d-acd0de58bedd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21D-A112-05 e624540b-5fd0-40ea-b93d-acd0de58bedd DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-E2-A10A-01A-21D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21D-A112-05 e624540b-5fd0-40ea-b93d-acd0de58bedd DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-E2-A10A-01A-21D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21D-A112-05 e624540b-5fd0-40ea-b93d-acd0de58bedd DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-E2-A10A-01A-21D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21R-A114-13 e3677753-259a-41aa-82ad-62f5e7139790 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21R-A114-13 e3677753-259a-41aa-82ad-62f5e7139790 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A10A-01A-21R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21R-A114-13 e3677753-259a-41aa-82ad-62f5e7139790 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A10A-01A-21R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21R-A115-07 104213ad-3ec6-4a24-9760-72333b6c2c22 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21R-A115-07 104213ad-3ec6-4a24-9760-72333b6c2c22 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012812_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21R-A115-07 104213ad-3ec6-4a24-9760-72333b6c2c22 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012812_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21R-A115-07 104213ad-3ec6-4a24-9760-72333b6c2c22 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012812_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21R-A115-07 104213ad-3ec6-4a24-9760-72333b6c2c22 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421394.TCGA-E2-A10A-01A-21R-A115-07.110527_UNC10-SN254_0225_BD0CVWABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21R-A115-07 104213ad-3ec6-4a24-9760-72333b6c2c22 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421400.TCGA-E2-A10A-01A-21R-A115-07.110527_UNC10-SN254_0225_BD0CVWABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21R-A115-07 104213ad-3ec6-4a24-9760-72333b6c2c22 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421427.TCGA-E2-A10A-01A-21R-A115-07.110527_UNC10-SN254_0225_BD0CVWABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A10A TCGA-E2-A10A-01A TCGA-E2-A10A-01A-21W-A12T-09 a11d24bc-2482-487d-ac68-0839f1c2b84e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A10A TCGA-E2-A10A-10A TCGA-E2-A10A-10A-01D-A10Z-02 697daf3e-4108-4aa2-bc32-6a72a771722b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A10A TCGA-E2-A10A-10A TCGA-E2-A10A-10A-01D-A110-09 bb8f16ce-4126-41ad-8775-9f7322e07420 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A10A TCGA-E2-A10A-10A TCGA-E2-A10A-10A-01D-A110-09 bb8f16ce-4126-41ad-8775-9f7322e07420 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A10A TCGA-E2-A10A-10A TCGA-E2-A10A-10A-01D-A113-01 90d88bcb-be0c-4a65-baed-756b6773a5b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A10A TCGA-E2-A10A-10A TCGA-E2-A10A-10A-01D-A113-01 90d88bcb-be0c-4a65-baed-756b6773a5b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E08_735372.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-E2-A10A TCGA-E2-A10A-10A TCGA-E2-A10A-10A-01D-A113-01 90d88bcb-be0c-4a65-baed-756b6773a5b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E08_735372.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A10A TCGA-E2-A10A-10A TCGA-E2-A10A-10A-01D-A113-01 90d88bcb-be0c-4a65-baed-756b6773a5b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E08_735372.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A10A TCGA-E2-A10A-10A TCGA-E2-A10A-10A-01D-A113-01 90d88bcb-be0c-4a65-baed-756b6773a5b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E08_735372.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A10A TCGA-E2-A10A-10A TCGA-E2-A10A-10A-01D-A113-01 90d88bcb-be0c-4a65-baed-756b6773a5b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E08_735372.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A10A TCGA-E2-A10A-10A TCGA-E2-A10A-10A-01D-A113-01 90d88bcb-be0c-4a65-baed-756b6773a5b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E08_735372.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A10A TCGA-E2-A10A-10A TCGA-E2-A10A-10A-01D-A113-01 90d88bcb-be0c-4a65-baed-756b6773a5b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E08_735372.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A10A TCGA-E2-A10A-10A TCGA-E2-A10A-10A-01D-A113-01 90d88bcb-be0c-4a65-baed-756b6773a5b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E08_735372.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-E2-A10A TCGA-E2-A10A-10A TCGA-E2-A10A-10A-01W-A12U-09 3043c531-b5f6-4221-9937-bb7ed60733a7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11D-A10K-02 056aba96-8177-45cb-a481-ffe57be51092 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11D-A10L-01 b451d230-d158-40cb-91a9-bf25a4da50e6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11D-A10L-01 b451d230-d158-40cb-91a9-bf25a4da50e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B03_734686.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11D-A10L-01 b451d230-d158-40cb-91a9-bf25a4da50e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B03_734686.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11D-A10L-01 b451d230-d158-40cb-91a9-bf25a4da50e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B03_734686.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11D-A10L-01 b451d230-d158-40cb-91a9-bf25a4da50e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B03_734686.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11D-A10L-01 b451d230-d158-40cb-91a9-bf25a4da50e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B03_734686.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11D-A10L-01 b451d230-d158-40cb-91a9-bf25a4da50e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B03_734686.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11D-A10L-01 b451d230-d158-40cb-91a9-bf25a4da50e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B03_734686.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11D-A10L-01 b451d230-d158-40cb-91a9-bf25a4da50e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_B03_734686.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11D-A10M-09 9d712002-74cb-459a-b350-e9a4b49aac13 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11D-A10M-09 9d712002-74cb-459a-b350-e9a4b49aac13 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11D-A10N-05 a08e9477-f3ea-4fc0-abcd-41d6512d2e78 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11D-A10N-05 a08e9477-f3ea-4fc0-abcd-41d6512d2e78 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486012_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11D-A10N-05 a08e9477-f3ea-4fc0-abcd-41d6512d2e78 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486012_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11D-A10N-05 a08e9477-f3ea-4fc0-abcd-41d6512d2e78 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-E2-A10B-01A-11D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11D-A10N-05 a08e9477-f3ea-4fc0-abcd-41d6512d2e78 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-E2-A10B-01A-11D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11D-A125-01 040c038f-577b-47a5-a9af-02803b4ee7bd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11R-A10I-13 0c8b6273-a63e-419f-91ee-8cc56744c5f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11R-A10I-13 0c8b6273-a63e-419f-91ee-8cc56744c5f7 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-E2-A10B-01A-11R-A10I-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11R-A10I-13 0c8b6273-a63e-419f-91ee-8cc56744c5f7 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-E2-A10B-01A-11R-A10I-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11R-A10J-07 3b72a173-8ce4-444e-aeeb-39be3f3eb558 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11R-A10J-07 3b72a173-8ce4-444e-aeeb-39be3f3eb558 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012731_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11R-A10J-07 3b72a173-8ce4-444e-aeeb-39be3f3eb558 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012731_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11R-A10J-07 3b72a173-8ce4-444e-aeeb-39be3f3eb558 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012731_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11R-A10J-07 3b72a173-8ce4-444e-aeeb-39be3f3eb558 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439551.TCGA-E2-A10B-01A-11R-A10J-07.110517_UNC13-SN749_0065_BC02LHABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11R-A10J-07 3b72a173-8ce4-444e-aeeb-39be3f3eb558 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439554.TCGA-E2-A10B-01A-11R-A10J-07.110517_UNC13-SN749_0065_BC02LHABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11R-A10J-07 3b72a173-8ce4-444e-aeeb-39be3f3eb558 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439625.TCGA-E2-A10B-01A-11R-A10J-07.110517_UNC13-SN749_0065_BC02LHABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A10B TCGA-E2-A10B-01A TCGA-E2-A10B-01A-11W-A124-09 dbe2462f-9e32-4658-86eb-8ca06a0474e6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10B TCGA-E2-A10B-10A TCGA-E2-A10B-10A-01D-A10K-02 3870647d-a5dd-449a-ad22-ed930d72c1bb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10B TCGA-E2-A10B-10A TCGA-E2-A10B-10A-01D-A10L-01 92f648fb-617c-4976-be6e-6e408f6e666e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F04_734764.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F04_734764.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F04_734764.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F04_734764.ismpolish.data.txt'. TCGA-E2-A10B TCGA-E2-A10B-10A TCGA-E2-A10B-10A-01D-A10L-01 92f648fb-617c-4976-be6e-6e408f6e666e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F04_734764.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F04_734764.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F04_734764.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F04_734764.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F04_734764.ismpolish.data.txt'. TCGA-E2-A10B TCGA-E2-A10B-10A TCGA-E2-A10B-10A-01D-A10L-01 92f648fb-617c-4976-be6e-6e408f6e666e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F04_734764.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F04_734764.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F04_734764.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F04_734764.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F04_734764.ismpolish.data.txt'. TCGA-E2-A10B TCGA-E2-A10B-10A TCGA-E2-A10B-10A-01D-A10M-09 814d30f1-0842-4ace-86c2-fb1c50013484 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10B TCGA-E2-A10B-10A TCGA-E2-A10B-10A-01D-A10M-09 814d30f1-0842-4ace-86c2-fb1c50013484 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A10B TCGA-E2-A10B-10A TCGA-E2-A10B-10A-01W-A124-09 c571cb3f-0df9-42b1-a3f0-7df393bb59e9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10C TCGA-E2-A10C-01A TCGA-E2-A10C-01A-21D-A10K-02 3a45c74f-0d68-4e47-93ed-397c70bafc19 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10C TCGA-E2-A10C-01A TCGA-E2-A10C-01A-21D-A10L-01 47ba6d6f-734a-4e33-af3e-eef3783cc26b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10C TCGA-E2-A10C-01A TCGA-E2-A10C-01A-21D-A10L-01 47ba6d6f-734a-4e33-af3e-eef3783cc26b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H04_734714.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-E2-A10C TCGA-E2-A10C-01A TCGA-E2-A10C-01A-21D-A10L-01 47ba6d6f-734a-4e33-af3e-eef3783cc26b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H04_734714.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10C TCGA-E2-A10C-01A TCGA-E2-A10C-01A-21D-A10L-01 47ba6d6f-734a-4e33-af3e-eef3783cc26b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H04_734714.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10C TCGA-E2-A10C-01A TCGA-E2-A10C-01A-21D-A10L-01 47ba6d6f-734a-4e33-af3e-eef3783cc26b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H04_734714.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10C TCGA-E2-A10C-01A TCGA-E2-A10C-01A-21D-A10L-01 47ba6d6f-734a-4e33-af3e-eef3783cc26b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H04_734714.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10C TCGA-E2-A10C-01A TCGA-E2-A10C-01A-21D-A10L-01 47ba6d6f-734a-4e33-af3e-eef3783cc26b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H04_734714.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10C TCGA-E2-A10C-01A TCGA-E2-A10C-01A-21D-A10L-01 47ba6d6f-734a-4e33-af3e-eef3783cc26b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H04_734714.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10C TCGA-E2-A10C-01A TCGA-E2-A10C-01A-21D-A10L-01 47ba6d6f-734a-4e33-af3e-eef3783cc26b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H04_734714.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-E2-A10C TCGA-E2-A10C-01A TCGA-E2-A10C-01A-21D-A10M-09 2750ed41-0bd4-4cf4-98f5-762957cf80b7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10C TCGA-E2-A10C-01A TCGA-E2-A10C-01A-21D-A10M-09 2750ed41-0bd4-4cf4-98f5-762957cf80b7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A10C TCGA-E2-A10C-01A TCGA-E2-A10C-01A-21D-A10N-05 6233dbd1-3e48-4d86-a0c0-fe4ab87900f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10C TCGA-E2-A10C-01A TCGA-E2-A10C-01A-21D-A10N-05 6233dbd1-3e48-4d86-a0c0-fe4ab87900f7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486012_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-E2-A10C TCGA-E2-A10C-01A TCGA-E2-A10C-01A-21D-A10N-05 6233dbd1-3e48-4d86-a0c0-fe4ab87900f7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486012_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-E2-A10C TCGA-E2-A10C-01A TCGA-E2-A10C-01A-21D-A10N-05 6233dbd1-3e48-4d86-a0c0-fe4ab87900f7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-E2-A10C-01A-21D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM TCGA-E2-A10C TCGA-E2-A10C-01A TCGA-E2-A10C-01A-21D-A10N-05 6233dbd1-3e48-4d86-a0c0-fe4ab87900f7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-E2-A10C-01A-21D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM TCGA-E2-A10C TCGA-E2-A10C-01A TCGA-E2-A10C-01A-21R-A10I-13 32e13523-5399-43d1-81b4-cd199c531cd3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10C TCGA-E2-A10C-01A TCGA-E2-A10C-01A-21R-A10I-13 32e13523-5399-43d1-81b4-cd199c531cd3 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-E2-A10C-01A-21R-A10I-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-E2-A10C TCGA-E2-A10C-01A TCGA-E2-A10C-01A-21R-A10I-13 32e13523-5399-43d1-81b4-cd199c531cd3 miRNASeq IlluminaGA_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012734_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM TCGA-E2-A10C TCGA-E2-A10C-01A TCGA-E2-A10C-01A-21R-A10J-07 1f7762ae-94bf-4ab4-a6d6-7fe57b1e1e99 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012734_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM TCGA-E2-A10C TCGA-E2-A10C-01A TCGA-E2-A10C-01A-21R-A10J-07 1f7762ae-94bf-4ab4-a6d6-7fe57b1e1e99 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012734_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM TCGA-E2-A10C TCGA-E2-A10C-01A TCGA-E2-A10C-01A-21R-A10J-07 1f7762ae-94bf-4ab4-a6d6-7fe57b1e1e99 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421075.TCGA-E2-A10C-01A-21R-A10J-07.110606_UNC12-SN629_0090_AD0CTGABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A10C TCGA-E2-A10C-01A TCGA-E2-A10C-01A-21R-A10J-07 1f7762ae-94bf-4ab4-a6d6-7fe57b1e1e99 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421108.TCGA-E2-A10C-01A-21R-A10J-07.110606_UNC12-SN629_0090_AD0CTGABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A10C TCGA-E2-A10C-01A TCGA-E2-A10C-01A-21R-A10J-07 1f7762ae-94bf-4ab4-a6d6-7fe57b1e1e99 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421157.TCGA-E2-A10C-01A-21R-A10J-07.110606_UNC12-SN629_0090_AD0CTGABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A10C TCGA-E2-A10C-01A TCGA-E2-A10C-01A-21W-A124-09 c661838b-ee62-4719-a2f5-fd856cd57c4e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10C TCGA-E2-A10C-10A TCGA-E2-A10C-10A-01D-A10K-02 913e589e-6311-4043-854a-149dfa81eda6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10C TCGA-E2-A10C-10A TCGA-E2-A10C-10A-01D-A10L-01 49f6ebee-87e5-4d46-9e90-9a09eea874a4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10C TCGA-E2-A10C-10A TCGA-E2-A10C-10A-01D-A10L-01 49f6ebee-87e5-4d46-9e90-9a09eea874a4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H02_734732.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-E2-A10C TCGA-E2-A10C-10A TCGA-E2-A10C-10A-01D-A10L-01 49f6ebee-87e5-4d46-9e90-9a09eea874a4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H02_734732.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10C TCGA-E2-A10C-10A TCGA-E2-A10C-10A-01D-A10L-01 49f6ebee-87e5-4d46-9e90-9a09eea874a4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H02_734732.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10C TCGA-E2-A10C-10A TCGA-E2-A10C-10A-01D-A10L-01 49f6ebee-87e5-4d46-9e90-9a09eea874a4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H02_734732.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10C TCGA-E2-A10C-10A TCGA-E2-A10C-10A-01D-A10L-01 49f6ebee-87e5-4d46-9e90-9a09eea874a4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H02_734732.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10C TCGA-E2-A10C-10A TCGA-E2-A10C-10A-01D-A10L-01 49f6ebee-87e5-4d46-9e90-9a09eea874a4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H02_734732.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10C TCGA-E2-A10C-10A TCGA-E2-A10C-10A-01D-A10L-01 49f6ebee-87e5-4d46-9e90-9a09eea874a4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H02_734732.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10C TCGA-E2-A10C-10A TCGA-E2-A10C-10A-01D-A10L-01 49f6ebee-87e5-4d46-9e90-9a09eea874a4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H02_734732.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-E2-A10C TCGA-E2-A10C-10A TCGA-E2-A10C-10A-01D-A10M-09 92567dce-0f9e-4885-8260-0196fef7a91b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10C TCGA-E2-A10C-10A TCGA-E2-A10C-10A-01D-A10M-09 92567dce-0f9e-4885-8260-0196fef7a91b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A10C TCGA-E2-A10C-10A TCGA-E2-A10C-10A-01W-A124-09 9158d1f2-d1e7-4bdb-9576-af3cf87b0156 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21D-A10K-02 749dc30b-0fc0-4c6e-beb3-fd676a6a57ba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21D-A10L-01 828071d6-b83c-4040-8012-8a25ef18261a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21D-A10L-01 828071d6-b83c-4040-8012-8a25ef18261a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F08_734784.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21D-A10L-01 828071d6-b83c-4040-8012-8a25ef18261a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F08_734784.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21D-A10L-01 828071d6-b83c-4040-8012-8a25ef18261a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F08_734784.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21D-A10L-01 828071d6-b83c-4040-8012-8a25ef18261a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F08_734784.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21D-A10L-01 828071d6-b83c-4040-8012-8a25ef18261a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F08_734784.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21D-A10L-01 828071d6-b83c-4040-8012-8a25ef18261a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F08_734784.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21D-A10L-01 828071d6-b83c-4040-8012-8a25ef18261a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F08_734784.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21D-A10L-01 828071d6-b83c-4040-8012-8a25ef18261a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F08_734784.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21D-A10M-09 1bb66f02-3977-4ab2-8800-beb75513385b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21D-A10M-09 1bb66f02-3977-4ab2-8800-beb75513385b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21D-A10N-05 df083d34-e082-4dd0-b4f7-347a1eaa0190 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21D-A10N-05 df083d34-e082-4dd0-b4f7-347a1eaa0190 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486013_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21D-A10N-05 df083d34-e082-4dd0-b4f7-347a1eaa0190 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486013_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21D-A10N-05 df083d34-e082-4dd0-b4f7-347a1eaa0190 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-E2-A10E-01A-21D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21D-A10N-05 df083d34-e082-4dd0-b4f7-347a1eaa0190 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-E2-A10E-01A-21D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21R-A10I-13 a541863b-22ee-4b0d-9ccd-903e6f16c9a4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21R-A10I-13 a541863b-22ee-4b0d-9ccd-903e6f16c9a4 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-E2-A10E-01A-21R-A10I-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21R-A10I-13 a541863b-22ee-4b0d-9ccd-903e6f16c9a4 miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-E2-A10E-01A-21R-A10I-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21R-A10J-07 0e932148-a592-42e2-b1df-4fd599db21e9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21R-A10J-07 0e932148-a592-42e2-b1df-4fd599db21e9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012720_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21R-A10J-07 0e932148-a592-42e2-b1df-4fd599db21e9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012720_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21R-A10J-07 0e932148-a592-42e2-b1df-4fd599db21e9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012720_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21R-A10J-07 0e932148-a592-42e2-b1df-4fd599db21e9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_438534.TCGA-E2-A10E-01A-21R-A10J-07.110517_UNC13-SN749_0065_BC02LHABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21R-A10J-07 0e932148-a592-42e2-b1df-4fd599db21e9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_438548.TCGA-E2-A10E-01A-21R-A10J-07.110517_UNC13-SN749_0065_BC02LHABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21R-A10J-07 0e932148-a592-42e2-b1df-4fd599db21e9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_438805.TCGA-E2-A10E-01A-21R-A10J-07.110517_UNC13-SN749_0065_BC02LHABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A10E TCGA-E2-A10E-01A TCGA-E2-A10E-01A-21W-A124-09 175fbf90-bffb-48b2-abdc-13c9d2ba81cc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10E TCGA-E2-A10E-10A TCGA-E2-A10E-10A-01D-A10K-02 76c85383-150b-4cf5-8751-8aa74aeb928b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10E TCGA-E2-A10E-10A TCGA-E2-A10E-10A-01D-A10L-01 6b536a43-8c9c-4c22-ae9f-3bd64b13fdb1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H06_734808.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H06_734808.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H06_734808.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H06_734808.ismpolish.data.txt'. TCGA-E2-A10E TCGA-E2-A10E-10A TCGA-E2-A10E-10A-01D-A10L-01 6b536a43-8c9c-4c22-ae9f-3bd64b13fdb1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H06_734808.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H06_734808.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H06_734808.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H06_734808.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H06_734808.ismpolish.data.txt'. TCGA-E2-A10E TCGA-E2-A10E-10A TCGA-E2-A10E-10A-01D-A10L-01 6b536a43-8c9c-4c22-ae9f-3bd64b13fdb1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H06_734808.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H06_734808.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H06_734808.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H06_734808.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_H06_734808.ismpolish.data.txt'. TCGA-E2-A10E TCGA-E2-A10E-10A TCGA-E2-A10E-10A-01D-A10M-09 d81fe1bd-0628-4d43-bcd3-81ac3e939331 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10E TCGA-E2-A10E-10A TCGA-E2-A10E-10A-01D-A10M-09 d81fe1bd-0628-4d43-bcd3-81ac3e939331 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A10E TCGA-E2-A10E-10A TCGA-E2-A10E-10A-01W-A124-09 59140d78-182b-4656-b704-7019682a8791 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11D-A10K-02 52b04d57-9002-46be-b316-3afaacc8337c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11D-A10L-01 49d20029-a697-4499-8ef4-e87c04dfa2dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11D-A10L-01 49d20029-a697-4499-8ef4-e87c04dfa2dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F09_734680.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11D-A10L-01 49d20029-a697-4499-8ef4-e87c04dfa2dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F09_734680.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11D-A10L-01 49d20029-a697-4499-8ef4-e87c04dfa2dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F09_734680.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11D-A10L-01 49d20029-a697-4499-8ef4-e87c04dfa2dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F09_734680.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11D-A10L-01 49d20029-a697-4499-8ef4-e87c04dfa2dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F09_734680.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11D-A10L-01 49d20029-a697-4499-8ef4-e87c04dfa2dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F09_734680.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11D-A10L-01 49d20029-a697-4499-8ef4-e87c04dfa2dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F09_734680.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11D-A10L-01 49d20029-a697-4499-8ef4-e87c04dfa2dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_F09_734680.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11D-A10M-09 530b7e22-e70a-46ef-a0e8-bf2ef814850a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11D-A10M-09 530b7e22-e70a-46ef-a0e8-bf2ef814850a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11D-A10N-05 5479057c-4289-4ed1-8902-74b28ff48daf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11D-A10N-05 5479057c-4289-4ed1-8902-74b28ff48daf DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486017_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11D-A10N-05 5479057c-4289-4ed1-8902-74b28ff48daf DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0/6005486017_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.6.1.0 80 07-NOV-11 04.27.00.313000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11D-A10N-05 5479057c-4289-4ed1-8902-74b28ff48daf DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-2.TCGA-E2-A10F-01A-11D-A10N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.6.1.0 80 07-NOV-11 05.16.42.335000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11D-A10N-05 5479057c-4289-4ed1-8902-74b28ff48daf DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0/jhu-usc.edu_BRCA.HumanMethylation450.6.lvl-3.TCGA-E2-A10F-01A-11D-A10N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.6.1.0 80 07-NOV-11 06.45.14.592000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11R-A10I-13 c4fdd2a2-d4c5-4e5b-8c1c-9a177b4a484d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11R-A10I-13 c4fdd2a2-d4c5-4e5b-8c1c-9a177b4a484d miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-E2-A10F-01A-11R-A10I-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11R-A10I-13 c4fdd2a2-d4c5-4e5b-8c1c-9a177b4a484d miRNASeq IlluminaGA_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminaga_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0/TCGA-E2-A10F-01A-11R-A10I-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaGA_miRNASeq.Level_3.1.2.0 80 19-OCT-11 03.27.01.962000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11R-A10J-07 05918561-a713-464b-9b5c-4f7c9258a827 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11R-A10J-07 05918561-a713-464b-9b5c-4f7c9258a827 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0/US82800149_251976012724_S01_GE2_107_Sep09.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.5.0.0 80 24-JAN-11 05.20.59.135000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11R-A10J-07 05918561-a713-464b-9b5c-4f7c9258a827 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0/US82800149_251976012724_S01_GE2_107_Sep09.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.5.0.0 80 24-JAN-11 05.19.39.499000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11R-A10J-07 05918561-a713-464b-9b5c-4f7c9258a827 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0/US82800149_251976012724_S01_GE2_107_Sep09.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.5.0.0 80 24-JAN-11 05.20.23.182000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11R-A10J-07 05918561-a713-464b-9b5c-4f7c9258a827 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_438435.TCGA-E2-A10F-01A-11R-A10J-07.110517_UNC13-SN749_0065_BC02LHABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11R-A10J-07 05918561-a713-464b-9b5c-4f7c9258a827 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_438454.TCGA-E2-A10F-01A-11R-A10J-07.110517_UNC13-SN749_0065_BC02LHABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11R-A10J-07 05918561-a713-464b-9b5c-4f7c9258a827 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_438574.TCGA-E2-A10F-01A-11R-A10J-07.110517_UNC13-SN749_0065_BC02LHABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 80 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A10F TCGA-E2-A10F-01A TCGA-E2-A10F-01A-11W-A124-09 149718b9-5e2c-4b91-a723-8ba8bb99e20c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10F TCGA-E2-A10F-10A TCGA-E2-A10F-10A-01D-A10K-02 6e544fad-ecb7-4c65-8d36-8f41c415c653 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10F TCGA-E2-A10F-10A TCGA-E2-A10F-10A-01D-A10L-01 81c506c1-082a-482f-8444-7affb6dbdb8e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10F TCGA-E2-A10F-10A TCGA-E2-A10F-10A-01D-A10L-01 81c506c1-082a-482f-8444-7affb6dbdb8e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E07_734760.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.80.1008.0 80 07-DEC-11 11.33.20.338000000 AM TCGA-E2-A10F TCGA-E2-A10F-10A TCGA-E2-A10F-10A-01D-A10L-01 81c506c1-082a-482f-8444-7affb6dbdb8e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E07_734760.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10F TCGA-E2-A10F-10A TCGA-E2-A10F-10A-01D-A10L-01 81c506c1-082a-482f-8444-7affb6dbdb8e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E07_734760.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10F TCGA-E2-A10F-10A TCGA-E2-A10F-10A-01D-A10L-01 81c506c1-082a-482f-8444-7affb6dbdb8e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E07_734760.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10F TCGA-E2-A10F-10A TCGA-E2-A10F-10A-01D-A10L-01 81c506c1-082a-482f-8444-7affb6dbdb8e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E07_734760.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10F TCGA-E2-A10F-10A TCGA-E2-A10F-10A-01D-A10L-01 81c506c1-082a-482f-8444-7affb6dbdb8e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E07_734760.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10F TCGA-E2-A10F-10A TCGA-E2-A10F-10A-01D-A10L-01 81c506c1-082a-482f-8444-7affb6dbdb8e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E07_734760.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.80.1008.0 80 07-DEC-11 12.42.45.775000000 PM TCGA-E2-A10F TCGA-E2-A10F-10A TCGA-E2-A10F-10A-01D-A10L-01 81c506c1-082a-482f-8444-7affb6dbdb8e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0/ETUIS_p_TCGASNP_b80_83_N_GenomeWideSNP_6_E07_734760.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.80.1008.0 80 07-DEC-11 01.00.12.255000000 PM TCGA-E2-A10F TCGA-E2-A10F-10A TCGA-E2-A10F-10A-01D-A10M-09 2b190b7e-7bb6-46df-8e67-eef219faebd6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A10F TCGA-E2-A10F-10A TCGA-E2-A10F-10A-01D-A10M-09 2b190b7e-7bb6-46df-8e67-eef219faebd6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 80 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A10F TCGA-E2-A10F-10A TCGA-E2-A10F-10A-01W-A124-09 8515874e-4fc7-49ba-8e29-6b95c1e3340b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.80.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A10F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.80.19.0 80 12-JAN-12 08.50.09.333000000 PM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31D-A133-02 20aee4b4-128a-4838-8892-08bc89020ac4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31D-A134-01 ec2186e9-17fc-49c1-a3f2-81f51faf1fc7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31D-A134-01 ec2186e9-17fc-49c1-a3f2-81f51faf1fc7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H06_755850.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31D-A134-01 ec2186e9-17fc-49c1-a3f2-81f51faf1fc7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H06_755850.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31D-A134-01 ec2186e9-17fc-49c1-a3f2-81f51faf1fc7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H06_755850.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31D-A134-01 ec2186e9-17fc-49c1-a3f2-81f51faf1fc7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H06_755850.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31D-A134-01 ec2186e9-17fc-49c1-a3f2-81f51faf1fc7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H06_755850.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31D-A134-01 ec2186e9-17fc-49c1-a3f2-81f51faf1fc7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H06_755850.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31D-A134-01 ec2186e9-17fc-49c1-a3f2-81f51faf1fc7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H06_755850.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31D-A134-01 ec2186e9-17fc-49c1-a3f2-81f51faf1fc7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_H06_755850.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31D-A135-09 00c8d151-2223-4e36-8c66-6c09e42d8777 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31D-A135-09 00c8d151-2223-4e36-8c66-6c09e42d8777 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31D-A138-05 14bfd184-b43f-478c-a372-a138dcf7a849 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31D-A138-05 14bfd184-b43f-478c-a372-a138dcf7a849 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324071_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31D-A138-05 14bfd184-b43f-478c-a372-a138dcf7a849 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324071_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31D-A138-05 14bfd184-b43f-478c-a372-a138dcf7a849 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-2.TCGA-E2-A14N-01A-31D-A138-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0 103 07-NOV-11 05.19.10.670000000 PM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31D-A138-05 14bfd184-b43f-478c-a372-a138dcf7a849 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-3.TCGA-E2-A14N-01A-31D-A138-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0 103 07-NOV-11 05.59.32.897000000 PM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31R-A136-13 94237c10-a115-4451-a747-9a653fd1361a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31R-A136-13 94237c10-a115-4451-a747-9a653fd1361a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A14N-01A-31R-A136-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31R-A136-13 94237c10-a115-4451-a747-9a653fd1361a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A14N-01A-31R-A136-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31R-A137-07 6e45dd01-225d-4871-9a3a-f591808ad234 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31R-A137-07 6e45dd01-225d-4871-9a3a-f591808ad234 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013087_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 103 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31R-A137-07 6e45dd01-225d-4871-9a3a-f591808ad234 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013087_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 103 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31R-A137-07 6e45dd01-225d-4871-9a3a-f591808ad234 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013087_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 103 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31R-A137-07 6e45dd01-225d-4871-9a3a-f591808ad234 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406778.TCGA-E2-A14N-01A-31R-A137-07.110725_UNC9-SN296_0208_AC0477ABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31R-A137-07 6e45dd01-225d-4871-9a3a-f591808ad234 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406801.TCGA-E2-A14N-01A-31R-A137-07.110725_UNC9-SN296_0208_AC0477ABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31R-A137-07 6e45dd01-225d-4871-9a3a-f591808ad234 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406909.TCGA-E2-A14N-01A-31R-A137-07.110725_UNC9-SN296_0208_AC0477ABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14N TCGA-E2-A14N-01A TCGA-E2-A14N-01A-31W-A14P-09 631a4e39-ce07-4f74-b582-81193d95cec8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A14N TCGA-E2-A14N-10A TCGA-E2-A14N-10A-01D-A133-02 6dedb38d-ba12-424c-9056-922961202273 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A14N TCGA-E2-A14N-10A TCGA-E2-A14N-10A-01D-A134-01 68070fb4-c52a-4d54-8775-07606efbf74c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A14N TCGA-E2-A14N-10A TCGA-E2-A14N-10A-01D-A134-01 68070fb4-c52a-4d54-8775-07606efbf74c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G01_755818.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-E2-A14N TCGA-E2-A14N-10A TCGA-E2-A14N-10A-01D-A134-01 68070fb4-c52a-4d54-8775-07606efbf74c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G01_755818.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A14N TCGA-E2-A14N-10A TCGA-E2-A14N-10A-01D-A134-01 68070fb4-c52a-4d54-8775-07606efbf74c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G01_755818.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A14N TCGA-E2-A14N-10A TCGA-E2-A14N-10A-01D-A134-01 68070fb4-c52a-4d54-8775-07606efbf74c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G01_755818.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A14N TCGA-E2-A14N-10A TCGA-E2-A14N-10A-01D-A134-01 68070fb4-c52a-4d54-8775-07606efbf74c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G01_755818.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A14N TCGA-E2-A14N-10A TCGA-E2-A14N-10A-01D-A134-01 68070fb4-c52a-4d54-8775-07606efbf74c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G01_755818.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A14N TCGA-E2-A14N-10A TCGA-E2-A14N-10A-01D-A134-01 68070fb4-c52a-4d54-8775-07606efbf74c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G01_755818.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A14N TCGA-E2-A14N-10A TCGA-E2-A14N-10A-01D-A134-01 68070fb4-c52a-4d54-8775-07606efbf74c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G01_755818.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-E2-A14N TCGA-E2-A14N-10A TCGA-E2-A14N-10A-01D-A135-09 d2ad26e4-a4a8-45de-9f85-c681a2a49f43 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A14N TCGA-E2-A14N-10A TCGA-E2-A14N-10A-01D-A135-09 d2ad26e4-a4a8-45de-9f85-c681a2a49f43 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A14N TCGA-E2-A14N-10A TCGA-E2-A14N-10A-01W-A14P-09 6063385a-16fc-4287-beb9-4d9c777ad323 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14N.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31D-A10X-02 a15b9708-e053-46df-8a57-b08aa6f01368 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31D-A10Y-09 d6ab6f8d-0e65-40a3-bf98-7249e4075395 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31D-A10Y-09 d6ab6f8d-0e65-40a3-bf98-7249e4075395 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31D-A111-01 2def89d4-9863-4170-880b-4fec28a1465b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31D-A111-01 2def89d4-9863-4170-880b-4fec28a1465b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D06_735366.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31D-A111-01 2def89d4-9863-4170-880b-4fec28a1465b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D06_735366.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31D-A111-01 2def89d4-9863-4170-880b-4fec28a1465b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D06_735366.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31D-A111-01 2def89d4-9863-4170-880b-4fec28a1465b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D06_735366.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31D-A111-01 2def89d4-9863-4170-880b-4fec28a1465b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D06_735366.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31D-A111-01 2def89d4-9863-4170-880b-4fec28a1465b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D06_735366.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31D-A111-01 2def89d4-9863-4170-880b-4fec28a1465b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D06_735366.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31D-A111-01 2def89d4-9863-4170-880b-4fec28a1465b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D06_735366.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31D-A112-05 edf7c454-0631-4cfc-a5e3-1000298dac03 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31D-A112-05 edf7c454-0631-4cfc-a5e3-1000298dac03 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-E2-A14O-01A-31D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31D-A112-05 edf7c454-0631-4cfc-a5e3-1000298dac03 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-E2-A14O-01A-31D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31D-A112-05 edf7c454-0631-4cfc-a5e3-1000298dac03 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-E2-A14O-01A-31D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31R-A114-13 c252afb1-aa29-48b3-bdc4-bc4c280cc3fb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31R-A114-13 c252afb1-aa29-48b3-bdc4-bc4c280cc3fb miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A14O-01A-31R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31R-A114-13 c252afb1-aa29-48b3-bdc4-bc4c280cc3fb miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A14O-01A-31R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31R-A115-07 2791089c-f659-41e8-8e18-57fc6a079e6b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31R-A115-07 2791089c-f659-41e8-8e18-57fc6a079e6b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012838_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31R-A115-07 2791089c-f659-41e8-8e18-57fc6a079e6b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012838_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31R-A115-07 2791089c-f659-41e8-8e18-57fc6a079e6b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012838_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31R-A115-07 2791089c-f659-41e8-8e18-57fc6a079e6b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_409451.TCGA-E2-A14O-01A-31R-A115-07.110628_UNC10-SN254_0239_BD0CTRABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31R-A115-07 2791089c-f659-41e8-8e18-57fc6a079e6b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_409482.TCGA-E2-A14O-01A-31R-A115-07.110628_UNC10-SN254_0239_BD0CTRABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31R-A115-07 2791089c-f659-41e8-8e18-57fc6a079e6b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_409506.TCGA-E2-A14O-01A-31R-A115-07.110628_UNC10-SN254_0239_BD0CTRABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14O TCGA-E2-A14O-01A TCGA-E2-A14O-01A-31W-A12T-09 d8d4a610-0f29-49ed-ac95-c8c1dd4c2921 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14O TCGA-E2-A14O-10A TCGA-E2-A14O-10A-01D-A10Z-02 120ba18f-ce93-4e61-b7b6-1e3f7f25a02d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14O TCGA-E2-A14O-10A TCGA-E2-A14O-10A-01D-A110-09 3315cbc2-91d3-407d-b030-0d20dc9f4aff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14O TCGA-E2-A14O-10A TCGA-E2-A14O-10A-01D-A110-09 3315cbc2-91d3-407d-b030-0d20dc9f4aff Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A14O TCGA-E2-A14O-10A TCGA-E2-A14O-10A-01D-A113-01 7c0f2458-46c6-4db2-bc3c-543eca6e3cd4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14O TCGA-E2-A14O-10A TCGA-E2-A14O-10A-01W-A12U-09 e76c6151-7941-4657-87af-066a3f0d3daf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31D-A129-02 39e429f9-eb81-4227-a2a2-9929ea430007 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31D-A12A-01 32d3f1cd-077f-43bf-843e-1fe9f0ec0cba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31D-A12A-01 32d3f1cd-077f-43bf-843e-1fe9f0ec0cba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A10_741498.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31D-A12A-01 32d3f1cd-077f-43bf-843e-1fe9f0ec0cba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A10_741498.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31D-A12A-01 32d3f1cd-077f-43bf-843e-1fe9f0ec0cba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A10_741498.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31D-A12A-01 32d3f1cd-077f-43bf-843e-1fe9f0ec0cba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A10_741498.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31D-A12A-01 32d3f1cd-077f-43bf-843e-1fe9f0ec0cba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A10_741498.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31D-A12A-01 32d3f1cd-077f-43bf-843e-1fe9f0ec0cba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A10_741498.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31D-A12A-01 32d3f1cd-077f-43bf-843e-1fe9f0ec0cba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A10_741498.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31D-A12A-01 32d3f1cd-077f-43bf-843e-1fe9f0ec0cba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A10_741498.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31D-A12B-09 35a96eee-113b-45cb-a999-81c13545b104 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31D-A12B-09 35a96eee-113b-45cb-a999-81c13545b104 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31D-A12E-05 4608c8c3-a5d1-4a03-b8b8-d1e4341f4171 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31D-A12E-05 4608c8c3-a5d1-4a03-b8b8-d1e4341f4171 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-E2-A14P-01A-31D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31D-A12E-05 4608c8c3-a5d1-4a03-b8b8-d1e4341f4171 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-E2-A14P-01A-31D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31D-A12E-05 4608c8c3-a5d1-4a03-b8b8-d1e4341f4171 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-E2-A14P-01A-31D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31D-A19H-09 74b57d2c-a83f-4798-b86b-a533975e4cc0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31R-A12C-13 ca873053-9757-46c1-977e-b05df5bcde28 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31R-A12C-13 ca873053-9757-46c1-977e-b05df5bcde28 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A14P-01A-31R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31R-A12C-13 ca873053-9757-46c1-977e-b05df5bcde28 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A14P-01A-31R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31R-A12D-07 a4cb04f5-91b3-40ba-8005-b1df46d6b555 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31R-A12D-07 a4cb04f5-91b3-40ba-8005-b1df46d6b555 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012933_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31R-A12D-07 a4cb04f5-91b3-40ba-8005-b1df46d6b555 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012933_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31R-A12D-07 a4cb04f5-91b3-40ba-8005-b1df46d6b555 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012933_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31R-A12D-07 a4cb04f5-91b3-40ba-8005-b1df46d6b555 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_704955.TCGA-E2-A14P-01A-31R-A12D-07.110714_UNC13-SN749_0083_BD0DLNABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31R-A12D-07 a4cb04f5-91b3-40ba-8005-b1df46d6b555 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_704971.TCGA-E2-A14P-01A-31R-A12D-07.110714_UNC13-SN749_0083_BD0DLNABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31R-A12D-07 a4cb04f5-91b3-40ba-8005-b1df46d6b555 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_705043.TCGA-E2-A14P-01A-31R-A12D-07.110714_UNC13-SN749_0083_BD0DLNABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14P TCGA-E2-A14P-01A TCGA-E2-A14P-01A-31W-A12S-09 61cdd392-aadc-41b9-a5dd-abdb80fb8378 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14P TCGA-E2-A14P-10A TCGA-E2-A14P-10A-01D-A129-02 75220210-5266-42ba-8929-7dccf8812851 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14P TCGA-E2-A14P-10A TCGA-E2-A14P-10A-01D-A12A-01 03f2d564-924d-4f91-b7b2-5e34773376c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14P TCGA-E2-A14P-10A TCGA-E2-A14P-10A-01D-A12A-01 03f2d564-924d-4f91-b7b2-5e34773376c9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A11_741394.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A14P TCGA-E2-A14P-10A TCGA-E2-A14P-10A-01D-A12A-01 03f2d564-924d-4f91-b7b2-5e34773376c9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A11_741394.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14P TCGA-E2-A14P-10A TCGA-E2-A14P-10A-01D-A12A-01 03f2d564-924d-4f91-b7b2-5e34773376c9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A11_741394.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14P TCGA-E2-A14P-10A TCGA-E2-A14P-10A-01D-A12A-01 03f2d564-924d-4f91-b7b2-5e34773376c9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A11_741394.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14P TCGA-E2-A14P-10A TCGA-E2-A14P-10A-01D-A12A-01 03f2d564-924d-4f91-b7b2-5e34773376c9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A11_741394.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14P TCGA-E2-A14P-10A TCGA-E2-A14P-10A-01D-A12A-01 03f2d564-924d-4f91-b7b2-5e34773376c9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A11_741394.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14P TCGA-E2-A14P-10A TCGA-E2-A14P-10A-01D-A12A-01 03f2d564-924d-4f91-b7b2-5e34773376c9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A11_741394.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14P TCGA-E2-A14P-10A TCGA-E2-A14P-10A-01D-A12A-01 03f2d564-924d-4f91-b7b2-5e34773376c9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A11_741394.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A14P TCGA-E2-A14P-10A TCGA-E2-A14P-10A-01D-A12B-09 ddf38d71-5acf-4b09-9796-d26fa1089daa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14P TCGA-E2-A14P-10A TCGA-E2-A14P-10A-01D-A12B-09 ddf38d71-5acf-4b09-9796-d26fa1089daa Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A14P TCGA-E2-A14P-10A TCGA-E2-A14P-10A-01D-A19H-09 45561da8-6073-4f1d-9cfc-b627516d1242 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14P TCGA-E2-A14P-10A TCGA-E2-A14P-10A-01W-A12S-09 7342f608-c768-45a6-b49a-6689772e82c6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11D-A129-02 b2624291-d252-4bfa-995d-5124576e56f2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11D-A12A-01 d897dae1-1649-463c-aba4-e93fae68c5e8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11D-A12A-01 d897dae1-1649-463c-aba4-e93fae68c5e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F02_741574.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11D-A12A-01 d897dae1-1649-463c-aba4-e93fae68c5e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F02_741574.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11D-A12A-01 d897dae1-1649-463c-aba4-e93fae68c5e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F02_741574.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11D-A12A-01 d897dae1-1649-463c-aba4-e93fae68c5e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F02_741574.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11D-A12A-01 d897dae1-1649-463c-aba4-e93fae68c5e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F02_741574.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11D-A12A-01 d897dae1-1649-463c-aba4-e93fae68c5e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F02_741574.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11D-A12A-01 d897dae1-1649-463c-aba4-e93fae68c5e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F02_741574.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11D-A12A-01 d897dae1-1649-463c-aba4-e93fae68c5e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F02_741574.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11D-A12B-09 ee51cf6d-351f-48f8-ab93-639c27c50e9f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11D-A12B-09 ee51cf6d-351f-48f8-ab93-639c27c50e9f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11D-A12E-05 11de1bb4-46e8-4171-a69a-606dde9b22ca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11D-A12E-05 11de1bb4-46e8-4171-a69a-606dde9b22ca DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-E2-A14Q-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11D-A12E-05 11de1bb4-46e8-4171-a69a-606dde9b22ca DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-E2-A14Q-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11D-A12E-05 11de1bb4-46e8-4171-a69a-606dde9b22ca DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-E2-A14Q-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11R-A12C-13 460e87f8-7809-4d1f-bd76-465038107146 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11R-A12C-13 460e87f8-7809-4d1f-bd76-465038107146 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A14Q-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11R-A12C-13 460e87f8-7809-4d1f-bd76-465038107146 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A14Q-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11R-A12D-07 48d70a9a-b6ae-4ed6-80da-999a919f8da9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11R-A12D-07 48d70a9a-b6ae-4ed6-80da-999a919f8da9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012867_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11R-A12D-07 48d70a9a-b6ae-4ed6-80da-999a919f8da9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012867_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11R-A12D-07 48d70a9a-b6ae-4ed6-80da-999a919f8da9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012867_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11R-A12D-07 48d70a9a-b6ae-4ed6-80da-999a919f8da9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441174.TCGA-E2-A14Q-01A-11R-A12D-07.110629_UNC15-SN850_0090_AC03J3ABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11R-A12D-07 48d70a9a-b6ae-4ed6-80da-999a919f8da9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441198.TCGA-E2-A14Q-01A-11R-A12D-07.110629_UNC15-SN850_0090_AC03J3ABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11R-A12D-07 48d70a9a-b6ae-4ed6-80da-999a919f8da9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441218.TCGA-E2-A14Q-01A-11R-A12D-07.110629_UNC15-SN850_0090_AC03J3ABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-01A TCGA-E2-A14Q-01A-11W-A12S-09 80cb4a74-5cab-4051-aca1-fd02d6d06489 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-10A TCGA-E2-A14Q-10A-01D-A129-02 189e3ce6-1487-4844-adb1-f7b9a14cb33e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-10A TCGA-E2-A14Q-10A-01D-A12A-01 3062da88-bc89-4ec8-b3ad-34fa5ce0d7bb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-10A TCGA-E2-A14Q-10A-01D-A12A-01 3062da88-bc89-4ec8-b3ad-34fa5ce0d7bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F04_741576.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A14Q TCGA-E2-A14Q-10A TCGA-E2-A14Q-10A-01D-A12A-01 3062da88-bc89-4ec8-b3ad-34fa5ce0d7bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F04_741576.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-10A TCGA-E2-A14Q-10A-01D-A12A-01 3062da88-bc89-4ec8-b3ad-34fa5ce0d7bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F04_741576.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-10A TCGA-E2-A14Q-10A-01D-A12A-01 3062da88-bc89-4ec8-b3ad-34fa5ce0d7bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F04_741576.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-10A TCGA-E2-A14Q-10A-01D-A12A-01 3062da88-bc89-4ec8-b3ad-34fa5ce0d7bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F04_741576.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-10A TCGA-E2-A14Q-10A-01D-A12A-01 3062da88-bc89-4ec8-b3ad-34fa5ce0d7bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F04_741576.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-10A TCGA-E2-A14Q-10A-01D-A12A-01 3062da88-bc89-4ec8-b3ad-34fa5ce0d7bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F04_741576.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-10A TCGA-E2-A14Q-10A-01D-A12A-01 3062da88-bc89-4ec8-b3ad-34fa5ce0d7bb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F04_741576.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-10A TCGA-E2-A14Q-10A-01D-A12B-09 323a490c-8dd7-4715-b083-f238c565b60d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-10A TCGA-E2-A14Q-10A-01D-A12B-09 323a490c-8dd7-4715-b083-f238c565b60d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A14Q TCGA-E2-A14Q-10A TCGA-E2-A14Q-10A-01W-A12S-09 442e67cb-c624-4705-ac89-320df3c82f4b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Q.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11D-A10X-02 6d30496f-a595-4c9e-9e86-ef80f7f785a4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11D-A10Y-09 c7212115-1007-40cf-b9b5-7b25e2f5f2a4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11D-A10Y-09 c7212115-1007-40cf-b9b5-7b25e2f5f2a4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11D-A111-01 fbf955e5-ed36-4f3a-b8e0-fb63dbb7543d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11D-A111-01 fbf955e5-ed36-4f3a-b8e0-fb63dbb7543d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A12_735376.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11D-A111-01 fbf955e5-ed36-4f3a-b8e0-fb63dbb7543d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A12_735376.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11D-A111-01 fbf955e5-ed36-4f3a-b8e0-fb63dbb7543d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A12_735376.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11D-A111-01 fbf955e5-ed36-4f3a-b8e0-fb63dbb7543d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A12_735376.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11D-A111-01 fbf955e5-ed36-4f3a-b8e0-fb63dbb7543d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A12_735376.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11D-A111-01 fbf955e5-ed36-4f3a-b8e0-fb63dbb7543d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A12_735376.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11D-A111-01 fbf955e5-ed36-4f3a-b8e0-fb63dbb7543d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A12_735376.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11D-A111-01 fbf955e5-ed36-4f3a-b8e0-fb63dbb7543d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A12_735376.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11D-A112-05 0a08334d-5cc7-4f2e-b311-80c53d284575 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11D-A112-05 0a08334d-5cc7-4f2e-b311-80c53d284575 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-E2-A14R-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11D-A112-05 0a08334d-5cc7-4f2e-b311-80c53d284575 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-E2-A14R-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11D-A112-05 0a08334d-5cc7-4f2e-b311-80c53d284575 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-E2-A14R-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11R-A114-13 2df8967f-c6a2-4281-a453-7286a9572508 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11R-A114-13 2df8967f-c6a2-4281-a453-7286a9572508 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A14R-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11R-A114-13 2df8967f-c6a2-4281-a453-7286a9572508 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A14R-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11R-A115-07 76a625e9-22b3-42b8-8813-27c133d0b248 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11R-A115-07 76a625e9-22b3-42b8-8813-27c133d0b248 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012750_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11R-A115-07 76a625e9-22b3-42b8-8813-27c133d0b248 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012750_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11R-A115-07 76a625e9-22b3-42b8-8813-27c133d0b248 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012750_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11R-A115-07 76a625e9-22b3-42b8-8813-27c133d0b248 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420454.TCGA-E2-A14R-01A-11R-A115-07.110608_UNC11-SN627_0103_BD0CVVABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11R-A115-07 76a625e9-22b3-42b8-8813-27c133d0b248 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420461.TCGA-E2-A14R-01A-11R-A115-07.110608_UNC11-SN627_0103_BD0CVVABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11R-A115-07 76a625e9-22b3-42b8-8813-27c133d0b248 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420486.TCGA-E2-A14R-01A-11R-A115-07.110608_UNC11-SN627_0103_BD0CVVABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14R TCGA-E2-A14R-01A TCGA-E2-A14R-01A-11W-A12T-09 70d635c4-2136-4591-b30b-808756de76f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14R TCGA-E2-A14R-10A TCGA-E2-A14R-10A-01D-A10Z-02 e5413e50-0107-44f9-8434-430f71953d97 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14R TCGA-E2-A14R-10A TCGA-E2-A14R-10A-01D-A110-09 7b38de28-3b9d-4a67-bf94-5fd17317d1a9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14R TCGA-E2-A14R-10A TCGA-E2-A14R-10A-01D-A110-09 7b38de28-3b9d-4a67-bf94-5fd17317d1a9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A14R TCGA-E2-A14R-10A TCGA-E2-A14R-10A-01D-A113-01 4279096a-3f6d-4974-abb0-05b0aceda594 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14R TCGA-E2-A14R-10A TCGA-E2-A14R-10A-01W-A12U-09 45b762e1-9ac0-44f0-8046-a57f2e418244 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11D-A129-02 d3bea3f1-09d8-4075-8f2d-4580c9622a21 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11D-A12A-01 48a87c28-38ea-4e10-b545-b3b55caf3225 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11D-A12A-01 48a87c28-38ea-4e10-b545-b3b55caf3225 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F07_741402.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11D-A12A-01 48a87c28-38ea-4e10-b545-b3b55caf3225 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F07_741402.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11D-A12A-01 48a87c28-38ea-4e10-b545-b3b55caf3225 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F07_741402.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11D-A12A-01 48a87c28-38ea-4e10-b545-b3b55caf3225 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F07_741402.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11D-A12A-01 48a87c28-38ea-4e10-b545-b3b55caf3225 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F07_741402.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11D-A12A-01 48a87c28-38ea-4e10-b545-b3b55caf3225 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F07_741402.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11D-A12A-01 48a87c28-38ea-4e10-b545-b3b55caf3225 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F07_741402.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11D-A12A-01 48a87c28-38ea-4e10-b545-b3b55caf3225 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F07_741402.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11D-A12B-09 78f39325-e1d0-4181-87f4-cb7f00e886d7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11D-A12B-09 78f39325-e1d0-4181-87f4-cb7f00e886d7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11D-A12E-05 293b2161-162c-4eb2-9be7-c2952114a9a3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11D-A12E-05 293b2161-162c-4eb2-9be7-c2952114a9a3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-E2-A14S-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11D-A12E-05 293b2161-162c-4eb2-9be7-c2952114a9a3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-E2-A14S-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11D-A12E-05 293b2161-162c-4eb2-9be7-c2952114a9a3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-E2-A14S-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11R-A12C-13 6eafcfa2-8bde-4935-9506-af3ea6996a31 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11R-A12C-13 6eafcfa2-8bde-4935-9506-af3ea6996a31 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A14S-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11R-A12C-13 6eafcfa2-8bde-4935-9506-af3ea6996a31 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A14S-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11R-A12D-07 5aaf8edc-5d66-4099-824b-f4e06827ad12 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11R-A12D-07 5aaf8edc-5d66-4099-824b-f4e06827ad12 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012875_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11R-A12D-07 5aaf8edc-5d66-4099-824b-f4e06827ad12 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012875_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11R-A12D-07 5aaf8edc-5d66-4099-824b-f4e06827ad12 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012875_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11R-A12D-07 5aaf8edc-5d66-4099-824b-f4e06827ad12 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441200.TCGA-E2-A14S-01A-11R-A12D-07.110629_UNC15-SN850_0090_AC03J3ABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11R-A12D-07 5aaf8edc-5d66-4099-824b-f4e06827ad12 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441299.TCGA-E2-A14S-01A-11R-A12D-07.110629_UNC15-SN850_0090_AC03J3ABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11R-A12D-07 5aaf8edc-5d66-4099-824b-f4e06827ad12 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441305.TCGA-E2-A14S-01A-11R-A12D-07.110629_UNC15-SN850_0090_AC03J3ABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14S TCGA-E2-A14S-01A TCGA-E2-A14S-01A-11W-A12S-09 ddb7863f-228f-4a41-a0e6-fc1af48b4f86 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14S TCGA-E2-A14S-10A TCGA-E2-A14S-10A-01D-A129-02 acf36b76-a389-4f97-87d6-61fdb09ae03b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14S TCGA-E2-A14S-10A TCGA-E2-A14S-10A-01D-A12A-01 e4a3c820-d0e4-47f5-9aea-038e6f8198b6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14S TCGA-E2-A14S-10A TCGA-E2-A14S-10A-01D-A12A-01 e4a3c820-d0e4-47f5-9aea-038e6f8198b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H09_741396.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A14S TCGA-E2-A14S-10A TCGA-E2-A14S-10A-01D-A12A-01 e4a3c820-d0e4-47f5-9aea-038e6f8198b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H09_741396.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14S TCGA-E2-A14S-10A TCGA-E2-A14S-10A-01D-A12A-01 e4a3c820-d0e4-47f5-9aea-038e6f8198b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H09_741396.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14S TCGA-E2-A14S-10A TCGA-E2-A14S-10A-01D-A12A-01 e4a3c820-d0e4-47f5-9aea-038e6f8198b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H09_741396.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14S TCGA-E2-A14S-10A TCGA-E2-A14S-10A-01D-A12A-01 e4a3c820-d0e4-47f5-9aea-038e6f8198b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H09_741396.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14S TCGA-E2-A14S-10A TCGA-E2-A14S-10A-01D-A12A-01 e4a3c820-d0e4-47f5-9aea-038e6f8198b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H09_741396.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14S TCGA-E2-A14S-10A TCGA-E2-A14S-10A-01D-A12A-01 e4a3c820-d0e4-47f5-9aea-038e6f8198b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H09_741396.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14S TCGA-E2-A14S-10A TCGA-E2-A14S-10A-01D-A12A-01 e4a3c820-d0e4-47f5-9aea-038e6f8198b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H09_741396.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A14S TCGA-E2-A14S-10A TCGA-E2-A14S-10A-01D-A12B-09 5cfbabf6-5143-4dae-a386-25a208ba147f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14S TCGA-E2-A14S-10A TCGA-E2-A14S-10A-01D-A12B-09 5cfbabf6-5143-4dae-a386-25a208ba147f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A14S TCGA-E2-A14S-10A TCGA-E2-A14S-10A-01W-A12S-09 9915e8a4-7119-4b5e-9112-5cdde158fefe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14T TCGA-E2-A14T-01A TCGA-E2-A14T-01A-11D-A10X-02 c5032201-534a-46ba-b11a-ac83e2824e46 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14T TCGA-E2-A14T-01A TCGA-E2-A14T-01A-11D-A10Y-09 14c1c6b6-575e-416b-b219-15552b62ea74 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14T TCGA-E2-A14T-01A TCGA-E2-A14T-01A-11D-A10Y-09 14c1c6b6-575e-416b-b219-15552b62ea74 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A14T TCGA-E2-A14T-01A TCGA-E2-A14T-01A-11D-A111-01 e0629d66-17b1-4abb-beff-7b459b373089 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14T TCGA-E2-A14T-01A TCGA-E2-A14T-01A-11D-A112-05 ed67c293-61ff-4eb8-bf99-f1d8ae0c3fc2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14T TCGA-E2-A14T-01A TCGA-E2-A14T-01A-11D-A112-05 ed67c293-61ff-4eb8-bf99-f1d8ae0c3fc2 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-E2-A14T-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-E2-A14T TCGA-E2-A14T-01A TCGA-E2-A14T-01A-11D-A112-05 ed67c293-61ff-4eb8-bf99-f1d8ae0c3fc2 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-E2-A14T-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-E2-A14T TCGA-E2-A14T-01A TCGA-E2-A14T-01A-11D-A112-05 ed67c293-61ff-4eb8-bf99-f1d8ae0c3fc2 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-E2-A14T-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-E2-A14T TCGA-E2-A14T-01A TCGA-E2-A14T-01A-11R-A114-13 14e03688-4148-4e11-b2b0-439eac1c0ffe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14T TCGA-E2-A14T-01A TCGA-E2-A14T-01A-11R-A114-13 14e03688-4148-4e11-b2b0-439eac1c0ffe miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A14T-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A14T TCGA-E2-A14T-01A TCGA-E2-A14T-01A-11R-A114-13 14e03688-4148-4e11-b2b0-439eac1c0ffe miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A14T-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A14T TCGA-E2-A14T-01A TCGA-E2-A14T-01A-11R-A115-07 7aa46530-2311-41ed-a452-9ca06f38c0c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14T TCGA-E2-A14T-01A TCGA-E2-A14T-01A-11R-A115-07 7aa46530-2311-41ed-a452-9ca06f38c0c1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012767_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-E2-A14T TCGA-E2-A14T-01A TCGA-E2-A14T-01A-11R-A115-07 7aa46530-2311-41ed-a452-9ca06f38c0c1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012767_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-E2-A14T TCGA-E2-A14T-01A TCGA-E2-A14T-01A-11R-A115-07 7aa46530-2311-41ed-a452-9ca06f38c0c1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012767_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-E2-A14T TCGA-E2-A14T-01A TCGA-E2-A14T-01A-11R-A115-07 7aa46530-2311-41ed-a452-9ca06f38c0c1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_411048.TCGA-E2-A14T-01A-11R-A115-07.110607_UNC14-SN744_0124_AD0CVCABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14T TCGA-E2-A14T-01A TCGA-E2-A14T-01A-11R-A115-07 7aa46530-2311-41ed-a452-9ca06f38c0c1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_411076.TCGA-E2-A14T-01A-11R-A115-07.110607_UNC14-SN744_0124_AD0CVCABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14T TCGA-E2-A14T-01A TCGA-E2-A14T-01A-11R-A115-07 7aa46530-2311-41ed-a452-9ca06f38c0c1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_411146.TCGA-E2-A14T-01A-11R-A115-07.110607_UNC14-SN744_0124_AD0CVCABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14T TCGA-E2-A14T-01A TCGA-E2-A14T-01A-11W-A12T-09 6e2608c6-0628-4e05-957f-e6da839edd35 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14T TCGA-E2-A14T-10A TCGA-E2-A14T-10A-01D-A10Z-02 d781e312-84c1-4cd0-8251-8d8ee2df6ab2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14T TCGA-E2-A14T-10A TCGA-E2-A14T-10A-01D-A110-09 8e0edd30-4ae0-4245-bd91-0ae937ae0599 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14T TCGA-E2-A14T-10A TCGA-E2-A14T-10A-01D-A110-09 8e0edd30-4ae0-4245-bd91-0ae937ae0599 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A14T TCGA-E2-A14T-10A TCGA-E2-A14T-10A-01D-A113-01 2c58a2b6-0e7e-40d6-9a86-5ba86f3e2899 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14T TCGA-E2-A14T-10A TCGA-E2-A14T-10A-01D-A113-01 2c58a2b6-0e7e-40d6-9a86-5ba86f3e2899 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A06_735260.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-E2-A14T TCGA-E2-A14T-10A TCGA-E2-A14T-10A-01D-A113-01 2c58a2b6-0e7e-40d6-9a86-5ba86f3e2899 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A06_735260.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14T TCGA-E2-A14T-10A TCGA-E2-A14T-10A-01D-A113-01 2c58a2b6-0e7e-40d6-9a86-5ba86f3e2899 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A06_735260.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14T TCGA-E2-A14T-10A TCGA-E2-A14T-10A-01D-A113-01 2c58a2b6-0e7e-40d6-9a86-5ba86f3e2899 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A06_735260.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14T TCGA-E2-A14T-10A TCGA-E2-A14T-10A-01D-A113-01 2c58a2b6-0e7e-40d6-9a86-5ba86f3e2899 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A06_735260.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14T TCGA-E2-A14T-10A TCGA-E2-A14T-10A-01D-A113-01 2c58a2b6-0e7e-40d6-9a86-5ba86f3e2899 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A06_735260.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14T TCGA-E2-A14T-10A TCGA-E2-A14T-10A-01D-A113-01 2c58a2b6-0e7e-40d6-9a86-5ba86f3e2899 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A06_735260.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14T TCGA-E2-A14T-10A TCGA-E2-A14T-10A-01D-A113-01 2c58a2b6-0e7e-40d6-9a86-5ba86f3e2899 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A06_735260.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-E2-A14T TCGA-E2-A14T-10A TCGA-E2-A14T-10A-01W-A12U-09 32f0dae8-12e6-465b-80e0-aa93a2aa6b72 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11D-A129-02 270b8174-b768-49b5-968e-0177eefe80da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11D-A12A-01 83803fb6-49a3-46a2-a927-657c4733337a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11D-A12A-01 83803fb6-49a3-46a2-a927-657c4733337a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B01_741514.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11D-A12A-01 83803fb6-49a3-46a2-a927-657c4733337a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B01_741514.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11D-A12A-01 83803fb6-49a3-46a2-a927-657c4733337a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B01_741514.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11D-A12A-01 83803fb6-49a3-46a2-a927-657c4733337a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B01_741514.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11D-A12A-01 83803fb6-49a3-46a2-a927-657c4733337a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B01_741514.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11D-A12A-01 83803fb6-49a3-46a2-a927-657c4733337a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B01_741514.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11D-A12A-01 83803fb6-49a3-46a2-a927-657c4733337a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B01_741514.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11D-A12A-01 83803fb6-49a3-46a2-a927-657c4733337a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B01_741514.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11D-A12B-09 703314fe-bfd5-45d5-9ed5-fcdce8a19fd6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11D-A12B-09 703314fe-bfd5-45d5-9ed5-fcdce8a19fd6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11D-A12E-05 c658107b-5006-4ced-9bb7-4984ee3fb703 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11D-A12E-05 c658107b-5006-4ced-9bb7-4984ee3fb703 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-E2-A14V-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11D-A12E-05 c658107b-5006-4ced-9bb7-4984ee3fb703 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-E2-A14V-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11D-A12E-05 c658107b-5006-4ced-9bb7-4984ee3fb703 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-E2-A14V-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11R-A12C-13 c1793f7c-9ba7-4b11-be94-1af31a57fed9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11R-A12C-13 c1793f7c-9ba7-4b11-be94-1af31a57fed9 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A14V-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11R-A12C-13 c1793f7c-9ba7-4b11-be94-1af31a57fed9 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A14V-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11R-A12D-07 d6f0abd0-ff39-4c30-a8ee-e74e6f3621bf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11R-A12D-07 d6f0abd0-ff39-4c30-a8ee-e74e6f3621bf Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012883_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11R-A12D-07 d6f0abd0-ff39-4c30-a8ee-e74e6f3621bf Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012883_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11R-A12D-07 d6f0abd0-ff39-4c30-a8ee-e74e6f3621bf Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012883_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11R-A12D-07 d6f0abd0-ff39-4c30-a8ee-e74e6f3621bf RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439584.TCGA-E2-A14V-01A-11R-A12D-07.110715_UNC10-SN254_0245_BD0DG6ABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11R-A12D-07 d6f0abd0-ff39-4c30-a8ee-e74e6f3621bf RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439596.TCGA-E2-A14V-01A-11R-A12D-07.110715_UNC10-SN254_0245_BD0DG6ABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11R-A12D-07 d6f0abd0-ff39-4c30-a8ee-e74e6f3621bf RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439660.TCGA-E2-A14V-01A-11R-A12D-07.110715_UNC10-SN254_0245_BD0DG6ABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14V TCGA-E2-A14V-01A TCGA-E2-A14V-01A-11W-A12S-09 9a52e6b9-5d32-4341-9ad5-6c622c26a52f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14V TCGA-E2-A14V-10A TCGA-E2-A14V-10A-01D-A129-02 74eeea9d-8b92-43eb-a107-2e74306a1ec5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14V TCGA-E2-A14V-10A TCGA-E2-A14V-10A-01D-A12A-01 545495d1-c4a5-45d2-baf6-5ae9b3b7ec33 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14V TCGA-E2-A14V-10A TCGA-E2-A14V-10A-01D-A12A-01 545495d1-c4a5-45d2-baf6-5ae9b3b7ec33 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G04_741546.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A14V TCGA-E2-A14V-10A TCGA-E2-A14V-10A-01D-A12A-01 545495d1-c4a5-45d2-baf6-5ae9b3b7ec33 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G04_741546.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14V TCGA-E2-A14V-10A TCGA-E2-A14V-10A-01D-A12A-01 545495d1-c4a5-45d2-baf6-5ae9b3b7ec33 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G04_741546.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14V TCGA-E2-A14V-10A TCGA-E2-A14V-10A-01D-A12A-01 545495d1-c4a5-45d2-baf6-5ae9b3b7ec33 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G04_741546.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14V TCGA-E2-A14V-10A TCGA-E2-A14V-10A-01D-A12A-01 545495d1-c4a5-45d2-baf6-5ae9b3b7ec33 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G04_741546.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14V TCGA-E2-A14V-10A TCGA-E2-A14V-10A-01D-A12A-01 545495d1-c4a5-45d2-baf6-5ae9b3b7ec33 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G04_741546.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14V TCGA-E2-A14V-10A TCGA-E2-A14V-10A-01D-A12A-01 545495d1-c4a5-45d2-baf6-5ae9b3b7ec33 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G04_741546.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14V TCGA-E2-A14V-10A TCGA-E2-A14V-10A-01D-A12A-01 545495d1-c4a5-45d2-baf6-5ae9b3b7ec33 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G04_741546.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A14V TCGA-E2-A14V-10A TCGA-E2-A14V-10A-01D-A12B-09 e49f6bc1-0933-4500-9068-aa7d8c276b22 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14V TCGA-E2-A14V-10A TCGA-E2-A14V-10A-01D-A12B-09 e49f6bc1-0933-4500-9068-aa7d8c276b22 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A14V TCGA-E2-A14V-10A TCGA-E2-A14V-10A-01W-A12S-09 f613a3de-c0d2-4e14-b2f5-2c592f3b3930 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14V.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11D-A129-02 3f79d223-afbe-41df-8e66-7045ffac0843 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11D-A12A-01 77d07305-dbcf-4795-9f23-e69fc65b04b1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11D-A12A-01 77d07305-dbcf-4795-9f23-e69fc65b04b1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D07_741570.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11D-A12A-01 77d07305-dbcf-4795-9f23-e69fc65b04b1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D07_741570.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11D-A12A-01 77d07305-dbcf-4795-9f23-e69fc65b04b1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D07_741570.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11D-A12A-01 77d07305-dbcf-4795-9f23-e69fc65b04b1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D07_741570.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11D-A12A-01 77d07305-dbcf-4795-9f23-e69fc65b04b1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D07_741570.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11D-A12A-01 77d07305-dbcf-4795-9f23-e69fc65b04b1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D07_741570.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11D-A12A-01 77d07305-dbcf-4795-9f23-e69fc65b04b1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D07_741570.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11D-A12A-01 77d07305-dbcf-4795-9f23-e69fc65b04b1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D07_741570.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11D-A12B-09 fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11D-A12B-09 fbdc8659-e9cc-483f-bd0a-1a24b5ada1cf Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11D-A12E-05 2e62dd04-5ba2-4a86-a49b-9d5750712720 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11D-A12E-05 2e62dd04-5ba2-4a86-a49b-9d5750712720 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-E2-A14W-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11D-A12E-05 2e62dd04-5ba2-4a86-a49b-9d5750712720 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-E2-A14W-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11D-A12E-05 2e62dd04-5ba2-4a86-a49b-9d5750712720 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-E2-A14W-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11R-A12C-13 77110a55-b62b-4c2c-98e5-5f96c393c124 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11R-A12C-13 77110a55-b62b-4c2c-98e5-5f96c393c124 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A14W-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11R-A12C-13 77110a55-b62b-4c2c-98e5-5f96c393c124 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A14W-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11R-A12D-07 f898f44d-a728-41cf-b1ac-20b1995a86b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11R-A12D-07 f898f44d-a728-41cf-b1ac-20b1995a86b9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012892_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11R-A12D-07 f898f44d-a728-41cf-b1ac-20b1995a86b9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012892_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11R-A12D-07 f898f44d-a728-41cf-b1ac-20b1995a86b9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012892_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11R-A12D-07 f898f44d-a728-41cf-b1ac-20b1995a86b9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437505.TCGA-E2-A14W-01A-11R-A12D-07.110718_UNC12-SN629_0110_AB0AR8ABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11R-A12D-07 f898f44d-a728-41cf-b1ac-20b1995a86b9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437542.TCGA-E2-A14W-01A-11R-A12D-07.110718_UNC12-SN629_0110_AB0AR8ABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11R-A12D-07 f898f44d-a728-41cf-b1ac-20b1995a86b9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437614.TCGA-E2-A14W-01A-11R-A12D-07.110718_UNC12-SN629_0110_AB0AR8ABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14W TCGA-E2-A14W-01A TCGA-E2-A14W-01A-11W-A12S-09 99ebbd2e-35ea-4a8c-b5c3-4589a99815bd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14W TCGA-E2-A14W-10A TCGA-E2-A14W-10A-01D-A129-02 d8c45c6f-9270-49e7-ab66-8ec7405a17a8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14W TCGA-E2-A14W-10A TCGA-E2-A14W-10A-01D-A12A-01 45b6aee4-7178-47ae-9cb4-22a434f6e943 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D10_741440.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D10_741440.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D10_741440.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D10_741440.ismpolish.data.txt'. TCGA-E2-A14W TCGA-E2-A14W-10A TCGA-E2-A14W-10A-01D-A12A-01 45b6aee4-7178-47ae-9cb4-22a434f6e943 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D10_741440.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D10_741440.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D10_741440.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D10_741440.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D10_741440.ismpolish.data.txt'. TCGA-E2-A14W TCGA-E2-A14W-10A TCGA-E2-A14W-10A-01D-A12A-01 45b6aee4-7178-47ae-9cb4-22a434f6e943 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D10_741440.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D10_741440.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D10_741440.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D10_741440.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D10_741440.ismpolish.data.txt'. TCGA-E2-A14W TCGA-E2-A14W-10A TCGA-E2-A14W-10A-01D-A12B-09 7dfbdd33-5e89-45ef-a636-fe72cc25f3b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14W TCGA-E2-A14W-10A TCGA-E2-A14W-10A-01D-A12B-09 7dfbdd33-5e89-45ef-a636-fe72cc25f3b9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A14W TCGA-E2-A14W-10A TCGA-E2-A14W-10A-01W-A12S-09 c60c819c-acf5-4eca-ba46-1b9621fd7666 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14W.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11D-A10X-02 0c10280c-1380-48dd-a5b8-0c3916c91d59 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11D-A10Y-09 74039acd-5aca-4c65-818c-3b577d295be0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11D-A10Y-09 74039acd-5aca-4c65-818c-3b577d295be0 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11D-A111-01 83255030-c4f5-48ed-829b-3b06dd57adbb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11D-A111-01 83255030-c4f5-48ed-829b-3b06dd57adbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E02_735270.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11D-A111-01 83255030-c4f5-48ed-829b-3b06dd57adbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E02_735270.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11D-A111-01 83255030-c4f5-48ed-829b-3b06dd57adbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E02_735270.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11D-A111-01 83255030-c4f5-48ed-829b-3b06dd57adbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E02_735270.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11D-A111-01 83255030-c4f5-48ed-829b-3b06dd57adbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E02_735270.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11D-A111-01 83255030-c4f5-48ed-829b-3b06dd57adbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E02_735270.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11D-A111-01 83255030-c4f5-48ed-829b-3b06dd57adbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E02_735270.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11D-A111-01 83255030-c4f5-48ed-829b-3b06dd57adbb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E02_735270.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11D-A112-05 27c5cd26-4a74-47d3-a00d-15a22ee9b8c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11D-A112-05 27c5cd26-4a74-47d3-a00d-15a22ee9b8c1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-E2-A14X-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11D-A112-05 27c5cd26-4a74-47d3-a00d-15a22ee9b8c1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-E2-A14X-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11D-A112-05 27c5cd26-4a74-47d3-a00d-15a22ee9b8c1 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-E2-A14X-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11R-A114-13 8fbcb056-c53b-4f64-90d5-3ddbfcb0c8f1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11R-A114-13 8fbcb056-c53b-4f64-90d5-3ddbfcb0c8f1 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A14X-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11R-A114-13 8fbcb056-c53b-4f64-90d5-3ddbfcb0c8f1 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A14X-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11R-A115-07 d9f827bb-2498-49b0-aa85-71cb554eb926 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11R-A115-07 d9f827bb-2498-49b0-aa85-71cb554eb926 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012779_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11R-A115-07 d9f827bb-2498-49b0-aa85-71cb554eb926 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012779_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11R-A115-07 d9f827bb-2498-49b0-aa85-71cb554eb926 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012779_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11R-A115-07 d9f827bb-2498-49b0-aa85-71cb554eb926 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_410990.TCGA-E2-A14X-01A-11R-A115-07.110607_UNC14-SN744_0124_AD0CVCABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11R-A115-07 d9f827bb-2498-49b0-aa85-71cb554eb926 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_411011.TCGA-E2-A14X-01A-11R-A115-07.110607_UNC14-SN744_0124_AD0CVCABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11R-A115-07 d9f827bb-2498-49b0-aa85-71cb554eb926 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_411150.TCGA-E2-A14X-01A-11R-A115-07.110607_UNC14-SN744_0124_AD0CVCABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14X TCGA-E2-A14X-01A TCGA-E2-A14X-01A-11W-A12T-09 679835cb-39a8-47f0-baeb-d1e501013b25 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14X TCGA-E2-A14X-10A TCGA-E2-A14X-10A-01D-A10Z-02 a034c423-dbe3-4894-9702-e6381649010e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14X TCGA-E2-A14X-10A TCGA-E2-A14X-10A-01D-A110-09 764eea81-96aa-4302-a9e1-477e4cd25a5d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14X TCGA-E2-A14X-10A TCGA-E2-A14X-10A-01D-A110-09 764eea81-96aa-4302-a9e1-477e4cd25a5d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A14X TCGA-E2-A14X-10A TCGA-E2-A14X-10A-01D-A113-01 6bea1fd9-3e70-44ee-aa01-6c97cfb93205 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14X TCGA-E2-A14X-10A TCGA-E2-A14X-10A-01D-A113-01 6bea1fd9-3e70-44ee-aa01-6c97cfb93205 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A09_735258.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-E2-A14X TCGA-E2-A14X-10A TCGA-E2-A14X-10A-01D-A113-01 6bea1fd9-3e70-44ee-aa01-6c97cfb93205 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A09_735258.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14X TCGA-E2-A14X-10A TCGA-E2-A14X-10A-01D-A113-01 6bea1fd9-3e70-44ee-aa01-6c97cfb93205 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A09_735258.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14X TCGA-E2-A14X-10A TCGA-E2-A14X-10A-01D-A113-01 6bea1fd9-3e70-44ee-aa01-6c97cfb93205 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A09_735258.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14X TCGA-E2-A14X-10A TCGA-E2-A14X-10A-01D-A113-01 6bea1fd9-3e70-44ee-aa01-6c97cfb93205 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A09_735258.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14X TCGA-E2-A14X-10A TCGA-E2-A14X-10A-01D-A113-01 6bea1fd9-3e70-44ee-aa01-6c97cfb93205 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A09_735258.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14X TCGA-E2-A14X-10A TCGA-E2-A14X-10A-01D-A113-01 6bea1fd9-3e70-44ee-aa01-6c97cfb93205 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A09_735258.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14X TCGA-E2-A14X-10A TCGA-E2-A14X-10A-01D-A113-01 6bea1fd9-3e70-44ee-aa01-6c97cfb93205 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A09_735258.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-E2-A14X TCGA-E2-A14X-10A TCGA-E2-A14X-10A-01W-A12U-09 e3b307d8-fb0a-412f-9a86-3cf1605b9c98 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14X.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21D-A129-02 0c5b481f-fa45-4923-8e13-9523cad06a95 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21D-A12A-01 4f21ba10-b578-4a5a-a941-399c4cc65329 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21D-A12A-01 4f21ba10-b578-4a5a-a941-399c4cc65329 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D11_741488.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21D-A12A-01 4f21ba10-b578-4a5a-a941-399c4cc65329 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D11_741488.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21D-A12A-01 4f21ba10-b578-4a5a-a941-399c4cc65329 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D11_741488.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21D-A12A-01 4f21ba10-b578-4a5a-a941-399c4cc65329 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D11_741488.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21D-A12A-01 4f21ba10-b578-4a5a-a941-399c4cc65329 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D11_741488.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21D-A12A-01 4f21ba10-b578-4a5a-a941-399c4cc65329 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D11_741488.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21D-A12A-01 4f21ba10-b578-4a5a-a941-399c4cc65329 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D11_741488.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21D-A12A-01 4f21ba10-b578-4a5a-a941-399c4cc65329 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D11_741488.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21D-A12B-09 f63f0927-5186-4558-853d-4eed95ba0ac8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21D-A12B-09 f63f0927-5186-4558-853d-4eed95ba0ac8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21D-A12E-05 3ab00048-b14d-46bc-abf4-13fb5228f418 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21D-A12E-05 3ab00048-b14d-46bc-abf4-13fb5228f418 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-E2-A14Y-01A-21D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21D-A12E-05 3ab00048-b14d-46bc-abf4-13fb5228f418 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-E2-A14Y-01A-21D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21D-A12E-05 3ab00048-b14d-46bc-abf4-13fb5228f418 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-E2-A14Y-01A-21D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21R-A12C-13 b31ab1a0-41bd-4c00-9c3a-26b500ecaedb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21R-A12C-13 b31ab1a0-41bd-4c00-9c3a-26b500ecaedb miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A14Y-01A-21R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21R-A12C-13 b31ab1a0-41bd-4c00-9c3a-26b500ecaedb miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A14Y-01A-21R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21R-A12D-07 3ea70053-af2a-4fec-9416-d18b6156f516 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21R-A12D-07 3ea70053-af2a-4fec-9416-d18b6156f516 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012910_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21R-A12D-07 3ea70053-af2a-4fec-9416-d18b6156f516 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012910_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21R-A12D-07 3ea70053-af2a-4fec-9416-d18b6156f516 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012910_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21R-A12D-07 3ea70053-af2a-4fec-9416-d18b6156f516 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437519.TCGA-E2-A14Y-01A-21R-A12D-07.110718_UNC12-SN629_0110_AB0AR8ABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21R-A12D-07 3ea70053-af2a-4fec-9416-d18b6156f516 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437592.TCGA-E2-A14Y-01A-21R-A12D-07.110718_UNC12-SN629_0110_AB0AR8ABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21R-A12D-07 3ea70053-af2a-4fec-9416-d18b6156f516 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437698.TCGA-E2-A14Y-01A-21R-A12D-07.110718_UNC12-SN629_0110_AB0AR8ABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-01A TCGA-E2-A14Y-01A-21W-A12S-09 fd3b1ac9-e6bf-4af1-aca0-db8a7ef4a400 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-10A TCGA-E2-A14Y-10A-01D-A129-02 c7dea63f-7a5c-4248-8d5c-1b6608fefbb7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-10A TCGA-E2-A14Y-10A-01D-A12A-01 b2690d2e-b497-4f34-b79e-b578a174fd93 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-10A TCGA-E2-A14Y-10A-01D-A12A-01 b2690d2e-b497-4f34-b79e-b578a174fd93 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G11_741466.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A14Y TCGA-E2-A14Y-10A TCGA-E2-A14Y-10A-01D-A12A-01 b2690d2e-b497-4f34-b79e-b578a174fd93 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G11_741466.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-10A TCGA-E2-A14Y-10A-01D-A12A-01 b2690d2e-b497-4f34-b79e-b578a174fd93 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G11_741466.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-10A TCGA-E2-A14Y-10A-01D-A12A-01 b2690d2e-b497-4f34-b79e-b578a174fd93 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G11_741466.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-10A TCGA-E2-A14Y-10A-01D-A12A-01 b2690d2e-b497-4f34-b79e-b578a174fd93 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G11_741466.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-10A TCGA-E2-A14Y-10A-01D-A12A-01 b2690d2e-b497-4f34-b79e-b578a174fd93 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G11_741466.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-10A TCGA-E2-A14Y-10A-01D-A12A-01 b2690d2e-b497-4f34-b79e-b578a174fd93 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G11_741466.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-10A TCGA-E2-A14Y-10A-01D-A12A-01 b2690d2e-b497-4f34-b79e-b578a174fd93 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G11_741466.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-10A TCGA-E2-A14Y-10A-01D-A12B-09 1297e0da-fbf8-4566-8f22-17095e4031f4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-10A TCGA-E2-A14Y-10A-01D-A12B-09 1297e0da-fbf8-4566-8f22-17095e4031f4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-10A TCGA-E2-A14Y-10A-01W-A12S-09 03f7ebcf-f0c6-4d87-b4d1-f709690e3a8e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-11A TCGA-E2-A14Y-11A-33D-A129-02 c218e4cb-d3e6-44ee-9098-f366ca9d7339 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-11A TCGA-E2-A14Y-11A-33D-A12A-01 6aa5f08a-5c88-4337-b711-4842a00378c2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-11A TCGA-E2-A14Y-11A-33D-A12A-01 6aa5f08a-5c88-4337-b711-4842a00378c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G12_741544.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A14Y TCGA-E2-A14Y-11A TCGA-E2-A14Y-11A-33D-A12A-01 6aa5f08a-5c88-4337-b711-4842a00378c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G12_741544.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-11A TCGA-E2-A14Y-11A-33D-A12A-01 6aa5f08a-5c88-4337-b711-4842a00378c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G12_741544.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-11A TCGA-E2-A14Y-11A-33D-A12A-01 6aa5f08a-5c88-4337-b711-4842a00378c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G12_741544.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-11A TCGA-E2-A14Y-11A-33D-A12A-01 6aa5f08a-5c88-4337-b711-4842a00378c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G12_741544.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-11A TCGA-E2-A14Y-11A-33D-A12A-01 6aa5f08a-5c88-4337-b711-4842a00378c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G12_741544.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-11A TCGA-E2-A14Y-11A-33D-A12A-01 6aa5f08a-5c88-4337-b711-4842a00378c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G12_741544.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-11A TCGA-E2-A14Y-11A-33D-A12A-01 6aa5f08a-5c88-4337-b711-4842a00378c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_G12_741544.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-11A TCGA-E2-A14Y-11A-33D-A12B-09 4bca2c1c-af66-454e-a3a0-18f0e11318c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-11A TCGA-E2-A14Y-11A-33D-A12B-09 4bca2c1c-af66-454e-a3a0-18f0e11318c8 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-11A TCGA-E2-A14Y-11A-33D-A12E-05 34a7dc87-f0ed-4be7-80bf-ddeee1785140 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-11A TCGA-E2-A14Y-11A-33D-A12E-05 34a7dc87-f0ed-4be7-80bf-ddeee1785140 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-E2-A14Y-11A-33D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-11A TCGA-E2-A14Y-11A-33D-A12E-05 34a7dc87-f0ed-4be7-80bf-ddeee1785140 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-E2-A14Y-11A-33D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-11A TCGA-E2-A14Y-11A-33D-A12E-05 34a7dc87-f0ed-4be7-80bf-ddeee1785140 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-E2-A14Y-11A-33D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-E2-A14Y TCGA-E2-A14Y-11A TCGA-E2-A14Y-11A-33W-A12S-09 1ebcc0c7-6655-4bce-b02e-7c873d5a7d81 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Y.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11D-A10X-02 eb4e0dbb-1f8d-441c-ad61-bcf7291bba5c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11D-A10Y-09 c83eaaca-ced5-4630-abb5-ef34db888753 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11D-A10Y-09 c83eaaca-ced5-4630-abb5-ef34db888753 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11D-A111-01 04dac9e1-f867-481c-aa21-5c17336af1fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11D-A111-01 04dac9e1-f867-481c-aa21-5c17336af1fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H05_735336.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11D-A111-01 04dac9e1-f867-481c-aa21-5c17336af1fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H05_735336.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11D-A111-01 04dac9e1-f867-481c-aa21-5c17336af1fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H05_735336.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11D-A111-01 04dac9e1-f867-481c-aa21-5c17336af1fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H05_735336.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11D-A111-01 04dac9e1-f867-481c-aa21-5c17336af1fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H05_735336.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11D-A111-01 04dac9e1-f867-481c-aa21-5c17336af1fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H05_735336.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11D-A111-01 04dac9e1-f867-481c-aa21-5c17336af1fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H05_735336.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11D-A111-01 04dac9e1-f867-481c-aa21-5c17336af1fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_H05_735336.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11D-A112-05 093a8810-6d22-4af6-b55b-d0bdb389d9d3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11D-A112-05 093a8810-6d22-4af6-b55b-d0bdb389d9d3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-E2-A14Z-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11D-A112-05 093a8810-6d22-4af6-b55b-d0bdb389d9d3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-E2-A14Z-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11D-A112-05 093a8810-6d22-4af6-b55b-d0bdb389d9d3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-E2-A14Z-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11R-A114-13 356b7252-3712-4bb2-a465-e42cd57ee67e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11R-A114-13 356b7252-3712-4bb2-a465-e42cd57ee67e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A14Z-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11R-A114-13 356b7252-3712-4bb2-a465-e42cd57ee67e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A14Z-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11R-A115-07 bcf768ee-138c-42a4-a3bf-b8d509c644d9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11R-A115-07 bcf768ee-138c-42a4-a3bf-b8d509c644d9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012793_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11R-A115-07 bcf768ee-138c-42a4-a3bf-b8d509c644d9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012793_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11R-A115-07 bcf768ee-138c-42a4-a3bf-b8d509c644d9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012793_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11R-A115-07 bcf768ee-138c-42a4-a3bf-b8d509c644d9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420611.TCGA-E2-A14Z-01A-11R-A115-07.110608_SN254_0231_BD0CT2ABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11R-A115-07 bcf768ee-138c-42a4-a3bf-b8d509c644d9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420624.TCGA-E2-A14Z-01A-11R-A115-07.110608_SN254_0231_BD0CT2ABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11R-A115-07 bcf768ee-138c-42a4-a3bf-b8d509c644d9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420675.TCGA-E2-A14Z-01A-11R-A115-07.110608_SN254_0231_BD0CT2ABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-01A TCGA-E2-A14Z-01A-11W-A12T-09 f84e6fa8-8947-4b73-8521-550a3cd05e43 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-10A TCGA-E2-A14Z-10A-01D-A10Z-02 742840b5-34c0-40f2-9749-1382205bc865 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-10A TCGA-E2-A14Z-10A-01D-A110-09 ef3b19d2-804c-4f88-bfc7-b0057d166e81 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-10A TCGA-E2-A14Z-10A-01D-A110-09 ef3b19d2-804c-4f88-bfc7-b0057d166e81 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-10A TCGA-E2-A14Z-10A-01D-A113-01 088fa199-036f-4bb6-ac16-f8bc67da6717 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-10A TCGA-E2-A14Z-10A-01D-A113-01 088fa199-036f-4bb6-ac16-f8bc67da6717 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F06_735254.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-E2-A14Z TCGA-E2-A14Z-10A TCGA-E2-A14Z-10A-01D-A113-01 088fa199-036f-4bb6-ac16-f8bc67da6717 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F06_735254.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-10A TCGA-E2-A14Z-10A-01D-A113-01 088fa199-036f-4bb6-ac16-f8bc67da6717 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F06_735254.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-10A TCGA-E2-A14Z-10A-01D-A113-01 088fa199-036f-4bb6-ac16-f8bc67da6717 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F06_735254.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-10A TCGA-E2-A14Z-10A-01D-A113-01 088fa199-036f-4bb6-ac16-f8bc67da6717 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F06_735254.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-10A TCGA-E2-A14Z-10A-01D-A113-01 088fa199-036f-4bb6-ac16-f8bc67da6717 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F06_735254.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-10A TCGA-E2-A14Z-10A-01D-A113-01 088fa199-036f-4bb6-ac16-f8bc67da6717 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F06_735254.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-10A TCGA-E2-A14Z-10A-01D-A113-01 088fa199-036f-4bb6-ac16-f8bc67da6717 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_F06_735254.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-E2-A14Z TCGA-E2-A14Z-10A TCGA-E2-A14Z-10A-01W-A12U-09 fab32e1f-342b-4dc3-9fe1-9a0c62e82663 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A14Z.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11D-A129-02 504e7913-4920-43f8-87c5-48bbc896db73 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A150.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11D-A12A-01 752855b4-0b2c-4e89-b11f-f4e52d40c45f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A150.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11D-A12A-01 752855b4-0b2c-4e89-b11f-f4e52d40c45f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E01_741486.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11D-A12A-01 752855b4-0b2c-4e89-b11f-f4e52d40c45f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E01_741486.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11D-A12A-01 752855b4-0b2c-4e89-b11f-f4e52d40c45f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E01_741486.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11D-A12A-01 752855b4-0b2c-4e89-b11f-f4e52d40c45f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E01_741486.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11D-A12A-01 752855b4-0b2c-4e89-b11f-f4e52d40c45f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E01_741486.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11D-A12A-01 752855b4-0b2c-4e89-b11f-f4e52d40c45f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E01_741486.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11D-A12A-01 752855b4-0b2c-4e89-b11f-f4e52d40c45f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E01_741486.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11D-A12A-01 752855b4-0b2c-4e89-b11f-f4e52d40c45f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E01_741486.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11D-A12B-09 446064de-ff64-4113-9080-360e5bf6d5e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A150.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11D-A12B-09 446064de-ff64-4113-9080-360e5bf6d5e4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11D-A12E-05 0113db6d-e1de-4e88-8c2a-f356e88eb8d3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A150.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11D-A12E-05 0113db6d-e1de-4e88-8c2a-f356e88eb8d3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-E2-A150-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11D-A12E-05 0113db6d-e1de-4e88-8c2a-f356e88eb8d3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-E2-A150-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11D-A12E-05 0113db6d-e1de-4e88-8c2a-f356e88eb8d3 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-E2-A150-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11R-A12C-13 751de392-427b-4919-8d49-25cd34cb261e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A150.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11R-A12C-13 751de392-427b-4919-8d49-25cd34cb261e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A150-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11R-A12C-13 751de392-427b-4919-8d49-25cd34cb261e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A150-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11R-A12D-07 46262a6c-8a11-4bb9-8851-8b6e44c95288 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A150.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11R-A12D-07 46262a6c-8a11-4bb9-8851-8b6e44c95288 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012917_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11R-A12D-07 46262a6c-8a11-4bb9-8851-8b6e44c95288 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012917_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11R-A12D-07 46262a6c-8a11-4bb9-8851-8b6e44c95288 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012917_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11R-A12D-07 46262a6c-8a11-4bb9-8851-8b6e44c95288 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_704943.TCGA-E2-A150-01A-11R-A12D-07.110714_UNC13-SN749_0083_BD0DLNABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11R-A12D-07 46262a6c-8a11-4bb9-8851-8b6e44c95288 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_704960.TCGA-E2-A150-01A-11R-A12D-07.110714_UNC13-SN749_0083_BD0DLNABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11R-A12D-07 46262a6c-8a11-4bb9-8851-8b6e44c95288 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_705038.TCGA-E2-A150-01A-11R-A12D-07.110714_UNC13-SN749_0083_BD0DLNABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A150 TCGA-E2-A150-01A TCGA-E2-A150-01A-11W-A12S-09 f69232ba-127b-4945-8978-3954379418c2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A150.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A150 TCGA-E2-A150-10A TCGA-E2-A150-10A-01D-A129-02 f667a712-0952-4645-81b6-be9b7ee5bfba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A150.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A150 TCGA-E2-A150-10A TCGA-E2-A150-10A-01D-A12A-01 872bb288-0a67-47f6-841b-f106628cce8d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A150.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A150 TCGA-E2-A150-10A TCGA-E2-A150-10A-01D-A12A-01 872bb288-0a67-47f6-841b-f106628cce8d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E04_741512.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A150 TCGA-E2-A150-10A TCGA-E2-A150-10A-01D-A12A-01 872bb288-0a67-47f6-841b-f106628cce8d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E04_741512.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A150 TCGA-E2-A150-10A TCGA-E2-A150-10A-01D-A12A-01 872bb288-0a67-47f6-841b-f106628cce8d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E04_741512.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A150 TCGA-E2-A150-10A TCGA-E2-A150-10A-01D-A12A-01 872bb288-0a67-47f6-841b-f106628cce8d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E04_741512.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A150 TCGA-E2-A150-10A TCGA-E2-A150-10A-01D-A12A-01 872bb288-0a67-47f6-841b-f106628cce8d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E04_741512.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A150 TCGA-E2-A150-10A TCGA-E2-A150-10A-01D-A12A-01 872bb288-0a67-47f6-841b-f106628cce8d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E04_741512.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A150 TCGA-E2-A150-10A TCGA-E2-A150-10A-01D-A12A-01 872bb288-0a67-47f6-841b-f106628cce8d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E04_741512.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A150 TCGA-E2-A150-10A TCGA-E2-A150-10A-01D-A12A-01 872bb288-0a67-47f6-841b-f106628cce8d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E04_741512.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A150 TCGA-E2-A150-10A TCGA-E2-A150-10A-01D-A12B-09 17e424ec-2364-4fa2-ae06-9fa4a409fe3e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A150.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A150 TCGA-E2-A150-10A TCGA-E2-A150-10A-01D-A12B-09 17e424ec-2364-4fa2-ae06-9fa4a409fe3e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A150 TCGA-E2-A150-10A TCGA-E2-A150-10A-01W-A12S-09 d0a1c7e7-a4d7-4999-9fe3-913b820bd6a9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A150.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11D-A129-02 a2db25d4-3acd-43f8-9cac-8aea9e8c342a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A152.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11D-A12A-01 01a1e8a0-51e3-400b-81dc-581a93199892 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A152.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11D-A12A-01 01a1e8a0-51e3-400b-81dc-581a93199892 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E07_741442.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11D-A12A-01 01a1e8a0-51e3-400b-81dc-581a93199892 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E07_741442.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11D-A12A-01 01a1e8a0-51e3-400b-81dc-581a93199892 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E07_741442.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11D-A12A-01 01a1e8a0-51e3-400b-81dc-581a93199892 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E07_741442.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11D-A12A-01 01a1e8a0-51e3-400b-81dc-581a93199892 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E07_741442.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11D-A12A-01 01a1e8a0-51e3-400b-81dc-581a93199892 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E07_741442.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11D-A12A-01 01a1e8a0-51e3-400b-81dc-581a93199892 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E07_741442.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11D-A12A-01 01a1e8a0-51e3-400b-81dc-581a93199892 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E07_741442.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11D-A12B-09 b266b370-425c-4146-8b72-59248436618e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A152.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11D-A12B-09 b266b370-425c-4146-8b72-59248436618e Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11D-A12E-05 162adf86-a631-437e-9eff-a39ed69f2fca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A152.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11D-A12E-05 162adf86-a631-437e-9eff-a39ed69f2fca DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-E2-A152-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11D-A12E-05 162adf86-a631-437e-9eff-a39ed69f2fca DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-E2-A152-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11D-A12E-05 162adf86-a631-437e-9eff-a39ed69f2fca DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-E2-A152-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11D-A19H-09 8691c87f-2468-44bb-a670-3dccd6da33c6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A152.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11R-A12C-13 45983718-758c-4019-8268-94ab9b53dbba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A152.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11R-A12C-13 45983718-758c-4019-8268-94ab9b53dbba miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A152-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11R-A12C-13 45983718-758c-4019-8268-94ab9b53dbba miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A152-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11R-A12D-07 be8c1926-064b-4a2f-9345-e34f0dc78bff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A152.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11R-A12D-07 be8c1926-064b-4a2f-9345-e34f0dc78bff Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012923_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11R-A12D-07 be8c1926-064b-4a2f-9345-e34f0dc78bff Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012923_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11R-A12D-07 be8c1926-064b-4a2f-9345-e34f0dc78bff Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012923_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11R-A12D-07 be8c1926-064b-4a2f-9345-e34f0dc78bff RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_704972.TCGA-E2-A152-01A-11R-A12D-07.110714_UNC13-SN749_0083_BD0DLNABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11R-A12D-07 be8c1926-064b-4a2f-9345-e34f0dc78bff RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_704995.TCGA-E2-A152-01A-11R-A12D-07.110714_UNC13-SN749_0083_BD0DLNABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11R-A12D-07 be8c1926-064b-4a2f-9345-e34f0dc78bff RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_705044.TCGA-E2-A152-01A-11R-A12D-07.110714_UNC13-SN749_0083_BD0DLNABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A152 TCGA-E2-A152-01A TCGA-E2-A152-01A-11W-A12S-09 b07aeea7-22d8-442f-97c3-95a7c4a1996c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A152.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A152 TCGA-E2-A152-10A TCGA-E2-A152-10A-01D-A129-02 a134de85-e238-4e2f-9346-9514fe80d258 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A152.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A152 TCGA-E2-A152-10A TCGA-E2-A152-10A-01D-A12A-01 b61265e3-20aa-4a0c-81dc-fda9eea702ff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A152.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A152 TCGA-E2-A152-10A TCGA-E2-A152-10A-01D-A12A-01 b61265e3-20aa-4a0c-81dc-fda9eea702ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A09_741454.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A152 TCGA-E2-A152-10A TCGA-E2-A152-10A-01D-A12A-01 b61265e3-20aa-4a0c-81dc-fda9eea702ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A09_741454.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A152 TCGA-E2-A152-10A TCGA-E2-A152-10A-01D-A12A-01 b61265e3-20aa-4a0c-81dc-fda9eea702ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A09_741454.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A152 TCGA-E2-A152-10A TCGA-E2-A152-10A-01D-A12A-01 b61265e3-20aa-4a0c-81dc-fda9eea702ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A09_741454.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A152 TCGA-E2-A152-10A TCGA-E2-A152-10A-01D-A12A-01 b61265e3-20aa-4a0c-81dc-fda9eea702ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A09_741454.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A152 TCGA-E2-A152-10A TCGA-E2-A152-10A-01D-A12A-01 b61265e3-20aa-4a0c-81dc-fda9eea702ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A09_741454.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A152 TCGA-E2-A152-10A TCGA-E2-A152-10A-01D-A12A-01 b61265e3-20aa-4a0c-81dc-fda9eea702ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A09_741454.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A152 TCGA-E2-A152-10A TCGA-E2-A152-10A-01D-A12A-01 b61265e3-20aa-4a0c-81dc-fda9eea702ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A09_741454.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A152 TCGA-E2-A152-10A TCGA-E2-A152-10A-01D-A12B-09 61e9e215-f15b-4968-9afc-4931ad991c80 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A152.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A152 TCGA-E2-A152-10A TCGA-E2-A152-10A-01D-A12B-09 61e9e215-f15b-4968-9afc-4931ad991c80 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A152 TCGA-E2-A152-10A TCGA-E2-A152-10A-01D-A19H-09 236fd25d-cae3-4acf-aef7-7def6042f30a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A152.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A152 TCGA-E2-A152-10A TCGA-E2-A152-10A-01W-A12S-09 b8c25533-df9c-4107-b508-4bc5ccef5c64 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A152.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12D-A129-02 b0322b6d-7a04-4f89-853d-4a644515fb99 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A153.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12D-A12A-01 4fe0a5b3-cc20-4dc4-8d8a-6417866e392b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A153.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12D-A12A-01 4fe0a5b3-cc20-4dc4-8d8a-6417866e392b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C04_741390.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12D-A12A-01 4fe0a5b3-cc20-4dc4-8d8a-6417866e392b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C04_741390.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12D-A12A-01 4fe0a5b3-cc20-4dc4-8d8a-6417866e392b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C04_741390.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12D-A12A-01 4fe0a5b3-cc20-4dc4-8d8a-6417866e392b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C04_741390.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12D-A12A-01 4fe0a5b3-cc20-4dc4-8d8a-6417866e392b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C04_741390.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12D-A12A-01 4fe0a5b3-cc20-4dc4-8d8a-6417866e392b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C04_741390.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12D-A12A-01 4fe0a5b3-cc20-4dc4-8d8a-6417866e392b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C04_741390.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12D-A12A-01 4fe0a5b3-cc20-4dc4-8d8a-6417866e392b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C04_741390.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12D-A12B-09 5087c0d3-3b55-4713-a448-4869ffccdde5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A153.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12D-A12B-09 5087c0d3-3b55-4713-a448-4869ffccdde5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12D-A12E-05 f0e1a211-6e03-424b-a9ea-42b3c84bc7b4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A153.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12D-A12E-05 f0e1a211-6e03-424b-a9ea-42b3c84bc7b4 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-E2-A153-01A-12D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12D-A12E-05 f0e1a211-6e03-424b-a9ea-42b3c84bc7b4 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-E2-A153-01A-12D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12D-A12E-05 f0e1a211-6e03-424b-a9ea-42b3c84bc7b4 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-E2-A153-01A-12D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12R-A12C-13 34c6aefd-fb21-4831-91f5-34f6dd3a8e41 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A153.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12R-A12C-13 34c6aefd-fb21-4831-91f5-34f6dd3a8e41 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A153-01A-12R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12R-A12C-13 34c6aefd-fb21-4831-91f5-34f6dd3a8e41 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A153-01A-12R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12R-A12D-07 be4b0243-555a-4e4b-94fb-af6ba60058d0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A153.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12R-A12D-07 be4b0243-555a-4e4b-94fb-af6ba60058d0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012934_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12R-A12D-07 be4b0243-555a-4e4b-94fb-af6ba60058d0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012934_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12R-A12D-07 be4b0243-555a-4e4b-94fb-af6ba60058d0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012934_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12R-A12D-07 be4b0243-555a-4e4b-94fb-af6ba60058d0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_703982.TCGA-E2-A153-01A-12R-A12D-07.110714_UNC13-SN749_0083_BD0DLNABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12R-A12D-07 be4b0243-555a-4e4b-94fb-af6ba60058d0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_703990.TCGA-E2-A153-01A-12R-A12D-07.110714_UNC13-SN749_0083_BD0DLNABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12R-A12D-07 be4b0243-555a-4e4b-94fb-af6ba60058d0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_704018.TCGA-E2-A153-01A-12R-A12D-07.110714_UNC13-SN749_0083_BD0DLNABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A153 TCGA-E2-A153-01A TCGA-E2-A153-01A-12W-A12S-09 56bad659-2f94-47a5-9362-71c7e81505ee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A153.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A153 TCGA-E2-A153-10A TCGA-E2-A153-10A-01D-A129-02 b9321298-03c1-4d34-b124-9c692a494be6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A153.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A153 TCGA-E2-A153-10A TCGA-E2-A153-10A-01D-A12A-01 649b2251-a8b0-469c-9660-bd566eb73704 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A153.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A153 TCGA-E2-A153-10A TCGA-E2-A153-10A-01D-A12A-01 649b2251-a8b0-469c-9660-bd566eb73704 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C05_741490.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A153 TCGA-E2-A153-10A TCGA-E2-A153-10A-01D-A12A-01 649b2251-a8b0-469c-9660-bd566eb73704 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C05_741490.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A153 TCGA-E2-A153-10A TCGA-E2-A153-10A-01D-A12A-01 649b2251-a8b0-469c-9660-bd566eb73704 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C05_741490.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A153 TCGA-E2-A153-10A TCGA-E2-A153-10A-01D-A12A-01 649b2251-a8b0-469c-9660-bd566eb73704 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C05_741490.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A153 TCGA-E2-A153-10A TCGA-E2-A153-10A-01D-A12A-01 649b2251-a8b0-469c-9660-bd566eb73704 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C05_741490.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A153 TCGA-E2-A153-10A TCGA-E2-A153-10A-01D-A12A-01 649b2251-a8b0-469c-9660-bd566eb73704 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C05_741490.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A153 TCGA-E2-A153-10A TCGA-E2-A153-10A-01D-A12A-01 649b2251-a8b0-469c-9660-bd566eb73704 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C05_741490.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A153 TCGA-E2-A153-10A TCGA-E2-A153-10A-01D-A12A-01 649b2251-a8b0-469c-9660-bd566eb73704 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C05_741490.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A153 TCGA-E2-A153-10A TCGA-E2-A153-10A-01D-A12B-09 66529b84-d110-45b3-acb9-fe08f97a7cce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A153.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A153 TCGA-E2-A153-10A TCGA-E2-A153-10A-01D-A12B-09 66529b84-d110-45b3-acb9-fe08f97a7cce Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A153 TCGA-E2-A153-10A TCGA-E2-A153-10A-01W-A12S-09 8920ba47-e8df-4a98-88b3-c791e713e96e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A153.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31D-A129-02 d1669f29-1e2d-4bad-8765-6bed3e42ce5b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A153.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31D-A12A-01 eb52f447-fccc-43bf-9e74-ad40d0d95c44 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A153.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31D-A12A-01 eb52f447-fccc-43bf-9e74-ad40d0d95c44 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E03_741536.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31D-A12A-01 eb52f447-fccc-43bf-9e74-ad40d0d95c44 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E03_741536.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31D-A12A-01 eb52f447-fccc-43bf-9e74-ad40d0d95c44 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E03_741536.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31D-A12A-01 eb52f447-fccc-43bf-9e74-ad40d0d95c44 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E03_741536.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31D-A12A-01 eb52f447-fccc-43bf-9e74-ad40d0d95c44 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E03_741536.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31D-A12A-01 eb52f447-fccc-43bf-9e74-ad40d0d95c44 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E03_741536.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31D-A12A-01 eb52f447-fccc-43bf-9e74-ad40d0d95c44 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E03_741536.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31D-A12A-01 eb52f447-fccc-43bf-9e74-ad40d0d95c44 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E03_741536.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31D-A12B-09 527161e1-3015-4b27-9f4b-53d6d2a05079 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A153.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31D-A12B-09 527161e1-3015-4b27-9f4b-53d6d2a05079 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31D-A12E-05 19775d3c-05f5-40a0-9f43-fdb3855a4471 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A153.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31D-A12E-05 19775d3c-05f5-40a0-9f43-fdb3855a4471 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-E2-A153-11A-31D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31D-A12E-05 19775d3c-05f5-40a0-9f43-fdb3855a4471 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-E2-A153-11A-31D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31D-A12E-05 19775d3c-05f5-40a0-9f43-fdb3855a4471 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-E2-A153-11A-31D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31R-A12C-13 8ab19123-90af-434e-9a3a-876857b13754 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A153.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31R-A12C-13 8ab19123-90af-434e-9a3a-876857b13754 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A153-11A-31R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31R-A12C-13 8ab19123-90af-434e-9a3a-876857b13754 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A153-11A-31R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31R-A12D-07 b5ab3b76-36f6-45a7-acad-77288da0d13c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A153.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31R-A12D-07 b5ab3b76-36f6-45a7-acad-77288da0d13c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012937_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31R-A12D-07 b5ab3b76-36f6-45a7-acad-77288da0d13c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012937_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31R-A12D-07 b5ab3b76-36f6-45a7-acad-77288da0d13c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012937_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31R-A12D-07 b5ab3b76-36f6-45a7-acad-77288da0d13c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_704404.TCGA-E2-A153-11A-31R-A12D-07.110714_UNC13-SN749_0083_BD0DLNABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31R-A12D-07 b5ab3b76-36f6-45a7-acad-77288da0d13c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_704412.TCGA-E2-A153-11A-31R-A12D-07.110714_UNC13-SN749_0083_BD0DLNABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31R-A12D-07 b5ab3b76-36f6-45a7-acad-77288da0d13c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_704490.TCGA-E2-A153-11A-31R-A12D-07.110714_UNC13-SN749_0083_BD0DLNABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A153 TCGA-E2-A153-11A TCGA-E2-A153-11A-31W-A12S-09 1bf72380-d667-440a-877b-e15bf2153702 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A153.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11D-A10X-02 ec566a95-8383-41e6-89b0-8b3f69b6666d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A154.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11D-A10Y-09 336e39fb-d407-4ced-b7bb-e8ff5329abdb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A154.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11D-A10Y-09 336e39fb-d407-4ced-b7bb-e8ff5329abdb Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11D-A111-01 38971878-2e49-4de3-be7c-e1ce5f1317b6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A154.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11D-A111-01 38971878-2e49-4de3-be7c-e1ce5f1317b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E07_735242.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11D-A111-01 38971878-2e49-4de3-be7c-e1ce5f1317b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E07_735242.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11D-A111-01 38971878-2e49-4de3-be7c-e1ce5f1317b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E07_735242.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11D-A111-01 38971878-2e49-4de3-be7c-e1ce5f1317b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E07_735242.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11D-A111-01 38971878-2e49-4de3-be7c-e1ce5f1317b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E07_735242.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11D-A111-01 38971878-2e49-4de3-be7c-e1ce5f1317b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E07_735242.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11D-A111-01 38971878-2e49-4de3-be7c-e1ce5f1317b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E07_735242.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11D-A111-01 38971878-2e49-4de3-be7c-e1ce5f1317b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E07_735242.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11D-A112-05 0961eb79-edc4-4d4e-ae5b-333bc7e28cfd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A154.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11D-A112-05 0961eb79-edc4-4d4e-ae5b-333bc7e28cfd DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-E2-A154-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11D-A112-05 0961eb79-edc4-4d4e-ae5b-333bc7e28cfd DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-E2-A154-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11D-A112-05 0961eb79-edc4-4d4e-ae5b-333bc7e28cfd DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-E2-A154-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11R-A114-13 8bb54050-1a7c-4a19-be3c-f29cd0caaf0b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A154.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11R-A114-13 8bb54050-1a7c-4a19-be3c-f29cd0caaf0b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A154-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11R-A114-13 8bb54050-1a7c-4a19-be3c-f29cd0caaf0b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A154-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11R-A115-07 81589acc-5dae-4cad-9f97-88b81fa53f92 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A154.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11R-A115-07 81589acc-5dae-4cad-9f97-88b81fa53f92 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012805_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11R-A115-07 81589acc-5dae-4cad-9f97-88b81fa53f92 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012805_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11R-A115-07 81589acc-5dae-4cad-9f97-88b81fa53f92 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012805_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11R-A115-07 81589acc-5dae-4cad-9f97-88b81fa53f92 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_847628.TCGA-E2-A154-01A-11R-A115-07.110608_SN254_0231_BD0CT2ABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11R-A115-07 81589acc-5dae-4cad-9f97-88b81fa53f92 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_847642.TCGA-E2-A154-01A-11R-A115-07.110608_SN254_0231_BD0CT2ABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11R-A115-07 81589acc-5dae-4cad-9f97-88b81fa53f92 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_847656.TCGA-E2-A154-01A-11R-A115-07.110608_SN254_0231_BD0CT2ABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A154 TCGA-E2-A154-01A TCGA-E2-A154-01A-11W-A12T-09 658e62ee-641d-4bf8-9930-a9988e5e54e5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A154.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A154 TCGA-E2-A154-10A TCGA-E2-A154-10A-01D-A10Z-02 116f2b72-f3ef-4d0a-b865-98f4c558ecce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A154.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A154 TCGA-E2-A154-10A TCGA-E2-A154-10A-01D-A110-09 2a64a2d9-2683-40fb-9e22-43cb3185321c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A154.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A154 TCGA-E2-A154-10A TCGA-E2-A154-10A-01D-A110-09 2a64a2d9-2683-40fb-9e22-43cb3185321c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A154 TCGA-E2-A154-10A TCGA-E2-A154-10A-01D-A113-01 0fd00ad1-569d-4995-96d3-8c37f73e8daa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A154.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A154 TCGA-E2-A154-10A TCGA-E2-A154-10A-01D-A113-01 0fd00ad1-569d-4995-96d3-8c37f73e8daa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C09_735306.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-E2-A154 TCGA-E2-A154-10A TCGA-E2-A154-10A-01D-A113-01 0fd00ad1-569d-4995-96d3-8c37f73e8daa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C09_735306.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A154 TCGA-E2-A154-10A TCGA-E2-A154-10A-01D-A113-01 0fd00ad1-569d-4995-96d3-8c37f73e8daa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C09_735306.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A154 TCGA-E2-A154-10A TCGA-E2-A154-10A-01D-A113-01 0fd00ad1-569d-4995-96d3-8c37f73e8daa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C09_735306.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A154 TCGA-E2-A154-10A TCGA-E2-A154-10A-01D-A113-01 0fd00ad1-569d-4995-96d3-8c37f73e8daa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C09_735306.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A154 TCGA-E2-A154-10A TCGA-E2-A154-10A-01D-A113-01 0fd00ad1-569d-4995-96d3-8c37f73e8daa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C09_735306.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A154 TCGA-E2-A154-10A TCGA-E2-A154-10A-01D-A113-01 0fd00ad1-569d-4995-96d3-8c37f73e8daa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C09_735306.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A154 TCGA-E2-A154-10A TCGA-E2-A154-10A-01D-A113-01 0fd00ad1-569d-4995-96d3-8c37f73e8daa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C09_735306.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-E2-A154 TCGA-E2-A154-10A TCGA-E2-A154-10A-01W-A12U-09 49156416-c00d-4bb7-8770-a28f5e60ee83 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A154.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11D-A129-02 dd48d8c3-85ef-4e5d-8012-1710bae05f51 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A155.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11D-A12A-01 e5ab2046-c8a8-4636-865c-c92d6b3da823 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A155.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11D-A12A-01 e5ab2046-c8a8-4636-865c-c92d6b3da823 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C07_741416.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11D-A12A-01 e5ab2046-c8a8-4636-865c-c92d6b3da823 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C07_741416.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11D-A12A-01 e5ab2046-c8a8-4636-865c-c92d6b3da823 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C07_741416.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11D-A12A-01 e5ab2046-c8a8-4636-865c-c92d6b3da823 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C07_741416.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11D-A12A-01 e5ab2046-c8a8-4636-865c-c92d6b3da823 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C07_741416.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11D-A12A-01 e5ab2046-c8a8-4636-865c-c92d6b3da823 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C07_741416.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11D-A12A-01 e5ab2046-c8a8-4636-865c-c92d6b3da823 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C07_741416.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11D-A12A-01 e5ab2046-c8a8-4636-865c-c92d6b3da823 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C07_741416.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11D-A12B-09 a966904f-e8dd-473c-8626-84c25d7e0d6c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A155.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11D-A12B-09 a966904f-e8dd-473c-8626-84c25d7e0d6c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11D-A12E-05 08601865-2432-454b-91cf-9c275e66097d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A155.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11D-A12E-05 08601865-2432-454b-91cf-9c275e66097d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-E2-A155-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11D-A12E-05 08601865-2432-454b-91cf-9c275e66097d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-E2-A155-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11D-A12E-05 08601865-2432-454b-91cf-9c275e66097d DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-E2-A155-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11R-A12C-13 59e75b05-5ddf-4c84-aaeb-d2f401ec886a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A155.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11R-A12C-13 59e75b05-5ddf-4c84-aaeb-d2f401ec886a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A155-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11R-A12C-13 59e75b05-5ddf-4c84-aaeb-d2f401ec886a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A155-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11R-A12D-07 6a345a9e-8173-4c9e-972d-df0b154c97b0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A155.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11R-A12D-07 6a345a9e-8173-4c9e-972d-df0b154c97b0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012868_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11R-A12D-07 6a345a9e-8173-4c9e-972d-df0b154c97b0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012868_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11R-A12D-07 6a345a9e-8173-4c9e-972d-df0b154c97b0 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012868_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11R-A12D-07 6a345a9e-8173-4c9e-972d-df0b154c97b0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441311.TCGA-E2-A155-01A-11R-A12D-07.110629_UNC15-SN850_0090_AC03J3ABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11R-A12D-07 6a345a9e-8173-4c9e-972d-df0b154c97b0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441317.TCGA-E2-A155-01A-11R-A12D-07.110629_UNC15-SN850_0090_AC03J3ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11R-A12D-07 6a345a9e-8173-4c9e-972d-df0b154c97b0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_441416.TCGA-E2-A155-01A-11R-A12D-07.110629_UNC15-SN850_0090_AC03J3ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A155 TCGA-E2-A155-01A TCGA-E2-A155-01A-11W-A12S-09 66dfef37-0562-49f6-a9cf-4af4c85594c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A155.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A155 TCGA-E2-A155-10A TCGA-E2-A155-10A-01D-A129-02 ac5e313a-1ac8-4357-8d80-cd6830dcbcda Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A155.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A155 TCGA-E2-A155-10A TCGA-E2-A155-10A-01D-A12A-01 4652a235-4441-4960-83e6-748033658981 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A155.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A155 TCGA-E2-A155-10A TCGA-E2-A155-10A-01D-A12A-01 4652a235-4441-4960-83e6-748033658981 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C11_741500.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A155 TCGA-E2-A155-10A TCGA-E2-A155-10A-01D-A12A-01 4652a235-4441-4960-83e6-748033658981 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C11_741500.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A155 TCGA-E2-A155-10A TCGA-E2-A155-10A-01D-A12A-01 4652a235-4441-4960-83e6-748033658981 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C11_741500.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A155 TCGA-E2-A155-10A TCGA-E2-A155-10A-01D-A12A-01 4652a235-4441-4960-83e6-748033658981 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C11_741500.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A155 TCGA-E2-A155-10A TCGA-E2-A155-10A-01D-A12A-01 4652a235-4441-4960-83e6-748033658981 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C11_741500.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A155 TCGA-E2-A155-10A TCGA-E2-A155-10A-01D-A12A-01 4652a235-4441-4960-83e6-748033658981 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C11_741500.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A155 TCGA-E2-A155-10A TCGA-E2-A155-10A-01D-A12A-01 4652a235-4441-4960-83e6-748033658981 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C11_741500.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A155 TCGA-E2-A155-10A TCGA-E2-A155-10A-01D-A12A-01 4652a235-4441-4960-83e6-748033658981 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C11_741500.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A155 TCGA-E2-A155-10A TCGA-E2-A155-10A-01D-A12B-09 ff422b83-8a29-41b3-8e73-2909fe3521da Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A155.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A155 TCGA-E2-A155-10A TCGA-E2-A155-10A-01D-A12B-09 ff422b83-8a29-41b3-8e73-2909fe3521da Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A155 TCGA-E2-A155-10A TCGA-E2-A155-10A-01W-A12S-09 87a31ce6-b4a5-4d15-b584-6d0111137681 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A155.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A156 TCGA-E2-A156-01A TCGA-E2-A156-01A-11D-A129-02 61e454bd-7cfc-4854-9606-1db670a99e11 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A156.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A156 TCGA-E2-A156-01A TCGA-E2-A156-01A-11D-A12A-01 f0443dd8-df97-44bb-bc63-5667adfe093c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A156.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A156 TCGA-E2-A156-01A TCGA-E2-A156-01A-11D-A12A-01 f0443dd8-df97-44bb-bc63-5667adfe093c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F08_741510.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A156 TCGA-E2-A156-01A TCGA-E2-A156-01A-11D-A12A-01 f0443dd8-df97-44bb-bc63-5667adfe093c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F08_741510.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A156 TCGA-E2-A156-01A TCGA-E2-A156-01A-11D-A12A-01 f0443dd8-df97-44bb-bc63-5667adfe093c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F08_741510.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A156 TCGA-E2-A156-01A TCGA-E2-A156-01A-11D-A12A-01 f0443dd8-df97-44bb-bc63-5667adfe093c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F08_741510.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A156 TCGA-E2-A156-01A TCGA-E2-A156-01A-11D-A12A-01 f0443dd8-df97-44bb-bc63-5667adfe093c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F08_741510.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A156 TCGA-E2-A156-01A TCGA-E2-A156-01A-11D-A12A-01 f0443dd8-df97-44bb-bc63-5667adfe093c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F08_741510.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A156 TCGA-E2-A156-01A TCGA-E2-A156-01A-11D-A12A-01 f0443dd8-df97-44bb-bc63-5667adfe093c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F08_741510.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A156 TCGA-E2-A156-01A TCGA-E2-A156-01A-11D-A12A-01 f0443dd8-df97-44bb-bc63-5667adfe093c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F08_741510.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A156 TCGA-E2-A156-01A TCGA-E2-A156-01A-11D-A12B-09 26003dce-0fc6-4538-a392-c80e1ebaa1e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A156.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A156 TCGA-E2-A156-01A TCGA-E2-A156-01A-11D-A12B-09 26003dce-0fc6-4538-a392-c80e1ebaa1e4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A156 TCGA-E2-A156-01A TCGA-E2-A156-01A-11D-A12E-05 49ccc329-fa6b-4ab7-9214-b74252f2ba51 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A156.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A156 TCGA-E2-A156-01A TCGA-E2-A156-01A-11D-A12E-05 49ccc329-fa6b-4ab7-9214-b74252f2ba51 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-E2-A156-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-E2-A156 TCGA-E2-A156-01A TCGA-E2-A156-01A-11D-A12E-05 49ccc329-fa6b-4ab7-9214-b74252f2ba51 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-E2-A156-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-E2-A156 TCGA-E2-A156-01A TCGA-E2-A156-01A-11D-A12E-05 49ccc329-fa6b-4ab7-9214-b74252f2ba51 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-E2-A156-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-E2-A156 TCGA-E2-A156-01A TCGA-E2-A156-01A-11R-A12C-13 5f2eb05d-24c9-4726-b5e2-38d2a2735be9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A156.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A156 TCGA-E2-A156-01A TCGA-E2-A156-01A-11R-A12C-13 5f2eb05d-24c9-4726-b5e2-38d2a2735be9 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A156-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A156 TCGA-E2-A156-01A TCGA-E2-A156-01A-11R-A12C-13 5f2eb05d-24c9-4726-b5e2-38d2a2735be9 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A156-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A156 TCGA-E2-A156-01A TCGA-E2-A156-01A-11R-A12D-07 b6ed3dfa-4d81-4e5c-9c1a-166894f92752 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A156.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A156 TCGA-E2-A156-01A TCGA-E2-A156-01A-11R-A12D-07 b6ed3dfa-4d81-4e5c-9c1a-166894f92752 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012876_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A156 TCGA-E2-A156-01A TCGA-E2-A156-01A-11R-A12D-07 b6ed3dfa-4d81-4e5c-9c1a-166894f92752 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012876_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A156 TCGA-E2-A156-01A TCGA-E2-A156-01A-11R-A12D-07 b6ed3dfa-4d81-4e5c-9c1a-166894f92752 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012876_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A156 TCGA-E2-A156-01A TCGA-E2-A156-01A-11W-A12S-09 4affc987-a2f1-4344-a51f-90676d61bc4c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A156.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A156 TCGA-E2-A156-10A TCGA-E2-A156-10A-01D-A129-02 cc317034-3510-439e-ba6f-1ca58b52e758 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A156.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A156 TCGA-E2-A156-10A TCGA-E2-A156-10A-01D-A12A-01 d6a2438c-78ea-429c-b8c4-4163759c2f4f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A156.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A156 TCGA-E2-A156-10A TCGA-E2-A156-10A-01D-A12A-01 d6a2438c-78ea-429c-b8c4-4163759c2f4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F10_741478.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A156 TCGA-E2-A156-10A TCGA-E2-A156-10A-01D-A12A-01 d6a2438c-78ea-429c-b8c4-4163759c2f4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F10_741478.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A156 TCGA-E2-A156-10A TCGA-E2-A156-10A-01D-A12A-01 d6a2438c-78ea-429c-b8c4-4163759c2f4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F10_741478.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A156 TCGA-E2-A156-10A TCGA-E2-A156-10A-01D-A12A-01 d6a2438c-78ea-429c-b8c4-4163759c2f4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F10_741478.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A156 TCGA-E2-A156-10A TCGA-E2-A156-10A-01D-A12A-01 d6a2438c-78ea-429c-b8c4-4163759c2f4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F10_741478.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A156 TCGA-E2-A156-10A TCGA-E2-A156-10A-01D-A12A-01 d6a2438c-78ea-429c-b8c4-4163759c2f4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F10_741478.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A156 TCGA-E2-A156-10A TCGA-E2-A156-10A-01D-A12A-01 d6a2438c-78ea-429c-b8c4-4163759c2f4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F10_741478.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A156 TCGA-E2-A156-10A TCGA-E2-A156-10A-01D-A12A-01 d6a2438c-78ea-429c-b8c4-4163759c2f4f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F10_741478.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A156 TCGA-E2-A156-10A TCGA-E2-A156-10A-01D-A12B-09 dd7e44af-58e2-43a5-af9c-29a48df02235 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A156.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A156 TCGA-E2-A156-10A TCGA-E2-A156-10A-01D-A12B-09 dd7e44af-58e2-43a5-af9c-29a48df02235 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A156 TCGA-E2-A156-10A TCGA-E2-A156-10A-01W-A12S-09 772c5639-886b-4c48-82f9-a65302545c34 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A156.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11D-A129-02 73261465-f38f-4290-be3a-2f15a5f6a90d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A158.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11D-A12A-01 c75325af-6b3b-40b9-88a2-79754c120cae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A158.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11D-A12A-01 c75325af-6b3b-40b9-88a2-79754c120cae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D04_741560.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11D-A12A-01 c75325af-6b3b-40b9-88a2-79754c120cae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D04_741560.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11D-A12A-01 c75325af-6b3b-40b9-88a2-79754c120cae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D04_741560.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11D-A12A-01 c75325af-6b3b-40b9-88a2-79754c120cae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D04_741560.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11D-A12A-01 c75325af-6b3b-40b9-88a2-79754c120cae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D04_741560.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11D-A12A-01 c75325af-6b3b-40b9-88a2-79754c120cae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D04_741560.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11D-A12A-01 c75325af-6b3b-40b9-88a2-79754c120cae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D04_741560.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11D-A12A-01 c75325af-6b3b-40b9-88a2-79754c120cae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D04_741560.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11D-A12B-09 5517dcca-46e7-4d0c-ba4f-193343f590d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A158.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11D-A12B-09 5517dcca-46e7-4d0c-ba4f-193343f590d6 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11D-A12E-05 7147ecf1-f877-460d-addf-f2057153cfde Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A158.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11D-A12E-05 7147ecf1-f877-460d-addf-f2057153cfde DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-E2-A158-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11D-A12E-05 7147ecf1-f877-460d-addf-f2057153cfde DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-E2-A158-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11D-A12E-05 7147ecf1-f877-460d-addf-f2057153cfde DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-E2-A158-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11R-A12C-13 298726b6-9aed-4b9f-bad9-d3b3d9d98ce6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A158.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11R-A12C-13 298726b6-9aed-4b9f-bad9-d3b3d9d98ce6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A158-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11R-A12C-13 298726b6-9aed-4b9f-bad9-d3b3d9d98ce6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A158-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11R-A12D-07 43326f71-c61c-410b-af4b-c71a054e27c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A158.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11R-A12D-07 43326f71-c61c-410b-af4b-c71a054e27c9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012884_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11R-A12D-07 43326f71-c61c-410b-af4b-c71a054e27c9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012884_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11R-A12D-07 43326f71-c61c-410b-af4b-c71a054e27c9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012884_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11R-A12D-07 43326f71-c61c-410b-af4b-c71a054e27c9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437838.TCGA-E2-A158-01A-11R-A12D-07.110718_UNC12-SN629_0110_AB0AR8ABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11R-A12D-07 43326f71-c61c-410b-af4b-c71a054e27c9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437863.TCGA-E2-A158-01A-11R-A12D-07.110718_UNC12-SN629_0110_AB0AR8ABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11R-A12D-07 43326f71-c61c-410b-af4b-c71a054e27c9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437957.TCGA-E2-A158-01A-11R-A12D-07.110718_UNC12-SN629_0110_AB0AR8ABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A158 TCGA-E2-A158-01A TCGA-E2-A158-01A-11W-A12S-09 d9162dea-d2a1-4286-8f83-4d7befb0eee1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A158.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A158 TCGA-E2-A158-10A TCGA-E2-A158-10A-01D-A129-02 bba08078-0cf9-41f2-ae12-1f4ada59e4d3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A158.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A158 TCGA-E2-A158-10A TCGA-E2-A158-10A-01D-A12A-01 933cc04f-f78c-4199-8700-10c1b44596c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A158.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A158 TCGA-E2-A158-10A TCGA-E2-A158-10A-01D-A12A-01 933cc04f-f78c-4199-8700-10c1b44596c1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B02_741474.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A158 TCGA-E2-A158-10A TCGA-E2-A158-10A-01D-A12A-01 933cc04f-f78c-4199-8700-10c1b44596c1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B02_741474.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A158 TCGA-E2-A158-10A TCGA-E2-A158-10A-01D-A12A-01 933cc04f-f78c-4199-8700-10c1b44596c1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B02_741474.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A158 TCGA-E2-A158-10A TCGA-E2-A158-10A-01D-A12A-01 933cc04f-f78c-4199-8700-10c1b44596c1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B02_741474.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A158 TCGA-E2-A158-10A TCGA-E2-A158-10A-01D-A12A-01 933cc04f-f78c-4199-8700-10c1b44596c1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B02_741474.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A158 TCGA-E2-A158-10A TCGA-E2-A158-10A-01D-A12A-01 933cc04f-f78c-4199-8700-10c1b44596c1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B02_741474.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A158 TCGA-E2-A158-10A TCGA-E2-A158-10A-01D-A12A-01 933cc04f-f78c-4199-8700-10c1b44596c1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B02_741474.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A158 TCGA-E2-A158-10A TCGA-E2-A158-10A-01D-A12A-01 933cc04f-f78c-4199-8700-10c1b44596c1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B02_741474.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A158 TCGA-E2-A158-10A TCGA-E2-A158-10A-01D-A12B-09 671469b6-2cc7-4236-95d3-3e3f73e08ea3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A158.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A158 TCGA-E2-A158-10A TCGA-E2-A158-10A-01D-A12B-09 671469b6-2cc7-4236-95d3-3e3f73e08ea3 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A158 TCGA-E2-A158-10A TCGA-E2-A158-10A-01W-A12S-09 75b8252c-7bc6-4b2c-aa19-a0488eb9f513 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A158.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22D-A129-02 206025d1-3c62-4d44-be0d-b390fa2d2e89 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A158.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22D-A12A-01 beef9449-c424-46b1-9244-a6b3898b3e56 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A158.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22D-A12A-01 beef9449-c424-46b1-9244-a6b3898b3e56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B11_741538.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22D-A12A-01 beef9449-c424-46b1-9244-a6b3898b3e56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B11_741538.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22D-A12A-01 beef9449-c424-46b1-9244-a6b3898b3e56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B11_741538.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22D-A12A-01 beef9449-c424-46b1-9244-a6b3898b3e56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B11_741538.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22D-A12A-01 beef9449-c424-46b1-9244-a6b3898b3e56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B11_741538.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22D-A12A-01 beef9449-c424-46b1-9244-a6b3898b3e56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B11_741538.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22D-A12A-01 beef9449-c424-46b1-9244-a6b3898b3e56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B11_741538.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22D-A12A-01 beef9449-c424-46b1-9244-a6b3898b3e56 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B11_741538.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22D-A12B-09 7d23b5bb-cacb-4c49-a6f0-b1293bccd644 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A158.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22D-A12B-09 7d23b5bb-cacb-4c49-a6f0-b1293bccd644 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22D-A12E-05 d8792dc4-31f5-4181-b09c-455b05c5f11f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A158.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22D-A12E-05 d8792dc4-31f5-4181-b09c-455b05c5f11f DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-E2-A158-11A-22D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22D-A12E-05 d8792dc4-31f5-4181-b09c-455b05c5f11f DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-E2-A158-11A-22D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22D-A12E-05 d8792dc4-31f5-4181-b09c-455b05c5f11f DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-E2-A158-11A-22D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22R-A12C-13 6457d46d-dc55-4187-a5c8-caed0a49437c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A158.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22R-A12C-13 6457d46d-dc55-4187-a5c8-caed0a49437c miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A158-11A-22R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22R-A12C-13 6457d46d-dc55-4187-a5c8-caed0a49437c miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A158-11A-22R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22R-A12D-07 5ba99650-56d2-4951-aa24-3d2fea3d1921 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A158.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22R-A12D-07 5ba99650-56d2-4951-aa24-3d2fea3d1921 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012871_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22R-A12D-07 5ba99650-56d2-4951-aa24-3d2fea3d1921 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012871_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22R-A12D-07 5ba99650-56d2-4951-aa24-3d2fea3d1921 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012871_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22R-A12D-07 5ba99650-56d2-4951-aa24-3d2fea3d1921 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_847407.TCGA-E2-A158-11A-22R-A12D-07.110629_UNC15-SN850_0090_AC03J3ABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22R-A12D-07 5ba99650-56d2-4951-aa24-3d2fea3d1921 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_847434.TCGA-E2-A158-11A-22R-A12D-07.110629_UNC15-SN850_0090_AC03J3ABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22R-A12D-07 5ba99650-56d2-4951-aa24-3d2fea3d1921 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_847572.TCGA-E2-A158-11A-22R-A12D-07.110629_UNC15-SN850_0090_AC03J3ABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A158 TCGA-E2-A158-11A TCGA-E2-A158-11A-22W-A12S-09 dbddea5d-3ad9-4296-9c7f-e8df23ae9af1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A158.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11D-A10X-02 08be154a-c0a8-4dc5-8fdf-3978f0a95754 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A159.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11D-A10Y-09 757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A159.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11D-A10Y-09 757c8a2d-90cf-4dab-a4dd-45f3cbdeaeeb Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11D-A111-01 c14c922b-4900-455a-8bf9-36021ff843aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A159.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11D-A111-01 c14c922b-4900-455a-8bf9-36021ff843aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D02_735274.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11D-A111-01 c14c922b-4900-455a-8bf9-36021ff843aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D02_735274.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11D-A111-01 c14c922b-4900-455a-8bf9-36021ff843aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D02_735274.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11D-A111-01 c14c922b-4900-455a-8bf9-36021ff843aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D02_735274.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11D-A111-01 c14c922b-4900-455a-8bf9-36021ff843aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D02_735274.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11D-A111-01 c14c922b-4900-455a-8bf9-36021ff843aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D02_735274.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11D-A111-01 c14c922b-4900-455a-8bf9-36021ff843aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D02_735274.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11D-A111-01 c14c922b-4900-455a-8bf9-36021ff843aa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_D02_735274.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11D-A112-05 a62a25fb-a0f1-40c1-9fb3-7478080dbb14 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A159.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11D-A112-05 a62a25fb-a0f1-40c1-9fb3-7478080dbb14 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-E2-A159-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11D-A112-05 a62a25fb-a0f1-40c1-9fb3-7478080dbb14 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-E2-A159-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11D-A112-05 a62a25fb-a0f1-40c1-9fb3-7478080dbb14 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-E2-A159-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11R-A114-13 d2064eb5-15ce-4799-981c-b745bc80d1f6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A159.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11R-A114-13 d2064eb5-15ce-4799-981c-b745bc80d1f6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A159-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11R-A114-13 d2064eb5-15ce-4799-981c-b745bc80d1f6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A159-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11R-A115-07 95c7abfa-a417-4d81-96c2-a952a081d997 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A159.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11R-A115-07 95c7abfa-a417-4d81-96c2-a952a081d997 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012817_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11R-A115-07 95c7abfa-a417-4d81-96c2-a952a081d997 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012817_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11R-A115-07 95c7abfa-a417-4d81-96c2-a952a081d997 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012817_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11R-A115-07 95c7abfa-a417-4d81-96c2-a952a081d997 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421495.TCGA-E2-A159-01A-11R-A115-07.110527_UNC10-SN254_0225_BD0CVWABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11R-A115-07 95c7abfa-a417-4d81-96c2-a952a081d997 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421498.TCGA-E2-A159-01A-11R-A115-07.110527_UNC10-SN254_0225_BD0CVWABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11R-A115-07 95c7abfa-a417-4d81-96c2-a952a081d997 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421504.TCGA-E2-A159-01A-11R-A115-07.110527_UNC10-SN254_0225_BD0CVWABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A159 TCGA-E2-A159-01A TCGA-E2-A159-01A-11W-A12T-09 f6d8997f-50b6-426e-9b01-1a8741bea936 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A159.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A159 TCGA-E2-A159-10A TCGA-E2-A159-10A-01D-A10Z-02 325d6025-4a55-4c66-965d-c542dee03c82 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A159.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A159 TCGA-E2-A159-10A TCGA-E2-A159-10A-01D-A110-09 deb6d361-2e35-4b88-8f3b-db1382e05f18 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A159.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A159 TCGA-E2-A159-10A TCGA-E2-A159-10A-01D-A110-09 deb6d361-2e35-4b88-8f3b-db1382e05f18 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A159 TCGA-E2-A159-10A TCGA-E2-A159-10A-01D-A113-01 cd0a8b7b-8240-475c-b9ca-e4a6a9e324e9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A159.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A159 TCGA-E2-A159-10A TCGA-E2-A159-10A-01W-A12U-09 bedfa020-3939-4df9-893c-cc584cdd6b63 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A159.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11D-A129-02 dfe10bda-e373-4535-8ca9-8e2628777928 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11D-A12A-01 42063455-e17c-42aa-a825-71b32c84437f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11D-A12A-01 42063455-e17c-42aa-a825-71b32c84437f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D08_741406.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11D-A12A-01 42063455-e17c-42aa-a825-71b32c84437f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D08_741406.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11D-A12A-01 42063455-e17c-42aa-a825-71b32c84437f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D08_741406.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11D-A12A-01 42063455-e17c-42aa-a825-71b32c84437f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D08_741406.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11D-A12A-01 42063455-e17c-42aa-a825-71b32c84437f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D08_741406.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11D-A12A-01 42063455-e17c-42aa-a825-71b32c84437f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D08_741406.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11D-A12A-01 42063455-e17c-42aa-a825-71b32c84437f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D08_741406.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11D-A12A-01 42063455-e17c-42aa-a825-71b32c84437f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D08_741406.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11D-A12B-09 b7e3eff1-65d5-491f-a726-35dc6752b370 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11D-A12B-09 b7e3eff1-65d5-491f-a726-35dc6752b370 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11D-A12E-05 5cdd5e8e-7402-439e-9463-6d6f35f08ff5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11D-A12E-05 5cdd5e8e-7402-439e-9463-6d6f35f08ff5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-E2-A15A-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11D-A12E-05 5cdd5e8e-7402-439e-9463-6d6f35f08ff5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-E2-A15A-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11D-A12E-05 5cdd5e8e-7402-439e-9463-6d6f35f08ff5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-E2-A15A-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11R-A12C-13 7deda721-08e7-49c8-91f6-7d0e663ba602 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11R-A12C-13 7deda721-08e7-49c8-91f6-7d0e663ba602 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15A-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11R-A12C-13 7deda721-08e7-49c8-91f6-7d0e663ba602 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15A-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11R-A12D-07 a4754430-f713-4aeb-998c-0f470a5549d1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11R-A12D-07 a4754430-f713-4aeb-998c-0f470a5549d1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012893_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11R-A12D-07 a4754430-f713-4aeb-998c-0f470a5549d1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012893_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11R-A12D-07 a4754430-f713-4aeb-998c-0f470a5549d1 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012893_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11R-A12D-07 a4754430-f713-4aeb-998c-0f470a5549d1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437789.TCGA-E2-A15A-01A-11R-A12D-07.110718_UNC12-SN629_0110_AB0AR8ABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11R-A12D-07 a4754430-f713-4aeb-998c-0f470a5549d1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437809.TCGA-E2-A15A-01A-11R-A12D-07.110718_UNC12-SN629_0110_AB0AR8ABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11R-A12D-07 a4754430-f713-4aeb-998c-0f470a5549d1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437899.TCGA-E2-A15A-01A-11R-A12D-07.110718_UNC12-SN629_0110_AB0AR8ABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15A TCGA-E2-A15A-01A TCGA-E2-A15A-01A-11W-A12S-09 58531bcc-8bde-49de-9de3-7aa54b95ec0a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11D-A129-02 ba040690-054d-4241-9a89-5ff6d966f54d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11D-A12A-01 8444c824-a5d8-4d12-a94e-10875f0bbc4e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11D-A12A-01 8444c824-a5d8-4d12-a94e-10875f0bbc4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A07_741428.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11D-A12A-01 8444c824-a5d8-4d12-a94e-10875f0bbc4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A07_741428.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11D-A12A-01 8444c824-a5d8-4d12-a94e-10875f0bbc4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A07_741428.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11D-A12A-01 8444c824-a5d8-4d12-a94e-10875f0bbc4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A07_741428.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11D-A12A-01 8444c824-a5d8-4d12-a94e-10875f0bbc4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A07_741428.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11D-A12A-01 8444c824-a5d8-4d12-a94e-10875f0bbc4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A07_741428.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11D-A12A-01 8444c824-a5d8-4d12-a94e-10875f0bbc4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A07_741428.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11D-A12A-01 8444c824-a5d8-4d12-a94e-10875f0bbc4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A07_741428.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11D-A12B-09 9e666ddd-a365-48e4-950d-709a0ecc78a9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11D-A12B-09 9e666ddd-a365-48e4-950d-709a0ecc78a9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11D-A12E-05 5795da2b-4ad7-4812-a923-a0f027119c33 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11D-A12E-05 5795da2b-4ad7-4812-a923-a0f027119c33 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-E2-A15A-06A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11D-A12E-05 5795da2b-4ad7-4812-a923-a0f027119c33 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-E2-A15A-06A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11D-A12E-05 5795da2b-4ad7-4812-a923-a0f027119c33 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-E2-A15A-06A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11R-A12C-13 84ef1ac4-0e14-45fd-aaef-c46fb8a2c83f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11R-A12C-13 84ef1ac4-0e14-45fd-aaef-c46fb8a2c83f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15A-06A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11R-A12C-13 84ef1ac4-0e14-45fd-aaef-c46fb8a2c83f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15A-06A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11R-A12D-07 e55bc0c9-ee0f-4efb-8024-3baed3c24080 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11R-A12D-07 e55bc0c9-ee0f-4efb-8024-3baed3c24080 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012879_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11R-A12D-07 e55bc0c9-ee0f-4efb-8024-3baed3c24080 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012879_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11R-A12D-07 e55bc0c9-ee0f-4efb-8024-3baed3c24080 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012879_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11R-A12D-07 e55bc0c9-ee0f-4efb-8024-3baed3c24080 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437796.TCGA-E2-A15A-06A-11R-A12D-07.110718_UNC12-SN629_0110_AB0AR8ABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11R-A12D-07 e55bc0c9-ee0f-4efb-8024-3baed3c24080 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437801.TCGA-E2-A15A-06A-11R-A12D-07.110718_UNC12-SN629_0110_AB0AR8ABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11R-A12D-07 e55bc0c9-ee0f-4efb-8024-3baed3c24080 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437898.TCGA-E2-A15A-06A-11R-A12D-07.110718_UNC12-SN629_0110_AB0AR8ABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15A TCGA-E2-A15A-06A TCGA-E2-A15A-06A-11W-A12S-09 2d7c3a2d-e640-4928-b558-d8394392760b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15A TCGA-E2-A15A-10A TCGA-E2-A15A-10A-01D-A129-02 64dfbb48-d11d-4cdf-b5b8-bd017900bd9f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15A TCGA-E2-A15A-10A TCGA-E2-A15A-10A-01D-A12A-01 17d46ceb-2778-4b8a-8868-bfbe7b133953 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15A TCGA-E2-A15A-10A TCGA-E2-A15A-10A-01D-A12A-01 17d46ceb-2778-4b8a-8868-bfbe7b133953 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F11_741412.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A15A TCGA-E2-A15A-10A TCGA-E2-A15A-10A-01D-A12A-01 17d46ceb-2778-4b8a-8868-bfbe7b133953 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F11_741412.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15A TCGA-E2-A15A-10A TCGA-E2-A15A-10A-01D-A12A-01 17d46ceb-2778-4b8a-8868-bfbe7b133953 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F11_741412.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15A TCGA-E2-A15A-10A TCGA-E2-A15A-10A-01D-A12A-01 17d46ceb-2778-4b8a-8868-bfbe7b133953 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F11_741412.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15A TCGA-E2-A15A-10A TCGA-E2-A15A-10A-01D-A12A-01 17d46ceb-2778-4b8a-8868-bfbe7b133953 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F11_741412.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15A TCGA-E2-A15A-10A TCGA-E2-A15A-10A-01D-A12A-01 17d46ceb-2778-4b8a-8868-bfbe7b133953 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F11_741412.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15A TCGA-E2-A15A-10A TCGA-E2-A15A-10A-01D-A12A-01 17d46ceb-2778-4b8a-8868-bfbe7b133953 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F11_741412.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15A TCGA-E2-A15A-10A TCGA-E2-A15A-10A-01D-A12A-01 17d46ceb-2778-4b8a-8868-bfbe7b133953 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F11_741412.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A15A TCGA-E2-A15A-10A TCGA-E2-A15A-10A-01D-A12B-09 e33c2754-8dec-4bab-b626-1886a5756536 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15A TCGA-E2-A15A-10A TCGA-E2-A15A-10A-01D-A12B-09 e33c2754-8dec-4bab-b626-1886a5756536 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15A TCGA-E2-A15A-10A TCGA-E2-A15A-10A-01W-A12S-09 0d08e3c9-4d58-4aa8-a743-32372428d970 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31D-A129-02 e0696dc7-49b2-4d80-87f0-22e3e69dbc8a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31D-A12A-01 42eb6aaf-02b1-4f22-b5d2-7c871ca4d516 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31D-A12A-01 42eb6aaf-02b1-4f22-b5d2-7c871ca4d516 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D12_741434.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31D-A12A-01 42eb6aaf-02b1-4f22-b5d2-7c871ca4d516 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D12_741434.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31D-A12A-01 42eb6aaf-02b1-4f22-b5d2-7c871ca4d516 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D12_741434.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31D-A12A-01 42eb6aaf-02b1-4f22-b5d2-7c871ca4d516 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D12_741434.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31D-A12A-01 42eb6aaf-02b1-4f22-b5d2-7c871ca4d516 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D12_741434.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31D-A12A-01 42eb6aaf-02b1-4f22-b5d2-7c871ca4d516 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D12_741434.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31D-A12A-01 42eb6aaf-02b1-4f22-b5d2-7c871ca4d516 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D12_741434.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31D-A12A-01 42eb6aaf-02b1-4f22-b5d2-7c871ca4d516 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D12_741434.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31D-A12B-09 10c594a1-0843-4740-9d96-00211a9509fb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31D-A12B-09 10c594a1-0843-4740-9d96-00211a9509fb Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31D-A12E-05 cdb1e827-7745-4b50-9541-7fbce9bf1288 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31D-A12E-05 cdb1e827-7745-4b50-9541-7fbce9bf1288 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-E2-A15C-01A-31D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31D-A12E-05 cdb1e827-7745-4b50-9541-7fbce9bf1288 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-E2-A15C-01A-31D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31D-A12E-05 cdb1e827-7745-4b50-9541-7fbce9bf1288 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-E2-A15C-01A-31D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31R-A12C-13 278737d7-c5fd-48d4-aade-bd0d8cfee37e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31R-A12C-13 278737d7-c5fd-48d4-aade-bd0d8cfee37e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15C-01A-31R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31R-A12C-13 278737d7-c5fd-48d4-aade-bd0d8cfee37e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15C-01A-31R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31R-A12D-07 1a77082d-f130-436b-9028-23c8dd9dc565 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31R-A12D-07 1a77082d-f130-436b-9028-23c8dd9dc565 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012911_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31R-A12D-07 1a77082d-f130-436b-9028-23c8dd9dc565 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012911_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31R-A12D-07 1a77082d-f130-436b-9028-23c8dd9dc565 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012911_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31R-A12D-07 1a77082d-f130-436b-9028-23c8dd9dc565 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437653.TCGA-E2-A15C-01A-31R-A12D-07.110718_UNC12-SN629_0110_AB0AR8ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31R-A12D-07 1a77082d-f130-436b-9028-23c8dd9dc565 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437660.TCGA-E2-A15C-01A-31R-A12D-07.110718_UNC12-SN629_0110_AB0AR8ABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31R-A12D-07 1a77082d-f130-436b-9028-23c8dd9dc565 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437745.TCGA-E2-A15C-01A-31R-A12D-07.110718_UNC12-SN629_0110_AB0AR8ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15C TCGA-E2-A15C-01A TCGA-E2-A15C-01A-31W-A12S-09 024af7a1-f497-49a7-85c7-d10e5f541f84 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15C TCGA-E2-A15C-10A TCGA-E2-A15C-10A-01D-A129-02 c8299a30-2b57-4d54-8db5-7c48bb65b506 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15C TCGA-E2-A15C-10A TCGA-E2-A15C-10A-01D-A12A-01 eaabd5d3-6a48-4977-8e64-811f7a153ce7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15C TCGA-E2-A15C-10A TCGA-E2-A15C-10A-01D-A12A-01 eaabd5d3-6a48-4977-8e64-811f7a153ce7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B07_741484.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A15C TCGA-E2-A15C-10A TCGA-E2-A15C-10A-01D-A12A-01 eaabd5d3-6a48-4977-8e64-811f7a153ce7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B07_741484.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15C TCGA-E2-A15C-10A TCGA-E2-A15C-10A-01D-A12A-01 eaabd5d3-6a48-4977-8e64-811f7a153ce7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B07_741484.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15C TCGA-E2-A15C-10A TCGA-E2-A15C-10A-01D-A12A-01 eaabd5d3-6a48-4977-8e64-811f7a153ce7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B07_741484.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15C TCGA-E2-A15C-10A TCGA-E2-A15C-10A-01D-A12A-01 eaabd5d3-6a48-4977-8e64-811f7a153ce7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B07_741484.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15C TCGA-E2-A15C-10A TCGA-E2-A15C-10A-01D-A12A-01 eaabd5d3-6a48-4977-8e64-811f7a153ce7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B07_741484.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15C TCGA-E2-A15C-10A TCGA-E2-A15C-10A-01D-A12A-01 eaabd5d3-6a48-4977-8e64-811f7a153ce7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B07_741484.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15C TCGA-E2-A15C-10A TCGA-E2-A15C-10A-01D-A12A-01 eaabd5d3-6a48-4977-8e64-811f7a153ce7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B07_741484.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A15C TCGA-E2-A15C-10A TCGA-E2-A15C-10A-01D-A12B-09 3ec15582-48e3-4bb5-bdfe-7c909a259130 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15C TCGA-E2-A15C-10A TCGA-E2-A15C-10A-01D-A12B-09 3ec15582-48e3-4bb5-bdfe-7c909a259130 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15C TCGA-E2-A15C-10A TCGA-E2-A15C-10A-01W-A12S-09 4bb49632-6776-4c07-9df7-00c29f3f346f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15C.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15D TCGA-E2-A15D-01A TCGA-E2-A15D-01A-11D-A10X-02 290e580f-f121-49fa-8aa5-fe7566c652ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15D TCGA-E2-A15D-01A TCGA-E2-A15D-01A-11D-A10Y-09 891295d6-4dd0-4ab4-bbce-13da7f3c30d0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15D TCGA-E2-A15D-01A TCGA-E2-A15D-01A-11D-A10Y-09 891295d6-4dd0-4ab4-bbce-13da7f3c30d0 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15D TCGA-E2-A15D-01A TCGA-E2-A15D-01A-11D-A111-01 7266b08c-75d0-4307-9852-73fc482f5644 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15D TCGA-E2-A15D-01A TCGA-E2-A15D-01A-11D-A112-05 3568e01c-48ad-4b7d-9ffe-12e146ad4990 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15D TCGA-E2-A15D-01A TCGA-E2-A15D-01A-11D-A112-05 3568e01c-48ad-4b7d-9ffe-12e146ad4990 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-E2-A15D-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-E2-A15D TCGA-E2-A15D-01A TCGA-E2-A15D-01A-11D-A112-05 3568e01c-48ad-4b7d-9ffe-12e146ad4990 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-E2-A15D-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-E2-A15D TCGA-E2-A15D-01A TCGA-E2-A15D-01A-11D-A112-05 3568e01c-48ad-4b7d-9ffe-12e146ad4990 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-E2-A15D-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-E2-A15D TCGA-E2-A15D-01A TCGA-E2-A15D-01A-11R-A114-13 8d304d19-99a0-4958-911c-c859d433e57b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15D TCGA-E2-A15D-01A TCGA-E2-A15D-01A-11R-A114-13 8d304d19-99a0-4958-911c-c859d433e57b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15D-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15D TCGA-E2-A15D-01A TCGA-E2-A15D-01A-11R-A114-13 8d304d19-99a0-4958-911c-c859d433e57b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15D-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15D TCGA-E2-A15D-01A TCGA-E2-A15D-01A-11R-A115-07 b58514d7-7785-497d-ba94-165ee0a1b941 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15D TCGA-E2-A15D-01A TCGA-E2-A15D-01A-11R-A115-07 b58514d7-7785-497d-ba94-165ee0a1b941 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012828_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-E2-A15D TCGA-E2-A15D-01A TCGA-E2-A15D-01A-11R-A115-07 b58514d7-7785-497d-ba94-165ee0a1b941 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012828_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-E2-A15D TCGA-E2-A15D-01A TCGA-E2-A15D-01A-11R-A115-07 b58514d7-7785-497d-ba94-165ee0a1b941 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012828_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-E2-A15D TCGA-E2-A15D-01A TCGA-E2-A15D-01A-11R-A115-07 b58514d7-7785-497d-ba94-165ee0a1b941 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421395.TCGA-E2-A15D-01A-11R-A115-07.110527_UNC10-SN254_0225_BD0CVWABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15D TCGA-E2-A15D-01A TCGA-E2-A15D-01A-11R-A115-07 b58514d7-7785-497d-ba94-165ee0a1b941 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421410.TCGA-E2-A15D-01A-11R-A115-07.110527_UNC10-SN254_0225_BD0CVWABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15D TCGA-E2-A15D-01A TCGA-E2-A15D-01A-11R-A115-07 b58514d7-7785-497d-ba94-165ee0a1b941 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421421.TCGA-E2-A15D-01A-11R-A115-07.110527_UNC10-SN254_0225_BD0CVWABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15D TCGA-E2-A15D-01A TCGA-E2-A15D-01A-11W-A12T-09 f06fdd1a-9720-480a-a1eb-35301472bd94 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15D TCGA-E2-A15D-10A TCGA-E2-A15D-10A-01D-A10Z-02 f4a4cb18-e3a7-462d-a970-bf644517db09 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15D TCGA-E2-A15D-10A TCGA-E2-A15D-10A-01D-A110-09 41e1ad36-7a9b-4046-b493-742e462fde54 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15D TCGA-E2-A15D-10A TCGA-E2-A15D-10A-01D-A110-09 41e1ad36-7a9b-4046-b493-742e462fde54 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15D TCGA-E2-A15D-10A TCGA-E2-A15D-10A-01D-A113-01 eed95dea-7edd-4515-9f65-1978bd1e7677 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15D TCGA-E2-A15D-10A TCGA-E2-A15D-10A-01D-A113-01 eed95dea-7edd-4515-9f65-1978bd1e7677 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E12_735204.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-E2-A15D TCGA-E2-A15D-10A TCGA-E2-A15D-10A-01D-A113-01 eed95dea-7edd-4515-9f65-1978bd1e7677 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E12_735204.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15D TCGA-E2-A15D-10A TCGA-E2-A15D-10A-01D-A113-01 eed95dea-7edd-4515-9f65-1978bd1e7677 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E12_735204.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15D TCGA-E2-A15D-10A TCGA-E2-A15D-10A-01D-A113-01 eed95dea-7edd-4515-9f65-1978bd1e7677 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E12_735204.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15D TCGA-E2-A15D-10A TCGA-E2-A15D-10A-01D-A113-01 eed95dea-7edd-4515-9f65-1978bd1e7677 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E12_735204.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15D TCGA-E2-A15D-10A TCGA-E2-A15D-10A-01D-A113-01 eed95dea-7edd-4515-9f65-1978bd1e7677 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E12_735204.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15D TCGA-E2-A15D-10A TCGA-E2-A15D-10A-01D-A113-01 eed95dea-7edd-4515-9f65-1978bd1e7677 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E12_735204.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15D TCGA-E2-A15D-10A TCGA-E2-A15D-10A-01D-A113-01 eed95dea-7edd-4515-9f65-1978bd1e7677 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E12_735204.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-E2-A15D TCGA-E2-A15D-10A TCGA-E2-A15D-10A-01W-A12U-09 37ee041b-bacf-47bc-83e9-9aa72755a828 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15D.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15E TCGA-E2-A15E-01A TCGA-E2-A15E-01A-11D-A129-02 78219f7e-0d94-400e-812c-a754c63f2bd7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15E TCGA-E2-A15E-01A TCGA-E2-A15E-01A-11D-A12A-01 1c91adc5-4b1d-49e0-b2d3-eb6191a80f8f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15E TCGA-E2-A15E-01A TCGA-E2-A15E-01A-11D-A12A-01 1c91adc5-4b1d-49e0-b2d3-eb6191a80f8f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E02_741534.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A15E TCGA-E2-A15E-01A TCGA-E2-A15E-01A-11D-A12A-01 1c91adc5-4b1d-49e0-b2d3-eb6191a80f8f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E02_741534.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15E TCGA-E2-A15E-01A TCGA-E2-A15E-01A-11D-A12A-01 1c91adc5-4b1d-49e0-b2d3-eb6191a80f8f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E02_741534.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15E TCGA-E2-A15E-01A TCGA-E2-A15E-01A-11D-A12A-01 1c91adc5-4b1d-49e0-b2d3-eb6191a80f8f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E02_741534.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15E TCGA-E2-A15E-01A TCGA-E2-A15E-01A-11D-A12A-01 1c91adc5-4b1d-49e0-b2d3-eb6191a80f8f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E02_741534.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15E TCGA-E2-A15E-01A TCGA-E2-A15E-01A-11D-A12A-01 1c91adc5-4b1d-49e0-b2d3-eb6191a80f8f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E02_741534.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15E TCGA-E2-A15E-01A TCGA-E2-A15E-01A-11D-A12A-01 1c91adc5-4b1d-49e0-b2d3-eb6191a80f8f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E02_741534.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15E TCGA-E2-A15E-01A TCGA-E2-A15E-01A-11D-A12A-01 1c91adc5-4b1d-49e0-b2d3-eb6191a80f8f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E02_741534.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A15E TCGA-E2-A15E-01A TCGA-E2-A15E-01A-11D-A12B-09 c6f107df-1186-4d6d-b5b5-2393e9369dd1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15E TCGA-E2-A15E-01A TCGA-E2-A15E-01A-11D-A12B-09 c6f107df-1186-4d6d-b5b5-2393e9369dd1 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15E TCGA-E2-A15E-01A TCGA-E2-A15E-01A-11D-A12E-05 c27c87cf-61c9-467c-b6b5-355373b69bcc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15E TCGA-E2-A15E-01A TCGA-E2-A15E-01A-11D-A12E-05 c27c87cf-61c9-467c-b6b5-355373b69bcc DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-E2-A15E-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-E2-A15E TCGA-E2-A15E-01A TCGA-E2-A15E-01A-11D-A12E-05 c27c87cf-61c9-467c-b6b5-355373b69bcc DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-E2-A15E-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-E2-A15E TCGA-E2-A15E-01A TCGA-E2-A15E-01A-11D-A12E-05 c27c87cf-61c9-467c-b6b5-355373b69bcc DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-E2-A15E-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-E2-A15E TCGA-E2-A15E-01A TCGA-E2-A15E-01A-11D-A19H-09 92b515eb-4036-4dad-9cca-dfb59c2ef26e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15E TCGA-E2-A15E-01A TCGA-E2-A15E-01A-11R-A12C-13 0578b5b3-0d03-426f-96f7-a93baf546172 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15E TCGA-E2-A15E-01A TCGA-E2-A15E-01A-11R-A12C-13 0578b5b3-0d03-426f-96f7-a93baf546172 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15E-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15E TCGA-E2-A15E-01A TCGA-E2-A15E-01A-11R-A12C-13 0578b5b3-0d03-426f-96f7-a93baf546172 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15E-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15E TCGA-E2-A15E-01A TCGA-E2-A15E-01A-11R-A12D-07 42ba8e87-8d37-4cbd-82f0-bca0cbe5dcd3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15E TCGA-E2-A15E-01A TCGA-E2-A15E-01A-11R-A12D-07 42ba8e87-8d37-4cbd-82f0-bca0cbe5dcd3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012919_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A15E TCGA-E2-A15E-01A TCGA-E2-A15E-01A-11R-A12D-07 42ba8e87-8d37-4cbd-82f0-bca0cbe5dcd3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012919_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A15E TCGA-E2-A15E-01A TCGA-E2-A15E-01A-11R-A12D-07 42ba8e87-8d37-4cbd-82f0-bca0cbe5dcd3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012919_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A15E TCGA-E2-A15E-01A TCGA-E2-A15E-01A-11W-A12S-09 94ba1434-f12c-45ba-908c-1d89cc600af9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11D-A129-02 3ce8b474-9267-41ee-8d99-136e503a7e4f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11D-A12A-01 6c2fdfa7-33a8-462e-9d27-8ed7079938d7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11D-A12A-01 6c2fdfa7-33a8-462e-9d27-8ed7079938d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B10_741426.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11D-A12A-01 6c2fdfa7-33a8-462e-9d27-8ed7079938d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B10_741426.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11D-A12A-01 6c2fdfa7-33a8-462e-9d27-8ed7079938d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B10_741426.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11D-A12A-01 6c2fdfa7-33a8-462e-9d27-8ed7079938d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B10_741426.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11D-A12A-01 6c2fdfa7-33a8-462e-9d27-8ed7079938d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B10_741426.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11D-A12A-01 6c2fdfa7-33a8-462e-9d27-8ed7079938d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B10_741426.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11D-A12A-01 6c2fdfa7-33a8-462e-9d27-8ed7079938d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B10_741426.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11D-A12A-01 6c2fdfa7-33a8-462e-9d27-8ed7079938d7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_B10_741426.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11D-A12B-09 d3d3c80e-c6f3-4fe8-809b-e710755e1200 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11D-A12B-09 d3d3c80e-c6f3-4fe8-809b-e710755e1200 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11D-A12E-05 6eab61f4-8320-40b8-bd23-2d07431f32e8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11D-A12E-05 6eab61f4-8320-40b8-bd23-2d07431f32e8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-E2-A15E-06A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11D-A12E-05 6eab61f4-8320-40b8-bd23-2d07431f32e8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-E2-A15E-06A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11D-A12E-05 6eab61f4-8320-40b8-bd23-2d07431f32e8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-E2-A15E-06A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11D-A19H-09 dabb5a94-9706-4429-8db0-c328e2004340 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11R-A12C-13 1f404e8f-0cd7-4be8-89ab-b4c1c99b42dd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11R-A12C-13 1f404e8f-0cd7-4be8-89ab-b4c1c99b42dd miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15E-06A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11R-A12C-13 1f404e8f-0cd7-4be8-89ab-b4c1c99b42dd miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15E-06A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11R-A12D-07 8131b824-c3db-4c83-99b9-aa0c60747c5d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11R-A12D-07 8131b824-c3db-4c83-99b9-aa0c60747c5d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012887_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11R-A12D-07 8131b824-c3db-4c83-99b9-aa0c60747c5d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012887_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11R-A12D-07 8131b824-c3db-4c83-99b9-aa0c60747c5d Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012887_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11R-A12D-07 8131b824-c3db-4c83-99b9-aa0c60747c5d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437645.TCGA-E2-A15E-06A-11R-A12D-07.110718_UNC12-SN629_0110_AB0AR8ABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11R-A12D-07 8131b824-c3db-4c83-99b9-aa0c60747c5d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437664.TCGA-E2-A15E-06A-11R-A12D-07.110718_UNC12-SN629_0110_AB0AR8ABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11R-A12D-07 8131b824-c3db-4c83-99b9-aa0c60747c5d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_437746.TCGA-E2-A15E-06A-11R-A12D-07.110718_UNC12-SN629_0110_AB0AR8ABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15E TCGA-E2-A15E-06A TCGA-E2-A15E-06A-11W-A12S-09 c764714e-faab-4b3e-b310-26c3ececeabe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15E TCGA-E2-A15E-10A TCGA-E2-A15E-10A-01D-A129-02 c2c5a068-bfdd-46a6-86d6-b9162172478e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15E TCGA-E2-A15E-10A TCGA-E2-A15E-10A-01D-A12A-01 8fea0497-c1e9-4327-9454-7ab9f07a1a5d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15E TCGA-E2-A15E-10A TCGA-E2-A15E-10A-01D-A12A-01 8fea0497-c1e9-4327-9454-7ab9f07a1a5d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E05_741408.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A15E TCGA-E2-A15E-10A TCGA-E2-A15E-10A-01D-A12A-01 8fea0497-c1e9-4327-9454-7ab9f07a1a5d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E05_741408.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15E TCGA-E2-A15E-10A TCGA-E2-A15E-10A-01D-A12A-01 8fea0497-c1e9-4327-9454-7ab9f07a1a5d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E05_741408.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15E TCGA-E2-A15E-10A TCGA-E2-A15E-10A-01D-A12A-01 8fea0497-c1e9-4327-9454-7ab9f07a1a5d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E05_741408.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15E TCGA-E2-A15E-10A TCGA-E2-A15E-10A-01D-A12A-01 8fea0497-c1e9-4327-9454-7ab9f07a1a5d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E05_741408.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15E TCGA-E2-A15E-10A TCGA-E2-A15E-10A-01D-A12A-01 8fea0497-c1e9-4327-9454-7ab9f07a1a5d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E05_741408.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15E TCGA-E2-A15E-10A TCGA-E2-A15E-10A-01D-A12A-01 8fea0497-c1e9-4327-9454-7ab9f07a1a5d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E05_741408.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15E TCGA-E2-A15E-10A TCGA-E2-A15E-10A-01D-A12A-01 8fea0497-c1e9-4327-9454-7ab9f07a1a5d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_E05_741408.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A15E TCGA-E2-A15E-10A TCGA-E2-A15E-10A-01D-A12B-09 1cdbe17e-c0ed-45a4-b4bb-6464cfb60817 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15E TCGA-E2-A15E-10A TCGA-E2-A15E-10A-01D-A12B-09 1cdbe17e-c0ed-45a4-b4bb-6464cfb60817 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15E TCGA-E2-A15E-10A TCGA-E2-A15E-10A-01D-A19H-09 f99107dc-06e1-495f-83c9-3e17dc858fe5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15E TCGA-E2-A15E-10A TCGA-E2-A15E-10A-01W-A12S-09 ca70187d-4eeb-42d0-aa89-5ef385cfa9ce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15F TCGA-E2-A15F-01A TCGA-E2-A15F-01A-11D-A10X-02 35950c11-7681-4016-a886-f2b2c7521780 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15F TCGA-E2-A15F-01A TCGA-E2-A15F-01A-11D-A10Y-09 33edf937-b09f-49ec-8f4c-e05dee7ece1f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15F TCGA-E2-A15F-01A TCGA-E2-A15F-01A-11D-A10Y-09 33edf937-b09f-49ec-8f4c-e05dee7ece1f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15F TCGA-E2-A15F-01A TCGA-E2-A15F-01A-11D-A111-01 4df297a3-8822-4df2-b0ef-77279e053b32 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15F TCGA-E2-A15F-01A TCGA-E2-A15F-01A-11D-A112-05 437f96e0-9d66-4da0-9a30-0ae29a4f851e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15F TCGA-E2-A15F-01A TCGA-E2-A15F-01A-11D-A112-05 437f96e0-9d66-4da0-9a30-0ae29a4f851e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-E2-A15F-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-E2-A15F TCGA-E2-A15F-01A TCGA-E2-A15F-01A-11D-A112-05 437f96e0-9d66-4da0-9a30-0ae29a4f851e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-E2-A15F-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-E2-A15F TCGA-E2-A15F-01A TCGA-E2-A15F-01A-11D-A112-05 437f96e0-9d66-4da0-9a30-0ae29a4f851e DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-E2-A15F-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-E2-A15F TCGA-E2-A15F-01A TCGA-E2-A15F-01A-11R-A114-13 2ebdbe46-d4e6-437e-aa38-96385f98d80d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15F TCGA-E2-A15F-01A TCGA-E2-A15F-01A-11R-A114-13 2ebdbe46-d4e6-437e-aa38-96385f98d80d miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15F-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15F TCGA-E2-A15F-01A TCGA-E2-A15F-01A-11R-A114-13 2ebdbe46-d4e6-437e-aa38-96385f98d80d miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15F-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15F TCGA-E2-A15F-01A TCGA-E2-A15F-01A-11R-A115-07 2e41bc6a-bece-4b6d-a646-be9b98707bba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15F TCGA-E2-A15F-01A TCGA-E2-A15F-01A-11R-A115-07 2e41bc6a-bece-4b6d-a646-be9b98707bba Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012839_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-E2-A15F TCGA-E2-A15F-01A TCGA-E2-A15F-01A-11R-A115-07 2e41bc6a-bece-4b6d-a646-be9b98707bba Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012839_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-E2-A15F TCGA-E2-A15F-01A TCGA-E2-A15F-01A-11R-A115-07 2e41bc6a-bece-4b6d-a646-be9b98707bba Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012839_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-E2-A15F TCGA-E2-A15F-01A TCGA-E2-A15F-01A-11W-A12T-09 7632deab-5687-46c7-a9c6-166dae628b50 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15F TCGA-E2-A15F-10A TCGA-E2-A15F-10A-01D-A10Z-02 b01deb47-4392-4df0-8b6c-1dcff04d037e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15F TCGA-E2-A15F-10A TCGA-E2-A15F-10A-01D-A110-09 282ccab4-f257-4ee5-832b-6b690291e6bb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15F TCGA-E2-A15F-10A TCGA-E2-A15F-10A-01D-A110-09 282ccab4-f257-4ee5-832b-6b690291e6bb Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15F TCGA-E2-A15F-10A TCGA-E2-A15F-10A-01D-A113-01 707ed5c4-9f91-41e0-9cb6-3e22b9cdb6ac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15F TCGA-E2-A15F-10A TCGA-E2-A15F-10A-01W-A12U-09 8e4effac-670b-4d58-9403-3f2b2ce2cb70 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15F.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11D-A129-02 30c7bc64-ab8f-4ff0-ad76-560810f01582 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11D-A12A-01 d0f71973-7cb2-4541-a0df-6e608af68899 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11D-A12A-01 d0f71973-7cb2-4541-a0df-6e608af68899 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H05_741448.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11D-A12A-01 d0f71973-7cb2-4541-a0df-6e608af68899 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H05_741448.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11D-A12A-01 d0f71973-7cb2-4541-a0df-6e608af68899 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H05_741448.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11D-A12A-01 d0f71973-7cb2-4541-a0df-6e608af68899 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H05_741448.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11D-A12A-01 d0f71973-7cb2-4541-a0df-6e608af68899 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H05_741448.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11D-A12A-01 d0f71973-7cb2-4541-a0df-6e608af68899 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H05_741448.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11D-A12A-01 d0f71973-7cb2-4541-a0df-6e608af68899 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H05_741448.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11D-A12A-01 d0f71973-7cb2-4541-a0df-6e608af68899 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H05_741448.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11D-A12B-09 d45bb60a-e73b-4b95-8637-e8d17fcca745 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11D-A12B-09 d45bb60a-e73b-4b95-8637-e8d17fcca745 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11D-A12E-05 50219e5e-a885-4d38-b89f-c222b0a28530 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11D-A12E-05 50219e5e-a885-4d38-b89f-c222b0a28530 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-E2-A15G-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11D-A12E-05 50219e5e-a885-4d38-b89f-c222b0a28530 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-E2-A15G-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11D-A12E-05 50219e5e-a885-4d38-b89f-c222b0a28530 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-E2-A15G-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11R-A12C-13 2d7222b2-a5fc-48c7-ad27-8fdc7b5f7b59 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11R-A12C-13 2d7222b2-a5fc-48c7-ad27-8fdc7b5f7b59 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15G-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11R-A12C-13 2d7222b2-a5fc-48c7-ad27-8fdc7b5f7b59 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15G-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11R-A12D-07 a88e6892-93fe-451f-9b7e-f6fe260ba9af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11R-A12D-07 a88e6892-93fe-451f-9b7e-f6fe260ba9af Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012924_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11R-A12D-07 a88e6892-93fe-451f-9b7e-f6fe260ba9af Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012924_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11R-A12D-07 a88e6892-93fe-451f-9b7e-f6fe260ba9af Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012924_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11R-A12D-07 a88e6892-93fe-451f-9b7e-f6fe260ba9af RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439418.TCGA-E2-A15G-01A-11R-A12D-07.110715_UNC14-SN744_0142_AB099EABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11R-A12D-07 a88e6892-93fe-451f-9b7e-f6fe260ba9af RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439491.TCGA-E2-A15G-01A-11R-A12D-07.110715_UNC14-SN744_0142_AB099EABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11R-A12D-07 a88e6892-93fe-451f-9b7e-f6fe260ba9af RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439565.TCGA-E2-A15G-01A-11R-A12D-07.110715_UNC14-SN744_0142_AB099EABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15G TCGA-E2-A15G-01A TCGA-E2-A15G-01A-11W-A12S-09 afec25af-7557-4c72-bf6d-00aacdb1329a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15G TCGA-E2-A15G-10A TCGA-E2-A15G-10A-01D-A129-02 aa2044dd-c619-445b-be21-43790cf1705d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15G TCGA-E2-A15G-10A TCGA-E2-A15G-10A-01D-A12A-01 e01f35c7-7964-465f-83c2-228cc8fb2876 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15G TCGA-E2-A15G-10A TCGA-E2-A15G-10A-01D-A12A-01 e01f35c7-7964-465f-83c2-228cc8fb2876 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C01_741518.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A15G TCGA-E2-A15G-10A TCGA-E2-A15G-10A-01D-A12A-01 e01f35c7-7964-465f-83c2-228cc8fb2876 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C01_741518.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15G TCGA-E2-A15G-10A TCGA-E2-A15G-10A-01D-A12A-01 e01f35c7-7964-465f-83c2-228cc8fb2876 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C01_741518.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15G TCGA-E2-A15G-10A TCGA-E2-A15G-10A-01D-A12A-01 e01f35c7-7964-465f-83c2-228cc8fb2876 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C01_741518.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15G TCGA-E2-A15G-10A TCGA-E2-A15G-10A-01D-A12A-01 e01f35c7-7964-465f-83c2-228cc8fb2876 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C01_741518.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15G TCGA-E2-A15G-10A TCGA-E2-A15G-10A-01D-A12A-01 e01f35c7-7964-465f-83c2-228cc8fb2876 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C01_741518.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15G TCGA-E2-A15G-10A TCGA-E2-A15G-10A-01D-A12A-01 e01f35c7-7964-465f-83c2-228cc8fb2876 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C01_741518.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15G TCGA-E2-A15G-10A TCGA-E2-A15G-10A-01D-A12A-01 e01f35c7-7964-465f-83c2-228cc8fb2876 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C01_741518.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A15G TCGA-E2-A15G-10A TCGA-E2-A15G-10A-01D-A12B-09 9b5d1a2f-ccca-45de-b995-85754015b39c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15G TCGA-E2-A15G-10A TCGA-E2-A15G-10A-01D-A12B-09 9b5d1a2f-ccca-45de-b995-85754015b39c Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15G TCGA-E2-A15G-10A TCGA-E2-A15G-10A-01W-A12S-09 e2123ea3-14d0-4d66-9a95-8eb6ecc1466d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11D-A129-02 683ec391-f4cb-4338-b8af-d1e633b76638 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11D-A12A-01 b23312bc-ad6f-4e38-83e3-c7459ceaf7bc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11D-A12A-01 b23312bc-ad6f-4e38-83e3-c7459ceaf7bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H04_741456.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11D-A12A-01 b23312bc-ad6f-4e38-83e3-c7459ceaf7bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H04_741456.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11D-A12A-01 b23312bc-ad6f-4e38-83e3-c7459ceaf7bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H04_741456.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11D-A12A-01 b23312bc-ad6f-4e38-83e3-c7459ceaf7bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H04_741456.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11D-A12A-01 b23312bc-ad6f-4e38-83e3-c7459ceaf7bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H04_741456.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11D-A12A-01 b23312bc-ad6f-4e38-83e3-c7459ceaf7bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H04_741456.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11D-A12A-01 b23312bc-ad6f-4e38-83e3-c7459ceaf7bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H04_741456.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11D-A12A-01 b23312bc-ad6f-4e38-83e3-c7459ceaf7bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_H04_741456.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11D-A12B-09 7875c5b3-ced2-4669-a3d5-45739b850af7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11D-A12B-09 7875c5b3-ced2-4669-a3d5-45739b850af7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11D-A12E-05 d9f8c3fc-5703-4b04-89d3-ae519137c980 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11D-A12E-05 d9f8c3fc-5703-4b04-89d3-ae519137c980 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-E2-A15H-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11D-A12E-05 d9f8c3fc-5703-4b04-89d3-ae519137c980 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-E2-A15H-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11D-A12E-05 d9f8c3fc-5703-4b04-89d3-ae519137c980 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-E2-A15H-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11D-A19F-05 8889ced6-9f24-4981-8045-f7b77efd4474 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11D-A19H-09 6d7f44df-e9f0-4542-a6d8-d14ee7804002 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11R-A12C-13 e10e1ecc-effe-4d9f-9d21-62b6d6b90226 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11R-A12C-13 e10e1ecc-effe-4d9f-9d21-62b6d6b90226 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15H-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11R-A12C-13 e10e1ecc-effe-4d9f-9d21-62b6d6b90226 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15H-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11R-A12D-07 75b2227e-0279-4dfb-a1a1-e64c53b48d7a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11R-A12D-07 75b2227e-0279-4dfb-a1a1-e64c53b48d7a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012935_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11R-A12D-07 75b2227e-0279-4dfb-a1a1-e64c53b48d7a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012935_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11R-A12D-07 75b2227e-0279-4dfb-a1a1-e64c53b48d7a Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012935_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11R-A12D-07 75b2227e-0279-4dfb-a1a1-e64c53b48d7a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439459.TCGA-E2-A15H-01A-11R-A12D-07.110715_UNC14-SN744_0142_AB099EABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11R-A12D-07 75b2227e-0279-4dfb-a1a1-e64c53b48d7a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439460.TCGA-E2-A15H-01A-11R-A12D-07.110715_UNC14-SN744_0142_AB099EABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11R-A12D-07 75b2227e-0279-4dfb-a1a1-e64c53b48d7a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_439472.TCGA-E2-A15H-01A-11R-A12D-07.110715_UNC14-SN744_0142_AB099EABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15H TCGA-E2-A15H-01A TCGA-E2-A15H-01A-11W-A12S-09 d654d718-bfe1-4fd7-ae18-7e93c919d87f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15H TCGA-E2-A15H-10A TCGA-E2-A15H-10A-01D-A129-02 94af8019-6865-4314-a827-cb411d29c100 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15H TCGA-E2-A15H-10A TCGA-E2-A15H-10A-01D-A12A-01 1884ea32-7d37-405e-8b10-59f372f2203b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15H TCGA-E2-A15H-10A TCGA-E2-A15H-10A-01D-A12A-01 1884ea32-7d37-405e-8b10-59f372f2203b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C06_741526.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A15H TCGA-E2-A15H-10A TCGA-E2-A15H-10A-01D-A12A-01 1884ea32-7d37-405e-8b10-59f372f2203b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C06_741526.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15H TCGA-E2-A15H-10A TCGA-E2-A15H-10A-01D-A12A-01 1884ea32-7d37-405e-8b10-59f372f2203b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C06_741526.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15H TCGA-E2-A15H-10A TCGA-E2-A15H-10A-01D-A12A-01 1884ea32-7d37-405e-8b10-59f372f2203b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C06_741526.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15H TCGA-E2-A15H-10A TCGA-E2-A15H-10A-01D-A12A-01 1884ea32-7d37-405e-8b10-59f372f2203b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C06_741526.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15H TCGA-E2-A15H-10A TCGA-E2-A15H-10A-01D-A12A-01 1884ea32-7d37-405e-8b10-59f372f2203b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C06_741526.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15H TCGA-E2-A15H-10A TCGA-E2-A15H-10A-01D-A12A-01 1884ea32-7d37-405e-8b10-59f372f2203b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C06_741526.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15H TCGA-E2-A15H-10A TCGA-E2-A15H-10A-01D-A12A-01 1884ea32-7d37-405e-8b10-59f372f2203b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C06_741526.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A15H TCGA-E2-A15H-10A TCGA-E2-A15H-10A-01D-A12B-09 3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15H TCGA-E2-A15H-10A TCGA-E2-A15H-10A-01D-A12B-09 3735d9c3-f6d1-45f4-b26b-3a3acfc31e1b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15H TCGA-E2-A15H-10A TCGA-E2-A15H-10A-01D-A19H-09 ccc8619f-c4ac-4cd9-9dab-83faaa59afc5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15H TCGA-E2-A15H-10A TCGA-E2-A15H-10A-01W-A12S-09 64acc70e-88bd-40f4-abf1-431135a64d88 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21D-A133-02 6aafd7fe-f77e-4533-b658-5936f14ad244 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21D-A134-01 db6a187b-083a-4f71-9d8b-f08b5f208d7e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21D-A134-01 db6a187b-083a-4f71-9d8b-f08b5f208d7e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G05_755836.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21D-A134-01 db6a187b-083a-4f71-9d8b-f08b5f208d7e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G05_755836.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21D-A134-01 db6a187b-083a-4f71-9d8b-f08b5f208d7e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G05_755836.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21D-A134-01 db6a187b-083a-4f71-9d8b-f08b5f208d7e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G05_755836.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21D-A134-01 db6a187b-083a-4f71-9d8b-f08b5f208d7e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G05_755836.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21D-A134-01 db6a187b-083a-4f71-9d8b-f08b5f208d7e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G05_755836.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21D-A134-01 db6a187b-083a-4f71-9d8b-f08b5f208d7e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G05_755836.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21D-A134-01 db6a187b-083a-4f71-9d8b-f08b5f208d7e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_G05_755836.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21D-A135-09 9bec02b4-7cf0-4797-b1ac-253ef78a34af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21D-A135-09 9bec02b4-7cf0-4797-b1ac-253ef78a34af Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21D-A138-05 749c6ff7-dd7a-4987-ad73-c36b75d6e857 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21D-A138-05 749c6ff7-dd7a-4987-ad73-c36b75d6e857 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324048_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21D-A138-05 749c6ff7-dd7a-4987-ad73-c36b75d6e857 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324048_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21D-A138-05 749c6ff7-dd7a-4987-ad73-c36b75d6e857 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-2.TCGA-E2-A15I-01A-21D-A138-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0 103 07-NOV-11 05.19.10.670000000 PM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21D-A138-05 749c6ff7-dd7a-4987-ad73-c36b75d6e857 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-3.TCGA-E2-A15I-01A-21D-A138-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0 103 07-NOV-11 05.59.32.897000000 PM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21R-A136-13 c451b391-d3ad-4f81-92b7-218dccb8bd44 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21R-A136-13 c451b391-d3ad-4f81-92b7-218dccb8bd44 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15I-01A-21R-A136-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21R-A136-13 c451b391-d3ad-4f81-92b7-218dccb8bd44 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15I-01A-21R-A136-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21R-A137-07 4f3a68ee-00c8-44bd-b9d6-f3fa6dc4084c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21R-A137-07 4f3a68ee-00c8-44bd-b9d6-f3fa6dc4084c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013080_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 103 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21R-A137-07 4f3a68ee-00c8-44bd-b9d6-f3fa6dc4084c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013080_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 103 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21R-A137-07 4f3a68ee-00c8-44bd-b9d6-f3fa6dc4084c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013080_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 103 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21R-A137-07 4f3a68ee-00c8-44bd-b9d6-f3fa6dc4084c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406779.TCGA-E2-A15I-01A-21R-A137-07.110725_UNC9-SN296_0208_AC0477ABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21R-A137-07 4f3a68ee-00c8-44bd-b9d6-f3fa6dc4084c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406892.TCGA-E2-A15I-01A-21R-A137-07.110725_UNC9-SN296_0208_AC0477ABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21R-A137-07 4f3a68ee-00c8-44bd-b9d6-f3fa6dc4084c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406953.TCGA-E2-A15I-01A-21R-A137-07.110725_UNC9-SN296_0208_AC0477ABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15I TCGA-E2-A15I-01A TCGA-E2-A15I-01A-21W-A14P-09 e05d44ad-f5cf-4851-b418-f57cdde344cc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A15I TCGA-E2-A15I-10A TCGA-E2-A15I-10A-01D-A133-02 5e0783e8-b5ac-40ae-8abc-ce3116068afa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A15I TCGA-E2-A15I-10A TCGA-E2-A15I-10A-01D-A134-01 1c7a52e4-8d0e-4078-a1f0-06354c9de508 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A15I TCGA-E2-A15I-10A TCGA-E2-A15I-10A-01D-A134-01 1c7a52e4-8d0e-4078-a1f0-06354c9de508 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D10_755922.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-E2-A15I TCGA-E2-A15I-10A TCGA-E2-A15I-10A-01D-A134-01 1c7a52e4-8d0e-4078-a1f0-06354c9de508 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D10_755922.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A15I TCGA-E2-A15I-10A TCGA-E2-A15I-10A-01D-A134-01 1c7a52e4-8d0e-4078-a1f0-06354c9de508 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D10_755922.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A15I TCGA-E2-A15I-10A TCGA-E2-A15I-10A-01D-A134-01 1c7a52e4-8d0e-4078-a1f0-06354c9de508 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D10_755922.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A15I TCGA-E2-A15I-10A TCGA-E2-A15I-10A-01D-A134-01 1c7a52e4-8d0e-4078-a1f0-06354c9de508 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D10_755922.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A15I TCGA-E2-A15I-10A TCGA-E2-A15I-10A-01D-A134-01 1c7a52e4-8d0e-4078-a1f0-06354c9de508 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D10_755922.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A15I TCGA-E2-A15I-10A TCGA-E2-A15I-10A-01D-A134-01 1c7a52e4-8d0e-4078-a1f0-06354c9de508 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D10_755922.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A15I TCGA-E2-A15I-10A TCGA-E2-A15I-10A-01D-A134-01 1c7a52e4-8d0e-4078-a1f0-06354c9de508 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_D10_755922.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-E2-A15I TCGA-E2-A15I-10A TCGA-E2-A15I-10A-01D-A135-09 bf856604-4326-4145-bc3c-137098338f61 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A15I TCGA-E2-A15I-10A TCGA-E2-A15I-10A-01D-A135-09 bf856604-4326-4145-bc3c-137098338f61 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 103 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15I TCGA-E2-A15I-10A TCGA-E2-A15I-10A-01W-A14P-09 d4beb3ba-604d-4493-8cdb-b58e15ffa34e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32D-A133-02 dfc44428-bb5d-4ff8-b390-eebaa2028c1f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32D-A134-01 525ba903-c7df-4bc3-acf6-4e85a4f3f1b3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32D-A134-01 525ba903-c7df-4bc3-acf6-4e85a4f3f1b3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B10_755918.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.103.1008.0 103 07-DEC-11 11.14.09.129000000 AM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32D-A134-01 525ba903-c7df-4bc3-acf6-4e85a4f3f1b3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B10_755918.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32D-A134-01 525ba903-c7df-4bc3-acf6-4e85a4f3f1b3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B10_755918.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32D-A134-01 525ba903-c7df-4bc3-acf6-4e85a4f3f1b3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B10_755918.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32D-A134-01 525ba903-c7df-4bc3-acf6-4e85a4f3f1b3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B10_755918.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32D-A134-01 525ba903-c7df-4bc3-acf6-4e85a4f3f1b3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B10_755918.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32D-A134-01 525ba903-c7df-4bc3-acf6-4e85a4f3f1b3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B10_755918.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.103.1008.0 103 07-DEC-11 11.41.19.652000000 AM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32D-A134-01 525ba903-c7df-4bc3-acf6-4e85a4f3f1b3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0/GAMMA_p_TCGA_b103_104_SNP_N_GenomeWideSNP_6_B10_755918.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.103.1008.0 103 07-DEC-11 12.59.59.163000000 PM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32D-A135-09 cc8284b1-f404-4283-b41b-006f9402d472 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32D-A138-05 83355831-ea7f-4681-baef-d4c1df519443 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32D-A138-05 83355831-ea7f-4681-baef-d4c1df519443 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324071_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32D-A138-05 83355831-ea7f-4681-baef-d4c1df519443 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0/6042324071_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.8.1.0 103 07-NOV-11 04.36.03.344000000 PM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32D-A138-05 83355831-ea7f-4681-baef-d4c1df519443 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-2.TCGA-E2-A15I-11A-32D-A138-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.8.1.0 103 07-NOV-11 05.19.10.670000000 PM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32D-A138-05 83355831-ea7f-4681-baef-d4c1df519443 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0/jhu-usc.edu_BRCA.HumanMethylation450.8.lvl-3.TCGA-E2-A15I-11A-32D-A138-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.8.1.0 103 07-NOV-11 05.59.32.897000000 PM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32R-A136-13 38eee596-277c-4f08-9dec-aab0a55df0d3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32R-A136-13 38eee596-277c-4f08-9dec-aab0a55df0d3 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15I-11A-32R-A136-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32R-A136-13 38eee596-277c-4f08-9dec-aab0a55df0d3 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15I-11A-32R-A136-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 103 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32R-A137-07 f9df2254-ab08-4ab2-9b86-ed40e6c8a4b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32R-A137-07 f9df2254-ab08-4ab2-9b86-ed40e6c8a4b9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013085_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 103 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32R-A137-07 f9df2254-ab08-4ab2-9b86-ed40e6c8a4b9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013085_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 103 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32R-A137-07 f9df2254-ab08-4ab2-9b86-ed40e6c8a4b9 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013085_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 103 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32R-A137-07 f9df2254-ab08-4ab2-9b86-ed40e6c8a4b9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406776.TCGA-E2-A15I-11A-32R-A137-07.110725_UNC9-SN296_0208_AC0477ABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32R-A137-07 f9df2254-ab08-4ab2-9b86-ed40e6c8a4b9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406874.TCGA-E2-A15I-11A-32R-A137-07.110725_UNC9-SN296_0208_AC0477ABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32R-A137-07 f9df2254-ab08-4ab2-9b86-ed40e6c8a4b9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_406951.TCGA-E2-A15I-11A-32R-A137-07.110725_UNC9-SN296_0208_AC0477ABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 103 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15I TCGA-E2-A15I-11A TCGA-E2-A15I-11A-32W-A14P-09 528bf2ee-a575-42c1-93d5-382a3559f4a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.103.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15I.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.103.14.0 103 12-JAN-12 08.36.08.712000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11D-A12M-02 06d37b10-863d-4ce6-bbf2-4ef68dfd76dd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11D-A12N-01 61104111-09d5-417b-9ca6-d53fb28bafec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11D-A12N-01 61104111-09d5-417b-9ca6-d53fb28bafec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E10_747900.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11D-A12N-01 61104111-09d5-417b-9ca6-d53fb28bafec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E10_747900.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11D-A12N-01 61104111-09d5-417b-9ca6-d53fb28bafec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E10_747900.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11D-A12N-01 61104111-09d5-417b-9ca6-d53fb28bafec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E10_747900.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11D-A12N-01 61104111-09d5-417b-9ca6-d53fb28bafec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E10_747900.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11D-A12N-01 61104111-09d5-417b-9ca6-d53fb28bafec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E10_747900.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11D-A12N-01 61104111-09d5-417b-9ca6-d53fb28bafec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E10_747900.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11D-A12N-01 61104111-09d5-417b-9ca6-d53fb28bafec SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E10_747900.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11D-A12Q-09 e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11D-A12Q-09 e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11D-A12R-05 2aeccd63-05bf-4bf9-964c-185c132f2ac7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11D-A12R-05 2aeccd63-05bf-4bf9-964c-185c132f2ac7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324035_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11D-A12R-05 2aeccd63-05bf-4bf9-964c-185c132f2ac7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324035_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11D-A12R-05 2aeccd63-05bf-4bf9-964c-185c132f2ac7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-E2-A15J-01A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11D-A12R-05 2aeccd63-05bf-4bf9-964c-185c132f2ac7 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-E2-A15J-01A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11R-A12O-13 e397e595-8c17-468f-aa5e-b59b9734d506 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11R-A12O-13 e397e595-8c17-468f-aa5e-b59b9734d506 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15J-01A-11R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11R-A12O-13 e397e595-8c17-468f-aa5e-b59b9734d506 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15J-01A-11R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11R-A12P-07 376c13fa-ba3e-4f2e-a8bc-87fb70541239 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11R-A12P-07 376c13fa-ba3e-4f2e-a8bc-87fb70541239 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012942_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11R-A12P-07 376c13fa-ba3e-4f2e-a8bc-87fb70541239 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012942_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11R-A12P-07 376c13fa-ba3e-4f2e-a8bc-87fb70541239 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012942_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11R-A12P-07 376c13fa-ba3e-4f2e-a8bc-87fb70541239 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_487280.TCGA-E2-A15J-01A-11R-A12P-07.110706_UNC12-SN629_0107_BD0DKWABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11R-A12P-07 376c13fa-ba3e-4f2e-a8bc-87fb70541239 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_487285.TCGA-E2-A15J-01A-11R-A12P-07.110706_UNC12-SN629_0107_BD0DKWABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11R-A12P-07 376c13fa-ba3e-4f2e-a8bc-87fb70541239 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_487293.TCGA-E2-A15J-01A-11R-A12P-07.110706_UNC12-SN629_0107_BD0DKWABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15J TCGA-E2-A15J-01A TCGA-E2-A15J-01A-11W-A14O-09 c5488ed7-e78a-4ad1-915c-b4de224c404f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15J TCGA-E2-A15J-10A TCGA-E2-A15J-10A-01D-A12M-02 c823c3c6-e52b-41c7-860a-131f828a170f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15J TCGA-E2-A15J-10A TCGA-E2-A15J-10A-01D-A12N-01 00fceb8f-c88b-48d7-994c-8a4a9100f8e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C07_747898.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C07_747898.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C07_747898.ismpolish.data.txt'. TCGA-E2-A15J TCGA-E2-A15J-10A TCGA-E2-A15J-10A-01D-A12N-01 00fceb8f-c88b-48d7-994c-8a4a9100f8e4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C07_747898.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C07_747898.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C07_747898.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C07_747898.ismpolish.data.txt'. TCGA-E2-A15J TCGA-E2-A15J-10A TCGA-E2-A15J-10A-01D-A12N-01 00fceb8f-c88b-48d7-994c-8a4a9100f8e4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C07_747898.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C07_747898.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C07_747898.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C07_747898.ismpolish.data.txt'. TCGA-E2-A15J TCGA-E2-A15J-10A TCGA-E2-A15J-10A-01D-A12Q-09 a496949e-c185-40d9-82d2-c09d64d8b77f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15J TCGA-E2-A15J-10A TCGA-E2-A15J-10A-01D-A12Q-09 a496949e-c185-40d9-82d2-c09d64d8b77f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15J TCGA-E2-A15J-10A TCGA-E2-A15J-10A-01W-A14O-09 c0d9300d-9ec2-4128-8d2b-f929353f2c03 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15J.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11D-A12M-02 209203f5-f658-4974-8fc8-1617881f8ced Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11D-A12N-01 b41bd6ce-5113-4a6f-86d8-17c45406b1ac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11D-A12N-01 b41bd6ce-5113-4a6f-86d8-17c45406b1ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C10_748046.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11D-A12N-01 b41bd6ce-5113-4a6f-86d8-17c45406b1ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C10_748046.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11D-A12N-01 b41bd6ce-5113-4a6f-86d8-17c45406b1ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C10_748046.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11D-A12N-01 b41bd6ce-5113-4a6f-86d8-17c45406b1ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C10_748046.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11D-A12N-01 b41bd6ce-5113-4a6f-86d8-17c45406b1ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C10_748046.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11D-A12N-01 b41bd6ce-5113-4a6f-86d8-17c45406b1ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C10_748046.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11D-A12N-01 b41bd6ce-5113-4a6f-86d8-17c45406b1ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C10_748046.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11D-A12N-01 b41bd6ce-5113-4a6f-86d8-17c45406b1ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C10_748046.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11D-A12Q-09 351253e5-486b-44c3-9399-38a7e367a0e0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11D-A12Q-09 351253e5-486b-44c3-9399-38a7e367a0e0 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11D-A12R-05 7d383d97-e728-49ad-a3bb-644e2a62dbde Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11D-A12R-05 7d383d97-e728-49ad-a3bb-644e2a62dbde DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324037_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11D-A12R-05 7d383d97-e728-49ad-a3bb-644e2a62dbde DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324037_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11D-A12R-05 7d383d97-e728-49ad-a3bb-644e2a62dbde DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-E2-A15K-01A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11D-A12R-05 7d383d97-e728-49ad-a3bb-644e2a62dbde DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-E2-A15K-01A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11R-A12O-13 7c59dba5-d946-46ee-815b-391b0460bbbd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11R-A12O-13 7c59dba5-d946-46ee-815b-391b0460bbbd miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15K-01A-11R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11R-A12O-13 7c59dba5-d946-46ee-815b-391b0460bbbd miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15K-01A-11R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11R-A12P-07 141e15ac-1537-4182-9db5-ba2115cd93d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11R-A12P-07 141e15ac-1537-4182-9db5-ba2115cd93d6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012950_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11R-A12P-07 141e15ac-1537-4182-9db5-ba2115cd93d6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012950_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11R-A12P-07 141e15ac-1537-4182-9db5-ba2115cd93d6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012950_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11R-A12P-07 141e15ac-1537-4182-9db5-ba2115cd93d6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_487248.TCGA-E2-A15K-01A-11R-A12P-07.110706_UNC12-SN629_0107_BD0DKWABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11R-A12P-07 141e15ac-1537-4182-9db5-ba2115cd93d6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_487251.TCGA-E2-A15K-01A-11R-A12P-07.110706_UNC12-SN629_0107_BD0DKWABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11R-A12P-07 141e15ac-1537-4182-9db5-ba2115cd93d6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_487271.TCGA-E2-A15K-01A-11R-A12P-07.110706_UNC12-SN629_0107_BD0DKWABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15K TCGA-E2-A15K-01A TCGA-E2-A15K-01A-11W-A14O-09 48e21510-ada4-4dfb-82b3-802f5cb9ba0a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11D-A12M-02 6caffc3d-4261-4b67-b35f-d538bea779a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11D-A12N-01 7513e337-00ae-48cc-8be4-a62fa39602b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11D-A12N-01 7513e337-00ae-48cc-8be4-a62fa39602b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A11_748018.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11D-A12N-01 7513e337-00ae-48cc-8be4-a62fa39602b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A11_748018.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11D-A12N-01 7513e337-00ae-48cc-8be4-a62fa39602b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A11_748018.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11D-A12N-01 7513e337-00ae-48cc-8be4-a62fa39602b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A11_748018.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11D-A12N-01 7513e337-00ae-48cc-8be4-a62fa39602b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A11_748018.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11D-A12N-01 7513e337-00ae-48cc-8be4-a62fa39602b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A11_748018.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11D-A12N-01 7513e337-00ae-48cc-8be4-a62fa39602b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A11_748018.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11D-A12N-01 7513e337-00ae-48cc-8be4-a62fa39602b9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A11_748018.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11D-A12Q-09 f39cc911-36a7-4c06-9e91-4ad86281db3d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11D-A12Q-09 f39cc911-36a7-4c06-9e91-4ad86281db3d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11D-A12R-05 11b55418-5d80-4cf7-8612-5bda51047b1c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11D-A12R-05 11b55418-5d80-4cf7-8612-5bda51047b1c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324070_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11D-A12R-05 11b55418-5d80-4cf7-8612-5bda51047b1c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324070_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11D-A12R-05 11b55418-5d80-4cf7-8612-5bda51047b1c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-E2-A15K-06A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11D-A12R-05 11b55418-5d80-4cf7-8612-5bda51047b1c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-E2-A15K-06A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11R-A12O-13 74fdf2d0-952c-4f40-823c-ad30317fbbb3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11R-A12O-13 74fdf2d0-952c-4f40-823c-ad30317fbbb3 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15K-06A-11R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11R-A12O-13 74fdf2d0-952c-4f40-823c-ad30317fbbb3 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15K-06A-11R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11R-A12P-07 69f0bc59-c026-40e2-a3b6-88fcde091a82 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11R-A12P-07 69f0bc59-c026-40e2-a3b6-88fcde091a82 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012945_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11R-A12P-07 69f0bc59-c026-40e2-a3b6-88fcde091a82 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012945_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11R-A12P-07 69f0bc59-c026-40e2-a3b6-88fcde091a82 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012945_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11R-A12P-07 69f0bc59-c026-40e2-a3b6-88fcde091a82 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_487253.TCGA-E2-A15K-06A-11R-A12P-07.110706_UNC12-SN629_0107_BD0DKWABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11R-A12P-07 69f0bc59-c026-40e2-a3b6-88fcde091a82 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_487264.TCGA-E2-A15K-06A-11R-A12P-07.110706_UNC12-SN629_0107_BD0DKWABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11R-A12P-07 69f0bc59-c026-40e2-a3b6-88fcde091a82 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_487283.TCGA-E2-A15K-06A-11R-A12P-07.110706_UNC12-SN629_0107_BD0DKWABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15K TCGA-E2-A15K-06A TCGA-E2-A15K-06A-11W-A14O-09 64c5a039-642a-40ff-aa2c-614d1c555d12 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15K TCGA-E2-A15K-10A TCGA-E2-A15K-10A-01D-A12M-02 e5ae5905-ae6c-4c8e-a4ae-c93bc288d7b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15K TCGA-E2-A15K-10A TCGA-E2-A15K-10A-01D-A12N-01 fe335233-35f3-4fe3-9103-5d70c647518b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15K TCGA-E2-A15K-10A TCGA-E2-A15K-10A-01D-A12N-01 fe335233-35f3-4fe3-9103-5d70c647518b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A04_747948.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-E2-A15K TCGA-E2-A15K-10A TCGA-E2-A15K-10A-01D-A12N-01 fe335233-35f3-4fe3-9103-5d70c647518b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A04_747948.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15K TCGA-E2-A15K-10A TCGA-E2-A15K-10A-01D-A12N-01 fe335233-35f3-4fe3-9103-5d70c647518b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A04_747948.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15K TCGA-E2-A15K-10A TCGA-E2-A15K-10A-01D-A12N-01 fe335233-35f3-4fe3-9103-5d70c647518b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A04_747948.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15K TCGA-E2-A15K-10A TCGA-E2-A15K-10A-01D-A12N-01 fe335233-35f3-4fe3-9103-5d70c647518b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A04_747948.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15K TCGA-E2-A15K-10A TCGA-E2-A15K-10A-01D-A12N-01 fe335233-35f3-4fe3-9103-5d70c647518b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A04_747948.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15K TCGA-E2-A15K-10A TCGA-E2-A15K-10A-01D-A12N-01 fe335233-35f3-4fe3-9103-5d70c647518b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A04_747948.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15K TCGA-E2-A15K-10A TCGA-E2-A15K-10A-01D-A12N-01 fe335233-35f3-4fe3-9103-5d70c647518b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_A04_747948.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-E2-A15K TCGA-E2-A15K-10A TCGA-E2-A15K-10A-01D-A12Q-09 6c7d0beb-a20c-4cf8-8e52-2028a8620bb5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15K TCGA-E2-A15K-10A TCGA-E2-A15K-10A-01D-A12Q-09 6c7d0beb-a20c-4cf8-8e52-2028a8620bb5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15K TCGA-E2-A15K-10A TCGA-E2-A15K-10A-01W-A14O-09 2f68f9c9-3216-4866-983f-b4151b7085a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15K TCGA-E2-A15K-11A TCGA-E2-A15K-11A-13D-A12M-02 832d7423-b532-43d0-87cb-2b9f396ed4f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15K TCGA-E2-A15K-11A TCGA-E2-A15K-11A-13D-A12N-01 23ec1c8f-3d33-4e04-94df-271a9efe8a63 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15K TCGA-E2-A15K-11A TCGA-E2-A15K-11A-13D-A12N-01 23ec1c8f-3d33-4e04-94df-271a9efe8a63 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D11_747890.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-E2-A15K TCGA-E2-A15K-11A TCGA-E2-A15K-11A-13D-A12N-01 23ec1c8f-3d33-4e04-94df-271a9efe8a63 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D11_747890.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15K TCGA-E2-A15K-11A TCGA-E2-A15K-11A-13D-A12N-01 23ec1c8f-3d33-4e04-94df-271a9efe8a63 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D11_747890.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15K TCGA-E2-A15K-11A TCGA-E2-A15K-11A-13D-A12N-01 23ec1c8f-3d33-4e04-94df-271a9efe8a63 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D11_747890.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15K TCGA-E2-A15K-11A TCGA-E2-A15K-11A-13D-A12N-01 23ec1c8f-3d33-4e04-94df-271a9efe8a63 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D11_747890.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15K TCGA-E2-A15K-11A TCGA-E2-A15K-11A-13D-A12N-01 23ec1c8f-3d33-4e04-94df-271a9efe8a63 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D11_747890.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15K TCGA-E2-A15K-11A TCGA-E2-A15K-11A-13D-A12N-01 23ec1c8f-3d33-4e04-94df-271a9efe8a63 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D11_747890.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A15K TCGA-E2-A15K-11A TCGA-E2-A15K-11A-13D-A12N-01 23ec1c8f-3d33-4e04-94df-271a9efe8a63 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_D11_747890.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-E2-A15K TCGA-E2-A15K-11A TCGA-E2-A15K-11A-13D-A12Q-09 26163687-7ede-43be-aeb7-21ad33133d45 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15K TCGA-E2-A15K-11A TCGA-E2-A15K-11A-13D-A12Q-09 26163687-7ede-43be-aeb7-21ad33133d45 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15K TCGA-E2-A15K-11A TCGA-E2-A15K-11A-13D-A12R-05 1362c1ad-7658-49a2-b553-3ea94e1752cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15K TCGA-E2-A15K-11A TCGA-E2-A15K-11A-13D-A12R-05 1362c1ad-7658-49a2-b553-3ea94e1752cf DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324070_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A15K TCGA-E2-A15K-11A TCGA-E2-A15K-11A-13D-A12R-05 1362c1ad-7658-49a2-b553-3ea94e1752cf DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324070_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A15K TCGA-E2-A15K-11A TCGA-E2-A15K-11A-13D-A12R-05 1362c1ad-7658-49a2-b553-3ea94e1752cf DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-E2-A15K-11A-13D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-E2-A15K TCGA-E2-A15K-11A TCGA-E2-A15K-11A-13D-A12R-05 1362c1ad-7658-49a2-b553-3ea94e1752cf DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-E2-A15K-11A-13D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-E2-A15K TCGA-E2-A15K-11A TCGA-E2-A15K-11A-13R-A12O-13 bec26d26-258e-4ba0-9956-5402096e580b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15K TCGA-E2-A15K-11A TCGA-E2-A15K-11A-13R-A12O-13 bec26d26-258e-4ba0-9956-5402096e580b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15K-11A-13R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15K TCGA-E2-A15K-11A TCGA-E2-A15K-11A-13R-A12O-13 bec26d26-258e-4ba0-9956-5402096e580b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15K-11A-13R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15K TCGA-E2-A15K-11A TCGA-E2-A15K-11A-13R-A12P-07 49a33b4d-4b1e-4b30-b0ba-a7c7d594db41 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15K TCGA-E2-A15K-11A TCGA-E2-A15K-11A-13W-A14O-09 1ac6ee06-5e18-4757-bb55-94b8303af335 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15K.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A15L TCGA-E2-A15L-01A TCGA-E2-A15L-01A-11D-A129-02 ced96c8f-9ccf-4e5c-bc89-6b8984437e5d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15L TCGA-E2-A15L-01A TCGA-E2-A15L-01A-11D-A12A-01 e96765f9-45a3-446f-924a-45202dd4b7db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15L TCGA-E2-A15L-01A TCGA-E2-A15L-01A-11D-A12A-01 e96765f9-45a3-446f-924a-45202dd4b7db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F03_741528.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A15L TCGA-E2-A15L-01A TCGA-E2-A15L-01A-11D-A12A-01 e96765f9-45a3-446f-924a-45202dd4b7db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F03_741528.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15L TCGA-E2-A15L-01A TCGA-E2-A15L-01A-11D-A12A-01 e96765f9-45a3-446f-924a-45202dd4b7db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F03_741528.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15L TCGA-E2-A15L-01A TCGA-E2-A15L-01A-11D-A12A-01 e96765f9-45a3-446f-924a-45202dd4b7db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F03_741528.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15L TCGA-E2-A15L-01A TCGA-E2-A15L-01A-11D-A12A-01 e96765f9-45a3-446f-924a-45202dd4b7db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F03_741528.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15L TCGA-E2-A15L-01A TCGA-E2-A15L-01A-11D-A12A-01 e96765f9-45a3-446f-924a-45202dd4b7db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F03_741528.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15L TCGA-E2-A15L-01A TCGA-E2-A15L-01A-11D-A12A-01 e96765f9-45a3-446f-924a-45202dd4b7db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F03_741528.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15L TCGA-E2-A15L-01A TCGA-E2-A15L-01A-11D-A12A-01 e96765f9-45a3-446f-924a-45202dd4b7db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F03_741528.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A15L TCGA-E2-A15L-01A TCGA-E2-A15L-01A-11D-A12B-09 0e86ae11-0b76-43ac-b0b8-664a59c3aa6a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15L TCGA-E2-A15L-01A TCGA-E2-A15L-01A-11D-A12B-09 0e86ae11-0b76-43ac-b0b8-664a59c3aa6a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15L TCGA-E2-A15L-01A TCGA-E2-A15L-01A-11D-A12E-05 c9c197d0-06bf-4191-9300-5ecb4688fcc5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15L TCGA-E2-A15L-01A TCGA-E2-A15L-01A-11D-A12E-05 c9c197d0-06bf-4191-9300-5ecb4688fcc5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-E2-A15L-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-E2-A15L TCGA-E2-A15L-01A TCGA-E2-A15L-01A-11D-A12E-05 c9c197d0-06bf-4191-9300-5ecb4688fcc5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-E2-A15L-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-E2-A15L TCGA-E2-A15L-01A TCGA-E2-A15L-01A-11D-A12E-05 c9c197d0-06bf-4191-9300-5ecb4688fcc5 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-E2-A15L-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-E2-A15L TCGA-E2-A15L-01A TCGA-E2-A15L-01A-11R-A12C-13 1e51285e-8d5b-456b-8257-a761cf2261d8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15L TCGA-E2-A15L-01A TCGA-E2-A15L-01A-11R-A12D-07 68a4bd03-2b97-4387-926f-c9d25fac8d29 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15L TCGA-E2-A15L-01A TCGA-E2-A15L-01A-11R-A12D-07 68a4bd03-2b97-4387-926f-c9d25fac8d29 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012869_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A15L TCGA-E2-A15L-01A TCGA-E2-A15L-01A-11R-A12D-07 68a4bd03-2b97-4387-926f-c9d25fac8d29 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012869_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A15L TCGA-E2-A15L-01A TCGA-E2-A15L-01A-11R-A12D-07 68a4bd03-2b97-4387-926f-c9d25fac8d29 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012869_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A15L TCGA-E2-A15L-01A TCGA-E2-A15L-01A-11R-A12D-07 68a4bd03-2b97-4387-926f-c9d25fac8d29 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_402106.TCGA-E2-A15L-01A-11R-A12D-07.110729_UNC15-SN850_0101_AD0DW6ABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15L TCGA-E2-A15L-01A TCGA-E2-A15L-01A-11R-A12D-07 68a4bd03-2b97-4387-926f-c9d25fac8d29 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_402113.TCGA-E2-A15L-01A-11R-A12D-07.110729_UNC15-SN850_0101_AD0DW6ABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15L TCGA-E2-A15L-01A TCGA-E2-A15L-01A-11R-A12D-07 68a4bd03-2b97-4387-926f-c9d25fac8d29 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_402159.TCGA-E2-A15L-01A-11R-A12D-07.110729_UNC15-SN850_0101_AD0DW6ABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15L TCGA-E2-A15L-01A TCGA-E2-A15L-01A-11W-A12S-09 4993085e-599c-4e9d-82f9-1830bc9307cc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15L TCGA-E2-A15L-10A TCGA-E2-A15L-10A-01D-A129-02 55ecc331-87db-46b0-adea-5bcf496f3dee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15L TCGA-E2-A15L-10A TCGA-E2-A15L-10A-01D-A12A-01 53edb0ef-8006-404a-b46e-a2ea6ede92cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15L TCGA-E2-A15L-10A TCGA-E2-A15L-10A-01D-A12A-01 53edb0ef-8006-404a-b46e-a2ea6ede92cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F05_741516.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A15L TCGA-E2-A15L-10A TCGA-E2-A15L-10A-01D-A12A-01 53edb0ef-8006-404a-b46e-a2ea6ede92cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F05_741516.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15L TCGA-E2-A15L-10A TCGA-E2-A15L-10A-01D-A12A-01 53edb0ef-8006-404a-b46e-a2ea6ede92cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F05_741516.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15L TCGA-E2-A15L-10A TCGA-E2-A15L-10A-01D-A12A-01 53edb0ef-8006-404a-b46e-a2ea6ede92cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F05_741516.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15L TCGA-E2-A15L-10A TCGA-E2-A15L-10A-01D-A12A-01 53edb0ef-8006-404a-b46e-a2ea6ede92cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F05_741516.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15L TCGA-E2-A15L-10A TCGA-E2-A15L-10A-01D-A12A-01 53edb0ef-8006-404a-b46e-a2ea6ede92cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F05_741516.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15L TCGA-E2-A15L-10A TCGA-E2-A15L-10A-01D-A12A-01 53edb0ef-8006-404a-b46e-a2ea6ede92cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F05_741516.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15L TCGA-E2-A15L-10A TCGA-E2-A15L-10A-01D-A12A-01 53edb0ef-8006-404a-b46e-a2ea6ede92cb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_F05_741516.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A15L TCGA-E2-A15L-10A TCGA-E2-A15L-10A-01D-A12B-09 0744c5e3-f044-4c56-b3c6-f8678f69c55a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15L TCGA-E2-A15L-10A TCGA-E2-A15L-10A-01D-A12B-09 0744c5e3-f044-4c56-b3c6-f8678f69c55a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15L TCGA-E2-A15L-10A TCGA-E2-A15L-10A-01W-A12S-09 1eb2daed-8243-40bf-96e3-901461739e09 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15L TCGA-E2-A15L-11A TCGA-E2-A15L-11A-31D-A129-02 23c9a005-70eb-4a7a-b34d-7e6b3fe3e231 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15L TCGA-E2-A15L-11A TCGA-E2-A15L-11A-31D-A12A-01 10606551-e3b6-4477-b53e-ea30a142a983 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15L TCGA-E2-A15L-11A TCGA-E2-A15L-11A-31D-A12A-01 10606551-e3b6-4477-b53e-ea30a142a983 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A03_741472.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A15L TCGA-E2-A15L-11A TCGA-E2-A15L-11A-31D-A12A-01 10606551-e3b6-4477-b53e-ea30a142a983 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A03_741472.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15L TCGA-E2-A15L-11A TCGA-E2-A15L-11A-31D-A12A-01 10606551-e3b6-4477-b53e-ea30a142a983 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A03_741472.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15L TCGA-E2-A15L-11A TCGA-E2-A15L-11A-31D-A12A-01 10606551-e3b6-4477-b53e-ea30a142a983 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A03_741472.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15L TCGA-E2-A15L-11A TCGA-E2-A15L-11A-31D-A12A-01 10606551-e3b6-4477-b53e-ea30a142a983 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A03_741472.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15L TCGA-E2-A15L-11A TCGA-E2-A15L-11A-31D-A12A-01 10606551-e3b6-4477-b53e-ea30a142a983 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A03_741472.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15L TCGA-E2-A15L-11A TCGA-E2-A15L-11A-31D-A12A-01 10606551-e3b6-4477-b53e-ea30a142a983 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A03_741472.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15L TCGA-E2-A15L-11A TCGA-E2-A15L-11A-31D-A12A-01 10606551-e3b6-4477-b53e-ea30a142a983 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_A03_741472.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A15L TCGA-E2-A15L-11A TCGA-E2-A15L-11A-31D-A12B-09 f7f1f468-a589-4593-82e4-abbf09d26fcc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15L TCGA-E2-A15L-11A TCGA-E2-A15L-11A-31D-A12B-09 f7f1f468-a589-4593-82e4-abbf09d26fcc Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15L TCGA-E2-A15L-11A TCGA-E2-A15L-11A-31D-A12E-05 704c91f6-54c6-4174-bcb5-c93abcec09af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15L TCGA-E2-A15L-11A TCGA-E2-A15L-11A-31D-A12E-05 704c91f6-54c6-4174-bcb5-c93abcec09af DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-E2-A15L-11A-31D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-E2-A15L TCGA-E2-A15L-11A TCGA-E2-A15L-11A-31D-A12E-05 704c91f6-54c6-4174-bcb5-c93abcec09af DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-E2-A15L-11A-31D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-E2-A15L TCGA-E2-A15L-11A TCGA-E2-A15L-11A-31D-A12E-05 704c91f6-54c6-4174-bcb5-c93abcec09af DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-E2-A15L-11A-31D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-E2-A15L TCGA-E2-A15L-11A TCGA-E2-A15L-11A-31W-A12S-09 52c0c47b-56c0-4cb6-8935-f070c0ce3aeb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15L.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11D-A129-02 91974c78-9fd7-41a3-801a-3698c3601db7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11D-A12A-01 597cc060-51ba-447d-b17e-a454e38cf00b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11D-A12A-01 597cc060-51ba-447d-b17e-a454e38cf00b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D01_741430.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11D-A12A-01 597cc060-51ba-447d-b17e-a454e38cf00b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D01_741430.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11D-A12A-01 597cc060-51ba-447d-b17e-a454e38cf00b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D01_741430.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11D-A12A-01 597cc060-51ba-447d-b17e-a454e38cf00b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D01_741430.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11D-A12A-01 597cc060-51ba-447d-b17e-a454e38cf00b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D01_741430.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11D-A12A-01 597cc060-51ba-447d-b17e-a454e38cf00b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D01_741430.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11D-A12A-01 597cc060-51ba-447d-b17e-a454e38cf00b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D01_741430.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11D-A12A-01 597cc060-51ba-447d-b17e-a454e38cf00b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D01_741430.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11D-A12B-09 06b28922-49b5-4633-a07b-c0bd51b2aee5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11D-A12B-09 06b28922-49b5-4633-a07b-c0bd51b2aee5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11D-A12E-05 58cf4768-e1f3-4905-89be-ebd967193c0a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11D-A12E-05 58cf4768-e1f3-4905-89be-ebd967193c0a DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-E2-A15M-01A-11D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11D-A12E-05 58cf4768-e1f3-4905-89be-ebd967193c0a DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-E2-A15M-01A-11D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11D-A12E-05 58cf4768-e1f3-4905-89be-ebd967193c0a DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-E2-A15M-01A-11D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11R-A12C-13 4260e79f-64d6-4a45-9c88-1bddf1716234 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11R-A12C-13 4260e79f-64d6-4a45-9c88-1bddf1716234 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15M-01A-11R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11R-A12C-13 4260e79f-64d6-4a45-9c88-1bddf1716234 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15M-01A-11R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11R-A12D-07 e596b149-e807-4d29-b0fa-685f07efb9d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11R-A12D-07 e596b149-e807-4d29-b0fa-685f07efb9d6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012877_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11R-A12D-07 e596b149-e807-4d29-b0fa-685f07efb9d6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012877_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11R-A12D-07 e596b149-e807-4d29-b0fa-685f07efb9d6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012877_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11R-A12D-07 e596b149-e807-4d29-b0fa-685f07efb9d6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_402065.TCGA-E2-A15M-01A-11R-A12D-07.110729_UNC15-SN850_0101_AD0DW6ABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11R-A12D-07 e596b149-e807-4d29-b0fa-685f07efb9d6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_402201.TCGA-E2-A15M-01A-11R-A12D-07.110729_UNC15-SN850_0101_AD0DW6ABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11R-A12D-07 e596b149-e807-4d29-b0fa-685f07efb9d6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_402259.TCGA-E2-A15M-01A-11R-A12D-07.110729_UNC15-SN850_0101_AD0DW6ABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15M TCGA-E2-A15M-01A TCGA-E2-A15M-01A-11W-A12S-09 99daa55c-1dbc-49b2-b095-4123747810a5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15M TCGA-E2-A15M-10A TCGA-E2-A15M-10A-01D-A129-02 e1226946-317c-4069-8a84-51d30bc46b37 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15M TCGA-E2-A15M-10A TCGA-E2-A15M-10A-01D-A12A-01 f48ae533-7435-48ff-a7ee-5d7728d84ba7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15M TCGA-E2-A15M-10A TCGA-E2-A15M-10A-01D-A12A-01 f48ae533-7435-48ff-a7ee-5d7728d84ba7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D02_741476.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A15M TCGA-E2-A15M-10A TCGA-E2-A15M-10A-01D-A12A-01 f48ae533-7435-48ff-a7ee-5d7728d84ba7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D02_741476.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15M TCGA-E2-A15M-10A TCGA-E2-A15M-10A-01D-A12A-01 f48ae533-7435-48ff-a7ee-5d7728d84ba7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D02_741476.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15M TCGA-E2-A15M-10A TCGA-E2-A15M-10A-01D-A12A-01 f48ae533-7435-48ff-a7ee-5d7728d84ba7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D02_741476.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15M TCGA-E2-A15M-10A TCGA-E2-A15M-10A-01D-A12A-01 f48ae533-7435-48ff-a7ee-5d7728d84ba7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D02_741476.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15M TCGA-E2-A15M-10A TCGA-E2-A15M-10A-01D-A12A-01 f48ae533-7435-48ff-a7ee-5d7728d84ba7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D02_741476.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15M TCGA-E2-A15M-10A TCGA-E2-A15M-10A-01D-A12A-01 f48ae533-7435-48ff-a7ee-5d7728d84ba7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D02_741476.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15M TCGA-E2-A15M-10A TCGA-E2-A15M-10A-01D-A12A-01 f48ae533-7435-48ff-a7ee-5d7728d84ba7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_D02_741476.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A15M TCGA-E2-A15M-10A TCGA-E2-A15M-10A-01D-A12B-09 e71af20f-596d-4bad-8af3-4ded35614825 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15M TCGA-E2-A15M-10A TCGA-E2-A15M-10A-01D-A12B-09 e71af20f-596d-4bad-8af3-4ded35614825 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15M TCGA-E2-A15M-10A TCGA-E2-A15M-10A-01W-A12S-09 bc695a16-3189-4a8e-8a86-ed13b56a2f20 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22D-A129-02 2e664fb3-4f1e-43cc-9009-9b3f709c164e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22D-A12A-01 b29cffe7-2824-45ee-be53-f6008472bcf6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22D-A12A-01 b29cffe7-2824-45ee-be53-f6008472bcf6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C08_741540.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.93.1008.0 93 07-DEC-11 11.36.38.457000000 AM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22D-A12A-01 b29cffe7-2824-45ee-be53-f6008472bcf6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C08_741540.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22D-A12A-01 b29cffe7-2824-45ee-be53-f6008472bcf6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C08_741540.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22D-A12A-01 b29cffe7-2824-45ee-be53-f6008472bcf6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C08_741540.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22D-A12A-01 b29cffe7-2824-45ee-be53-f6008472bcf6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C08_741540.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22D-A12A-01 b29cffe7-2824-45ee-be53-f6008472bcf6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C08_741540.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22D-A12A-01 b29cffe7-2824-45ee-be53-f6008472bcf6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C08_741540.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.93.1008.0 93 07-DEC-11 12.54.33.962000000 PM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22D-A12A-01 b29cffe7-2824-45ee-be53-f6008472bcf6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0/HITCH_p_TCGASNP_b93_N_GenomeWideSNP_6_C08_741540.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.93.1008.0 93 07-DEC-11 01.00.14.691000000 PM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22D-A12B-09 635d491b-44f7-4467-adb0-941c2bd5d1f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22D-A12B-09 635d491b-44f7-4467-adb0-941c2bd5d1f9 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 93 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22D-A12E-05 2a5e5a59-95fa-4570-994e-ae27827f6bc7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22D-A12E-05 2a5e5a59-95fa-4570-994e-ae27827f6bc7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-1.TCGA-E2-A15M-11A-22D-A12E-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.4.0.0 93 22-AUG-11 01.45.49.357000000 PM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22D-A12E-05 2a5e5a59-95fa-4570-994e-ae27827f6bc7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-2.TCGA-E2-A15M-11A-22D-A12E-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.4.0.0 93 22-AUG-11 01.47.48.599000000 PM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22D-A12E-05 2a5e5a59-95fa-4570-994e-ae27827f6bc7 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0/jhu-usc.edu_BRCA.HumanMethylation27.4.lvl-3.TCGA-E2-A15M-11A-22D-A12E-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.4.0.0 93 22-AUG-11 01.49.48.773000000 PM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22R-A12C-13 e52c4ddf-5e36-4abd-bd84-52b51f33594a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22R-A12C-13 e52c4ddf-5e36-4abd-bd84-52b51f33594a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15M-11A-22R-A12C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22R-A12C-13 e52c4ddf-5e36-4abd-bd84-52b51f33594a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15M-11A-22R-A12C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 93 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22R-A12D-07 f75e5efb-056f-40bf-afed-33d971478ca4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22R-A12D-07 f75e5efb-056f-40bf-afed-33d971478ca4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012896_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 93 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22R-A12D-07 f75e5efb-056f-40bf-afed-33d971478ca4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012896_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 93 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22R-A12D-07 f75e5efb-056f-40bf-afed-33d971478ca4 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012896_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 93 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22R-A12D-07 f75e5efb-056f-40bf-afed-33d971478ca4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_449747.TCGA-E2-A15M-11A-22R-A12D-07.110718_UNC12-SN629_0110_AB0AR8ABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22R-A12D-07 f75e5efb-056f-40bf-afed-33d971478ca4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_449751.TCGA-E2-A15M-11A-22R-A12D-07.110718_UNC12-SN629_0110_AB0AR8ABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22R-A12D-07 f75e5efb-056f-40bf-afed-33d971478ca4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_449779.TCGA-E2-A15M-11A-22R-A12D-07.110718_UNC12-SN629_0110_AB0AR8ABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 93 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15M TCGA-E2-A15M-11A TCGA-E2-A15M-11A-22W-A12S-09 6be0f993-8a32-45cf-a434-a0a2ff1c300b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.93.18.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15M.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.93.18.0 93 31-JAN-12 05.16.00.079000000 PM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11D-A10X-02 9712631f-82db-4dbd-9cfb-1dbdfa3a582c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11D-A10Y-09 39c1df91-b670-4f6b-b5ff-dbb6b66d30af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11D-A10Y-09 39c1df91-b670-4f6b-b5ff-dbb6b66d30af Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11D-A111-01 61a71ac8-5aad-4b2d-b931-57d347210540 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11D-A111-01 61a71ac8-5aad-4b2d-b931-57d347210540 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G12_735232.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11D-A111-01 61a71ac8-5aad-4b2d-b931-57d347210540 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G12_735232.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11D-A111-01 61a71ac8-5aad-4b2d-b931-57d347210540 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G12_735232.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11D-A111-01 61a71ac8-5aad-4b2d-b931-57d347210540 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G12_735232.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11D-A111-01 61a71ac8-5aad-4b2d-b931-57d347210540 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G12_735232.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11D-A111-01 61a71ac8-5aad-4b2d-b931-57d347210540 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G12_735232.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11D-A111-01 61a71ac8-5aad-4b2d-b931-57d347210540 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G12_735232.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11D-A111-01 61a71ac8-5aad-4b2d-b931-57d347210540 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G12_735232.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11D-A112-05 794b3b00-f355-438d-a6f3-6d78f39b7702 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11D-A112-05 794b3b00-f355-438d-a6f3-6d78f39b7702 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-E2-A15O-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11D-A112-05 794b3b00-f355-438d-a6f3-6d78f39b7702 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-E2-A15O-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11D-A112-05 794b3b00-f355-438d-a6f3-6d78f39b7702 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-E2-A15O-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11R-A114-13 f70e891b-128e-4e73-b948-20d025f99d1c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11R-A114-13 f70e891b-128e-4e73-b948-20d025f99d1c miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15O-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11R-A114-13 f70e891b-128e-4e73-b948-20d025f99d1c miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15O-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11R-A115-07 4a28ecf3-c70e-42d0-918b-866d11804c13 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11R-A115-07 4a28ecf3-c70e-42d0-918b-866d11804c13 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012756_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11R-A115-07 4a28ecf3-c70e-42d0-918b-866d11804c13 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012756_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11R-A115-07 4a28ecf3-c70e-42d0-918b-866d11804c13 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012756_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11R-A115-07 4a28ecf3-c70e-42d0-918b-866d11804c13 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_419374.TCGA-E2-A15O-01A-11R-A115-07.110608_UNC11-SN627_0103_BD0CVVABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11R-A115-07 4a28ecf3-c70e-42d0-918b-866d11804c13 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_419387.TCGA-E2-A15O-01A-11R-A115-07.110608_UNC11-SN627_0103_BD0CVVABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11R-A115-07 4a28ecf3-c70e-42d0-918b-866d11804c13 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_419556.TCGA-E2-A15O-01A-11R-A115-07.110608_UNC11-SN627_0103_BD0CVVABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15O TCGA-E2-A15O-01A TCGA-E2-A15O-01A-11W-A12T-09 66124c75-d248-41be-b019-4a3847b47940 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15O TCGA-E2-A15O-10A TCGA-E2-A15O-10A-01D-A10Z-02 815d0edc-e803-4a09-a7e3-a78dd986dad2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15O TCGA-E2-A15O-10A TCGA-E2-A15O-10A-01D-A110-09 6fb74fc6-17aa-4a5c-ba62-17a1609eef50 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15O TCGA-E2-A15O-10A TCGA-E2-A15O-10A-01D-A110-09 6fb74fc6-17aa-4a5c-ba62-17a1609eef50 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15O TCGA-E2-A15O-10A TCGA-E2-A15O-10A-01D-A113-01 cd96b64c-2b22-4edb-9f91-d42f80e77c82 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15O TCGA-E2-A15O-10A TCGA-E2-A15O-10A-01D-A113-01 cd96b64c-2b22-4edb-9f91-d42f80e77c82 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G09_735298.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-E2-A15O TCGA-E2-A15O-10A TCGA-E2-A15O-10A-01D-A113-01 cd96b64c-2b22-4edb-9f91-d42f80e77c82 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G09_735298.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15O TCGA-E2-A15O-10A TCGA-E2-A15O-10A-01D-A113-01 cd96b64c-2b22-4edb-9f91-d42f80e77c82 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G09_735298.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15O TCGA-E2-A15O-10A TCGA-E2-A15O-10A-01D-A113-01 cd96b64c-2b22-4edb-9f91-d42f80e77c82 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G09_735298.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15O TCGA-E2-A15O-10A TCGA-E2-A15O-10A-01D-A113-01 cd96b64c-2b22-4edb-9f91-d42f80e77c82 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G09_735298.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15O TCGA-E2-A15O-10A TCGA-E2-A15O-10A-01D-A113-01 cd96b64c-2b22-4edb-9f91-d42f80e77c82 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G09_735298.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15O TCGA-E2-A15O-10A TCGA-E2-A15O-10A-01D-A113-01 cd96b64c-2b22-4edb-9f91-d42f80e77c82 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G09_735298.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15O TCGA-E2-A15O-10A TCGA-E2-A15O-10A-01D-A113-01 cd96b64c-2b22-4edb-9f91-d42f80e77c82 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_G09_735298.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-E2-A15O TCGA-E2-A15O-10A TCGA-E2-A15O-10A-01W-A12U-09 6f1fc8fa-0015-4a14-8572-29c05ce44afe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15O.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11D-A10X-02 c8324988-1b02-418d-9cdf-c00557be5b5d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11D-A10Y-09 5f1853c2-6579-42d0-adc2-636b5de543e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11D-A10Y-09 5f1853c2-6579-42d0-adc2-636b5de543e4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11D-A111-01 2bdfaad7-f202-4d89-a8f6-a55789594e2a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11D-A111-01 2bdfaad7-f202-4d89-a8f6-a55789594e2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B01_735350.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11D-A111-01 2bdfaad7-f202-4d89-a8f6-a55789594e2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B01_735350.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11D-A111-01 2bdfaad7-f202-4d89-a8f6-a55789594e2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B01_735350.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11D-A111-01 2bdfaad7-f202-4d89-a8f6-a55789594e2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B01_735350.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11D-A111-01 2bdfaad7-f202-4d89-a8f6-a55789594e2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B01_735350.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11D-A111-01 2bdfaad7-f202-4d89-a8f6-a55789594e2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B01_735350.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11D-A111-01 2bdfaad7-f202-4d89-a8f6-a55789594e2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B01_735350.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11D-A111-01 2bdfaad7-f202-4d89-a8f6-a55789594e2a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_B01_735350.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11D-A112-05 e99f887e-6911-41ba-8c4c-ef73a3e2eccc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11D-A112-05 e99f887e-6911-41ba-8c4c-ef73a3e2eccc DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-E2-A15P-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11D-A112-05 e99f887e-6911-41ba-8c4c-ef73a3e2eccc DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-E2-A15P-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11D-A112-05 e99f887e-6911-41ba-8c4c-ef73a3e2eccc DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-E2-A15P-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11R-A114-13 37bf12b8-9fa6-4270-b9a9-5d0b21fdba1d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11R-A114-13 37bf12b8-9fa6-4270-b9a9-5d0b21fdba1d miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15P-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11R-A114-13 37bf12b8-9fa6-4270-b9a9-5d0b21fdba1d miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15P-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11R-A115-07 61c279ee-777a-4c05-bc38-e1a9183faaff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11R-A115-07 61c279ee-777a-4c05-bc38-e1a9183faaff Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012768_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11R-A115-07 61c279ee-777a-4c05-bc38-e1a9183faaff Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012768_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11R-A115-07 61c279ee-777a-4c05-bc38-e1a9183faaff Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012768_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11R-A115-07 61c279ee-777a-4c05-bc38-e1a9183faaff RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420973.TCGA-E2-A15P-01A-11R-A115-07.110606_UNC12-SN629_0091_BC03JHABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11R-A115-07 61c279ee-777a-4c05-bc38-e1a9183faaff RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420975.TCGA-E2-A15P-01A-11R-A115-07.110606_UNC12-SN629_0091_BC03JHABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11R-A115-07 61c279ee-777a-4c05-bc38-e1a9183faaff RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_421061.TCGA-E2-A15P-01A-11R-A115-07.110606_UNC12-SN629_0091_BC03JHABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15P TCGA-E2-A15P-01A TCGA-E2-A15P-01A-11W-A12T-09 c0f1f300-9393-4aba-a5fe-1b390373b332 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15P TCGA-E2-A15P-10A TCGA-E2-A15P-10A-01D-A10Z-02 30447c43-7792-41cd-8cf0-db026263c028 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15P TCGA-E2-A15P-10A TCGA-E2-A15P-10A-01D-A110-09 07d07a8a-5565-4f85-9de7-dd082bc2802a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15P TCGA-E2-A15P-10A TCGA-E2-A15P-10A-01D-A110-09 07d07a8a-5565-4f85-9de7-dd082bc2802a Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15P TCGA-E2-A15P-10A TCGA-E2-A15P-10A-01D-A113-01 b215e500-9e5d-499c-93a2-4b929cb69546 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15P TCGA-E2-A15P-10A TCGA-E2-A15P-10A-01W-A12U-09 3ac6f9ae-b403-4964-9d2c-eccf14d6283a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15P.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11D-A10X-02 a60c8f8a-75cf-4467-a87b-10b10740589a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11D-A10Y-09 11799240-0275-48fe-84ef-85e188839bbe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11D-A10Y-09 11799240-0275-48fe-84ef-85e188839bbe Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11D-A111-01 37d17072-0bcc-41ed-a80e-87a27ea956d4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11D-A111-01 37d17072-0bcc-41ed-a80e-87a27ea956d4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E03_735222.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11D-A111-01 37d17072-0bcc-41ed-a80e-87a27ea956d4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E03_735222.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11D-A111-01 37d17072-0bcc-41ed-a80e-87a27ea956d4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E03_735222.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11D-A111-01 37d17072-0bcc-41ed-a80e-87a27ea956d4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E03_735222.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11D-A111-01 37d17072-0bcc-41ed-a80e-87a27ea956d4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E03_735222.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11D-A111-01 37d17072-0bcc-41ed-a80e-87a27ea956d4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E03_735222.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11D-A111-01 37d17072-0bcc-41ed-a80e-87a27ea956d4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E03_735222.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11D-A111-01 37d17072-0bcc-41ed-a80e-87a27ea956d4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_E03_735222.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11D-A112-05 2d320677-ad46-44d2-8915-d4e28c904836 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11D-A112-05 2d320677-ad46-44d2-8915-d4e28c904836 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-E2-A15R-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11D-A112-05 2d320677-ad46-44d2-8915-d4e28c904836 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-E2-A15R-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11D-A112-05 2d320677-ad46-44d2-8915-d4e28c904836 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-E2-A15R-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11R-A114-13 ed0dea6b-b43c-4bf4-ae8d-8f7532dae8c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11R-A114-13 ed0dea6b-b43c-4bf4-ae8d-8f7532dae8c8 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15R-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11R-A114-13 ed0dea6b-b43c-4bf4-ae8d-8f7532dae8c8 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15R-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11R-A115-07 8f90121d-5f9a-4702-a2ae-2a9b34a99171 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11R-A115-07 8f90121d-5f9a-4702-a2ae-2a9b34a99171 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012781_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11R-A115-07 8f90121d-5f9a-4702-a2ae-2a9b34a99171 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012781_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11R-A115-07 8f90121d-5f9a-4702-a2ae-2a9b34a99171 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012781_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11R-A115-07 8f90121d-5f9a-4702-a2ae-2a9b34a99171 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420930.TCGA-E2-A15R-01A-11R-A115-07.110606_UNC12-SN629_0091_BC03JHABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11R-A115-07 8f90121d-5f9a-4702-a2ae-2a9b34a99171 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420932.TCGA-E2-A15R-01A-11R-A115-07.110606_UNC12-SN629_0091_BC03JHABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11R-A115-07 8f90121d-5f9a-4702-a2ae-2a9b34a99171 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420961.TCGA-E2-A15R-01A-11R-A115-07.110606_UNC12-SN629_0091_BC03JHABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15R TCGA-E2-A15R-01A TCGA-E2-A15R-01A-11W-A12T-09 910bb46f-671d-45ec-84db-3646f4272fae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15R TCGA-E2-A15R-10A TCGA-E2-A15R-10A-01D-A10Z-02 30d76033-944e-46ec-beb0-2b68db47eab9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15R TCGA-E2-A15R-10A TCGA-E2-A15R-10A-01D-A110-09 463d72c3-0e93-4d3e-b1c8-39827372fa08 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15R TCGA-E2-A15R-10A TCGA-E2-A15R-10A-01D-A110-09 463d72c3-0e93-4d3e-b1c8-39827372fa08 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15R TCGA-E2-A15R-10A TCGA-E2-A15R-10A-01D-A113-01 1d22c62d-afa8-4d8f-b012-b9ae903a8008 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15R TCGA-E2-A15R-10A TCGA-E2-A15R-10A-01D-A113-01 1d22c62d-afa8-4d8f-b012-b9ae903a8008 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A10_735374.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-E2-A15R TCGA-E2-A15R-10A TCGA-E2-A15R-10A-01D-A113-01 1d22c62d-afa8-4d8f-b012-b9ae903a8008 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A10_735374.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15R TCGA-E2-A15R-10A TCGA-E2-A15R-10A-01D-A113-01 1d22c62d-afa8-4d8f-b012-b9ae903a8008 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A10_735374.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15R TCGA-E2-A15R-10A TCGA-E2-A15R-10A-01D-A113-01 1d22c62d-afa8-4d8f-b012-b9ae903a8008 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A10_735374.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15R TCGA-E2-A15R-10A TCGA-E2-A15R-10A-01D-A113-01 1d22c62d-afa8-4d8f-b012-b9ae903a8008 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A10_735374.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15R TCGA-E2-A15R-10A TCGA-E2-A15R-10A-01D-A113-01 1d22c62d-afa8-4d8f-b012-b9ae903a8008 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A10_735374.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15R TCGA-E2-A15R-10A TCGA-E2-A15R-10A-01D-A113-01 1d22c62d-afa8-4d8f-b012-b9ae903a8008 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A10_735374.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15R TCGA-E2-A15R-10A TCGA-E2-A15R-10A-01D-A113-01 1d22c62d-afa8-4d8f-b012-b9ae903a8008 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_A10_735374.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-E2-A15R TCGA-E2-A15R-10A TCGA-E2-A15R-10A-01W-A12U-09 fa32555b-91d5-4da5-8d78-5bbf6a140f78 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15R.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15S TCGA-E2-A15S-01A TCGA-E2-A15S-01A-11D-A10X-02 554cb00e-ce68-41b6-89f4-e4d56ad8839b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15S TCGA-E2-A15S-01A TCGA-E2-A15S-01A-11D-A10Y-09 01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15S TCGA-E2-A15S-01A TCGA-E2-A15S-01A-11D-A10Y-09 01f78efa-ba0b-4263-81fd-d3d8ea1bc5fd Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15S TCGA-E2-A15S-01A TCGA-E2-A15S-01A-11D-A111-01 888a41e1-bc82-44a2-b2c1-05b7590ab22a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15S TCGA-E2-A15S-01A TCGA-E2-A15S-01A-11D-A112-05 f1d05c75-7fa9-4c9b-93ae-12e772457639 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15S TCGA-E2-A15S-01A TCGA-E2-A15S-01A-11D-A112-05 f1d05c75-7fa9-4c9b-93ae-12e772457639 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-E2-A15S-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-E2-A15S TCGA-E2-A15S-01A TCGA-E2-A15S-01A-11D-A112-05 f1d05c75-7fa9-4c9b-93ae-12e772457639 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-E2-A15S-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-E2-A15S TCGA-E2-A15S-01A TCGA-E2-A15S-01A-11D-A112-05 f1d05c75-7fa9-4c9b-93ae-12e772457639 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-E2-A15S-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-E2-A15S TCGA-E2-A15S-01A TCGA-E2-A15S-01A-11R-A114-13 d97d5714-8b59-4b84-aaec-a515c2d35283 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15S TCGA-E2-A15S-01A TCGA-E2-A15S-01A-11R-A114-13 d97d5714-8b59-4b84-aaec-a515c2d35283 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15S-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15S TCGA-E2-A15S-01A TCGA-E2-A15S-01A-11R-A114-13 d97d5714-8b59-4b84-aaec-a515c2d35283 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15S-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15S TCGA-E2-A15S-01A TCGA-E2-A15S-01A-11R-A115-07 754fd66b-f39a-4308-a57c-05de251f9014 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15S TCGA-E2-A15S-01A TCGA-E2-A15S-01A-11R-A115-07 754fd66b-f39a-4308-a57c-05de251f9014 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012794_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-E2-A15S TCGA-E2-A15S-01A TCGA-E2-A15S-01A-11R-A115-07 754fd66b-f39a-4308-a57c-05de251f9014 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012794_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-E2-A15S TCGA-E2-A15S-01A TCGA-E2-A15S-01A-11R-A115-07 754fd66b-f39a-4308-a57c-05de251f9014 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012794_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-E2-A15S TCGA-E2-A15S-01A TCGA-E2-A15S-01A-11R-A115-07 754fd66b-f39a-4308-a57c-05de251f9014 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420626.TCGA-E2-A15S-01A-11R-A115-07.110608_SN254_0231_BD0CT2ABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15S TCGA-E2-A15S-01A TCGA-E2-A15S-01A-11R-A115-07 754fd66b-f39a-4308-a57c-05de251f9014 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420628.TCGA-E2-A15S-01A-11R-A115-07.110608_SN254_0231_BD0CT2ABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15S TCGA-E2-A15S-01A TCGA-E2-A15S-01A-11R-A115-07 754fd66b-f39a-4308-a57c-05de251f9014 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_420747.TCGA-E2-A15S-01A-11R-A115-07.110608_SN254_0231_BD0CT2ABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 85 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A15S TCGA-E2-A15S-01A TCGA-E2-A15S-01A-11W-A12T-09 e0759c98-0d44-44f8-9ccb-73703c02403f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15S TCGA-E2-A15S-10A TCGA-E2-A15S-10A-01D-A10Z-02 b208fbff-3c93-4d6d-b696-a32a10367add Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15S TCGA-E2-A15S-10A TCGA-E2-A15S-10A-01D-A110-09 9c963e55-136d-498c-b440-09d4fc3f74de Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15S TCGA-E2-A15S-10A TCGA-E2-A15S-10A-01D-A110-09 9c963e55-136d-498c-b440-09d4fc3f74de Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15S TCGA-E2-A15S-10A TCGA-E2-A15S-10A-01D-A113-01 282f3ac6-3908-475d-8314-6f9f0a09838a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15S TCGA-E2-A15S-10A TCGA-E2-A15S-10A-01D-A113-01 282f3ac6-3908-475d-8314-6f9f0a09838a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C06_735292.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.85.1008.0 85 07-DEC-11 11.38.10.331000000 AM TCGA-E2-A15S TCGA-E2-A15S-10A TCGA-E2-A15S-10A-01D-A113-01 282f3ac6-3908-475d-8314-6f9f0a09838a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C06_735292.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15S TCGA-E2-A15S-10A TCGA-E2-A15S-10A-01D-A113-01 282f3ac6-3908-475d-8314-6f9f0a09838a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C06_735292.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15S TCGA-E2-A15S-10A TCGA-E2-A15S-10A-01D-A113-01 282f3ac6-3908-475d-8314-6f9f0a09838a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C06_735292.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15S TCGA-E2-A15S-10A TCGA-E2-A15S-10A-01D-A113-01 282f3ac6-3908-475d-8314-6f9f0a09838a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C06_735292.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15S TCGA-E2-A15S-10A TCGA-E2-A15S-10A-01D-A113-01 282f3ac6-3908-475d-8314-6f9f0a09838a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C06_735292.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15S TCGA-E2-A15S-10A TCGA-E2-A15S-10A-01D-A113-01 282f3ac6-3908-475d-8314-6f9f0a09838a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C06_735292.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.85.1008.0 85 07-DEC-11 12.59.58.537000000 PM TCGA-E2-A15S TCGA-E2-A15S-10A TCGA-E2-A15S-10A-01D-A113-01 282f3ac6-3908-475d-8314-6f9f0a09838a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0/GHOUL_p_TCGASNP_b85and51R_N_GenomeWideSNP_6_C06_735292.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.85.1008.0 85 07-DEC-11 01.00.14.065000000 PM TCGA-E2-A15S TCGA-E2-A15S-10A TCGA-E2-A15S-10A-01W-A12U-09 fe90bb16-6df2-440e-8af8-ffeb34468e65 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15S.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15T TCGA-E2-A15T-01A TCGA-E2-A15T-01A-11D-A10X-02 de51fb38-f6f6-457d-9ae4-aa5ee97d6a52 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15T TCGA-E2-A15T-01A TCGA-E2-A15T-01A-11D-A10Y-09 eff74709-36af-4da4-91c1-01100ddc7735 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15T TCGA-E2-A15T-01A TCGA-E2-A15T-01A-11D-A10Y-09 eff74709-36af-4da4-91c1-01100ddc7735 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15T TCGA-E2-A15T-01A TCGA-E2-A15T-01A-11D-A111-01 93d6d838-9563-4daa-ab69-5ba0073c9d1d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15T TCGA-E2-A15T-01A TCGA-E2-A15T-01A-11D-A112-05 185a9b8b-40e5-41cc-b839-cc5fb972cce8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15T TCGA-E2-A15T-01A TCGA-E2-A15T-01A-11D-A112-05 185a9b8b-40e5-41cc-b839-cc5fb972cce8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-1.TCGA-E2-A15T-01A-11D-A112-05.txt 1 jhu-usc.edu_BRCA.HumanMethylation27.Level_1.3.0.0 85 22-AUG-11 01.44.51.127000000 PM TCGA-E2-A15T TCGA-E2-A15T-01A TCGA-E2-A15T-01A-11D-A112-05 185a9b8b-40e5-41cc-b839-cc5fb972cce8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-2.TCGA-E2-A15T-01A-11D-A112-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation27.Level_2.3.0.0 85 22-AUG-11 01.46.49.597000000 PM TCGA-E2-A15T TCGA-E2-A15T-01A TCGA-E2-A15T-01A-11D-A112-05 185a9b8b-40e5-41cc-b839-cc5fb972cce8 DNA Methylation HumanMethylation27 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation27/methylation/jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0/jhu-usc.edu_BRCA.HumanMethylation27.3.lvl-3.TCGA-E2-A15T-01A-11D-A112-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation27.Level_3.3.0.0 85 22-AUG-11 01.48.49.253000000 PM TCGA-E2-A15T TCGA-E2-A15T-01A TCGA-E2-A15T-01A-11R-A114-13 e28134e2-6158-4449-a3d8-e997b8995ff9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15T TCGA-E2-A15T-01A TCGA-E2-A15T-01A-11R-A114-13 e28134e2-6158-4449-a3d8-e997b8995ff9 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15T-01A-11R-A114-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15T TCGA-E2-A15T-01A TCGA-E2-A15T-01A-11R-A114-13 e28134e2-6158-4449-a3d8-e997b8995ff9 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A15T-01A-11R-A114-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 85 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A15T TCGA-E2-A15T-01A TCGA-E2-A15T-01A-11R-A115-07 5db1c37a-2329-4bd3-baf2-89d26a8959fa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15T TCGA-E2-A15T-01A TCGA-E2-A15T-01A-11R-A115-07 5db1c37a-2329-4bd3-baf2-89d26a8959fa Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0/US82800149_251976012806_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.7.0.0 85 15-MAR-11 10.19.42.509000000 AM TCGA-E2-A15T TCGA-E2-A15T-01A TCGA-E2-A15T-01A-11R-A115-07 5db1c37a-2329-4bd3-baf2-89d26a8959fa Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0/US82800149_251976012806_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.7.0.0 85 15-MAR-11 10.12.14.104000000 AM TCGA-E2-A15T TCGA-E2-A15T-01A TCGA-E2-A15T-01A-11R-A115-07 5db1c37a-2329-4bd3-baf2-89d26a8959fa Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0/US82800149_251976012806_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.7.0.0 85 15-MAR-11 10.12.58.325000000 AM TCGA-E2-A15T TCGA-E2-A15T-01A TCGA-E2-A15T-01A-11W-A12T-09 e63f4601-858f-49c1-8483-fe589c36609c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15T TCGA-E2-A15T-10A TCGA-E2-A15T-10A-01D-A10Z-02 769f1815-6939-434e-a68e-75c1d52df77c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15T TCGA-E2-A15T-10A TCGA-E2-A15T-10A-01D-A110-09 ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15T TCGA-E2-A15T-10A TCGA-E2-A15T-10A-01D-A110-09 ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 85 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A15T TCGA-E2-A15T-10A TCGA-E2-A15T-10A-01D-A113-01 3354cbc7-10e7-4615-a843-8761b6dabe2f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A15T TCGA-E2-A15T-10A TCGA-E2-A15T-10A-01W-A12U-09 5fb32653-29f8-4293-9ddc-2094d568e158 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.85.19.0/nationwidechildrens.org_biospecimen.TCGA-E2-A15T.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.85.19.0 85 12-JAN-12 08.51.09.476000000 PM TCGA-E2-A1AZ TCGA-E2-A1AZ-01A TCGA-E2-A1AZ-01A-11D-A12M-02 782a11ce-c75d-4ff6-a562-1150072f14bd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1AZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1AZ TCGA-E2-A1AZ-01A TCGA-E2-A1AZ-01A-11D-A12N-01 9ca918d1-dde6-4812-b6b8-05a6fb2332c3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1AZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1AZ TCGA-E2-A1AZ-01A TCGA-E2-A1AZ-01A-11D-A12N-01 9ca918d1-dde6-4812-b6b8-05a6fb2332c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F05_748010.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-E2-A1AZ TCGA-E2-A1AZ-01A TCGA-E2-A1AZ-01A-11D-A12N-01 9ca918d1-dde6-4812-b6b8-05a6fb2332c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F05_748010.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1AZ TCGA-E2-A1AZ-01A TCGA-E2-A1AZ-01A-11D-A12N-01 9ca918d1-dde6-4812-b6b8-05a6fb2332c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F05_748010.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1AZ TCGA-E2-A1AZ-01A TCGA-E2-A1AZ-01A-11D-A12N-01 9ca918d1-dde6-4812-b6b8-05a6fb2332c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F05_748010.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1AZ TCGA-E2-A1AZ-01A TCGA-E2-A1AZ-01A-11D-A12N-01 9ca918d1-dde6-4812-b6b8-05a6fb2332c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F05_748010.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1AZ TCGA-E2-A1AZ-01A TCGA-E2-A1AZ-01A-11D-A12N-01 9ca918d1-dde6-4812-b6b8-05a6fb2332c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F05_748010.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1AZ TCGA-E2-A1AZ-01A TCGA-E2-A1AZ-01A-11D-A12N-01 9ca918d1-dde6-4812-b6b8-05a6fb2332c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F05_748010.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1AZ TCGA-E2-A1AZ-01A TCGA-E2-A1AZ-01A-11D-A12N-01 9ca918d1-dde6-4812-b6b8-05a6fb2332c3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F05_748010.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-E2-A1AZ TCGA-E2-A1AZ-01A TCGA-E2-A1AZ-01A-11D-A12Q-09 f961c932-cf37-47c8-8520-8d0d444dc94f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1AZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1AZ TCGA-E2-A1AZ-01A TCGA-E2-A1AZ-01A-11D-A12Q-09 f961c932-cf37-47c8-8520-8d0d444dc94f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A1AZ TCGA-E2-A1AZ-01A TCGA-E2-A1AZ-01A-11D-A12R-05 27a52479-1837-4006-b248-98d74f1c67af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1AZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1AZ TCGA-E2-A1AZ-01A TCGA-E2-A1AZ-01A-11D-A12R-05 27a52479-1837-4006-b248-98d74f1c67af DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324037_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A1AZ TCGA-E2-A1AZ-01A TCGA-E2-A1AZ-01A-11D-A12R-05 27a52479-1837-4006-b248-98d74f1c67af DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324037_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A1AZ TCGA-E2-A1AZ-01A TCGA-E2-A1AZ-01A-11D-A12R-05 27a52479-1837-4006-b248-98d74f1c67af DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-E2-A1AZ-01A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-E2-A1AZ TCGA-E2-A1AZ-01A TCGA-E2-A1AZ-01A-11D-A12R-05 27a52479-1837-4006-b248-98d74f1c67af DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-E2-A1AZ-01A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-E2-A1AZ TCGA-E2-A1AZ-01A TCGA-E2-A1AZ-01A-11R-A12O-13 6a3e226a-8d2d-482c-a9e2-81aad2bb25a8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1AZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1AZ TCGA-E2-A1AZ-01A TCGA-E2-A1AZ-01A-11R-A12P-07 fa462e79-c5a4-4ddc-b3e6-32e8adcdd80c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1AZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1AZ TCGA-E2-A1AZ-01A TCGA-E2-A1AZ-01A-11R-A12P-07 fa462e79-c5a4-4ddc-b3e6-32e8adcdd80c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012955_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A1AZ TCGA-E2-A1AZ-01A TCGA-E2-A1AZ-01A-11R-A12P-07 fa462e79-c5a4-4ddc-b3e6-32e8adcdd80c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012955_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A1AZ TCGA-E2-A1AZ-01A TCGA-E2-A1AZ-01A-11R-A12P-07 fa462e79-c5a4-4ddc-b3e6-32e8adcdd80c Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012955_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A1AZ TCGA-E2-A1AZ-01A TCGA-E2-A1AZ-01A-11W-A14O-09 38e8ecb3-20f9-4dfb-ba54-f7751cb32726 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1AZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1AZ TCGA-E2-A1AZ-10A TCGA-E2-A1AZ-10A-01D-A12M-02 b9900501-7eac-4c24-ad6d-e199c364407f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1AZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1AZ TCGA-E2-A1AZ-10A TCGA-E2-A1AZ-10A-01D-A12N-01 c1cfdf6c-d30b-49c8-9875-d39d65e925b5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1AZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B01_747920.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B01_747920.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B01_747920.ismpolish.data.txt'. TCGA-E2-A1AZ TCGA-E2-A1AZ-10A TCGA-E2-A1AZ-10A-01D-A12N-01 c1cfdf6c-d30b-49c8-9875-d39d65e925b5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B01_747920.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B01_747920.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B01_747920.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B01_747920.ismpolish.data.txt'. TCGA-E2-A1AZ TCGA-E2-A1AZ-10A TCGA-E2-A1AZ-10A-01D-A12N-01 c1cfdf6c-d30b-49c8-9875-d39d65e925b5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B01_747920.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B01_747920.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B01_747920.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B01_747920.ismpolish.data.txt'. TCGA-E2-A1AZ TCGA-E2-A1AZ-10A TCGA-E2-A1AZ-10A-01D-A12Q-09 d486a6d4-f7b9-4df1-b14f-df434c457363 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1AZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1AZ TCGA-E2-A1AZ-10A TCGA-E2-A1AZ-10A-01D-A12Q-09 d486a6d4-f7b9-4df1-b14f-df434c457363 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A1AZ TCGA-E2-A1AZ-10A TCGA-E2-A1AZ-10A-01W-A14O-09 cb8c2ace-8a39-450f-a070-c5cb03fbe298 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1AZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11D-A12M-02 b8b5d494-3238-4203-9534-d7b5ab50a68c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11D-A12N-01 fd63fcef-ebac-4386-beb6-29d42bdae2d9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11D-A12N-01 fd63fcef-ebac-4386-beb6-29d42bdae2d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B03_747910.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11D-A12N-01 fd63fcef-ebac-4386-beb6-29d42bdae2d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B03_747910.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11D-A12N-01 fd63fcef-ebac-4386-beb6-29d42bdae2d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B03_747910.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11D-A12N-01 fd63fcef-ebac-4386-beb6-29d42bdae2d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B03_747910.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11D-A12N-01 fd63fcef-ebac-4386-beb6-29d42bdae2d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B03_747910.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11D-A12N-01 fd63fcef-ebac-4386-beb6-29d42bdae2d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B03_747910.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11D-A12N-01 fd63fcef-ebac-4386-beb6-29d42bdae2d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B03_747910.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11D-A12N-01 fd63fcef-ebac-4386-beb6-29d42bdae2d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B03_747910.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11D-A12Q-09 14e3b00c-cbec-4733-8fa4-829b8e7d9808 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11D-A12Q-09 14e3b00c-cbec-4733-8fa4-829b8e7d9808 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11D-A12R-05 2e957d41-5fe9-42d0-a3b4-cb286ff57c4e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11D-A12R-05 2e957d41-5fe9-42d0-a3b4-cb286ff57c4e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324037_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11D-A12R-05 2e957d41-5fe9-42d0-a3b4-cb286ff57c4e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324037_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11D-A12R-05 2e957d41-5fe9-42d0-a3b4-cb286ff57c4e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-E2-A1B0-01A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11D-A12R-05 2e957d41-5fe9-42d0-a3b4-cb286ff57c4e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-E2-A1B0-01A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11R-A12O-13 42c58592-eed3-4372-9d26-19739548c908 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11R-A12O-13 42c58592-eed3-4372-9d26-19739548c908 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1B0-01A-11R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11R-A12O-13 42c58592-eed3-4372-9d26-19739548c908 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1B0-01A-11R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11R-A12P-07 8bb3543b-5c83-41c6-b81c-b20935c38d72 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11R-A12P-07 8bb3543b-5c83-41c6-b81c-b20935c38d72 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012963_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11R-A12P-07 8bb3543b-5c83-41c6-b81c-b20935c38d72 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012963_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11R-A12P-07 8bb3543b-5c83-41c6-b81c-b20935c38d72 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012963_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11R-A12P-07 8bb3543b-5c83-41c6-b81c-b20935c38d72 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407963.TCGA-E2-A1B0-01A-11R-A12P-07.110725_UNC11-SN627_0129_BC040FABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11R-A12P-07 8bb3543b-5c83-41c6-b81c-b20935c38d72 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408021.TCGA-E2-A1B0-01A-11R-A12P-07.110725_UNC11-SN627_0129_BC040FABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11R-A12P-07 8bb3543b-5c83-41c6-b81c-b20935c38d72 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408093.TCGA-E2-A1B0-01A-11R-A12P-07.110725_UNC11-SN627_0129_BC040FABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-01A TCGA-E2-A1B0-01A-11W-A14O-09 66d8f7cc-4c02-4885-9368-a529314985c5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-10A TCGA-E2-A1B0-10A-01D-A12M-02 66f6be4d-0415-4b32-9c94-4fd4fdd91c77 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-10A TCGA-E2-A1B0-10A-01D-A12N-01 4ea47843-6894-4938-9aee-4fb8713b3581 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-10A TCGA-E2-A1B0-10A-01D-A12N-01 4ea47843-6894-4938-9aee-4fb8713b3581 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F10_747982.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-E2-A1B0 TCGA-E2-A1B0-10A TCGA-E2-A1B0-10A-01D-A12N-01 4ea47843-6894-4938-9aee-4fb8713b3581 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F10_747982.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-10A TCGA-E2-A1B0-10A-01D-A12N-01 4ea47843-6894-4938-9aee-4fb8713b3581 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F10_747982.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-10A TCGA-E2-A1B0-10A-01D-A12N-01 4ea47843-6894-4938-9aee-4fb8713b3581 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F10_747982.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-10A TCGA-E2-A1B0-10A-01D-A12N-01 4ea47843-6894-4938-9aee-4fb8713b3581 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F10_747982.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-10A TCGA-E2-A1B0-10A-01D-A12N-01 4ea47843-6894-4938-9aee-4fb8713b3581 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F10_747982.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-10A TCGA-E2-A1B0-10A-01D-A12N-01 4ea47843-6894-4938-9aee-4fb8713b3581 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F10_747982.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-10A TCGA-E2-A1B0-10A-01D-A12N-01 4ea47843-6894-4938-9aee-4fb8713b3581 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F10_747982.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-10A TCGA-E2-A1B0-10A-01D-A12Q-09 ce4b0897-884b-4483-b105-7677ddcb341d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-10A TCGA-E2-A1B0-10A-01D-A12Q-09 ce4b0897-884b-4483-b105-7677ddcb341d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A1B0 TCGA-E2-A1B0-10A TCGA-E2-A1B0-10A-01W-A14O-09 33dd1a4b-c395-42ff-bfa7-34066b5029ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21D-A12M-02 b08b027c-27e0-4638-9520-cd0784c535e9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21D-A12N-01 f4171ca1-a9b6-4e8a-8e80-a259329ac696 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21D-A12N-01 f4171ca1-a9b6-4e8a-8e80-a259329ac696 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F12_747970.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21D-A12N-01 f4171ca1-a9b6-4e8a-8e80-a259329ac696 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F12_747970.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21D-A12N-01 f4171ca1-a9b6-4e8a-8e80-a259329ac696 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F12_747970.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21D-A12N-01 f4171ca1-a9b6-4e8a-8e80-a259329ac696 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F12_747970.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21D-A12N-01 f4171ca1-a9b6-4e8a-8e80-a259329ac696 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F12_747970.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21D-A12N-01 f4171ca1-a9b6-4e8a-8e80-a259329ac696 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F12_747970.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21D-A12N-01 f4171ca1-a9b6-4e8a-8e80-a259329ac696 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F12_747970.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21D-A12N-01 f4171ca1-a9b6-4e8a-8e80-a259329ac696 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F12_747970.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21D-A12Q-09 a6e77a14-e5e5-452e-a46f-5629ee8228e3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21D-A12Q-09 a6e77a14-e5e5-452e-a46f-5629ee8228e3 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21D-A12R-05 e8640ded-fdcf-41f1-81cc-47eb7284b1c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21D-A12R-05 e8640ded-fdcf-41f1-81cc-47eb7284b1c1 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324037_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21D-A12R-05 e8640ded-fdcf-41f1-81cc-47eb7284b1c1 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324037_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21D-A12R-05 e8640ded-fdcf-41f1-81cc-47eb7284b1c1 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-E2-A1B1-01A-21D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21D-A12R-05 e8640ded-fdcf-41f1-81cc-47eb7284b1c1 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-E2-A1B1-01A-21D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21R-A12O-13 e56f91a8-0105-4f2d-86cc-e018248af753 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21R-A12O-13 e56f91a8-0105-4f2d-86cc-e018248af753 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1B1-01A-21R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21R-A12O-13 e56f91a8-0105-4f2d-86cc-e018248af753 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1B1-01A-21R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21R-A12P-07 2aa34033-a6f5-45a8-833b-b433352e58ba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21R-A12P-07 2aa34033-a6f5-45a8-833b-b433352e58ba Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013051_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21R-A12P-07 2aa34033-a6f5-45a8-833b-b433352e58ba Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013051_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21R-A12P-07 2aa34033-a6f5-45a8-833b-b433352e58ba Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013051_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21R-A12P-07 2aa34033-a6f5-45a8-833b-b433352e58ba RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407888.TCGA-E2-A1B1-01A-21R-A12P-07.110725_UNC11-SN627_0129_BC040FABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21R-A12P-07 2aa34033-a6f5-45a8-833b-b433352e58ba RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407901.TCGA-E2-A1B1-01A-21R-A12P-07.110725_UNC11-SN627_0129_BC040FABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21R-A12P-07 2aa34033-a6f5-45a8-833b-b433352e58ba RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_408026.TCGA-E2-A1B1-01A-21R-A12P-07.110725_UNC11-SN627_0129_BC040FABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-01A TCGA-E2-A1B1-01A-21W-A14O-09 9fc362fa-b364-4a2a-9db6-a8d2127a6e45 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-10A TCGA-E2-A1B1-10A-01D-A12M-02 0f2d6a81-2465-4702-90c9-10ecf46e429e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-10A TCGA-E2-A1B1-10A-01D-A12N-01 cbc8e090-5369-40d5-931f-baa2fa2017e3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-10A TCGA-E2-A1B1-10A-01D-A12N-01 cbc8e090-5369-40d5-931f-baa2fa2017e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G02_748006.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-E2-A1B1 TCGA-E2-A1B1-10A TCGA-E2-A1B1-10A-01D-A12N-01 cbc8e090-5369-40d5-931f-baa2fa2017e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G02_748006.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-10A TCGA-E2-A1B1-10A-01D-A12N-01 cbc8e090-5369-40d5-931f-baa2fa2017e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G02_748006.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-10A TCGA-E2-A1B1-10A-01D-A12N-01 cbc8e090-5369-40d5-931f-baa2fa2017e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G02_748006.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-10A TCGA-E2-A1B1-10A-01D-A12N-01 cbc8e090-5369-40d5-931f-baa2fa2017e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G02_748006.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-10A TCGA-E2-A1B1-10A-01D-A12N-01 cbc8e090-5369-40d5-931f-baa2fa2017e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G02_748006.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-10A TCGA-E2-A1B1-10A-01D-A12N-01 cbc8e090-5369-40d5-931f-baa2fa2017e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G02_748006.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-10A TCGA-E2-A1B1-10A-01D-A12N-01 cbc8e090-5369-40d5-931f-baa2fa2017e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G02_748006.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-10A TCGA-E2-A1B1-10A-01D-A12Q-09 6aec902b-6a2e-4cfa-b294-785057c147ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-10A TCGA-E2-A1B1-10A-01D-A12Q-09 6aec902b-6a2e-4cfa-b294-785057c147ef Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A1B1 TCGA-E2-A1B1-10A TCGA-E2-A1B1-10A-01W-A14O-09 9de7b056-ab4a-48e9-b7de-11e8d906eef4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11D-A12M-02 9302bd77-28c4-4f05-bda4-1b69db7c07ca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11D-A12N-01 f64a244c-40c8-4689-bd55-3263bb01f9fa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11D-A12N-01 f64a244c-40c8-4689-bd55-3263bb01f9fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E02_748004.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11D-A12N-01 f64a244c-40c8-4689-bd55-3263bb01f9fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E02_748004.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11D-A12N-01 f64a244c-40c8-4689-bd55-3263bb01f9fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E02_748004.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11D-A12N-01 f64a244c-40c8-4689-bd55-3263bb01f9fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E02_748004.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11D-A12N-01 f64a244c-40c8-4689-bd55-3263bb01f9fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E02_748004.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11D-A12N-01 f64a244c-40c8-4689-bd55-3263bb01f9fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E02_748004.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11D-A12N-01 f64a244c-40c8-4689-bd55-3263bb01f9fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E02_748004.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11D-A12N-01 f64a244c-40c8-4689-bd55-3263bb01f9fa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E02_748004.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11D-A12Q-09 a6aa4529-7996-4b66-9632-2559293db35d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11D-A12Q-09 a6aa4529-7996-4b66-9632-2559293db35d Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11D-A12R-05 3034f2b6-9d22-49cb-b2f0-52859b4cc7ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11D-A12R-05 3034f2b6-9d22-49cb-b2f0-52859b4cc7ec DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324072_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11D-A12R-05 3034f2b6-9d22-49cb-b2f0-52859b4cc7ec DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324072_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11D-A12R-05 3034f2b6-9d22-49cb-b2f0-52859b4cc7ec DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-E2-A1B4-01A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11D-A12R-05 3034f2b6-9d22-49cb-b2f0-52859b4cc7ec DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-E2-A1B4-01A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11R-A12O-13 f2bbcec8-a0ff-421d-9731-3062b3e2435b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11R-A12O-13 f2bbcec8-a0ff-421d-9731-3062b3e2435b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1B4-01A-11R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11R-A12O-13 f2bbcec8-a0ff-421d-9731-3062b3e2435b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1B4-01A-11R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11R-A12P-07 2d51ae30-4c8a-4c99-b216-fc4fbda0fbb6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11R-A12P-07 2d51ae30-4c8a-4c99-b216-fc4fbda0fbb6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013057_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11R-A12P-07 2d51ae30-4c8a-4c99-b216-fc4fbda0fbb6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013057_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11R-A12P-07 2d51ae30-4c8a-4c99-b216-fc4fbda0fbb6 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013057_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11R-A12P-07 2d51ae30-4c8a-4c99-b216-fc4fbda0fbb6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407952.TCGA-E2-A1B4-01A-11R-A12P-07.110725_UNC11-SN627_0129_BC040FABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11R-A12P-07 2d51ae30-4c8a-4c99-b216-fc4fbda0fbb6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407958.TCGA-E2-A1B4-01A-11R-A12P-07.110725_UNC11-SN627_0129_BC040FABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11R-A12P-07 2d51ae30-4c8a-4c99-b216-fc4fbda0fbb6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_407993.TCGA-E2-A1B4-01A-11R-A12P-07.110725_UNC11-SN627_0129_BC040FABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-01A TCGA-E2-A1B4-01A-11W-A14O-09 b430d285-1ec1-4d98-a97a-30294339ed4f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-10A TCGA-E2-A1B4-10A-01D-A12M-02 aa192658-f404-4753-8fb3-2d237e634742 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-10A TCGA-E2-A1B4-10A-01D-A12N-01 8df8fd86-95c3-409e-af2c-50f47ac7aee5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-10A TCGA-E2-A1B4-10A-01D-A12N-01 8df8fd86-95c3-409e-af2c-50f47ac7aee5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H05_748022.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-E2-A1B4 TCGA-E2-A1B4-10A TCGA-E2-A1B4-10A-01D-A12N-01 8df8fd86-95c3-409e-af2c-50f47ac7aee5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H05_748022.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-10A TCGA-E2-A1B4-10A-01D-A12N-01 8df8fd86-95c3-409e-af2c-50f47ac7aee5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H05_748022.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-10A TCGA-E2-A1B4-10A-01D-A12N-01 8df8fd86-95c3-409e-af2c-50f47ac7aee5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H05_748022.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-10A TCGA-E2-A1B4-10A-01D-A12N-01 8df8fd86-95c3-409e-af2c-50f47ac7aee5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H05_748022.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-10A TCGA-E2-A1B4-10A-01D-A12N-01 8df8fd86-95c3-409e-af2c-50f47ac7aee5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H05_748022.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-10A TCGA-E2-A1B4-10A-01D-A12N-01 8df8fd86-95c3-409e-af2c-50f47ac7aee5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H05_748022.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-10A TCGA-E2-A1B4-10A-01D-A12N-01 8df8fd86-95c3-409e-af2c-50f47ac7aee5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H05_748022.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-10A TCGA-E2-A1B4-10A-01D-A12Q-09 45514149-d01b-4bc9-864b-ed556da905c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-10A TCGA-E2-A1B4-10A-01D-A12Q-09 45514149-d01b-4bc9-864b-ed556da905c1 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A1B4 TCGA-E2-A1B4-10A TCGA-E2-A1B4-10A-01W-A14O-09 65a6f682-9417-44d6-b7f2-38bb0796124e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21D-A12M-02 ef812a7e-90cf-40f2-9cc6-5cc319ff8da1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21D-A12N-01 4fd5a826-8410-4572-9403-960947308df7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21D-A12N-01 4fd5a826-8410-4572-9403-960947308df7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E05_748038.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21D-A12N-01 4fd5a826-8410-4572-9403-960947308df7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E05_748038.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21D-A12N-01 4fd5a826-8410-4572-9403-960947308df7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E05_748038.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21D-A12N-01 4fd5a826-8410-4572-9403-960947308df7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E05_748038.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21D-A12N-01 4fd5a826-8410-4572-9403-960947308df7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E05_748038.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21D-A12N-01 4fd5a826-8410-4572-9403-960947308df7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E05_748038.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21D-A12N-01 4fd5a826-8410-4572-9403-960947308df7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E05_748038.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21D-A12N-01 4fd5a826-8410-4572-9403-960947308df7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E05_748038.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21D-A12Q-09 58660f5f-2196-4a1f-a102-f173b9ce629b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21D-A12Q-09 58660f5f-2196-4a1f-a102-f173b9ce629b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21D-A12R-05 1cc57117-3003-419b-af5b-4a992ded90bf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21D-A12R-05 1cc57117-3003-419b-af5b-4a992ded90bf DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324072_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21D-A12R-05 1cc57117-3003-419b-af5b-4a992ded90bf DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324072_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21D-A12R-05 1cc57117-3003-419b-af5b-4a992ded90bf DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-E2-A1B5-01A-21D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21D-A12R-05 1cc57117-3003-419b-af5b-4a992ded90bf DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-E2-A1B5-01A-21D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21R-A12O-13 ae4e6737-64d9-42f2-90df-2b506ceed9c6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21R-A12O-13 ae4e6737-64d9-42f2-90df-2b506ceed9c6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1B5-01A-21R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21R-A12O-13 ae4e6737-64d9-42f2-90df-2b506ceed9c6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1B5-01A-21R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21R-A12P-07 a2c80f8e-f08d-4574-90a0-f0651c0a9b1b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21R-A12P-07 a2c80f8e-f08d-4574-90a0-f0651c0a9b1b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013062_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21R-A12P-07 a2c80f8e-f08d-4574-90a0-f0651c0a9b1b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013062_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21R-A12P-07 a2c80f8e-f08d-4574-90a0-f0651c0a9b1b Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013062_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21R-A12P-07 a2c80f8e-f08d-4574-90a0-f0651c0a9b1b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446110.TCGA-E2-A1B5-01A-21R-A12P-07.110824_UNC13-SN749_0098_AC03YVABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21R-A12P-07 a2c80f8e-f08d-4574-90a0-f0651c0a9b1b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446117.TCGA-E2-A1B5-01A-21R-A12P-07.110824_UNC13-SN749_0098_AC03YVABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21R-A12P-07 a2c80f8e-f08d-4574-90a0-f0651c0a9b1b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446253.TCGA-E2-A1B5-01A-21R-A12P-07.110824_UNC13-SN749_0098_AC03YVABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-01A TCGA-E2-A1B5-01A-21W-A14O-09 a7d29c7b-9aa4-4d56-923f-3efd35b96e40 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-10A TCGA-E2-A1B5-10A-01D-A12M-02 d52462e5-7927-47a8-bb3e-8a0b893d2de8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-10A TCGA-E2-A1B5-10A-01D-A12N-01 48e1015e-093e-44c7-b2cf-045e95b34875 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-10A TCGA-E2-A1B5-10A-01D-A12N-01 48e1015e-093e-44c7-b2cf-045e95b34875 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G06_748042.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-E2-A1B5 TCGA-E2-A1B5-10A TCGA-E2-A1B5-10A-01D-A12N-01 48e1015e-093e-44c7-b2cf-045e95b34875 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G06_748042.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-10A TCGA-E2-A1B5-10A-01D-A12N-01 48e1015e-093e-44c7-b2cf-045e95b34875 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G06_748042.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-10A TCGA-E2-A1B5-10A-01D-A12N-01 48e1015e-093e-44c7-b2cf-045e95b34875 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G06_748042.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-10A TCGA-E2-A1B5-10A-01D-A12N-01 48e1015e-093e-44c7-b2cf-045e95b34875 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G06_748042.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-10A TCGA-E2-A1B5-10A-01D-A12N-01 48e1015e-093e-44c7-b2cf-045e95b34875 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G06_748042.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-10A TCGA-E2-A1B5-10A-01D-A12N-01 48e1015e-093e-44c7-b2cf-045e95b34875 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G06_748042.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-10A TCGA-E2-A1B5-10A-01D-A12N-01 48e1015e-093e-44c7-b2cf-045e95b34875 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_G06_748042.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-10A TCGA-E2-A1B5-10A-01D-A12Q-09 aab6dd17-aa36-42fa-a54e-59c68c8922e7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-10A TCGA-E2-A1B5-10A-01D-A12Q-09 aab6dd17-aa36-42fa-a54e-59c68c8922e7 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-10A TCGA-E2-A1B5-10A-01W-A14O-09 43cf5f1d-552c-4fba-badb-0e08996c8c59 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-11A TCGA-E2-A1B5-11A-23D-A12M-02 622b2b20-d691-4041-833f-c940bf7eafc0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-11A TCGA-E2-A1B5-11A-23D-A12N-01 153321cb-e495-42f6-9c65-a64a33c068b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B10_747966.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B10_747966.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B10_747966.ismpolish.data.txt'. TCGA-E2-A1B5 TCGA-E2-A1B5-11A TCGA-E2-A1B5-11A-23D-A12N-01 153321cb-e495-42f6-9c65-a64a33c068b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B10_747966.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B10_747966.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B10_747966.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B10_747966.ismpolish.data.txt'. TCGA-E2-A1B5 TCGA-E2-A1B5-11A TCGA-E2-A1B5-11A-23D-A12N-01 153321cb-e495-42f6-9c65-a64a33c068b2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B10_747966.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B10_747966.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B10_747966.ismpolish.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_B10_747966.ismpolish.data.txt'. TCGA-E2-A1B5 TCGA-E2-A1B5-11A TCGA-E2-A1B5-11A-23D-A12Q-09 86a6c2ed-a48a-4c8b-9af9-ef10d6fadf26 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-11A TCGA-E2-A1B5-11A-23D-A12Q-09 86a6c2ed-a48a-4c8b-9af9-ef10d6fadf26 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-11A TCGA-E2-A1B5-11A-23D-A12R-05 5a3c0585-4223-4081-b0ae-15d446576b0b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-11A TCGA-E2-A1B5-11A-23D-A12R-05 5a3c0585-4223-4081-b0ae-15d446576b0b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324030_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-11A TCGA-E2-A1B5-11A-23D-A12R-05 5a3c0585-4223-4081-b0ae-15d446576b0b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324030_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-11A TCGA-E2-A1B5-11A-23D-A12R-05 5a3c0585-4223-4081-b0ae-15d446576b0b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-E2-A1B5-11A-23D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-11A TCGA-E2-A1B5-11A-23D-A12R-05 5a3c0585-4223-4081-b0ae-15d446576b0b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-E2-A1B5-11A-23D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-E2-A1B5 TCGA-E2-A1B5-11A TCGA-E2-A1B5-11A-23W-A14O-09 ef350507-9f90-4658-8bd1-22f11f5ef0a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31D-A12M-02 333fbd26-95a1-4978-9a71-d3aa486fe87f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31D-A12N-01 29e8a47e-a20b-40c2-98dc-885a21dbf7a3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31D-A12N-01 29e8a47e-a20b-40c2-98dc-885a21dbf7a3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E09_747924.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31D-A12N-01 29e8a47e-a20b-40c2-98dc-885a21dbf7a3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E09_747924.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31D-A12N-01 29e8a47e-a20b-40c2-98dc-885a21dbf7a3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E09_747924.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31D-A12N-01 29e8a47e-a20b-40c2-98dc-885a21dbf7a3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E09_747924.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31D-A12N-01 29e8a47e-a20b-40c2-98dc-885a21dbf7a3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E09_747924.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31D-A12N-01 29e8a47e-a20b-40c2-98dc-885a21dbf7a3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E09_747924.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31D-A12N-01 29e8a47e-a20b-40c2-98dc-885a21dbf7a3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E09_747924.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31D-A12N-01 29e8a47e-a20b-40c2-98dc-885a21dbf7a3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E09_747924.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31D-A12Q-09 1aaf88fc-f7cb-4239-a420-224352194160 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31D-A12Q-09 1aaf88fc-f7cb-4239-a420-224352194160 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31D-A12R-05 aa9dc448-fa91-4cef-afde-214f6b6c247d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31D-A12R-05 aa9dc448-fa91-4cef-afde-214f6b6c247d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324072_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31D-A12R-05 aa9dc448-fa91-4cef-afde-214f6b6c247d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324072_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31D-A12R-05 aa9dc448-fa91-4cef-afde-214f6b6c247d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-E2-A1B6-01A-31D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31D-A12R-05 aa9dc448-fa91-4cef-afde-214f6b6c247d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-E2-A1B6-01A-31D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31R-A12O-13 35f16f70-d6b5-4d72-8c09-7ae4d8ab1e69 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31R-A12O-13 35f16f70-d6b5-4d72-8c09-7ae4d8ab1e69 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1B6-01A-31R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31R-A12O-13 35f16f70-d6b5-4d72-8c09-7ae4d8ab1e69 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1B6-01A-31R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31R-A12P-07 eb398b00-8669-4c22-8285-03cdf76436f3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31R-A12P-07 eb398b00-8669-4c22-8285-03cdf76436f3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013082_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31R-A12P-07 eb398b00-8669-4c22-8285-03cdf76436f3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013082_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31R-A12P-07 eb398b00-8669-4c22-8285-03cdf76436f3 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013082_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31R-A12P-07 eb398b00-8669-4c22-8285-03cdf76436f3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446122.TCGA-E2-A1B6-01A-31R-A12P-07.110824_UNC13-SN749_0098_AC03YVABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31R-A12P-07 eb398b00-8669-4c22-8285-03cdf76436f3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446132.TCGA-E2-A1B6-01A-31R-A12P-07.110824_UNC13-SN749_0098_AC03YVABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31R-A12P-07 eb398b00-8669-4c22-8285-03cdf76436f3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446161.TCGA-E2-A1B6-01A-31R-A12P-07.110824_UNC13-SN749_0098_AC03YVABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-01A TCGA-E2-A1B6-01A-31W-A14O-09 6bb3610e-45dc-4645-8f18-eef63f95c4cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-10A TCGA-E2-A1B6-10A-01D-A12M-02 fa9ae608-29ce-408f-89ba-e48c9011e700 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-10A TCGA-E2-A1B6-10A-01D-A12N-01 1680f61d-e463-4a20-9add-5b2f990dba73 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-10A TCGA-E2-A1B6-10A-01D-A12N-01 1680f61d-e463-4a20-9add-5b2f990dba73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H08_748056.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-E2-A1B6 TCGA-E2-A1B6-10A TCGA-E2-A1B6-10A-01D-A12N-01 1680f61d-e463-4a20-9add-5b2f990dba73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H08_748056.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-10A TCGA-E2-A1B6-10A-01D-A12N-01 1680f61d-e463-4a20-9add-5b2f990dba73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H08_748056.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-10A TCGA-E2-A1B6-10A-01D-A12N-01 1680f61d-e463-4a20-9add-5b2f990dba73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H08_748056.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-10A TCGA-E2-A1B6-10A-01D-A12N-01 1680f61d-e463-4a20-9add-5b2f990dba73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H08_748056.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-10A TCGA-E2-A1B6-10A-01D-A12N-01 1680f61d-e463-4a20-9add-5b2f990dba73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H08_748056.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-10A TCGA-E2-A1B6-10A-01D-A12N-01 1680f61d-e463-4a20-9add-5b2f990dba73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H08_748056.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-10A TCGA-E2-A1B6-10A-01D-A12N-01 1680f61d-e463-4a20-9add-5b2f990dba73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H08_748056.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-10A TCGA-E2-A1B6-10A-01D-A12Q-09 409d90e2-1252-4a42-95d6-9625033b2c8f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-10A TCGA-E2-A1B6-10A-01D-A12Q-09 409d90e2-1252-4a42-95d6-9625033b2c8f Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A1B6 TCGA-E2-A1B6-10A TCGA-E2-A1B6-10A-01W-A14O-09 ea371fa7-013c-49fe-8a73-d284659755f1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1B6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-01A TCGA-E2-A1BC-01A-11D-A12M-02 88835254-9f45-48aa-bec7-20ba57984e8b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-01A TCGA-E2-A1BC-01A-11D-A12N-01 1085f98f-9f84-4d1e-9c07-f6b43cc571b7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-01A TCGA-E2-A1BC-01A-11D-A12N-01 1085f98f-9f84-4d1e-9c07-f6b43cc571b7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C04_747990.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-E2-A1BC TCGA-E2-A1BC-01A TCGA-E2-A1BC-01A-11D-A12N-01 1085f98f-9f84-4d1e-9c07-f6b43cc571b7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C04_747990.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-01A TCGA-E2-A1BC-01A-11D-A12N-01 1085f98f-9f84-4d1e-9c07-f6b43cc571b7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C04_747990.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-01A TCGA-E2-A1BC-01A-11D-A12N-01 1085f98f-9f84-4d1e-9c07-f6b43cc571b7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C04_747990.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-01A TCGA-E2-A1BC-01A-11D-A12N-01 1085f98f-9f84-4d1e-9c07-f6b43cc571b7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C04_747990.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-01A TCGA-E2-A1BC-01A-11D-A12N-01 1085f98f-9f84-4d1e-9c07-f6b43cc571b7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C04_747990.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-01A TCGA-E2-A1BC-01A-11D-A12N-01 1085f98f-9f84-4d1e-9c07-f6b43cc571b7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C04_747990.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-01A TCGA-E2-A1BC-01A-11D-A12N-01 1085f98f-9f84-4d1e-9c07-f6b43cc571b7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C04_747990.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-01A TCGA-E2-A1BC-01A-11D-A12Q-09 0a81e4de-8c1b-4b7c-a556-0ba59db7e9fe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-01A TCGA-E2-A1BC-01A-11D-A12R-05 67c47ce4-f07a-4a97-b191-74019ddffd1b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-01A TCGA-E2-A1BC-01A-11D-A12R-05 67c47ce4-f07a-4a97-b191-74019ddffd1b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324070_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-01A TCGA-E2-A1BC-01A-11D-A12R-05 67c47ce4-f07a-4a97-b191-74019ddffd1b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324070_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-01A TCGA-E2-A1BC-01A-11D-A12R-05 67c47ce4-f07a-4a97-b191-74019ddffd1b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-E2-A1BC-01A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-01A TCGA-E2-A1BC-01A-11D-A12R-05 67c47ce4-f07a-4a97-b191-74019ddffd1b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-E2-A1BC-01A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-01A TCGA-E2-A1BC-01A-11D-A14G-09 5947a9db-7d13-44ff-86ad-eb5e6c8dcec5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-01A TCGA-E2-A1BC-01A-11D-A14G-09 5947a9db-7d13-44ff-86ad-eb5e6c8dcec5 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-01A TCGA-E2-A1BC-01A-11R-A12O-13 12cdf52c-35e7-410d-8999-9be385346012 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-01A TCGA-E2-A1BC-01A-11R-A12O-13 12cdf52c-35e7-410d-8999-9be385346012 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1BC-01A-11R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-01A TCGA-E2-A1BC-01A-11R-A12O-13 12cdf52c-35e7-410d-8999-9be385346012 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1BC-01A-11R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-01A TCGA-E2-A1BC-01A-11R-A12P-07 a2cf164c-5b26-43eb-9de9-d1d457a5de06 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-01A TCGA-E2-A1BC-01A-11R-A12P-07 a2cf164c-5b26-43eb-9de9-d1d457a5de06 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976012943_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-01A TCGA-E2-A1BC-01A-11R-A12P-07 a2cf164c-5b26-43eb-9de9-d1d457a5de06 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976012943_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-01A TCGA-E2-A1BC-01A-11R-A12P-07 a2cf164c-5b26-43eb-9de9-d1d457a5de06 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976012943_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-01A TCGA-E2-A1BC-01A-11W-A14O-09 41aafbaf-4aa3-483c-97c6-b318cfb0e193 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-10A TCGA-E2-A1BC-10A-01D-A12M-02 dee3ef26-d9b6-4116-9a85-3a31fe3b7d18 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-10A TCGA-E2-A1BC-10A-01D-A12N-01 9d70cd35-2c9d-4fb0-aeac-4b8ccfd9b805 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-10A TCGA-E2-A1BC-10A-01D-A12N-01 9d70cd35-2c9d-4fb0-aeac-4b8ccfd9b805 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E12_747870.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-E2-A1BC TCGA-E2-A1BC-10A TCGA-E2-A1BC-10A-01D-A12N-01 9d70cd35-2c9d-4fb0-aeac-4b8ccfd9b805 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E12_747870.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-10A TCGA-E2-A1BC-10A-01D-A12N-01 9d70cd35-2c9d-4fb0-aeac-4b8ccfd9b805 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E12_747870.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-10A TCGA-E2-A1BC-10A-01D-A12N-01 9d70cd35-2c9d-4fb0-aeac-4b8ccfd9b805 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E12_747870.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-10A TCGA-E2-A1BC-10A-01D-A12N-01 9d70cd35-2c9d-4fb0-aeac-4b8ccfd9b805 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E12_747870.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-10A TCGA-E2-A1BC-10A-01D-A12N-01 9d70cd35-2c9d-4fb0-aeac-4b8ccfd9b805 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E12_747870.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-10A TCGA-E2-A1BC-10A-01D-A12N-01 9d70cd35-2c9d-4fb0-aeac-4b8ccfd9b805 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E12_747870.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-10A TCGA-E2-A1BC-10A-01D-A12N-01 9d70cd35-2c9d-4fb0-aeac-4b8ccfd9b805 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_E12_747870.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-10A TCGA-E2-A1BC-10A-01D-A12Q-09 6a4cd52f-2247-4caf-9b37-e90b02fd4d8b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-10A TCGA-E2-A1BC-10A-01D-A12Q-09 6a4cd52f-2247-4caf-9b37-e90b02fd4d8b Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-10A TCGA-E2-A1BC-10A-01W-A14O-09 90b23ed3-6abb-47ea-aefe-562ff7cab71b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32D-A12M-02 b0253d06-5b1d-493d-9ba7-6ffd17d0fef1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32D-A12N-01 8cdf4d2a-4c68-431e-af7d-b2adba3cb6d9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.seg.data.txt'. TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32D-A12N-01 8cdf4d2a-4c68-431e-af7d-b2adba3cb6d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.seg.data.txt'. TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32D-A12N-01 8cdf4d2a-4c68-431e-af7d-b2adba3cb6d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.seg.data.txt'. TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32D-A12N-01 8cdf4d2a-4c68-431e-af7d-b2adba3cb6d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.seg.data.txt'. TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32D-A12N-01 8cdf4d2a-4c68-431e-af7d-b2adba3cb6d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.seg.data.txt'. TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32D-A12N-01 8cdf4d2a-4c68-431e-af7d-b2adba3cb6d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.seg.data.txt'. TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32D-A12N-01 8cdf4d2a-4c68-431e-af7d-b2adba3cb6d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.seg.data.txt'. TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32D-A12N-01 8cdf4d2a-4c68-431e-af7d-b2adba3cb6d9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.nocnv_hg19.seg.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.seg.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1005.0 flagged aliquot to be excluded for analysis based on file 'JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_H07_747868.seg.data.txt'. TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32D-A12Q-09 13373e41-3f2b-4d8a-b67b-b83aaa87c293 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32D-A12Q-09 13373e41-3f2b-4d8a-b67b-b83aaa87c293 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32D-A12R-05 d549a7e8-655d-428a-a856-f934eef6869b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32D-A12R-05 d549a7e8-655d-428a-a856-f934eef6869b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324030_R05C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32D-A12R-05 d549a7e8-655d-428a-a856-f934eef6869b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324030_R05C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32D-A12R-05 d549a7e8-655d-428a-a856-f934eef6869b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-E2-A1BC-11A-32D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32D-A12R-05 d549a7e8-655d-428a-a856-f934eef6869b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-E2-A1BC-11A-32D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32R-A12O-13 8a995132-ff81-463e-8eb0-2030515de4a5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32R-A12O-13 8a995132-ff81-463e-8eb0-2030515de4a5 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1BC-11A-32R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32R-A12O-13 8a995132-ff81-463e-8eb0-2030515de4a5 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1BC-11A-32R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32R-A12P-07 afe373b9-f1c1-412d-9506-091749d47534 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32R-A12P-07 afe373b9-f1c1-412d-9506-091749d47534 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013083_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32R-A12P-07 afe373b9-f1c1-412d-9506-091749d47534 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013083_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32R-A12P-07 afe373b9-f1c1-412d-9506-091749d47534 Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013083_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32R-A12P-07 afe373b9-f1c1-412d-9506-091749d47534 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446124.TCGA-E2-A1BC-11A-32R-A12P-07.110824_UNC13-SN749_0098_AC03YVABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32R-A12P-07 afe373b9-f1c1-412d-9506-091749d47534 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446149.TCGA-E2-A1BC-11A-32R-A12P-07.110824_UNC13-SN749_0098_AC03YVABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32R-A12P-07 afe373b9-f1c1-412d-9506-091749d47534 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_446159.TCGA-E2-A1BC-11A-32R-A12P-07.110824_UNC13-SN749_0098_AC03YVABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 96 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1BC TCGA-E2-A1BC-11A TCGA-E2-A1BC-11A-32W-A14O-09 dcd7684b-c631-4c17-bfb8-8684a5153d22 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-01A TCGA-E2-A1BD-01A-11D-A12M-02 030b228c-52e3-47bc-ac78-01eed70499a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-01A TCGA-E2-A1BD-01A-11D-A12N-01 58138777-4be6-498c-9b6c-4dab28541ec7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-01A TCGA-E2-A1BD-01A-11D-A12N-01 58138777-4be6-498c-9b6c-4dab28541ec7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C11_748016.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-E2-A1BD TCGA-E2-A1BD-01A TCGA-E2-A1BD-01A-11D-A12N-01 58138777-4be6-498c-9b6c-4dab28541ec7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C11_748016.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-01A TCGA-E2-A1BD-01A-11D-A12N-01 58138777-4be6-498c-9b6c-4dab28541ec7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C11_748016.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-01A TCGA-E2-A1BD-01A-11D-A12N-01 58138777-4be6-498c-9b6c-4dab28541ec7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C11_748016.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-01A TCGA-E2-A1BD-01A-11D-A12N-01 58138777-4be6-498c-9b6c-4dab28541ec7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C11_748016.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-01A TCGA-E2-A1BD-01A-11D-A12N-01 58138777-4be6-498c-9b6c-4dab28541ec7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C11_748016.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-01A TCGA-E2-A1BD-01A-11D-A12N-01 58138777-4be6-498c-9b6c-4dab28541ec7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C11_748016.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-01A TCGA-E2-A1BD-01A-11D-A12N-01 58138777-4be6-498c-9b6c-4dab28541ec7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_C11_748016.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-01A TCGA-E2-A1BD-01A-11D-A12Q-09 f5ac1986-272b-48d2-9a73-4a550e38a997 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-01A TCGA-E2-A1BD-01A-11D-A12Q-09 f5ac1986-272b-48d2-9a73-4a550e38a997 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-01A TCGA-E2-A1BD-01A-11D-A12R-05 9dbbebb3-50d5-45b0-8b64-d2f2fc82bfbb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-01A TCGA-E2-A1BD-01A-11D-A12R-05 9dbbebb3-50d5-45b0-8b64-d2f2fc82bfbb DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324030_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-01A TCGA-E2-A1BD-01A-11D-A12R-05 9dbbebb3-50d5-45b0-8b64-d2f2fc82bfbb DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0/6042324030_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.7.1.0 96 07-NOV-11 05.35.19.637000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-01A TCGA-E2-A1BD-01A-11D-A12R-05 9dbbebb3-50d5-45b0-8b64-d2f2fc82bfbb DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-2.TCGA-E2-A1BD-01A-11D-A12R-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.7.1.0 96 07-NOV-11 05.18.52.196000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-01A TCGA-E2-A1BD-01A-11D-A12R-05 9dbbebb3-50d5-45b0-8b64-d2f2fc82bfbb DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0/jhu-usc.edu_BRCA.HumanMethylation450.7.lvl-3.TCGA-E2-A1BD-01A-11D-A12R-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.7.1.0 96 07-NOV-11 06.47.12.369000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-01A TCGA-E2-A1BD-01A-11R-A12O-13 adf8ccfd-21d2-4fb0-a81f-066719552419 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-01A TCGA-E2-A1BD-01A-11R-A12O-13 adf8ccfd-21d2-4fb0-a81f-066719552419 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1BD-01A-11R-A12O-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-01A TCGA-E2-A1BD-01A-11R-A12O-13 adf8ccfd-21d2-4fb0-a81f-066719552419 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1BD-01A-11R-A12O-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 96 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-01A TCGA-E2-A1BD-01A-11R-A12P-07 fa1917b0-c3e1-412d-b063-e74b5cafb8dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-01A TCGA-E2-A1BD-01A-11R-A12P-07 fa1917b0-c3e1-412d-b063-e74b5cafb8dc Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0/US82800149_251976013046_S01_GE2_105_Dec08.txt 1 unc.edu_BRCA.AgilentG4502A_07_3.Level_1.8.0.0 96 24-JUL-11 07.52.05.474000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-01A TCGA-E2-A1BD-01A-11R-A12P-07 fa1917b0-c3e1-412d-b063-e74b5cafb8dc Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0/US82800149_251976013046_S01_GE2_105_Dec08.txt_lmean.out.logratio.probe.tcga_level2.data.txt 2 unc.edu_BRCA.AgilentG4502A_07_3.Level_2.8.0.0 96 24-JUL-11 07.49.44.366000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-01A TCGA-E2-A1BD-01A-11R-A12P-07 fa1917b0-c3e1-412d-b063-e74b5cafb8dc Expression-Genes AgilentG4502A_07_3 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/agilentg4502a_07_3/transcriptome/unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0/US82800149_251976013046_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt 3 unc.edu_BRCA.AgilentG4502A_07_3.Level_3.8.0.0 96 24-JUL-11 07.50.27.960000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-01A TCGA-E2-A1BD-01A-11W-A14O-09 3c8e34f1-8175-4d69-9b67-9b3f22c40a1b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-10A TCGA-E2-A1BD-10A-01D-A12M-02 3f7cc7e7-0336-444f-b33b-c415fc981973 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-10A TCGA-E2-A1BD-10A-01D-A12N-01 4cfab748-1bea-492b-a8a4-80914c24a980 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-10A TCGA-E2-A1BD-10A-01D-A12N-01 4cfab748-1bea-492b-a8a4-80914c24a980 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F02_747958.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.96.1008.0 96 07-DEC-11 11.39.18.380000000 AM TCGA-E2-A1BD TCGA-E2-A1BD-10A TCGA-E2-A1BD-10A-01D-A12N-01 4cfab748-1bea-492b-a8a4-80914c24a980 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F02_747958.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-10A TCGA-E2-A1BD-10A-01D-A12N-01 4cfab748-1bea-492b-a8a4-80914c24a980 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F02_747958.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-10A TCGA-E2-A1BD-10A-01D-A12N-01 4cfab748-1bea-492b-a8a4-80914c24a980 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F02_747958.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-10A TCGA-E2-A1BD-10A-01D-A12N-01 4cfab748-1bea-492b-a8a4-80914c24a980 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F02_747958.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-10A TCGA-E2-A1BD-10A-01D-A12N-01 4cfab748-1bea-492b-a8a4-80914c24a980 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F02_747958.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-10A TCGA-E2-A1BD-10A-01D-A12N-01 4cfab748-1bea-492b-a8a4-80914c24a980 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F02_747958.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.96.1008.0 96 07-DEC-11 01.03.48.876000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-10A TCGA-E2-A1BD-10A-01D-A12N-01 4cfab748-1bea-492b-a8a4-80914c24a980 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0/JOUAL_p_TCGA_b96_SNP_N_GenomeWideSNP_6_F02_747958.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.96.1008.0 96 07-DEC-11 01.00.17.110000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-10A TCGA-E2-A1BD-10A-01D-A12Q-09 dcd144ae-c12f-492f-b5b4-3dd4626e27a4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-10A TCGA-E2-A1BD-10A-01D-A12Q-09 dcd144ae-c12f-492f-b5b4-3dd4626e27a4 Somatic Mutations IlluminaGA_DNASeq /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/gsc/genome.wustl.edu/illuminaga_dnaseq/mutations/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf 2 genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0 96 08-NOV-11 02.11.49.856000000 PM TCGA-E2-A1BD TCGA-E2-A1BD-10A TCGA-E2-A1BD-10A-01W-A14O-09 71df237c-6ed1-4f12-9842-db7f9bd9bae3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.96.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1BD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.96.12.0 96 12-JAN-12 08.53.09.435000000 PM TCGA-E2-A1IE TCGA-E2-A1IE-01A TCGA-E2-A1IE-01A-11D-A13I-02 79f01c91-8b2d-4f18-97e7-1995d61276f2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IE TCGA-E2-A1IE-01A TCGA-E2-A1IE-01A-11D-A13J-01 e3703f32-e1f2-4f3a-9861-6e25fdbd8144 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IE TCGA-E2-A1IE-01A TCGA-E2-A1IE-01A-11D-A13J-01 e3703f32-e1f2-4f3a-9861-6e25fdbd8144 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B03_772062.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-E2-A1IE TCGA-E2-A1IE-01A TCGA-E2-A1IE-01A-11D-A13J-01 e3703f32-e1f2-4f3a-9861-6e25fdbd8144 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B03_772062.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1IE TCGA-E2-A1IE-01A TCGA-E2-A1IE-01A-11D-A13J-01 e3703f32-e1f2-4f3a-9861-6e25fdbd8144 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B03_772062.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1IE TCGA-E2-A1IE-01A TCGA-E2-A1IE-01A-11D-A13J-01 e3703f32-e1f2-4f3a-9861-6e25fdbd8144 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B03_772062.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1IE TCGA-E2-A1IE-01A TCGA-E2-A1IE-01A-11D-A13J-01 e3703f32-e1f2-4f3a-9861-6e25fdbd8144 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B03_772062.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1IE TCGA-E2-A1IE-01A TCGA-E2-A1IE-01A-11D-A13J-01 e3703f32-e1f2-4f3a-9861-6e25fdbd8144 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B03_772062.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1IE TCGA-E2-A1IE-01A TCGA-E2-A1IE-01A-11D-A13J-01 e3703f32-e1f2-4f3a-9861-6e25fdbd8144 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B03_772062.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1IE TCGA-E2-A1IE-01A TCGA-E2-A1IE-01A-11D-A13J-01 e3703f32-e1f2-4f3a-9861-6e25fdbd8144 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B03_772062.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-E2-A1IE TCGA-E2-A1IE-01A TCGA-E2-A1IE-01A-11D-A13K-05 b3a187c1-495c-4615-a669-0e41adc3204e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IE TCGA-E2-A1IE-01A TCGA-E2-A1IE-01A-11D-A13K-05 b3a187c1-495c-4615-a669-0e41adc3204e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818128_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-E2-A1IE TCGA-E2-A1IE-01A TCGA-E2-A1IE-01A-11D-A13K-05 b3a187c1-495c-4615-a669-0e41adc3204e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818128_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-E2-A1IE TCGA-E2-A1IE-01A TCGA-E2-A1IE-01A-11D-A13K-05 b3a187c1-495c-4615-a669-0e41adc3204e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-E2-A1IE-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-E2-A1IE TCGA-E2-A1IE-01A TCGA-E2-A1IE-01A-11D-A13K-05 b3a187c1-495c-4615-a669-0e41adc3204e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-E2-A1IE-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-E2-A1IE TCGA-E2-A1IE-01A TCGA-E2-A1IE-01A-11D-A13L-09 a743538d-60e3-4078-8311-b0f07cbb5d3a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IE TCGA-E2-A1IE-01A TCGA-E2-A1IE-01A-11D-A188-09 e416f05b-c7d2-479b-8068-803492e86d86 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IE TCGA-E2-A1IE-01A TCGA-E2-A1IE-01A-11R-A13P-13 d83c6a95-cb50-4797-8444-a22cc72c38a5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IE TCGA-E2-A1IE-01A TCGA-E2-A1IE-01A-11R-A13P-13 d83c6a95-cb50-4797-8444-a22cc72c38a5 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1IE-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1IE TCGA-E2-A1IE-01A TCGA-E2-A1IE-01A-11R-A13P-13 d83c6a95-cb50-4797-8444-a22cc72c38a5 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1IE-01A-11R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1IE TCGA-E2-A1IE-01A TCGA-E2-A1IE-01A-11R-A13Q-07 ec6f69db-ff0b-491c-8b70-d53d0e7ad65f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IE TCGA-E2-A1IE-01A TCGA-E2-A1IE-01A-11R-A13Q-07 ec6f69db-ff0b-491c-8b70-d53d0e7ad65f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_400682.TCGA-E2-A1IE-01A-11R-A13Q-07.110729_UNC9-SN296_0211_BC046VABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1IE TCGA-E2-A1IE-01A TCGA-E2-A1IE-01A-11R-A13Q-07 ec6f69db-ff0b-491c-8b70-d53d0e7ad65f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_400688.TCGA-E2-A1IE-01A-11R-A13Q-07.110729_UNC9-SN296_0211_BC046VABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1IE TCGA-E2-A1IE-01A TCGA-E2-A1IE-01A-11R-A13Q-07 ec6f69db-ff0b-491c-8b70-d53d0e7ad65f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_400815.TCGA-E2-A1IE-01A-11R-A13Q-07.110729_UNC9-SN296_0211_BC046VABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1IE TCGA-E2-A1IE-01A TCGA-E2-A1IE-01A-11W-A14Q-09 7dd03e22-39ba-49b5-99c0-b3f97ff0ef8c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IE TCGA-E2-A1IE-10A TCGA-E2-A1IE-10A-01D-A13M-02 ebb391b6-74b6-4b7a-baa6-bf95866d516b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IE TCGA-E2-A1IE-10A TCGA-E2-A1IE-10A-01D-A13N-01 cd3b9c7c-f5f3-4622-8dbd-ba339bcf4b0a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IE TCGA-E2-A1IE-10A TCGA-E2-A1IE-10A-01D-A13N-01 cd3b9c7c-f5f3-4622-8dbd-ba339bcf4b0a SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-E2-A1IF-01A-11D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-E2-A1IF TCGA-E2-A1IF-01A TCGA-E2-A1IF-01A-11D-A145-05 e3e12340-3950-4bd1-bfa8-52142a99511c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-E2-A1IF-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-E2-A1IF TCGA-E2-A1IF-01A TCGA-E2-A1IF-01A-11R-A143-13 7843511a-6af8-4899-a996-535e7cd1b82e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IF TCGA-E2-A1IF-01A TCGA-E2-A1IF-01A-11R-A143-13 7843511a-6af8-4899-a996-535e7cd1b82e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1IF-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1IF TCGA-E2-A1IF-01A TCGA-E2-A1IF-01A-11R-A143-13 7843511a-6af8-4899-a996-535e7cd1b82e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1IF-01A-11R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1IF TCGA-E2-A1IF-01A TCGA-E2-A1IF-01A-11R-A144-07 34a8b02b-01a2-4f2d-8e8e-c3358d43665a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IF TCGA-E2-A1IF-01A TCGA-E2-A1IF-01A-11R-A144-07 34a8b02b-01a2-4f2d-8e8e-c3358d43665a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451618.TCGA-E2-A1IF-01A-11R-A144-07.110801_UNC12-SN629_0114_AC04B7ABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1IF TCGA-E2-A1IF-01A TCGA-E2-A1IF-01A-11R-A144-07 34a8b02b-01a2-4f2d-8e8e-c3358d43665a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451627.TCGA-E2-A1IF-01A-11R-A144-07.110801_UNC12-SN629_0114_AC04B7ABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1IF TCGA-E2-A1IF-01A TCGA-E2-A1IF-01A-11R-A144-07 34a8b02b-01a2-4f2d-8e8e-c3358d43665a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451655.TCGA-E2-A1IF-01A-11R-A144-07.110801_UNC12-SN629_0114_AC04B7ABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1IF TCGA-E2-A1IF-01A TCGA-E2-A1IF-01A-11W-A187-09 28d5f853-ddd4-48e7-9ef7-29c3a613a582 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IF TCGA-E2-A1IF-10A TCGA-E2-A1IF-10A-01D-A140-02 ec71624a-2c3a-4411-9aae-0b5640d376fe Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IF TCGA-E2-A1IF-10A TCGA-E2-A1IF-10A-01D-A141-01 ac01d192-98b8-49ca-a65e-17320a638b19 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IF TCGA-E2-A1IF-10A TCGA-E2-A1IF-10A-01D-A141-01 ac01d192-98b8-49ca-a65e-17320a638b19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F06_778088.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-E2-A1IF TCGA-E2-A1IF-10A TCGA-E2-A1IF-10A-01D-A141-01 ac01d192-98b8-49ca-a65e-17320a638b19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F06_778088.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IF TCGA-E2-A1IF-10A TCGA-E2-A1IF-10A-01D-A141-01 ac01d192-98b8-49ca-a65e-17320a638b19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F06_778088.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IF TCGA-E2-A1IF-10A TCGA-E2-A1IF-10A-01D-A141-01 ac01d192-98b8-49ca-a65e-17320a638b19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F06_778088.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IF TCGA-E2-A1IF-10A TCGA-E2-A1IF-10A-01D-A141-01 ac01d192-98b8-49ca-a65e-17320a638b19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F06_778088.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IF TCGA-E2-A1IF-10A TCGA-E2-A1IF-10A-01D-A141-01 ac01d192-98b8-49ca-a65e-17320a638b19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F06_778088.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IF TCGA-E2-A1IF-10A TCGA-E2-A1IF-10A-01D-A141-01 ac01d192-98b8-49ca-a65e-17320a638b19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F06_778088.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IF TCGA-E2-A1IF-10A TCGA-E2-A1IF-10A-01D-A141-01 ac01d192-98b8-49ca-a65e-17320a638b19 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F06_778088.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-E2-A1IF TCGA-E2-A1IF-10A TCGA-E2-A1IF-10A-01D-A142-09 34cbed4d-6aff-4293-8f12-931ad2f174ca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IF TCGA-E2-A1IF-10A TCGA-E2-A1IF-10A-01W-A187-09 fe57cf95-febe-4e36-a1b5-717f61e053d8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IF TCGA-E2-A1IF-11A TCGA-E2-A1IF-11A-22D-A145-05 81a47ef6-b23a-4f4a-aa55-1163644e820b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IF TCGA-E2-A1IF-11A TCGA-E2-A1IF-11A-22D-A145-05 81a47ef6-b23a-4f4a-aa55-1163644e820b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818122_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-E2-A1IF TCGA-E2-A1IF-11A TCGA-E2-A1IF-11A-22D-A145-05 81a47ef6-b23a-4f4a-aa55-1163644e820b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818122_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-E2-A1IF TCGA-E2-A1IF-11A TCGA-E2-A1IF-11A-22D-A145-05 81a47ef6-b23a-4f4a-aa55-1163644e820b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-E2-A1IF-11A-22D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-E2-A1IF TCGA-E2-A1IF-11A TCGA-E2-A1IF-11A-22D-A145-05 81a47ef6-b23a-4f4a-aa55-1163644e820b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-E2-A1IF-11A-22D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-01A TCGA-E2-A1IG-01A-11D-A140-02 701bcf3c-6693-4ffc-b1e7-c4930d860fc6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-01A TCGA-E2-A1IG-01A-11D-A141-01 e3df00a4-ca76-4515-b652-ba5903b82f99 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-01A TCGA-E2-A1IG-01A-11D-A141-01 e3df00a4-ca76-4515-b652-ba5903b82f99 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C02_778018.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-E2-A1IG TCGA-E2-A1IG-01A TCGA-E2-A1IG-01A-11D-A141-01 e3df00a4-ca76-4515-b652-ba5903b82f99 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C02_778018.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IG TCGA-E2-A1IG-01A TCGA-E2-A1IG-01A-11D-A141-01 e3df00a4-ca76-4515-b652-ba5903b82f99 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C02_778018.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IG TCGA-E2-A1IG-01A TCGA-E2-A1IG-01A-11D-A141-01 e3df00a4-ca76-4515-b652-ba5903b82f99 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C02_778018.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IG TCGA-E2-A1IG-01A TCGA-E2-A1IG-01A-11D-A141-01 e3df00a4-ca76-4515-b652-ba5903b82f99 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C02_778018.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IG TCGA-E2-A1IG-01A TCGA-E2-A1IG-01A-11D-A141-01 e3df00a4-ca76-4515-b652-ba5903b82f99 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C02_778018.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IG TCGA-E2-A1IG-01A TCGA-E2-A1IG-01A-11D-A141-01 e3df00a4-ca76-4515-b652-ba5903b82f99 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C02_778018.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IG TCGA-E2-A1IG-01A TCGA-E2-A1IG-01A-11D-A141-01 e3df00a4-ca76-4515-b652-ba5903b82f99 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C02_778018.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-01A TCGA-E2-A1IG-01A-11D-A142-09 84da47a3-49e1-4f94-bea9-dd20b6627adb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-01A TCGA-E2-A1IG-01A-11D-A145-05 b803471f-687d-454f-bd26-74929e5ba566 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-01A TCGA-E2-A1IG-01A-11D-A145-05 b803471f-687d-454f-bd26-74929e5ba566 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818122_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-01A TCGA-E2-A1IG-01A-11D-A145-05 b803471f-687d-454f-bd26-74929e5ba566 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818122_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-01A TCGA-E2-A1IG-01A-11D-A145-05 b803471f-687d-454f-bd26-74929e5ba566 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-E2-A1IG-01A-11D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-01A TCGA-E2-A1IG-01A-11D-A145-05 b803471f-687d-454f-bd26-74929e5ba566 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-E2-A1IG-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-01A TCGA-E2-A1IG-01A-11R-A143-13 f5fc00ea-f7cd-4183-be2c-cc53ac13a24f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-01A TCGA-E2-A1IG-01A-11R-A143-13 f5fc00ea-f7cd-4183-be2c-cc53ac13a24f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1IG-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-01A TCGA-E2-A1IG-01A-11R-A143-13 f5fc00ea-f7cd-4183-be2c-cc53ac13a24f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1IG-01A-11R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-01A TCGA-E2-A1IG-01A-11R-A144-07 d0705a73-e6d0-4282-82b1-76d44bda242f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-01A TCGA-E2-A1IG-01A-11R-A144-07 d0705a73-e6d0-4282-82b1-76d44bda242f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451625.TCGA-E2-A1IG-01A-11R-A144-07.110801_UNC12-SN629_0114_AC04B7ABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-01A TCGA-E2-A1IG-01A-11R-A144-07 d0705a73-e6d0-4282-82b1-76d44bda242f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451628.TCGA-E2-A1IG-01A-11R-A144-07.110801_UNC12-SN629_0114_AC04B7ABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-01A TCGA-E2-A1IG-01A-11R-A144-07 d0705a73-e6d0-4282-82b1-76d44bda242f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451656.TCGA-E2-A1IG-01A-11R-A144-07.110801_UNC12-SN629_0114_AC04B7ABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-01A TCGA-E2-A1IG-01A-11W-A187-09 5caa4489-8258-448e-afbe-5a318cda5c82 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-10A TCGA-E2-A1IG-10A-01D-A140-02 f39445c9-a8f2-42c0-b11b-90a53d1b019e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-10A TCGA-E2-A1IG-10A-01D-A141-01 346e958a-4073-4c56-bd70-fac3f9587075 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-10A TCGA-E2-A1IG-10A-01D-A141-01 346e958a-4073-4c56-bd70-fac3f9587075 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A02_778042.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-E2-A1IG TCGA-E2-A1IG-10A TCGA-E2-A1IG-10A-01D-A141-01 346e958a-4073-4c56-bd70-fac3f9587075 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A02_778042.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IG TCGA-E2-A1IG-10A TCGA-E2-A1IG-10A-01D-A141-01 346e958a-4073-4c56-bd70-fac3f9587075 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A02_778042.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IG TCGA-E2-A1IG-10A TCGA-E2-A1IG-10A-01D-A141-01 346e958a-4073-4c56-bd70-fac3f9587075 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A02_778042.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IG TCGA-E2-A1IG-10A TCGA-E2-A1IG-10A-01D-A141-01 346e958a-4073-4c56-bd70-fac3f9587075 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A02_778042.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IG TCGA-E2-A1IG-10A TCGA-E2-A1IG-10A-01D-A141-01 346e958a-4073-4c56-bd70-fac3f9587075 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A02_778042.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IG TCGA-E2-A1IG-10A TCGA-E2-A1IG-10A-01D-A141-01 346e958a-4073-4c56-bd70-fac3f9587075 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A02_778042.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IG TCGA-E2-A1IG-10A TCGA-E2-A1IG-10A-01D-A141-01 346e958a-4073-4c56-bd70-fac3f9587075 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A02_778042.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-10A TCGA-E2-A1IG-10A-01D-A142-09 9859da9f-72c1-4f68-a054-4d103170d785 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-10A TCGA-E2-A1IG-10A-01W-A187-09 704c5155-230d-48eb-8fa3-fa0134cfe72d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-11A TCGA-E2-A1IG-11A-22R-A143-13 6a9ab72e-3c8f-4b3d-826d-03668d9a248a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-11A TCGA-E2-A1IG-11A-22R-A143-13 6a9ab72e-3c8f-4b3d-826d-03668d9a248a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1IG-11A-22R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-11A TCGA-E2-A1IG-11A-22R-A143-13 6a9ab72e-3c8f-4b3d-826d-03668d9a248a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1IG-11A-22R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-11A TCGA-E2-A1IG-11A-22R-A144-07 1e55cf08-da43-471d-813c-9d37c7abc730 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-11A TCGA-E2-A1IG-11A-22R-A144-07 1e55cf08-da43-471d-813c-9d37c7abc730 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451082.TCGA-E2-A1IG-11A-22R-A144-07.110803_UNC15-SN850_0106_BD0DK2ABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-11A TCGA-E2-A1IG-11A-22R-A144-07 1e55cf08-da43-471d-813c-9d37c7abc730 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451115.TCGA-E2-A1IG-11A-22R-A144-07.110803_UNC15-SN850_0106_BD0DK2ABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1IG TCGA-E2-A1IG-11A TCGA-E2-A1IG-11A-22R-A144-07 1e55cf08-da43-471d-813c-9d37c7abc730 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451132.TCGA-E2-A1IG-11A-22R-A144-07.110803_UNC15-SN850_0106_BD0DK2ABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1IH TCGA-E2-A1IH-01A TCGA-E2-A1IH-01A-11D-A13I-02 676dc0eb-6f7d-4d7a-8ea3-037fb1e11fa3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IH TCGA-E2-A1IH-01A TCGA-E2-A1IH-01A-11D-A13J-01 ebd32da6-da68-4130-bd91-b15c230f5cdb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IH TCGA-E2-A1IH-01A TCGA-E2-A1IH-01A-11D-A13J-01 ebd32da6-da68-4130-bd91-b15c230f5cdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A01_772082.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-E2-A1IH TCGA-E2-A1IH-01A TCGA-E2-A1IH-01A-11D-A13J-01 ebd32da6-da68-4130-bd91-b15c230f5cdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A01_772082.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1IH TCGA-E2-A1IH-01A TCGA-E2-A1IH-01A-11D-A13J-01 ebd32da6-da68-4130-bd91-b15c230f5cdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A01_772082.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1IH TCGA-E2-A1IH-01A TCGA-E2-A1IH-01A-11D-A13J-01 ebd32da6-da68-4130-bd91-b15c230f5cdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A01_772082.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1IH TCGA-E2-A1IH-01A TCGA-E2-A1IH-01A-11D-A13J-01 ebd32da6-da68-4130-bd91-b15c230f5cdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A01_772082.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1IH TCGA-E2-A1IH-01A TCGA-E2-A1IH-01A-11D-A13J-01 ebd32da6-da68-4130-bd91-b15c230f5cdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A01_772082.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1IH TCGA-E2-A1IH-01A TCGA-E2-A1IH-01A-11D-A13J-01 ebd32da6-da68-4130-bd91-b15c230f5cdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A01_772082.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1IH TCGA-E2-A1IH-01A TCGA-E2-A1IH-01A-11D-A13J-01 ebd32da6-da68-4130-bd91-b15c230f5cdb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A01_772082.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-E2-A1IH TCGA-E2-A1IH-01A TCGA-E2-A1IH-01A-11D-A13K-05 493575ab-1cbb-4de6-b3e1-e64a737beac1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IH TCGA-E2-A1IH-01A TCGA-E2-A1IH-01A-11D-A13K-05 493575ab-1cbb-4de6-b3e1-e64a737beac1 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818132_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-E2-A1IH TCGA-E2-A1IH-01A TCGA-E2-A1IH-01A-11D-A13K-05 493575ab-1cbb-4de6-b3e1-e64a737beac1 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818132_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-E2-A1IH TCGA-E2-A1IH-01A TCGA-E2-A1IH-01A-11D-A13K-05 493575ab-1cbb-4de6-b3e1-e64a737beac1 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-E2-A1IH-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-E2-A1IH TCGA-E2-A1IH-01A TCGA-E2-A1IH-01A-11D-A13K-05 493575ab-1cbb-4de6-b3e1-e64a737beac1 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-E2-A1IH-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-E2-A1IH TCGA-E2-A1IH-01A TCGA-E2-A1IH-01A-11D-A13L-09 9537f03c-bd53-4252-ba4c-1b4a0ac1a177 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IH TCGA-E2-A1IH-01A TCGA-E2-A1IH-01A-11D-A188-09 cd886e35-4201-4732-90c6-142d8fe309b1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IH TCGA-E2-A1IH-01A TCGA-E2-A1IH-01A-11R-A13P-13 5f01522e-fa56-4d6d-b300-cbfcc92eb772 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IH TCGA-E2-A1IH-01A TCGA-E2-A1IH-01A-11R-A13P-13 5f01522e-fa56-4d6d-b300-cbfcc92eb772 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1IH-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1IH TCGA-E2-A1IH-01A TCGA-E2-A1IH-01A-11R-A13P-13 5f01522e-fa56-4d6d-b300-cbfcc92eb772 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1IH-01A-11R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1IH TCGA-E2-A1IH-01A TCGA-E2-A1IH-01A-11R-A13Q-07 2d06908f-3332-4b77-b88c-145dc5c4828f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IH TCGA-E2-A1IH-01A TCGA-E2-A1IH-01A-11R-A13Q-07 2d06908f-3332-4b77-b88c-145dc5c4828f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_400115.TCGA-E2-A1IH-01A-11R-A13Q-07.110802_UNC16-SN851_0066_AB09M4ABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1IH TCGA-E2-A1IH-01A TCGA-E2-A1IH-01A-11R-A13Q-07 2d06908f-3332-4b77-b88c-145dc5c4828f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_400219.TCGA-E2-A1IH-01A-11R-A13Q-07.110802_UNC16-SN851_0066_AB09M4ABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1IH TCGA-E2-A1IH-01A TCGA-E2-A1IH-01A-11R-A13Q-07 2d06908f-3332-4b77-b88c-145dc5c4828f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_400366.TCGA-E2-A1IH-01A-11R-A13Q-07.110802_UNC16-SN851_0066_AB09M4ABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1IH TCGA-E2-A1IH-01A TCGA-E2-A1IH-01A-11W-A14Q-09 ad4e6c15-e56f-470f-bde5-23e9fae4a5bc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IH TCGA-E2-A1IH-10A TCGA-E2-A1IH-10A-01D-A13M-02 62e3745e-7e21-4c3b-888c-7ad1212b48f0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IH TCGA-E2-A1IH-10A TCGA-E2-A1IH-10A-01D-A13N-01 d392c896-dfab-4ff0-a114-8677e982d1de Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IH TCGA-E2-A1IH-10A TCGA-E2-A1IH-10A-01D-A13N-01 d392c896-dfab-4ff0-a114-8677e982d1de SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E09_772126.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-E2-A1IH TCGA-E2-A1IH-10A TCGA-E2-A1IH-10A-01D-A13N-01 d392c896-dfab-4ff0-a114-8677e982d1de SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E09_772126.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1IH TCGA-E2-A1IH-10A TCGA-E2-A1IH-10A-01D-A13N-01 d392c896-dfab-4ff0-a114-8677e982d1de SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E09_772126.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1IH TCGA-E2-A1IH-10A TCGA-E2-A1IH-10A-01D-A13N-01 d392c896-dfab-4ff0-a114-8677e982d1de SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E09_772126.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1IH TCGA-E2-A1IH-10A TCGA-E2-A1IH-10A-01D-A13N-01 d392c896-dfab-4ff0-a114-8677e982d1de SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E09_772126.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1IH TCGA-E2-A1IH-10A TCGA-E2-A1IH-10A-01D-A13N-01 d392c896-dfab-4ff0-a114-8677e982d1de SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E09_772126.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1IH TCGA-E2-A1IH-10A TCGA-E2-A1IH-10A-01D-A13N-01 d392c896-dfab-4ff0-a114-8677e982d1de SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E09_772126.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1IH TCGA-E2-A1IH-10A TCGA-E2-A1IH-10A-01D-A13N-01 d392c896-dfab-4ff0-a114-8677e982d1de SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E09_772126.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-E2-A1IH TCGA-E2-A1IH-10A TCGA-E2-A1IH-10A-01D-A13O-09 cb1773b7-2caf-4e7f-8dd8-ef6b62fbca62 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IH TCGA-E2-A1IH-10A TCGA-E2-A1IH-10A-01W-A14R-09 a9fb972d-b8a1-4509-9e44-87fe4ad43a5a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1II TCGA-E2-A1II-01A TCGA-E2-A1II-01A-11D-A140-02 b53b097f-d063-4849-ac0f-9b1ca589eae9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1II.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1II TCGA-E2-A1II-01A TCGA-E2-A1II-01A-11D-A141-01 bb949708-34dc-48db-94db-c438ce611f57 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1II.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1II TCGA-E2-A1II-01A TCGA-E2-A1II-01A-11D-A141-01 bb949708-34dc-48db-94db-c438ce611f57 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A04_777990.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-E2-A1II TCGA-E2-A1II-01A TCGA-E2-A1II-01A-11D-A141-01 bb949708-34dc-48db-94db-c438ce611f57 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A04_777990.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1II TCGA-E2-A1II-01A TCGA-E2-A1II-01A-11D-A141-01 bb949708-34dc-48db-94db-c438ce611f57 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A04_777990.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1II TCGA-E2-A1II-01A TCGA-E2-A1II-01A-11D-A141-01 bb949708-34dc-48db-94db-c438ce611f57 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A04_777990.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1II TCGA-E2-A1II-01A TCGA-E2-A1II-01A-11D-A141-01 bb949708-34dc-48db-94db-c438ce611f57 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A04_777990.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1II TCGA-E2-A1II-01A TCGA-E2-A1II-01A-11D-A141-01 bb949708-34dc-48db-94db-c438ce611f57 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A04_777990.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1II TCGA-E2-A1II-01A TCGA-E2-A1II-01A-11D-A141-01 bb949708-34dc-48db-94db-c438ce611f57 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A04_777990.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1II TCGA-E2-A1II-01A TCGA-E2-A1II-01A-11D-A141-01 bb949708-34dc-48db-94db-c438ce611f57 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A04_777990.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-E2-A1II TCGA-E2-A1II-01A TCGA-E2-A1II-01A-11D-A142-09 698c8a73-c6b6-45bd-82fc-9bd0f140729d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1II.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1II TCGA-E2-A1II-01A TCGA-E2-A1II-01A-11D-A145-05 058ef23d-aa3d-4338-a545-8aaa69953e0d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1II.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1II TCGA-E2-A1II-01A TCGA-E2-A1II-01A-11D-A145-05 058ef23d-aa3d-4338-a545-8aaa69953e0d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818122_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-E2-A1II TCGA-E2-A1II-01A TCGA-E2-A1II-01A-11D-A145-05 058ef23d-aa3d-4338-a545-8aaa69953e0d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818122_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-E2-A1II TCGA-E2-A1II-01A TCGA-E2-A1II-01A-11D-A145-05 058ef23d-aa3d-4338-a545-8aaa69953e0d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-E2-A1II-01A-11D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-E2-A1II TCGA-E2-A1II-01A TCGA-E2-A1II-01A-11D-A145-05 058ef23d-aa3d-4338-a545-8aaa69953e0d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-E2-A1II-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-E2-A1II TCGA-E2-A1II-01A TCGA-E2-A1II-01A-11R-A143-13 59da615e-e555-4829-b63e-79045c728c68 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1II.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1II TCGA-E2-A1II-01A TCGA-E2-A1II-01A-11R-A143-13 59da615e-e555-4829-b63e-79045c728c68 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1II-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1II TCGA-E2-A1II-01A TCGA-E2-A1II-01A-11R-A143-13 59da615e-e555-4829-b63e-79045c728c68 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1II-01A-11R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1II TCGA-E2-A1II-01A TCGA-E2-A1II-01A-11R-A144-07 f7a5cfcb-623c-4858-ba32-e6ca63c75d2a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1II.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1II TCGA-E2-A1II-01A TCGA-E2-A1II-01A-11R-A144-07 f7a5cfcb-623c-4858-ba32-e6ca63c75d2a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_845916.TCGA-E2-A1II-01A-11R-A144-07.110803_UNC15-SN850_0106_BD0DK2ABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1II TCGA-E2-A1II-01A TCGA-E2-A1II-01A-11R-A144-07 f7a5cfcb-623c-4858-ba32-e6ca63c75d2a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_845925.TCGA-E2-A1II-01A-11R-A144-07.110803_UNC15-SN850_0106_BD0DK2ABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1II TCGA-E2-A1II-01A TCGA-E2-A1II-01A-11R-A144-07 f7a5cfcb-623c-4858-ba32-e6ca63c75d2a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_845966.TCGA-E2-A1II-01A-11R-A144-07.110803_UNC15-SN850_0106_BD0DK2ABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1II TCGA-E2-A1II-01A TCGA-E2-A1II-01A-11W-A187-09 23e3660c-754e-437e-88b0-99a28fd6e0c6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1II.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1II TCGA-E2-A1II-10A TCGA-E2-A1II-10A-01D-A140-02 abed5b77-b6b6-438e-9ac1-e580aaeb21c3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1II.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1II TCGA-E2-A1II-10A TCGA-E2-A1II-10A-01D-A141-01 2163923d-41d0-4e87-b1a5-ebdec02678fc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1II.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1II TCGA-E2-A1II-10A TCGA-E2-A1II-10A-01D-A141-01 2163923d-41d0-4e87-b1a5-ebdec02678fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F10_778066.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-E2-A1II TCGA-E2-A1II-10A TCGA-E2-A1II-10A-01D-A141-01 2163923d-41d0-4e87-b1a5-ebdec02678fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F10_778066.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1II TCGA-E2-A1II-10A TCGA-E2-A1II-10A-01D-A141-01 2163923d-41d0-4e87-b1a5-ebdec02678fc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F10_778066.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1II TCGA-E2-A1II-10A TCGA-E2-A1II-10A-01D-A141-01 2163923d-41d0-4e87-b1a5-ebdec02678fc SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-E2-A1II-11A-21D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-E2-A1II TCGA-E2-A1II-11A TCGA-E2-A1II-11A-21D-A145-05 965a33a9-3ccf-4fb7-b04d-09ce4ed7d4ca DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-E2-A1II-11A-21D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-E2-A1IJ TCGA-E2-A1IJ-01A TCGA-E2-A1IJ-01A-11D-A140-02 eef67adf-4687-486b-9588-f356882da933 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IJ TCGA-E2-A1IJ-01A TCGA-E2-A1IJ-01A-11D-A141-01 ccbdba80-fcd1-44ca-9265-4f0c5818dd60 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IJ TCGA-E2-A1IJ-01A TCGA-E2-A1IJ-01A-11D-A141-01 ccbdba80-fcd1-44ca-9265-4f0c5818dd60 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A06_778146.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-E2-A1IJ TCGA-E2-A1IJ-01A TCGA-E2-A1IJ-01A-11D-A141-01 ccbdba80-fcd1-44ca-9265-4f0c5818dd60 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A06_778146.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IJ TCGA-E2-A1IJ-01A TCGA-E2-A1IJ-01A-11D-A141-01 ccbdba80-fcd1-44ca-9265-4f0c5818dd60 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-E2-A1IJ-01A-11D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-E2-A1IJ TCGA-E2-A1IJ-01A TCGA-E2-A1IJ-01A-11D-A145-05 feb77d0e-14e4-4532-995c-594ebfa5d393 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-E2-A1IJ-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-E2-A1IJ TCGA-E2-A1IJ-01A TCGA-E2-A1IJ-01A-11R-A143-13 909bfdf7-50f9-404a-9df2-4722f72f8190 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IJ TCGA-E2-A1IJ-01A TCGA-E2-A1IJ-01A-11R-A143-13 909bfdf7-50f9-404a-9df2-4722f72f8190 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1IJ-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1IJ TCGA-E2-A1IJ-01A TCGA-E2-A1IJ-01A-11R-A143-13 909bfdf7-50f9-404a-9df2-4722f72f8190 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IJ TCGA-E2-A1IJ-10A TCGA-E2-A1IJ-10A-01D-A141-01 b121355d-e262-4b07-9747-78f54222ea18 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IJ TCGA-E2-A1IJ-10A TCGA-E2-A1IJ-10A-01D-A141-01 b121355d-e262-4b07-9747-78f54222ea18 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E10_778120.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IJ TCGA-E2-A1IJ-10A TCGA-E2-A1IJ-10A-01D-A141-01 b121355d-e262-4b07-9747-78f54222ea18 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E10_778120.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IJ TCGA-E2-A1IJ-10A TCGA-E2-A1IJ-10A-01D-A141-01 b121355d-e262-4b07-9747-78f54222ea18 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E10_778120.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IJ TCGA-E2-A1IJ-10A TCGA-E2-A1IJ-10A-01D-A141-01 b121355d-e262-4b07-9747-78f54222ea18 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E10_778120.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-E2-A1IJ TCGA-E2-A1IJ-10A TCGA-E2-A1IJ-10A-01D-A142-09 62243d12-b286-4315-b6da-71ef06c668c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IJ TCGA-E2-A1IJ-10A TCGA-E2-A1IJ-10A-01W-A187-09 e0eae4c6-fffc-44fe-a76a-050b6302ebbf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IJ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IK TCGA-E2-A1IK-01A TCGA-E2-A1IK-01A-11D-A140-02 8dc05e96-632c-42be-8c38-f42778bfbc18 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IK TCGA-E2-A1IK-01A TCGA-E2-A1IK-01A-11D-A141-01 41e6ce80-5607-4d63-aba4-fdf657eb0227 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IK TCGA-E2-A1IK-01A TCGA-E2-A1IK-01A-11D-A141-01 41e6ce80-5607-4d63-aba4-fdf657eb0227 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A10_778126.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-E2-A1IK TCGA-E2-A1IK-01A TCGA-E2-A1IK-01A-11D-A141-01 41e6ce80-5607-4d63-aba4-fdf657eb0227 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A10_778126.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IK TCGA-E2-A1IK-01A TCGA-E2-A1IK-01A-11D-A141-01 41e6ce80-5607-4d63-aba4-fdf657eb0227 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IK TCGA-E2-A1IK-01A TCGA-E2-A1IK-01A-11D-A145-05 fe475ae7-e7a6-4e64-908e-d7df99e6549f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IK TCGA-E2-A1IK-01A TCGA-E2-A1IK-01A-11D-A145-05 fe475ae7-e7a6-4e64-908e-d7df99e6549f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818122_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-E2-A1IK TCGA-E2-A1IK-01A TCGA-E2-A1IK-01A-11D-A145-05 fe475ae7-e7a6-4e64-908e-d7df99e6549f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818122_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-E2-A1IK TCGA-E2-A1IK-01A TCGA-E2-A1IK-01A-11D-A145-05 fe475ae7-e7a6-4e64-908e-d7df99e6549f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-E2-A1IK-01A-11D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-E2-A1IK TCGA-E2-A1IK-01A TCGA-E2-A1IK-01A-11D-A145-05 fe475ae7-e7a6-4e64-908e-d7df99e6549f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-E2-A1IK-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-E2-A1IK TCGA-E2-A1IK-01A TCGA-E2-A1IK-01A-11D-A17G-09 8577ac01-1274-4bd5-ab04-380eaa78d95b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IK TCGA-E2-A1IK-01A TCGA-E2-A1IK-01A-11R-A143-13 17a9f60d-9635-4c90-968c-75aad3ed098b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IK TCGA-E2-A1IK-01A TCGA-E2-A1IK-01A-11R-A143-13 17a9f60d-9635-4c90-968c-75aad3ed098b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1IK-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1IK TCGA-E2-A1IK-01A TCGA-E2-A1IK-01A-11R-A143-13 17a9f60d-9635-4c90-968c-75aad3ed098b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1IK-01A-11R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1IK TCGA-E2-A1IK-01A TCGA-E2-A1IK-01A-11R-A144-07 96a11934-f6cd-4892-a808-672433f84429 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IK TCGA-E2-A1IK-01A TCGA-E2-A1IK-01A-11R-A144-07 96a11934-f6cd-4892-a808-672433f84429 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_846345.TCGA-E2-A1IK-01A-11R-A144-07.110803_UNC15-SN850_0106_BD0DK2ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1IK TCGA-E2-A1IK-01A TCGA-E2-A1IK-01A-11R-A144-07 96a11934-f6cd-4892-a808-672433f84429 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_846388.TCGA-E2-A1IK-01A-11R-A144-07.110803_UNC15-SN850_0106_BD0DK2ABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1IK TCGA-E2-A1IK-01A TCGA-E2-A1IK-01A-11R-A144-07 96a11934-f6cd-4892-a808-672433f84429 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_846439.TCGA-E2-A1IK-01A-11R-A144-07.110803_UNC15-SN850_0106_BD0DK2ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1IK TCGA-E2-A1IK-01A TCGA-E2-A1IK-01A-11W-A185-09 afca7421-3b58-4e12-93a9-cc8a099f4f6b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IK TCGA-E2-A1IK-01A TCGA-E2-A1IK-01A-11W-A187-09 e5b388fe-5d20-4825-bcbd-fc5d605939a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IK TCGA-E2-A1IK-10A TCGA-E2-A1IK-10A-01D-A140-02 e86e4c85-7ec3-4d72-913f-af93ba2f6b1b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IK TCGA-E2-A1IK-10A TCGA-E2-A1IK-10A-01D-A141-01 054809ce-1df8-4ac1-8337-33c6bcb2c0bc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IK TCGA-E2-A1IK-10A TCGA-E2-A1IK-10A-01D-A141-01 054809ce-1df8-4ac1-8337-33c6bcb2c0bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G04_778036.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-E2-A1IK TCGA-E2-A1IK-10A TCGA-E2-A1IK-10A-01D-A141-01 054809ce-1df8-4ac1-8337-33c6bcb2c0bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G04_778036.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IK TCGA-E2-A1IK-10A TCGA-E2-A1IK-10A-01D-A141-01 054809ce-1df8-4ac1-8337-33c6bcb2c0bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G04_778036.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IK TCGA-E2-A1IK-10A TCGA-E2-A1IK-10A-01D-A141-01 054809ce-1df8-4ac1-8337-33c6bcb2c0bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G04_778036.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IK TCGA-E2-A1IK-10A TCGA-E2-A1IK-10A-01D-A141-01 054809ce-1df8-4ac1-8337-33c6bcb2c0bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G04_778036.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IK TCGA-E2-A1IK-10A TCGA-E2-A1IK-10A-01D-A141-01 054809ce-1df8-4ac1-8337-33c6bcb2c0bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G04_778036.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IK TCGA-E2-A1IK-10A TCGA-E2-A1IK-10A-01D-A141-01 054809ce-1df8-4ac1-8337-33c6bcb2c0bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G04_778036.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IK TCGA-E2-A1IK-10A TCGA-E2-A1IK-10A-01D-A141-01 054809ce-1df8-4ac1-8337-33c6bcb2c0bc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G04_778036.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-E2-A1IK TCGA-E2-A1IK-10A TCGA-E2-A1IK-10A-01D-A142-09 867338db-8269-4f32-b4f2-1c4b9d2566f2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IK TCGA-E2-A1IK-10A TCGA-E2-A1IK-10A-01W-A185-09 66daf209-baa1-4732-8964-9d5cb148166e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IK TCGA-E2-A1IK-10A TCGA-E2-A1IK-10A-01W-A187-09 9673c6f0-7179-4074-b77b-3f74da3de59d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IL TCGA-E2-A1IL-01A TCGA-E2-A1IL-01A-11D-A14E-02 1050ac6e-b709-4449-9d95-9a62153a0797 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1IL TCGA-E2-A1IL-01A TCGA-E2-A1IL-01A-11D-A14F-01 efbd26b2-9623-45f3-a4c6-aea7266bb688 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1IL TCGA-E2-A1IL-01A TCGA-E2-A1IL-01A-11D-A14F-01 efbd26b2-9623-45f3-a4c6-aea7266bb688 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G04_777760.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0 120 07-DEC-11 11.18.53.710000000 AM TCGA-E2-A1IL TCGA-E2-A1IL-01A TCGA-E2-A1IL-01A-11D-A14F-01 efbd26b2-9623-45f3-a4c6-aea7266bb688 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G04_777760.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E2-A1IL TCGA-E2-A1IL-01A TCGA-E2-A1IL-01A-11D-A14F-01 efbd26b2-9623-45f3-a4c6-aea7266bb688 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G04_777760.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E2-A1IL TCGA-E2-A1IL-01A TCGA-E2-A1IL-01A-11D-A14F-01 efbd26b2-9623-45f3-a4c6-aea7266bb688 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G04_777760.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E2-A1IL TCGA-E2-A1IL-01A TCGA-E2-A1IL-01A-11D-A14F-01 efbd26b2-9623-45f3-a4c6-aea7266bb688 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G04_777760.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E2-A1IL TCGA-E2-A1IL-01A TCGA-E2-A1IL-01A-11D-A14F-01 efbd26b2-9623-45f3-a4c6-aea7266bb688 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G04_777760.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E2-A1IL TCGA-E2-A1IL-01A TCGA-E2-A1IL-01A-11D-A14F-01 efbd26b2-9623-45f3-a4c6-aea7266bb688 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G04_777760.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E2-A1IL TCGA-E2-A1IL-01A TCGA-E2-A1IL-01A-11D-A14F-01 efbd26b2-9623-45f3-a4c6-aea7266bb688 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1IL TCGA-E2-A1IL-10A TCGA-E2-A1IL-10A-01D-A14F-01 2982d7ef-2692-4c0d-bb90-17970ea21af2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E05_777624.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0 120 07-DEC-11 11.18.53.710000000 AM TCGA-E2-A1IL TCGA-E2-A1IL-10A TCGA-E2-A1IL-10A-01D-A14F-01 2982d7ef-2692-4c0d-bb90-17970ea21af2 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IN TCGA-E2-A1IN-01A TCGA-E2-A1IN-01A-11D-A13J-01 08e895e6-2f45-436c-9b33-9768b66dc33b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B10_772128.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-E2-A1IN TCGA-E2-A1IN-01A TCGA-E2-A1IN-01A-11D-A13J-01 08e895e6-2f45-436c-9b33-9768b66dc33b SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B10_772128.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-E2-A1IN TCGA-E2-A1IN-01A TCGA-E2-A1IN-01A-11D-A13K-05 54d35380-df09-40ad-8664-94d1d21c7243 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IN TCGA-E2-A1IN-01A TCGA-E2-A1IN-01A-11D-A13K-05 54d35380-df09-40ad-8664-94d1d21c7243 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-E2-A1IN-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-E2-A1IN TCGA-E2-A1IN-01A TCGA-E2-A1IN-01A-11D-A13K-05 54d35380-df09-40ad-8664-94d1d21c7243 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-E2-A1IN-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-E2-A1IN TCGA-E2-A1IN-01A TCGA-E2-A1IN-01A-11D-A13L-09 9e85559f-098e-4b0f-8034-4798789e710b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IN TCGA-E2-A1IN-01A TCGA-E2-A1IN-01A-11R-A13P-13 b5ff133f-bd56-49ff-ab70-d3bb6b2b3f66 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IN TCGA-E2-A1IN-01A TCGA-E2-A1IN-01A-11R-A13P-13 b5ff133f-bd56-49ff-ab70-d3bb6b2b3f66 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1IN-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1IN TCGA-E2-A1IN-01A TCGA-E2-A1IN-01A-11R-A13P-13 b5ff133f-bd56-49ff-ab70-d3bb6b2b3f66 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1IN-01A-11R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1IN TCGA-E2-A1IN-01A TCGA-E2-A1IN-01A-11R-A13Q-07 dde1d3ab-ad71-4526-bc98-058b6049edcf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IN TCGA-E2-A1IN-01A TCGA-E2-A1IN-01A-11R-A13Q-07 dde1d3ab-ad71-4526-bc98-058b6049edcf RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_402082.TCGA-E2-A1IN-01A-11R-A13Q-07.110729_UNC15-SN850_0101_AD0DW6ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1IN TCGA-E2-A1IN-01A TCGA-E2-A1IN-01A-11R-A13Q-07 dde1d3ab-ad71-4526-bc98-058b6049edcf RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_402218.TCGA-E2-A1IN-01A-11R-A13Q-07.110729_UNC15-SN850_0101_AD0DW6ABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1IN TCGA-E2-A1IN-01A TCGA-E2-A1IN-01A-11R-A13Q-07 dde1d3ab-ad71-4526-bc98-058b6049edcf RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_402290.TCGA-E2-A1IN-01A-11R-A13Q-07.110729_UNC15-SN850_0101_AD0DW6ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1IN TCGA-E2-A1IN-01A TCGA-E2-A1IN-01A-11W-A14Q-09 b93fce8a-7197-420b-bb89-d289a7d147e1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IN TCGA-E2-A1IN-10A TCGA-E2-A1IN-10A-01D-A13M-02 ce123bb2-76b5-4230-8ebf-299d5076a66d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IN TCGA-E2-A1IN-10A TCGA-E2-A1IN-10A-01D-A13N-01 b358eb25-7a0b-4f76-8c9d-fa19b7712274 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IN TCGA-E2-A1IN-10A TCGA-E2-A1IN-10A-01D-A13N-01 b358eb25-7a0b-4f76-8c9d-fa19b7712274 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E12_772100.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-E2-A1IN TCGA-E2-A1IN-10A TCGA-E2-A1IN-10A-01D-A13N-01 b358eb25-7a0b-4f76-8c9d-fa19b7712274 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E12_772100.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1IN TCGA-E2-A1IN-10A TCGA-E2-A1IN-10A-01D-A13N-01 b358eb25-7a0b-4f76-8c9d-fa19b7712274 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E12_772100.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1IN TCGA-E2-A1IN-10A TCGA-E2-A1IN-10A-01D-A13N-01 b358eb25-7a0b-4f76-8c9d-fa19b7712274 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E12_772100.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-E2-A1IN TCGA-E2-A1IN-10A TCGA-E2-A1IN-10A-01D-A13O-09 f89f9a46-1337-4e68-aae1-6f415836de9f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IN TCGA-E2-A1IN-10A TCGA-E2-A1IN-10A-01D-A188-09 8dd6fca4-007f-45de-a569-bfb899254977 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IN TCGA-E2-A1IN-10A TCGA-E2-A1IN-10A-01W-A14R-09 97e7fd3a-b059-42b1-bce4-087c71f64d9c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IN.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-01A TCGA-E2-A1IO-01A-11D-A140-02 a103f9ad-afa1-4549-9520-7ca5d1cfd41e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-01A TCGA-E2-A1IO-01A-11D-A141-01 1123e3e5-8125-432d-9246-195e8114be97 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-01A TCGA-E2-A1IO-01A-11D-A141-01 1123e3e5-8125-432d-9246-195e8114be97 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G05_778022.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-E2-A1IO TCGA-E2-A1IO-01A TCGA-E2-A1IO-01A-11D-A141-01 1123e3e5-8125-432d-9246-195e8114be97 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G05_778022.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IO TCGA-E2-A1IO-01A TCGA-E2-A1IO-01A-11D-A141-01 1123e3e5-8125-432d-9246-195e8114be97 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G05_778022.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IO TCGA-E2-A1IO-01A TCGA-E2-A1IO-01A-11D-A141-01 1123e3e5-8125-432d-9246-195e8114be97 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G05_778022.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IO TCGA-E2-A1IO-01A TCGA-E2-A1IO-01A-11D-A141-01 1123e3e5-8125-432d-9246-195e8114be97 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G05_778022.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IO TCGA-E2-A1IO-01A TCGA-E2-A1IO-01A-11D-A141-01 1123e3e5-8125-432d-9246-195e8114be97 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G05_778022.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IO TCGA-E2-A1IO-01A TCGA-E2-A1IO-01A-11D-A141-01 1123e3e5-8125-432d-9246-195e8114be97 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G05_778022.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IO TCGA-E2-A1IO-01A TCGA-E2-A1IO-01A-11D-A141-01 1123e3e5-8125-432d-9246-195e8114be97 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G05_778022.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-01A TCGA-E2-A1IO-01A-11D-A142-09 986e9b9f-ae15-4743-a150-d6ee11f3c077 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-01A TCGA-E2-A1IO-01A-11D-A145-05 b450cbd6-31f2-4246-8df2-6217a2b0fee9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-01A TCGA-E2-A1IO-01A-11D-A145-05 b450cbd6-31f2-4246-8df2-6217a2b0fee9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818102_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-01A TCGA-E2-A1IO-01A-11D-A145-05 b450cbd6-31f2-4246-8df2-6217a2b0fee9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818102_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-01A TCGA-E2-A1IO-01A-11D-A145-05 b450cbd6-31f2-4246-8df2-6217a2b0fee9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-E2-A1IO-01A-11D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-01A TCGA-E2-A1IO-01A-11D-A145-05 b450cbd6-31f2-4246-8df2-6217a2b0fee9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-E2-A1IO-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-01A TCGA-E2-A1IO-01A-11R-A143-13 953dc19e-5f23-4372-a769-7ca0198ac799 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-01A TCGA-E2-A1IO-01A-11R-A143-13 953dc19e-5f23-4372-a769-7ca0198ac799 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1IO-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-01A TCGA-E2-A1IO-01A-11R-A143-13 953dc19e-5f23-4372-a769-7ca0198ac799 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1IO-01A-11R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-01A TCGA-E2-A1IO-01A-11R-A144-07 72611671-51cc-4662-b992-6701eb1df987 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-01A TCGA-E2-A1IO-01A-11R-A144-07 72611671-51cc-4662-b992-6701eb1df987 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451843.TCGA-E2-A1IO-01A-11R-A144-07.110801_UNC12-SN629_0114_AC04B7ABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-01A TCGA-E2-A1IO-01A-11R-A144-07 72611671-51cc-4662-b992-6701eb1df987 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451851.TCGA-E2-A1IO-01A-11R-A144-07.110801_UNC12-SN629_0114_AC04B7ABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-01A TCGA-E2-A1IO-01A-11R-A144-07 72611671-51cc-4662-b992-6701eb1df987 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451878.TCGA-E2-A1IO-01A-11R-A144-07.110801_UNC12-SN629_0114_AC04B7ABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-01A TCGA-E2-A1IO-01A-11W-A187-09 05789ed4-1643-4a07-a7c9-10aadf611777 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-10A TCGA-E2-A1IO-10A-01D-A140-02 775f335d-1249-4da4-87db-b6eaf89ae2f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-10A TCGA-E2-A1IO-10A-01D-A141-01 4a7e5410-0f68-49d3-ae1c-ea531edc7e06 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-10A TCGA-E2-A1IO-10A-01D-A141-01 4a7e5410-0f68-49d3-ae1c-ea531edc7e06 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C11_777986.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-E2-A1IO TCGA-E2-A1IO-10A TCGA-E2-A1IO-10A-01D-A141-01 4a7e5410-0f68-49d3-ae1c-ea531edc7e06 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C11_777986.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IO TCGA-E2-A1IO-10A TCGA-E2-A1IO-10A-01D-A141-01 4a7e5410-0f68-49d3-ae1c-ea531edc7e06 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C11_777986.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IO TCGA-E2-A1IO-10A TCGA-E2-A1IO-10A-01D-A141-01 4a7e5410-0f68-49d3-ae1c-ea531edc7e06 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C11_777986.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IO TCGA-E2-A1IO-10A TCGA-E2-A1IO-10A-01D-A141-01 4a7e5410-0f68-49d3-ae1c-ea531edc7e06 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C11_777986.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IO TCGA-E2-A1IO-10A TCGA-E2-A1IO-10A-01D-A141-01 4a7e5410-0f68-49d3-ae1c-ea531edc7e06 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C11_777986.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IO TCGA-E2-A1IO-10A TCGA-E2-A1IO-10A-01D-A141-01 4a7e5410-0f68-49d3-ae1c-ea531edc7e06 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C11_777986.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1IO TCGA-E2-A1IO-10A TCGA-E2-A1IO-10A-01D-A141-01 4a7e5410-0f68-49d3-ae1c-ea531edc7e06 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C11_777986.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-10A TCGA-E2-A1IO-10A-01D-A142-09 f06efd07-1873-4b4b-b323-9a39e0081241 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-10A TCGA-E2-A1IO-10A-01W-A187-09 22c959b8-a605-4e0a-afdb-ca77e3d8f0e9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-11A TCGA-E2-A1IO-11A-21D-A145-05 ccdc4984-4d24-440d-9140-c551449f4942 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IO.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-11A TCGA-E2-A1IO-11A-21D-A145-05 ccdc4984-4d24-440d-9140-c551449f4942 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818055_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-11A TCGA-E2-A1IO-11A-21D-A145-05 ccdc4984-4d24-440d-9140-c551449f4942 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818055_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-11A TCGA-E2-A1IO-11A-21D-A145-05 ccdc4984-4d24-440d-9140-c551449f4942 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-E2-A1IO-11A-21D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-E2-A1IO TCGA-E2-A1IO-11A TCGA-E2-A1IO-11A-21D-A145-05 ccdc4984-4d24-440d-9140-c551449f4942 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-E2-A1IO-11A-21D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-E2-A1IP TCGA-E2-A1IP-01A TCGA-E2-A1IP-01A-11D-A14E-02 f79b9900-4c9d-4ab0-95ab-d0dd67790ce1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-01A TCGA-E2-A1IP-01A-11D-A14F-01 2d0dc4e5-c1ad-4f80-b428-0b164d2803fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-01A TCGA-E2-A1IP-01A-11D-A14F-01 2d0dc4e5-c1ad-4f80-b428-0b164d2803fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G06_777748.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0 120 07-DEC-11 11.18.53.710000000 AM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-01A TCGA-E2-A1IP-01A-11D-A14F-01 2d0dc4e5-c1ad-4f80-b428-0b164d2803fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G06_777748.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-01A TCGA-E2-A1IP-01A-11D-A14F-01 2d0dc4e5-c1ad-4f80-b428-0b164d2803fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G06_777748.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-01A TCGA-E2-A1IP-01A-11D-A14F-01 2d0dc4e5-c1ad-4f80-b428-0b164d2803fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G06_777748.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-01A TCGA-E2-A1IP-01A-11D-A14F-01 2d0dc4e5-c1ad-4f80-b428-0b164d2803fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G06_777748.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-01A TCGA-E2-A1IP-01A-11D-A14F-01 2d0dc4e5-c1ad-4f80-b428-0b164d2803fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G06_777748.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-01A TCGA-E2-A1IP-01A-11D-A14F-01 2d0dc4e5-c1ad-4f80-b428-0b164d2803fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G06_777748.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-01A TCGA-E2-A1IP-01A-11D-A14F-01 2d0dc4e5-c1ad-4f80-b428-0b164d2803fd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G06_777748.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0 120 07-DEC-11 01.00.01.357000000 PM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-01A TCGA-E2-A1IP-01A-11D-A14G-09 fc18f08c-ec87-4b92-ac85-b26c0ff03174 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-01A TCGA-E2-A1IP-01A-11D-A14H-05 ba0efe39-0aff-41a7-b9b8-08388220f976 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-01A TCGA-E2-A1IP-01A-11D-A14H-05 ba0efe39-0aff-41a7-b9b8-08388220f976 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0/6057833134_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0 120 07-NOV-11 04.10.35.826000000 PM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-01A TCGA-E2-A1IP-01A-11D-A14H-05 ba0efe39-0aff-41a7-b9b8-08388220f976 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0/6057833134_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0 120 07-NOV-11 04.10.35.826000000 PM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-01A TCGA-E2-A1IP-01A-11D-A14H-05 ba0efe39-0aff-41a7-b9b8-08388220f976 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.11.1.0/jhu-usc.edu_BRCA.HumanMethylation450.11.lvl-2.TCGA-E2-A1IP-01A-11D-A14H-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.11.1.0 120 07-NOV-11 04.58.54.079000000 PM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-01A TCGA-E2-A1IP-01A-11D-A14H-05 ba0efe39-0aff-41a7-b9b8-08388220f976 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.11.1.0/jhu-usc.edu_BRCA.HumanMethylation450.11.lvl-3.TCGA-E2-A1IP-01A-11D-A14H-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.11.1.0 120 07-NOV-11 05.34.44.798000000 PM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-01A TCGA-E2-A1IP-01A-11R-A14C-13 a974307b-96cb-4945-b788-66ac26201f0b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-01A TCGA-E2-A1IP-01A-11R-A14C-13 a974307b-96cb-4945-b788-66ac26201f0b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1IP-01A-11R-A14C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 120 31-OCT-11 10.17.59.939000000 PM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-01A TCGA-E2-A1IP-01A-11R-A14C-13 a974307b-96cb-4945-b788-66ac26201f0b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1IP-01A-11R-A14C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 120 31-OCT-11 10.17.59.939000000 PM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-01A TCGA-E2-A1IP-01A-11R-A14D-07 dfd81aa5-5be4-4cf3-877f-0f52e01beb60 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-01A TCGA-E2-A1IP-01A-11R-A14D-07 dfd81aa5-5be4-4cf3-877f-0f52e01beb60 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_840047.TCGA-E2-A1IP-01A-11R-A14D-07.110809_UNC9-SN296_0227_AC0437ABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 120 09-FEB-12 06.18.17.220000000 PM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-01A TCGA-E2-A1IP-01A-11R-A14D-07 dfd81aa5-5be4-4cf3-877f-0f52e01beb60 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_840049.TCGA-E2-A1IP-01A-11R-A14D-07.110809_UNC9-SN296_0227_AC0437ABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 120 09-FEB-12 06.18.17.220000000 PM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-01A TCGA-E2-A1IP-01A-11R-A14D-07 dfd81aa5-5be4-4cf3-877f-0f52e01beb60 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_840220.TCGA-E2-A1IP-01A-11R-A14D-07.110809_UNC9-SN296_0227_AC0437ABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 120 09-FEB-12 06.18.17.220000000 PM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-10A TCGA-E2-A1IP-10A-01D-A14E-02 55d39496-65fe-4557-aadd-afcc9edbc9e3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-10A TCGA-E2-A1IP-10A-01D-A14F-01 383293e0-e863-4893-824a-f89b0b389542 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-10A TCGA-E2-A1IP-10A-01D-A14F-01 383293e0-e863-4893-824a-f89b0b389542 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G07_777714.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0 120 07-DEC-11 11.18.53.710000000 AM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-10A TCGA-E2-A1IP-10A-01D-A14F-01 383293e0-e863-4893-824a-f89b0b389542 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G07_777714.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-10A TCGA-E2-A1IP-10A-01D-A14F-01 383293e0-e863-4893-824a-f89b0b389542 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G07_777714.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-10A TCGA-E2-A1IP-10A-01D-A14F-01 383293e0-e863-4893-824a-f89b0b389542 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G07_777714.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-10A TCGA-E2-A1IP-10A-01D-A14F-01 383293e0-e863-4893-824a-f89b0b389542 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G07_777714.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-10A TCGA-E2-A1IP-10A-01D-A14F-01 383293e0-e863-4893-824a-f89b0b389542 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G07_777714.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-10A TCGA-E2-A1IP-10A-01D-A14F-01 383293e0-e863-4893-824a-f89b0b389542 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G07_777714.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-10A TCGA-E2-A1IP-10A-01D-A14F-01 383293e0-e863-4893-824a-f89b0b389542 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G07_777714.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0 120 07-DEC-11 01.00.01.357000000 PM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IP TCGA-E2-A1IP-10A TCGA-E2-A1IP-10A-01D-A14G-09 4e8cb264-696c-4dce-89c4-7a783451189b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IP.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM Redaction Genotype mismatch Tumor and normal do not match TCGA-E2-A1IU TCGA-E2-A1IU-01A TCGA-E2-A1IU-01A-11D-A14E-02 aa6390ba-ac10-480e-888e-da7005c9af1b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1IU TCGA-E2-A1IU-01A TCGA-E2-A1IU-01A-11D-A14F-01 34a6f1be-b1db-4659-b620-6e21e0f73b2b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1IU TCGA-E2-A1IU-01A TCGA-E2-A1IU-01A-11D-A14F-01 34a6f1be-b1db-4659-b620-6e21e0f73b2b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C06_777664.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0 120 07-DEC-11 11.18.53.710000000 AM TCGA-E2-A1IU TCGA-E2-A1IU-01A TCGA-E2-A1IU-01A-11D-A14F-01 34a6f1be-b1db-4659-b620-6e21e0f73b2b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C06_777664.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E2-A1IU TCGA-E2-A1IU-01A TCGA-E2-A1IU-01A-11D-A14F-01 34a6f1be-b1db-4659-b620-6e21e0f73b2b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C06_777664.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E2-A1IU TCGA-E2-A1IU-01A TCGA-E2-A1IU-01A-11D-A14F-01 34a6f1be-b1db-4659-b620-6e21e0f73b2b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C06_777664.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E2-A1IU TCGA-E2-A1IU-01A TCGA-E2-A1IU-01A-11D-A14F-01 34a6f1be-b1db-4659-b620-6e21e0f73b2b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C06_777664.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E2-A1IU TCGA-E2-A1IU-01A TCGA-E2-A1IU-01A-11D-A14F-01 34a6f1be-b1db-4659-b620-6e21e0f73b2b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C06_777664.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E2-A1IU TCGA-E2-A1IU-01A TCGA-E2-A1IU-01A-11D-A14F-01 34a6f1be-b1db-4659-b620-6e21e0f73b2b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C06_777664.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E2-A1IU TCGA-E2-A1IU-01A TCGA-E2-A1IU-01A-11D-A14F-01 34a6f1be-b1db-4659-b620-6e21e0f73b2b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C06_777664.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0 120 07-DEC-11 01.00.01.357000000 PM TCGA-E2-A1IU TCGA-E2-A1IU-01A TCGA-E2-A1IU-01A-11D-A14G-09 7fcd5fda-8155-4b48-afb9-9e7958627113 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1IU TCGA-E2-A1IU-01A TCGA-E2-A1IU-01A-11D-A14H-05 180ccad3-0279-4dea-a595-f154f85abea2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1IU TCGA-E2-A1IU-01A TCGA-E2-A1IU-01A-11D-A14H-05 180ccad3-0279-4dea-a595-f154f85abea2 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0/6057833101_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0 120 07-NOV-11 04.10.35.826000000 PM TCGA-E2-A1IU TCGA-E2-A1IU-01A TCGA-E2-A1IU-01A-11D-A14H-05 180ccad3-0279-4dea-a595-f154f85abea2 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0/6057833101_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0 120 07-NOV-11 04.10.35.826000000 PM TCGA-E2-A1IU TCGA-E2-A1IU-01A TCGA-E2-A1IU-01A-11D-A14H-05 180ccad3-0279-4dea-a595-f154f85abea2 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.11.1.0/jhu-usc.edu_BRCA.HumanMethylation450.11.lvl-2.TCGA-E2-A1IU-01A-11D-A14H-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.11.1.0 120 07-NOV-11 04.58.54.079000000 PM TCGA-E2-A1IU TCGA-E2-A1IU-01A TCGA-E2-A1IU-01A-11D-A14H-05 180ccad3-0279-4dea-a595-f154f85abea2 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.11.1.0/jhu-usc.edu_BRCA.HumanMethylation450.11.lvl-3.TCGA-E2-A1IU-01A-11D-A14H-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.11.1.0 120 07-NOV-11 05.34.44.798000000 PM TCGA-E2-A1IU TCGA-E2-A1IU-01A TCGA-E2-A1IU-01A-11R-A14C-13 ecfbd0ba-1833-44a6-bda3-8d441212e10d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1IU TCGA-E2-A1IU-01A TCGA-E2-A1IU-01A-11R-A14C-13 ecfbd0ba-1833-44a6-bda3-8d441212e10d miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1IU TCGA-E2-A1IU-11A TCGA-E2-A1IU-11A-61D-A14F-01 4b2073cb-62fe-41f3-baa1-200fc865871b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A08_777632.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0 120 07-DEC-11 11.18.53.710000000 AM TCGA-E2-A1IU TCGA-E2-A1IU-11A TCGA-E2-A1IU-11A-61D-A14F-01 4b2073cb-62fe-41f3-baa1-200fc865871b SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A08_777632.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0 120 07-DEC-11 01.00.01.357000000 PM TCGA-E2-A1IU TCGA-E2-A1IU-11A TCGA-E2-A1IU-11A-61D-A14G-09 48e5f4e0-7f51-47f6-a508-347ed3638a6d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1IU TCGA-E2-A1IU-11A TCGA-E2-A1IU-11A-61W-A16H-09 3cfebe2f-269d-4b0b-926a-32e417edee64 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1IU.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1L6 TCGA-E2-A1L6-01A TCGA-E2-A1L6-01A-11D-A13I-02 0dcd1a6c-c493-4697-83d7-9b0c4656e599 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1L6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1L6 TCGA-E2-A1L6-01A TCGA-E2-A1L6-01A-11D-A13J-01 bed7e88d-b9ca-480b-b4c5-43c3403c7990 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1L6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1L6 TCGA-E2-A1L6-01A TCGA-E2-A1L6-01A-11D-A13J-01 bed7e88d-b9ca-480b-b4c5-43c3403c7990 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B09_772072.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-E2-A1L6 TCGA-E2-A1L6-01A TCGA-E2-A1L6-01A-11D-A13J-01 bed7e88d-b9ca-480b-b4c5-43c3403c7990 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B09_772072.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1L6 TCGA-E2-A1L6-01A TCGA-E2-A1L6-01A-11D-A13J-01 bed7e88d-b9ca-480b-b4c5-43c3403c7990 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B09_772072.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1L6 TCGA-E2-A1L6-01A TCGA-E2-A1L6-01A-11D-A13J-01 bed7e88d-b9ca-480b-b4c5-43c3403c7990 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B09_772072.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-E2-A1L6 TCGA-E2-A1L6-01A TCGA-E2-A1L6-01A-11D-A13K-05 8cbe5799-38ee-496f-a694-867c06a6f45b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1L6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1L6 TCGA-E2-A1L6-01A TCGA-E2-A1L6-01A-11D-A13K-05 8cbe5799-38ee-496f-a694-867c06a6f45b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818144_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-E2-A1L6 TCGA-E2-A1L6-01A TCGA-E2-A1L6-01A-11D-A13K-05 8cbe5799-38ee-496f-a694-867c06a6f45b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818144_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-E2-A1L6 TCGA-E2-A1L6-01A TCGA-E2-A1L6-01A-11D-A13K-05 8cbe5799-38ee-496f-a694-867c06a6f45b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-E2-A1L6-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-E2-A1L6 TCGA-E2-A1L6-01A TCGA-E2-A1L6-01A-11D-A13K-05 8cbe5799-38ee-496f-a694-867c06a6f45b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-E2-A1L6-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-E2-A1L6 TCGA-E2-A1L6-01A TCGA-E2-A1L6-01A-11D-A13L-09 f610239f-5610-4d7b-bc31-ae3ccb9c425d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1L6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1L6 TCGA-E2-A1L6-01A TCGA-E2-A1L6-01A-11R-A13P-13 74448df7-25a8-4de2-b88c-b3d94c90a280 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1L6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1L6 TCGA-E2-A1L6-01A TCGA-E2-A1L6-01A-11R-A13P-13 74448df7-25a8-4de2-b88c-b3d94c90a280 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1L6-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1L6 TCGA-E2-A1L6-01A TCGA-E2-A1L6-01A-11R-A13P-13 74448df7-25a8-4de2-b88c-b3d94c90a280 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1L6-01A-11R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1L6 TCGA-E2-A1L6-01A TCGA-E2-A1L6-01A-11R-A13Q-07 4142c779-86ab-44f5-9371-539bbaa363d2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1L6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1L6 TCGA-E2-A1L6-01A TCGA-E2-A1L6-01A-11R-A13Q-07 4142c779-86ab-44f5-9371-539bbaa363d2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_511902.TCGA-E2-A1L6-01A-11R-A13Q-07.110829_UNC11-SN627_0148_BD0DGAABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1L6 TCGA-E2-A1L6-01A TCGA-E2-A1L6-01A-11R-A13Q-07 4142c779-86ab-44f5-9371-539bbaa363d2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_511904.TCGA-E2-A1L6-01A-11R-A13Q-07.110829_UNC11-SN627_0148_BD0DGAABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1L6 TCGA-E2-A1L6-01A TCGA-E2-A1L6-01A-11R-A13Q-07 4142c779-86ab-44f5-9371-539bbaa363d2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_511918.TCGA-E2-A1L6-01A-11R-A13Q-07.110829_UNC11-SN627_0148_BD0DGAABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1L6 TCGA-E2-A1L6-01A TCGA-E2-A1L6-01A-11W-A14Q-09 2ef24456-cca9-4707-a33b-7d5379e0dafc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1L6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1L6 TCGA-E2-A1L6-10A TCGA-E2-A1L6-10A-01D-A13M-02 0457dac3-85e5-48bc-9cef-a17576c9cb4a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1L6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1L6 TCGA-E2-A1L6-10A TCGA-E2-A1L6-10A-01D-A13N-01 0487f52f-8b86-4157-b87c-15376e50e72b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1L6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1L6 TCGA-E2-A1L6-10A TCGA-E2-A1L6-10A-01D-A13N-01 0487f52f-8b86-4157-b87c-15376e50e72b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E11_772108.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-E2-A1L6 TCGA-E2-A1L6-10A TCGA-E2-A1L6-10A-01D-A13N-01 0487f52f-8b86-4157-b87c-15376e50e72b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E11_772108.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1L6 TCGA-E2-A1L6-10A TCGA-E2-A1L6-10A-01D-A13N-01 0487f52f-8b86-4157-b87c-15376e50e72b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E11_772108.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1L6 TCGA-E2-A1L6-10A TCGA-E2-A1L6-10A-01D-A13N-01 0487f52f-8b86-4157-b87c-15376e50e72b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E11_772108.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1L6 TCGA-E2-A1L6-10A TCGA-E2-A1L6-10A-01D-A13N-01 0487f52f-8b86-4157-b87c-15376e50e72b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E11_772108.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1L6 TCGA-E2-A1L6-10A TCGA-E2-A1L6-10A-01D-A13N-01 0487f52f-8b86-4157-b87c-15376e50e72b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E11_772108.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1L6 TCGA-E2-A1L6-10A TCGA-E2-A1L6-10A-01D-A13N-01 0487f52f-8b86-4157-b87c-15376e50e72b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E11_772108.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-E2-A1L6 TCGA-E2-A1L6-10A TCGA-E2-A1L6-10A-01D-A13N-01 0487f52f-8b86-4157-b87c-15376e50e72b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E11_772108.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-E2-A1L6 TCGA-E2-A1L6-10A TCGA-E2-A1L6-10A-01D-A13O-09 3388c646-ffac-43bf-b8a6-c5f216b17af0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1L6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1L6 TCGA-E2-A1L6-10A TCGA-E2-A1L6-10A-01W-A14R-09 5b8431f2-a52e-4995-9ec9-c60089330825 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1L6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1L7 TCGA-E2-A1L7-01A TCGA-E2-A1L7-01A-11D-A140-02 8bdfbd29-b093-4ffb-9bee-88d2f52e90a9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1L7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1L7 TCGA-E2-A1L7-01A TCGA-E2-A1L7-01A-11D-A141-01 11491d25-c862-49e4-8e23-ebbed8e1d87b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1L7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1L7 TCGA-E2-A1L7-01A TCGA-E2-A1L7-01A-11D-A141-01 11491d25-c862-49e4-8e23-ebbed8e1d87b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G09_778132.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-E2-A1L7 TCGA-E2-A1L7-01A TCGA-E2-A1L7-01A-11D-A141-01 11491d25-c862-49e4-8e23-ebbed8e1d87b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G09_778132.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1L7 TCGA-E2-A1L7-01A TCGA-E2-A1L7-01A-11D-A141-01 11491d25-c862-49e4-8e23-ebbed8e1d87b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G09_778132.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1L7 TCGA-E2-A1L7-01A TCGA-E2-A1L7-01A-11D-A141-01 11491d25-c862-49e4-8e23-ebbed8e1d87b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G09_778132.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1L7 TCGA-E2-A1L7-01A TCGA-E2-A1L7-01A-11D-A141-01 11491d25-c862-49e4-8e23-ebbed8e1d87b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G09_778132.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1L7 TCGA-E2-A1L7-01A TCGA-E2-A1L7-01A-11D-A141-01 11491d25-c862-49e4-8e23-ebbed8e1d87b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G09_778132.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1L7 TCGA-E2-A1L7-01A TCGA-E2-A1L7-01A-11D-A141-01 11491d25-c862-49e4-8e23-ebbed8e1d87b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G09_778132.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1L7 TCGA-E2-A1L7-01A TCGA-E2-A1L7-01A-11D-A141-01 11491d25-c862-49e4-8e23-ebbed8e1d87b SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1L7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1L7 TCGA-E2-A1L7-01A TCGA-E2-A1L7-01A-11D-A145-05 6b3c6fba-e3a6-4f32-a00e-918af954c3ed DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818055_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-E2-A1L7 TCGA-E2-A1L7-01A TCGA-E2-A1L7-01A-11D-A145-05 6b3c6fba-e3a6-4f32-a00e-918af954c3ed DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818055_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-E2-A1L7 TCGA-E2-A1L7-01A TCGA-E2-A1L7-01A-11D-A145-05 6b3c6fba-e3a6-4f32-a00e-918af954c3ed DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-E2-A1L7-01A-11D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-E2-A1L7 TCGA-E2-A1L7-01A TCGA-E2-A1L7-01A-11D-A145-05 6b3c6fba-e3a6-4f32-a00e-918af954c3ed DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-E2-A1L7-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-E2-A1L7 TCGA-E2-A1L7-01A TCGA-E2-A1L7-01A-11R-A143-13 e2f7f563-59b7-403c-a6ce-0a86899e1f4c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1L7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1L7 TCGA-E2-A1L7-01A TCGA-E2-A1L7-01A-11R-A143-13 e2f7f563-59b7-403c-a6ce-0a86899e1f4c miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1L7-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1L7 TCGA-E2-A1L7-01A TCGA-E2-A1L7-01A-11R-A143-13 e2f7f563-59b7-403c-a6ce-0a86899e1f4c miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1L7-01A-11R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1L7 TCGA-E2-A1L7-01A TCGA-E2-A1L7-01A-11R-A144-07 ec38c31b-def8-41cc-8656-57ce98f3faa7 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1L7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1L7 TCGA-E2-A1L7-10A TCGA-E2-A1L7-10A-01D-A140-02 893bd420-a0c0-438e-911f-fb311794a52b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1L7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1L7 TCGA-E2-A1L7-10A TCGA-E2-A1L7-10A-01D-A141-01 d3d5bdf4-7a9a-4bf2-9a56-50d3bfd9e7c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1L7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1L7 TCGA-E2-A1L7-10A TCGA-E2-A1L7-10A-01D-A141-01 d3d5bdf4-7a9a-4bf2-9a56-50d3bfd9e7c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B01_778072.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-E2-A1L7 TCGA-E2-A1L7-10A TCGA-E2-A1L7-10A-01D-A141-01 d3d5bdf4-7a9a-4bf2-9a56-50d3bfd9e7c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B01_778072.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1L7 TCGA-E2-A1L7-10A TCGA-E2-A1L7-10A-01D-A141-01 d3d5bdf4-7a9a-4bf2-9a56-50d3bfd9e7c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B01_778072.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1L7 TCGA-E2-A1L7-10A TCGA-E2-A1L7-10A-01D-A141-01 d3d5bdf4-7a9a-4bf2-9a56-50d3bfd9e7c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B01_778072.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1L7 TCGA-E2-A1L7-10A TCGA-E2-A1L7-10A-01D-A141-01 d3d5bdf4-7a9a-4bf2-9a56-50d3bfd9e7c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B01_778072.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1L7 TCGA-E2-A1L7-10A TCGA-E2-A1L7-10A-01D-A141-01 d3d5bdf4-7a9a-4bf2-9a56-50d3bfd9e7c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B01_778072.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1L7 TCGA-E2-A1L7-10A TCGA-E2-A1L7-10A-01D-A141-01 d3d5bdf4-7a9a-4bf2-9a56-50d3bfd9e7c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B01_778072.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1L7 TCGA-E2-A1L7-10A TCGA-E2-A1L7-10A-01D-A141-01 d3d5bdf4-7a9a-4bf2-9a56-50d3bfd9e7c8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B01_778072.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-E2-A1L7 TCGA-E2-A1L7-10A TCGA-E2-A1L7-10A-01D-A142-09 f5286adc-5c10-4b09-a433-daeca4c1f377 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1L7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1L7 TCGA-E2-A1L7-10A TCGA-E2-A1L7-10A-01W-A187-09 acebda45-4dc0-4ec5-bb38-6067ec16373d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1L7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1L7 TCGA-E2-A1L7-11A TCGA-E2-A1L7-11A-33D-A145-05 d9a8158e-ff26-4547-94f6-02aaf0cab855 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1L7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1L7 TCGA-E2-A1L7-11A TCGA-E2-A1L7-11A-33D-A145-05 d9a8158e-ff26-4547-94f6-02aaf0cab855 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-E2-A1L7-11A-33D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-E2-A1L7 TCGA-E2-A1L7-11A TCGA-E2-A1L7-11A-33D-A145-05 d9a8158e-ff26-4547-94f6-02aaf0cab855 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-E2-A1L7-11A-33D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-E2-A1L7 TCGA-E2-A1L7-11A TCGA-E2-A1L7-11A-33R-A143-13 fabe4e35-4d79-4960-a20d-d09908f34e92 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1L9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1L9 TCGA-E2-A1L9-01A TCGA-E2-A1L9-01A-11R-A13P-13 147dcbdf-c147-4c3c-8cdf-f636afa00fbc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1L9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-E2-A1L9 TCGA-E2-A1L9-01A TCGA-E2-A1L9-01A-11R-A13P-13 147dcbdf-c147-4c3c-8cdf-f636afa00fbc miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1LA TCGA-E2-A1LA-01A TCGA-E2-A1LA-01A-11D-A141-01 0c31423d-3359-4d38-889a-8156d35472f3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1LA TCGA-E2-A1LA-01A TCGA-E2-A1LA-01A-11D-A141-01 0c31423d-3359-4d38-889a-8156d35472f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D05_778134.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-E2-A1LA TCGA-E2-A1LA-01A TCGA-E2-A1LA-01A-11D-A141-01 0c31423d-3359-4d38-889a-8156d35472f3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D05_778134.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1LA TCGA-E2-A1LA-01A TCGA-E2-A1LA-01A-11D-A141-01 0c31423d-3359-4d38-889a-8156d35472f3 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1LA TCGA-E2-A1LA-01A TCGA-E2-A1LA-01A-11D-A145-05 74e4ed23-b21d-4071-9d86-4095b28649ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1LA TCGA-E2-A1LA-01A TCGA-E2-A1LA-01A-11D-A145-05 74e4ed23-b21d-4071-9d86-4095b28649ef DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818111_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-E2-A1LA TCGA-E2-A1LA-01A TCGA-E2-A1LA-01A-11D-A145-05 74e4ed23-b21d-4071-9d86-4095b28649ef DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818111_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-E2-A1LA TCGA-E2-A1LA-01A TCGA-E2-A1LA-01A-11D-A145-05 74e4ed23-b21d-4071-9d86-4095b28649ef DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-E2-A1LA-01A-11D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-E2-A1LA TCGA-E2-A1LA-01A TCGA-E2-A1LA-01A-11D-A145-05 74e4ed23-b21d-4071-9d86-4095b28649ef DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-E2-A1LA-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-E2-A1LA TCGA-E2-A1LA-01A TCGA-E2-A1LA-01A-11R-A143-13 49d73515-2ded-421c-86c1-cc77a250ca74 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1LA TCGA-E2-A1LA-01A TCGA-E2-A1LA-01A-11R-A143-13 49d73515-2ded-421c-86c1-cc77a250ca74 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1LA-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1LA TCGA-E2-A1LA-01A TCGA-E2-A1LA-01A-11R-A143-13 49d73515-2ded-421c-86c1-cc77a250ca74 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1LA-01A-11R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1LA TCGA-E2-A1LA-01A TCGA-E2-A1LA-01A-11R-A144-07 9a56eb8b-99fa-4671-99dc-29776dca4cd6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1LA TCGA-E2-A1LA-01A TCGA-E2-A1LA-01A-11R-A144-07 9a56eb8b-99fa-4671-99dc-29776dca4cd6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451840.TCGA-E2-A1LA-01A-11R-A144-07.110801_UNC12-SN629_0114_AC04B7ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1LA TCGA-E2-A1LA-01A TCGA-E2-A1LA-01A-11R-A144-07 9a56eb8b-99fa-4671-99dc-29776dca4cd6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451849.TCGA-E2-A1LA-01A-11R-A144-07.110801_UNC12-SN629_0114_AC04B7ABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1LA TCGA-E2-A1LA-01A TCGA-E2-A1LA-01A-11R-A144-07 9a56eb8b-99fa-4671-99dc-29776dca4cd6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451877.TCGA-E2-A1LA-01A-11R-A144-07.110801_UNC12-SN629_0114_AC04B7ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1LA TCGA-E2-A1LA-01A TCGA-E2-A1LA-01A-11W-A187-09 6f542a68-fa2e-4f30-a24c-c9d9f756e833 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1LA TCGA-E2-A1LA-10A TCGA-E2-A1LA-10A-01D-A140-02 67da0662-1789-493c-bebc-cfee14f97192 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1LA TCGA-E2-A1LA-10A TCGA-E2-A1LA-10A-01D-A141-01 e9da8db5-39da-48ea-9104-55f67c10404b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1LA TCGA-E2-A1LA-10A TCGA-E2-A1LA-10A-01D-A141-01 e9da8db5-39da-48ea-9104-55f67c10404b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B05_778084.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-E2-A1LA TCGA-E2-A1LA-10A TCGA-E2-A1LA-10A-01D-A141-01 e9da8db5-39da-48ea-9104-55f67c10404b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B05_778084.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1LA TCGA-E2-A1LA-10A TCGA-E2-A1LA-10A-01D-A141-01 e9da8db5-39da-48ea-9104-55f67c10404b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B05_778084.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1LA TCGA-E2-A1LA-10A TCGA-E2-A1LA-10A-01D-A141-01 e9da8db5-39da-48ea-9104-55f67c10404b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B05_778084.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1LA TCGA-E2-A1LA-10A TCGA-E2-A1LA-10A-01D-A141-01 e9da8db5-39da-48ea-9104-55f67c10404b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B05_778084.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1LA TCGA-E2-A1LA-10A TCGA-E2-A1LA-10A-01D-A141-01 e9da8db5-39da-48ea-9104-55f67c10404b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B05_778084.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1LA TCGA-E2-A1LA-10A TCGA-E2-A1LA-10A-01D-A141-01 e9da8db5-39da-48ea-9104-55f67c10404b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B05_778084.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1LA TCGA-E2-A1LA-10A TCGA-E2-A1LA-10A-01D-A141-01 e9da8db5-39da-48ea-9104-55f67c10404b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B05_778084.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-E2-A1LA TCGA-E2-A1LA-10A TCGA-E2-A1LA-10A-01D-A142-09 d3d4282c-2865-42e6-b9b3-0d69ffd11ccb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1LA TCGA-E2-A1LA-10A TCGA-E2-A1LA-10A-01W-A187-09 1e7e8f6d-e070-4507-af3f-55e87052d1f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1LB TCGA-E2-A1LB-01A TCGA-E2-A1LB-01A-11D-A140-02 118c545f-7add-4f53-8d34-c890d21e0fa3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1LB TCGA-E2-A1LB-01A TCGA-E2-A1LB-01A-11D-A141-01 b690db1d-6560-4c02-a3b9-3abc43d39c03 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1LB TCGA-E2-A1LB-01A TCGA-E2-A1LB-01A-11D-A141-01 b690db1d-6560-4c02-a3b9-3abc43d39c03 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C01_778114.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-E2-A1LB TCGA-E2-A1LB-01A TCGA-E2-A1LB-01A-11D-A141-01 b690db1d-6560-4c02-a3b9-3abc43d39c03 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C01_778114.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1LB TCGA-E2-A1LB-01A TCGA-E2-A1LB-01A-11D-A141-01 b690db1d-6560-4c02-a3b9-3abc43d39c03 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C01_778114.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1LB TCGA-E2-A1LB-01A TCGA-E2-A1LB-01A-11D-A141-01 b690db1d-6560-4c02-a3b9-3abc43d39c03 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C01_778114.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1LB TCGA-E2-A1LB-01A TCGA-E2-A1LB-01A-11D-A141-01 b690db1d-6560-4c02-a3b9-3abc43d39c03 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C01_778114.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1LB TCGA-E2-A1LB-01A TCGA-E2-A1LB-01A-11D-A141-01 b690db1d-6560-4c02-a3b9-3abc43d39c03 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C01_778114.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1LB TCGA-E2-A1LB-01A TCGA-E2-A1LB-01A-11D-A141-01 b690db1d-6560-4c02-a3b9-3abc43d39c03 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C01_778114.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1LB TCGA-E2-A1LB-01A TCGA-E2-A1LB-01A-11D-A141-01 b690db1d-6560-4c02-a3b9-3abc43d39c03 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C01_778114.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-E2-A1LB TCGA-E2-A1LB-01A TCGA-E2-A1LB-01A-11D-A142-09 377b1816-61e1-431a-9952-71e4d58bbd48 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1LB TCGA-E2-A1LB-01A TCGA-E2-A1LB-01A-11D-A145-05 7ec7e50a-e393-4806-9145-f59c559c324f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1LB TCGA-E2-A1LB-01A TCGA-E2-A1LB-01A-11D-A145-05 7ec7e50a-e393-4806-9145-f59c559c324f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818102_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-E2-A1LB TCGA-E2-A1LB-01A TCGA-E2-A1LB-01A-11D-A145-05 7ec7e50a-e393-4806-9145-f59c559c324f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818102_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-E2-A1LB TCGA-E2-A1LB-01A TCGA-E2-A1LB-01A-11D-A145-05 7ec7e50a-e393-4806-9145-f59c559c324f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-E2-A1LB-01A-11D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-E2-A1LB TCGA-E2-A1LB-01A TCGA-E2-A1LB-01A-11D-A145-05 7ec7e50a-e393-4806-9145-f59c559c324f DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-E2-A1LB-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-E2-A1LB TCGA-E2-A1LB-01A TCGA-E2-A1LB-01A-11R-A143-13 3a967837-2be1-492d-9103-08a361bcf7f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1LB TCGA-E2-A1LB-01A TCGA-E2-A1LB-01A-11R-A143-13 3a967837-2be1-492d-9103-08a361bcf7f7 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1LB-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1LB TCGA-E2-A1LB-01A TCGA-E2-A1LB-01A-11R-A143-13 3a967837-2be1-492d-9103-08a361bcf7f7 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451621.TCGA-E2-A1LB-01A-11R-A144-07.110801_UNC12-SN629_0114_AC04B7ABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1LB TCGA-E2-A1LB-01A TCGA-E2-A1LB-01A-11R-A144-07 acf1ec71-46a5-4e7b-84b1-55203bca29d8 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451629.TCGA-E2-A1LB-01A-11R-A144-07.110801_UNC12-SN629_0114_AC04B7ABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1LB TCGA-E2-A1LB-01A TCGA-E2-A1LB-01A-11R-A144-07 acf1ec71-46a5-4e7b-84b1-55203bca29d8 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_451666.TCGA-E2-A1LB-01A-11R-A144-07.110801_UNC12-SN629_0114_AC04B7ABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1LB TCGA-E2-A1LB-01A TCGA-E2-A1LB-01A-11W-A187-09 ba43644a-2270-47c6-9df7-4ebc4df880ac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1LB TCGA-E2-A1LB-11A TCGA-E2-A1LB-11A-22D-A140-02 443e1f0e-c495-4e8e-95a8-a865fd946a94 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1LB TCGA-E2-A1LB-11A TCGA-E2-A1LB-11A-22D-A141-01 99d34fb1-8701-4388-869c-2cf5a8021d22 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1LB TCGA-E2-A1LB-11A TCGA-E2-A1LB-11A-22D-A141-01 99d34fb1-8701-4388-869c-2cf5a8021d22 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E04_778046.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1LB TCGA-E2-A1LB-11A TCGA-E2-A1LB-11A-22D-A141-01 99d34fb1-8701-4388-869c-2cf5a8021d22 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E04_778046.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E2-A1LB TCGA-E2-A1LB-11A TCGA-E2-A1LB-11A-22D-A141-01 99d34fb1-8701-4388-869c-2cf5a8021d22 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1LB TCGA-E2-A1LB-11A TCGA-E2-A1LB-11A-22D-A145-05 30bb800f-22c2-41cc-b236-f383b4dc3942 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1LB TCGA-E2-A1LB-11A TCGA-E2-A1LB-11A-22D-A145-05 30bb800f-22c2-41cc-b236-f383b4dc3942 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-E2-A1LB-11A-22D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-E2-A1LB TCGA-E2-A1LB-11A TCGA-E2-A1LB-11A-22D-A145-05 30bb800f-22c2-41cc-b236-f383b4dc3942 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-E2-A1LB-11A-22D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-E2-A1LB TCGA-E2-A1LB-11A TCGA-E2-A1LB-11A-22R-A143-13 6ef3a2e1-5789-45e7-8035-912f6bedba5e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1LB TCGA-E2-A1LB-11A TCGA-E2-A1LB-11A-22R-A143-13 6ef3a2e1-5789-45e7-8035-912f6bedba5e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1LB-11A-22R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1LB TCGA-E2-A1LB-11A TCGA-E2-A1LB-11A-22R-A143-13 6ef3a2e1-5789-45e7-8035-912f6bedba5e miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.185.4.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.185.4.0 185 06-FEB-12 12.23.36.013000000 PM TCGA-E2-A1LG TCGA-E2-A1LG-01A TCGA-E2-A1LG-01A-21D-A14I-02 48b2fe1c-530e-4445-a142-59851d2afd18 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-E2-A1LG TCGA-E2-A1LG-01A TCGA-E2-A1LG-01A-21D-A14J-01 b2cc4c34-e90b-4377-b50b-222e507cffcc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-E2-A1LG TCGA-E2-A1LG-01A TCGA-E2-A1LG-01A-21D-A14J-01 b2cc4c34-e90b-4377-b50b-222e507cffcc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C01_780792.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0 124 07-DEC-11 11.20.29.794000000 AM TCGA-E2-A1LG TCGA-E2-A1LG-01A TCGA-E2-A1LG-01A-21D-A14J-01 b2cc4c34-e90b-4377-b50b-222e507cffcc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C01_780792.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-E2-A1LG TCGA-E2-A1LG-01A TCGA-E2-A1LG-01A-21D-A14J-01 b2cc4c34-e90b-4377-b50b-222e507cffcc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C01_780792.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-E2-A1LG TCGA-E2-A1LG-01A TCGA-E2-A1LG-01A-21D-A14J-01 b2cc4c34-e90b-4377-b50b-222e507cffcc SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-E2-A1LG TCGA-E2-A1LG-01A TCGA-E2-A1LG-01A-21D-A14N-05 2a0958f0-c174-4d16-93c6-f54f25249b62 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.12.1.0/6042316072_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.12.1.0 124 07-NOV-11 04.11.38.706000000 PM TCGA-E2-A1LG TCGA-E2-A1LG-01A TCGA-E2-A1LG-01A-21D-A14N-05 2a0958f0-c174-4d16-93c6-f54f25249b62 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.12.1.0/jhu-usc.edu_BRCA.HumanMethylation450.12.lvl-3.TCGA-E2-A1LG-01A-21D-A14N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.12.1.0 124 07-NOV-11 05.36.33.757000000 PM TCGA-E2-A1LG TCGA-E2-A1LG-01A TCGA-E2-A1LG-01A-21R-A14L-13 177f17d0-3576-4190-816b-c69c77e4b1b9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-E2-A1LG TCGA-E2-A1LG-01A TCGA-E2-A1LG-01A-21R-A14L-13 177f17d0-3576-4190-816b-c69c77e4b1b9 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1LG-01A-21R-A14L-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 124 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1LG TCGA-E2-A1LG-01A TCGA-E2-A1LG-01A-21R-A14L-13 177f17d0-3576-4190-816b-c69c77e4b1b9 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1LG-01A-21R-A14L-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 124 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1LG TCGA-E2-A1LG-01A TCGA-E2-A1LG-01A-21R-A14M-07 94d92cd8-21cf-495d-b4fe-8f8c6067fe9e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-E2-A1LG TCGA-E2-A1LG-01A TCGA-E2-A1LG-01A-21R-A14M-07 94d92cd8-21cf-495d-b4fe-8f8c6067fe9e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_558930.TCGA-E2-A1LG-01A-21R-A14M-07.111005_UNC10-SN254_0285_AB087RABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 124 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1LG TCGA-E2-A1LG-01A TCGA-E2-A1LG-01A-21R-A14M-07 94d92cd8-21cf-495d-b4fe-8f8c6067fe9e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_558932.TCGA-E2-A1LG-01A-21R-A14M-07.111005_UNC10-SN254_0285_AB087RABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 124 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1LG TCGA-E2-A1LG-01A TCGA-E2-A1LG-01A-21R-A14M-07 94d92cd8-21cf-495d-b4fe-8f8c6067fe9e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_559043.TCGA-E2-A1LG-01A-21R-A14M-07.111005_UNC10-SN254_0285_AB087RABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 124 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1LG TCGA-E2-A1LG-01A TCGA-E2-A1LG-01A-21W-A16I-09 4b72cba3-92d1-4825-aa19-25d0fb39b5ee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-E2-A1LG TCGA-E2-A1LG-11A TCGA-E2-A1LG-11A-42D-A14I-02 e6e000bc-4c72-4459-8b05-9db0adb21e63 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-E2-A1LG TCGA-E2-A1LG-11A TCGA-E2-A1LG-11A-42D-A14J-01 cee6f226-5a96-43da-a7d9-ae47752bd85c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-E2-A1LG TCGA-E2-A1LG-11A TCGA-E2-A1LG-11A-42D-A14J-01 cee6f226-5a96-43da-a7d9-ae47752bd85c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A03_780810.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0 124 07-DEC-11 11.20.29.794000000 AM TCGA-E2-A1LG TCGA-E2-A1LG-11A TCGA-E2-A1LG-11A-42D-A14J-01 cee6f226-5a96-43da-a7d9-ae47752bd85c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A03_780810.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-E2-A1LG TCGA-E2-A1LG-11A TCGA-E2-A1LG-11A-42D-A14J-01 cee6f226-5a96-43da-a7d9-ae47752bd85c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A03_780810.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-E2-A1LG TCGA-E2-A1LG-11A TCGA-E2-A1LG-11A-42D-A14J-01 cee6f226-5a96-43da-a7d9-ae47752bd85c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A03_780810.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-E2-A1LG TCGA-E2-A1LG-11A TCGA-E2-A1LG-11A-42D-A14J-01 cee6f226-5a96-43da-a7d9-ae47752bd85c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A03_780810.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-E2-A1LG TCGA-E2-A1LG-11A TCGA-E2-A1LG-11A-42D-A14J-01 cee6f226-5a96-43da-a7d9-ae47752bd85c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A03_780810.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-E2-A1LG TCGA-E2-A1LG-11A TCGA-E2-A1LG-11A-42D-A14J-01 cee6f226-5a96-43da-a7d9-ae47752bd85c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A03_780810.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-E2-A1LG TCGA-E2-A1LG-11A TCGA-E2-A1LG-11A-42D-A14J-01 cee6f226-5a96-43da-a7d9-ae47752bd85c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_A03_780810.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0 124 07-DEC-11 01.00.01.995000000 PM TCGA-E2-A1LG TCGA-E2-A1LG-11A TCGA-E2-A1LG-11A-42D-A14K-09 583d989c-fa07-46f5-b463-6ce5a2744927 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-E2-A1LG TCGA-E2-A1LG-11A TCGA-E2-A1LG-11A-42W-A16I-09 f5571c8d-d52a-4906-a234-696f333690ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-E2-A1LH TCGA-E2-A1LH-01A TCGA-E2-A1LH-01A-11D-A14E-02 56afc4f4-31da-4f32-af6e-7216fe2451ee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1LH TCGA-E2-A1LH-01A TCGA-E2-A1LH-01A-11D-A14F-01 8bab6eb6-da3c-49d9-b786-d078f8ebda09 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1LH TCGA-E2-A1LH-01A TCGA-E2-A1LH-01A-11D-A14F-01 8bab6eb6-da3c-49d9-b786-d078f8ebda09 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C08_777644.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0 120 07-DEC-11 11.18.53.710000000 AM TCGA-E2-A1LH TCGA-E2-A1LH-01A TCGA-E2-A1LH-01A-11D-A14F-01 8bab6eb6-da3c-49d9-b786-d078f8ebda09 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C08_777644.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E2-A1LH TCGA-E2-A1LH-01A TCGA-E2-A1LH-01A-11D-A14F-01 8bab6eb6-da3c-49d9-b786-d078f8ebda09 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C08_777644.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E2-A1LH TCGA-E2-A1LH-01A TCGA-E2-A1LH-01A-11D-A14F-01 8bab6eb6-da3c-49d9-b786-d078f8ebda09 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C08_777644.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E2-A1LH TCGA-E2-A1LH-01A TCGA-E2-A1LH-01A-11D-A14F-01 8bab6eb6-da3c-49d9-b786-d078f8ebda09 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C08_777644.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E2-A1LH TCGA-E2-A1LH-01A TCGA-E2-A1LH-01A-11D-A14F-01 8bab6eb6-da3c-49d9-b786-d078f8ebda09 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C08_777644.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E2-A1LH TCGA-E2-A1LH-01A TCGA-E2-A1LH-01A-11D-A14F-01 8bab6eb6-da3c-49d9-b786-d078f8ebda09 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C08_777644.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E2-A1LH TCGA-E2-A1LH-01A TCGA-E2-A1LH-01A-11D-A14F-01 8bab6eb6-da3c-49d9-b786-d078f8ebda09 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C08_777644.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0 120 07-DEC-11 01.00.01.357000000 PM TCGA-E2-A1LH TCGA-E2-A1LH-01A TCGA-E2-A1LH-01A-11D-A14G-09 605f1d27-db45-449a-a68f-4888b8c786a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1LH TCGA-E2-A1LH-01A TCGA-E2-A1LH-01A-11D-A14H-05 c897b95f-a2c6-47a5-adc7-42f3a9d1dd06 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1LH TCGA-E2-A1LH-01A TCGA-E2-A1LH-01A-11D-A14H-05 c897b95f-a2c6-47a5-adc7-42f3a9d1dd06 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0/6057833134_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0 120 07-NOV-11 04.10.35.826000000 PM TCGA-E2-A1LH TCGA-E2-A1LH-01A TCGA-E2-A1LH-01A-11D-A14H-05 c897b95f-a2c6-47a5-adc7-42f3a9d1dd06 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0/6057833134_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0 120 07-NOV-11 04.10.35.826000000 PM TCGA-E2-A1LH TCGA-E2-A1LH-01A TCGA-E2-A1LH-01A-11D-A14H-05 c897b95f-a2c6-47a5-adc7-42f3a9d1dd06 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.11.1.0/jhu-usc.edu_BRCA.HumanMethylation450.11.lvl-2.TCGA-E2-A1LH-01A-11D-A14H-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.11.1.0 120 07-NOV-11 04.58.54.079000000 PM TCGA-E2-A1LH TCGA-E2-A1LH-01A TCGA-E2-A1LH-01A-11D-A14H-05 c897b95f-a2c6-47a5-adc7-42f3a9d1dd06 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.11.1.0/jhu-usc.edu_BRCA.HumanMethylation450.11.lvl-3.TCGA-E2-A1LH-01A-11D-A14H-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.11.1.0 120 07-NOV-11 05.34.44.798000000 PM TCGA-E2-A1LH TCGA-E2-A1LH-01A TCGA-E2-A1LH-01A-11R-A14C-13 18d1f6d2-dac4-4023-a75a-5e60f96e7f07 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1LH TCGA-E2-A1LH-01A TCGA-E2-A1LH-01A-11R-A14D-07 66f3892f-f4ec-412c-9c56-a9e9b56a15ee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1LH TCGA-E2-A1LH-01A TCGA-E2-A1LH-01A-11R-A14D-07 66f3892f-f4ec-412c-9c56-a9e9b56a15ee RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_393585.TCGA-E2-A1LH-01A-11R-A14D-07.110809_UNC9-SN296_0227_AC0437ABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 120 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1LH TCGA-E2-A1LH-01A TCGA-E2-A1LH-01A-11R-A14D-07 66f3892f-f4ec-412c-9c56-a9e9b56a15ee RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1LH TCGA-E2-A1LH-11A TCGA-E2-A1LH-11A-22D-A14E-02 cbe3d240-51d8-4332-933b-5ff76fd79f16 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1LH TCGA-E2-A1LH-11A TCGA-E2-A1LH-11A-22D-A14F-01 4554947c-9ec2-4882-83b0-090520120dcc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1LH TCGA-E2-A1LH-11A TCGA-E2-A1LH-11A-22D-A14F-01 4554947c-9ec2-4882-83b0-090520120dcc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A11_777588.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0 120 07-DEC-11 11.18.53.710000000 AM TCGA-E2-A1LH TCGA-E2-A1LH-11A TCGA-E2-A1LH-11A-22D-A14F-01 4554947c-9ec2-4882-83b0-090520120dcc SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A11_777588.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E2-A1LH TCGA-E2-A1LH-11A TCGA-E2-A1LH-11A-22D-A14F-01 4554947c-9ec2-4882-83b0-090520120dcc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A11_777588.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E2-A1LH TCGA-E2-A1LH-11A TCGA-E2-A1LH-11A-22D-A14F-01 4554947c-9ec2-4882-83b0-090520120dcc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A11_777588.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E2-A1LH TCGA-E2-A1LH-11A TCGA-E2-A1LH-11A-22D-A14F-01 4554947c-9ec2-4882-83b0-090520120dcc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A11_777588.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E2-A1LH TCGA-E2-A1LH-11A TCGA-E2-A1LH-11A-22D-A14F-01 4554947c-9ec2-4882-83b0-090520120dcc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A11_777588.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0 120 07-DEC-11 01.00.01.357000000 PM TCGA-E2-A1LH TCGA-E2-A1LH-11A TCGA-E2-A1LH-11A-22D-A14G-09 4feb8572-68f1-403c-8d3c-198fbe6e9fa4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1LH TCGA-E2-A1LH-11A TCGA-E2-A1LH-11A-22D-A14H-05 2bed074a-dac5-49f4-a267-a35811f1ab8f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1LH TCGA-E2-A1LH-11A TCGA-E2-A1LH-11A-22R-A14C-13 c50daabc-3be5-438a-8d30-63ca70fc6642 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1LH TCGA-E2-A1LH-11A TCGA-E2-A1LH-11A-22R-A14C-13 c50daabc-3be5-438a-8d30-63ca70fc6642 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1LH-11A-22R-A14C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 120 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1LH TCGA-E2-A1LH-11A TCGA-E2-A1LH-11A-22R-A14C-13 c50daabc-3be5-438a-8d30-63ca70fc6642 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1LH-11A-22R-A14C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 120 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1LH TCGA-E2-A1LH-11A TCGA-E2-A1LH-11A-22R-A14D-07 c0c2059a-2931-4834-84a7-bfacf137c182 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1LH TCGA-E2-A1LH-11A TCGA-E2-A1LH-11A-22R-A14D-07 c0c2059a-2931-4834-84a7-bfacf137c182 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_392942.TCGA-E2-A1LH-11A-22R-A14D-07.110809_UNC9-SN296_0227_AC0437ABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 120 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1LH TCGA-E2-A1LH-11A TCGA-E2-A1LH-11A-22R-A14D-07 c0c2059a-2931-4834-84a7-bfacf137c182 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_392990.TCGA-E2-A1LH-11A-22R-A14D-07.110809_UNC9-SN296_0227_AC0437ABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 120 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1LH TCGA-E2-A1LH-11A TCGA-E2-A1LH-11A-22R-A14D-07 c0c2059a-2931-4834-84a7-bfacf137c182 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_393021.TCGA-E2-A1LH-11A-22R-A14D-07.110809_UNC9-SN296_0227_AC0437ABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 120 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1LH TCGA-E2-A1LH-11A TCGA-E2-A1LH-11A-22W-A16H-09 53e1312a-a273-4205-920f-213861f6576a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1LI TCGA-E2-A1LI-01A TCGA-E2-A1LI-01A-12D-A158-02 dc951182-b81e-4482-b03c-4e70a44b5c34 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E2-A1LI TCGA-E2-A1LI-01A TCGA-E2-A1LI-01A-12D-A159-09 c812374c-8bc9-4ccf-9157-fbd9d162ee1e Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-3.TCGA-E2-A1LI-11A-23D-A161-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0 136 07-NOV-11 05.36.48.633000000 PM TCGA-E2-A1LI TCGA-E2-A1LI-11A TCGA-E2-A1LI-11A-23D-A17G-09 21e814d9-cef6-4f92-8ace-592086fc309f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E2-A1LI TCGA-E2-A1LI-11A TCGA-E2-A1LI-11A-23W-A16L-09 0bdc4dc0-6c82-4058-a960-83280cf32be4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E2-A1LK TCGA-E2-A1LK-01A TCGA-E2-A1LK-01A-21D-A14E-02 f4991afc-fe35-4f61-be34-355d3fabab05 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1LK TCGA-E2-A1LK-01A TCGA-E2-A1LK-01A-21D-A14F-01 0efeb3b3-219b-452f-bc62-148b1b2d909b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1LK TCGA-E2-A1LK-01A TCGA-E2-A1LK-01A-21D-A14F-01 0efeb3b3-219b-452f-bc62-148b1b2d909b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E06_777708.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0 120 07-DEC-11 11.18.53.710000000 AM TCGA-E2-A1LK TCGA-E2-A1LK-01A TCGA-E2-A1LK-01A-21D-A14F-01 0efeb3b3-219b-452f-bc62-148b1b2d909b SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E06_777708.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0 120 07-DEC-11 01.00.01.357000000 PM TCGA-E2-A1LK TCGA-E2-A1LK-01A TCGA-E2-A1LK-01A-21D-A14G-09 4e84eed6-82a8-4e91-b0fd-61ec6ef69ce9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LK.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E2-A1LK TCGA-E2-A1LK-01A TCGA-E2-A1LK-01A-21D-A14H-05 2bdeaa04-b7c0-479b-9267-7af3838ab389 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1LL TCGA-E2-A1LL-11A TCGA-E2-A1LL-11A-21D-A141-01 fff37eec-6e6b-405b-a026-359204566edc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B09_778048.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-E2-A1LL TCGA-E2-A1LL-11A TCGA-E2-A1LL-11A-21D-A141-01 fff37eec-6e6b-405b-a026-359204566edc SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B09_778048.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-E2-A1LL TCGA-E2-A1LL-11A TCGA-E2-A1LL-11A-21D-A142-09 ed257922-f940-4fb3-9a92-fde82d130aef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LL.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E2-A1LL TCGA-E2-A1LL-11A TCGA-E2-A1LL-11A-21W-A187-09 73516be4-3e0b-414c-b662-b568c796dbb5 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E2-A1LS TCGA-E2-A1LS-01A TCGA-E2-A1LS-01A-12D-A161-05 f912a0e4-f117-411c-9feb-4f2c8a41fb6a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0/6042316157_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0 136 07-NOV-11 04.13.40.962000000 PM TCGA-E2-A1LS TCGA-E2-A1LS-01A TCGA-E2-A1LS-01A-12D-A161-05 f912a0e4-f117-411c-9feb-4f2c8a41fb6a DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-3.TCGA-E2-A1LS-01A-12D-A161-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0 136 07-NOV-11 05.36.48.633000000 PM TCGA-E2-A1LS TCGA-E2-A1LS-01A TCGA-E2-A1LS-01A-12R-A156-13 7b056fcb-48b2-4cc2-892b-d36f44c5d0c9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E2-A1LS TCGA-E2-A1LS-01A TCGA-E2-A1LS-01A-12R-A156-13 7b056fcb-48b2-4cc2-892b-d36f44c5d0c9 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1LS-01A-12R-A156-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1LS TCGA-E2-A1LS-01A TCGA-E2-A1LS-01A-12R-A156-13 7b056fcb-48b2-4cc2-892b-d36f44c5d0c9 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E2-A1LS-01A-12R-A156-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-E2-A1LS TCGA-E2-A1LS-01A TCGA-E2-A1LS-01A-12R-A157-07 81239059-614b-46b7-a21e-224ec62e2939 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_596232.TCGA-E2-A1LS-01A-12R-A157-07.110916_UNC16-SN851_0087_AD0DE7ABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1LS TCGA-E2-A1LS-01A TCGA-E2-A1LS-01A-12R-A157-07 81239059-614b-46b7-a21e-224ec62e2939 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_596310.TCGA-E2-A1LS-01A-12R-A157-07.110916_UNC16-SN851_0087_AD0DE7ABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E2-A1LS TCGA-E2-A1LS-01A TCGA-E2-A1LS-01A-12W-A16L-09 8604fecc-c8c9-49a0-b7b7-d3dea06e556c Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E2-A1LS TCGA-E2-A1LS-11A TCGA-E2-A1LS-11A-32D-A160-01 38733457-30da-4f95-9f3c-40d60696e75b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E2-A1LS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E2-A1LS TCGA-E2-A1LS-11A TCGA-E2-A1LS-11A-32D-A160-01 38733457-30da-4f95-9f3c-40d60696e75b SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1N3 TCGA-E9-A1N3-10A TCGA-E9-A1N3-10A-01D-A160-01 23776d54-0d92-4dc9-88ad-245854eeb8db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1N3 TCGA-E9-A1N3-10A TCGA-E9-A1N3-10A-01D-A160-01 23776d54-0d92-4dc9-88ad-245854eeb8db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H08_787514.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-E9-A1N3 TCGA-E9-A1N3-10A TCGA-E9-A1N3-10A-01D-A160-01 23776d54-0d92-4dc9-88ad-245854eeb8db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H08_787514.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1N3 TCGA-E9-A1N3-10A TCGA-E9-A1N3-10A-01D-A160-01 23776d54-0d92-4dc9-88ad-245854eeb8db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H08_787514.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1N3 TCGA-E9-A1N3-10A TCGA-E9-A1N3-10A-01D-A160-01 23776d54-0d92-4dc9-88ad-245854eeb8db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H08_787514.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1N3 TCGA-E9-A1N3-10A TCGA-E9-A1N3-10A-01D-A160-01 23776d54-0d92-4dc9-88ad-245854eeb8db SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H08_787514.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1N3 TCGA-E9-A1N3-10A TCGA-E9-A1N3-10A-01D-A160-01 23776d54-0d92-4dc9-88ad-245854eeb8db SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H08_787514.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0 136 07-DEC-11 01.00.02.682000000 PM TCGA-E9-A1N3 TCGA-E9-A1N3-10A TCGA-E9-A1N3-10A-01W-A16L-09 8635398a-0b01-4997-87ed-afee2d2d0e30 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1N4 TCGA-E9-A1N4-01A TCGA-E9-A1N4-01A-11D-A14I-02 90bb0c00-09d3-4d77-8270-cb12b6def3e7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-E9-A1N4 TCGA-E9-A1N4-01A TCGA-E9-A1N4-01A-11D-A14J-01 0ad8db08-453f-4b99-9bff-4c463648a8f6 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_F07_780894.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-E9-A1N4 TCGA-E9-A1N4-01A TCGA-E9-A1N4-01A-11D-A14J-01 0ad8db08-453f-4b99-9bff-4c463648a8f6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_F07_780894.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-E9-A1N4 TCGA-E9-A1N4-01A TCGA-E9-A1N4-01A-11D-A14J-01 0ad8db08-453f-4b99-9bff-4c463648a8f6 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_F07_780894.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0 124 07-DEC-11 01.00.01.995000000 PM TCGA-E9-A1N4 TCGA-E9-A1N4-01A TCGA-E9-A1N4-01A-11D-A14K-09 a3784a48-47a7-4587-91dd-5b8873a24ca9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-E9-A1N4 TCGA-E9-A1N4-01A TCGA-E9-A1N4-01A-11D-A14N-05 a134cdd4-5c64-4e85-9370-b567ab744d87 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-E9-A1N4 TCGA-E9-A1N4-01A TCGA-E9-A1N4-01A-11D-A14N-05 a134cdd4-5c64-4e85-9370-b567ab744d87 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.12.1.0/6042316141_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.12.1.0 124 07-NOV-11 04.11.38.706000000 PM TCGA-E9-A1N4 TCGA-E9-A1N4-01A TCGA-E9-A1N4-01A-11D-A14N-05 a134cdd4-5c64-4e85-9370-b567ab744d87 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G11_777584.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1N5 TCGA-E9-A1N5-10A TCGA-E9-A1N5-10A-01D-A14F-01 8ddd7e67-3f90-40c7-900d-9165f931efac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G11_777584.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1N5 TCGA-E9-A1N5-10A TCGA-E9-A1N5-10A-01D-A14F-01 8ddd7e67-3f90-40c7-900d-9165f931efac SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0/6057833101_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0 120 07-NOV-11 04.10.35.826000000 PM TCGA-E9-A1N5 TCGA-E9-A1N5-11A TCGA-E9-A1N5-11A-41D-A14H-05 907d7b6c-d369-40fe-9ef8-675815016598 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0/6057833101_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0 120 07-NOV-11 04.10.35.826000000 PM TCGA-E9-A1N5 TCGA-E9-A1N5-11A TCGA-E9-A1N5-11A-41D-A14H-05 907d7b6c-d369-40fe-9ef8-675815016598 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.11.1.0/jhu-usc.edu_BRCA.HumanMethylation450.11.lvl-2.TCGA-E9-A1N5-11A-41D-A14H-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.11.1.0 120 07-NOV-11 04.58.54.079000000 PM TCGA-E9-A1N5 TCGA-E9-A1N5-11A TCGA-E9-A1N5-11A-41D-A14H-05 907d7b6c-d369-40fe-9ef8-675815016598 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.11.1.0/jhu-usc.edu_BRCA.HumanMethylation450.11.lvl-3.TCGA-E9-A1N5-11A-41D-A14H-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.11.1.0 120 07-NOV-11 05.34.44.798000000 PM TCGA-E9-A1N5 TCGA-E9-A1N5-11A TCGA-E9-A1N5-11A-41R-A14C-13 d32736f1-b0ff-4600-bb63-d7e677e77c34 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1N5 TCGA-E9-A1N5-11A TCGA-E9-A1N5-11A-41R-A14C-13 d32736f1-b0ff-4600-bb63-d7e677e77c34 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1N5-11A-41R-A14C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 120 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1N5 TCGA-E9-A1N5-11A TCGA-E9-A1N5-11A-41R-A14C-13 d32736f1-b0ff-4600-bb63-d7e677e77c34 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_836980.TCGA-E9-A1N5-11A-41R-A14D-07.110809_UNC9-SN296_0227_AC0437ABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 120 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1N5 TCGA-E9-A1N5-11A TCGA-E9-A1N5-11A-41R-A14D-07 8e7ab480-e75d-49a4-98a6-fcdd2ccefaa7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_837009.TCGA-E9-A1N5-11A-41R-A14D-07.110809_UNC9-SN296_0227_AC0437ABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 120 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1N5 TCGA-E9-A1N5-11A TCGA-E9-A1N5-11A-41R-A14D-07 8e7ab480-e75d-49a4-98a6-fcdd2ccefaa7 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_837192.TCGA-E9-A1N5-11A-41R-A14D-07.110809_UNC9-SN296_0227_AC0437ABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 120 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-01A TCGA-E9-A1N6-01A-11D-A140-02 dcd34d76-edb0-42f6-860c-66f9b7684cb7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-01A TCGA-E9-A1N6-01A-11D-A141-01 e52f1f1f-dfed-49b5-a7f2-f81e0af3c810 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-01A TCGA-E9-A1N6-01A-11D-A141-01 e52f1f1f-dfed-49b5-a7f2-f81e0af3c810 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D09_778086.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-E9-A1N6 TCGA-E9-A1N6-01A TCGA-E9-A1N6-01A-11D-A141-01 e52f1f1f-dfed-49b5-a7f2-f81e0af3c810 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D09_778086.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E9-A1N6 TCGA-E9-A1N6-01A TCGA-E9-A1N6-01A-11D-A141-01 e52f1f1f-dfed-49b5-a7f2-f81e0af3c810 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D09_778086.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E9-A1N6 TCGA-E9-A1N6-01A TCGA-E9-A1N6-01A-11D-A141-01 e52f1f1f-dfed-49b5-a7f2-f81e0af3c810 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D09_778086.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E9-A1N6 TCGA-E9-A1N6-01A TCGA-E9-A1N6-01A-11D-A141-01 e52f1f1f-dfed-49b5-a7f2-f81e0af3c810 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D09_778086.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E9-A1N6 TCGA-E9-A1N6-01A TCGA-E9-A1N6-01A-11D-A141-01 e52f1f1f-dfed-49b5-a7f2-f81e0af3c810 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D09_778086.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-01A TCGA-E9-A1N6-01A-11D-A142-09 86b22be4-1e82-4f49-aa1a-1341df65d73f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-01A TCGA-E9-A1N6-01A-11D-A145-05 dfeab07d-b529-4580-bd0a-c7a295ebd881 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-01A TCGA-E9-A1N6-01A-11D-A145-05 dfeab07d-b529-4580-bd0a-c7a295ebd881 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818122_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-01A TCGA-E9-A1N6-01A-11D-A145-05 dfeab07d-b529-4580-bd0a-c7a295ebd881 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818122_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-01A TCGA-E9-A1N6-01A-11D-A145-05 dfeab07d-b529-4580-bd0a-c7a295ebd881 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-E9-A1N6-01A-11D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-01A TCGA-E9-A1N6-01A-11D-A145-05 dfeab07d-b529-4580-bd0a-c7a295ebd881 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-E9-A1N6-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-01A TCGA-E9-A1N6-01A-11R-A143-13 66023b3a-a312-487a-ae23-a4e86a70db8b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-01A TCGA-E9-A1N6-01A-11R-A143-13 66023b3a-a312-487a-ae23-a4e86a70db8b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1N6-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-01A TCGA-E9-A1N6-01A-11R-A143-13 66023b3a-a312-487a-ae23-a4e86a70db8b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1N6-01A-11R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-01A TCGA-E9-A1N6-01A-11R-A144-07 05b5084f-5e4f-43a3-9819-456a4f24ad82 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-01A TCGA-E9-A1N6-01A-11R-A144-07 05b5084f-5e4f-43a3-9819-456a4f24ad82 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_482216.TCGA-E9-A1N6-01A-11R-A144-07.110810_UNC10-SN254_0263_AB09WEABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-01A TCGA-E9-A1N6-01A-11R-A144-07 05b5084f-5e4f-43a3-9819-456a4f24ad82 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_482232.TCGA-E9-A1N6-01A-11R-A144-07.110810_UNC10-SN254_0263_AB09WEABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-01A TCGA-E9-A1N6-01A-11R-A144-07 05b5084f-5e4f-43a3-9819-456a4f24ad82 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_482256.TCGA-E9-A1N6-01A-11R-A144-07.110810_UNC10-SN254_0263_AB09WEABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-01A TCGA-E9-A1N6-01A-11W-A187-09 ff1a08f3-90db-45ea-872d-46c86f391de1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-10A TCGA-E9-A1N6-10A-01D-A140-02 95b4ec19-15ff-49a9-a01b-cfdcb544f7e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-10A TCGA-E9-A1N6-10A-01D-A141-01 6255148d-b5ba-4987-99bb-7d3533409e73 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_H02_778016.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_H02_778016.ismpolish.data.txt'. TCGA-E9-A1N6 TCGA-E9-A1N6-10A TCGA-E9-A1N6-10A-01D-A141-01 6255148d-b5ba-4987-99bb-7d3533409e73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_H02_778016.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_H02_778016.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_H02_778016.ismpolish.data.txt'. TCGA-E9-A1N6 TCGA-E9-A1N6-10A TCGA-E9-A1N6-10A-01D-A141-01 6255148d-b5ba-4987-99bb-7d3533409e73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_H02_778016.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_H02_778016.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_H02_778016.ismpolish.data.txt'. TCGA-E9-A1N6 TCGA-E9-A1N6-10A TCGA-E9-A1N6-10A-01D-A142-09 82fd2e4b-c823-4169-a471-e8ae68c173a9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-10A TCGA-E9-A1N6-10A-01W-A187-09 93a05d94-5918-476a-8a86-46d21fbe0f8b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-11A TCGA-E9-A1N6-11A-32D-A145-05 d2b1b0e2-50ad-49d2-b175-025cffc2d759 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-11A TCGA-E9-A1N6-11A-32D-A145-05 d2b1b0e2-50ad-49d2-b175-025cffc2d759 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818111_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-11A TCGA-E9-A1N6-11A-32D-A145-05 d2b1b0e2-50ad-49d2-b175-025cffc2d759 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818111_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-11A TCGA-E9-A1N6-11A-32D-A145-05 d2b1b0e2-50ad-49d2-b175-025cffc2d759 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-E9-A1N6-11A-32D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-11A TCGA-E9-A1N6-11A-32D-A145-05 d2b1b0e2-50ad-49d2-b175-025cffc2d759 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-E9-A1N6-11A-32D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-11A TCGA-E9-A1N6-11A-32R-A143-13 41e12e47-4585-4abe-a3ce-49c8e548e6d1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-11A TCGA-E9-A1N6-11A-32R-A144-07 0f263a65-a664-4e23-bd9c-91e955f3bf21 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-11A TCGA-E9-A1N6-11A-32R-A144-07 0f263a65-a664-4e23-bd9c-91e955f3bf21 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_482751.TCGA-E9-A1N6-11A-32R-A144-07.110810_UNC10-SN254_0263_AB09WEABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-11A TCGA-E9-A1N6-11A-32R-A144-07 0f263a65-a664-4e23-bd9c-91e955f3bf21 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_482780.TCGA-E9-A1N6-11A-32R-A144-07.110810_UNC10-SN254_0263_AB09WEABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1N6 TCGA-E9-A1N6-11A TCGA-E9-A1N6-11A-32R-A144-07 0f263a65-a664-4e23-bd9c-91e955f3bf21 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_482813.TCGA-E9-A1N6-11A-32R-A144-07.110810_UNC10-SN254_0263_AB09WEABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1N8 TCGA-E9-A1N8-01A TCGA-E9-A1N8-01A-11D-A140-02 51770759-f81b-426f-99a0-24a3f5bb5c65 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1N8 TCGA-E9-A1N8-01A TCGA-E9-A1N8-01A-11D-A141-01 0179d350-8a90-4269-8eee-a0b971d23cb8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1N8 TCGA-E9-A1N8-01A TCGA-E9-A1N8-01A-11D-A141-01 0179d350-8a90-4269-8eee-a0b971d23cb8 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1N8 TCGA-E9-A1N8-01A TCGA-E9-A1N8-01A-11R-A143-13 7cee831e-a857-435f-b67b-21930097731a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1N8-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1N8 TCGA-E9-A1N8-01A TCGA-E9-A1N8-01A-11R-A143-13 7cee831e-a857-435f-b67b-21930097731a miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_687852.TCGA-E9-A1N8-01A-11R-A144-07.110801_UNC12-SN629_0115_BD0DVEABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1N8 TCGA-E9-A1N8-01A TCGA-E9-A1N8-01A-11R-A144-07 7d6b6a17-5f1e-4586-9316-195c0e96925c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_687862.TCGA-E9-A1N8-01A-11R-A144-07.110801_UNC12-SN629_0115_BD0DVEABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1N8 TCGA-E9-A1N8-01A TCGA-E9-A1N8-01A-11R-A144-07 7d6b6a17-5f1e-4586-9316-195c0e96925c RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1N8 TCGA-E9-A1N8-10A TCGA-E9-A1N8-10A-01D-A141-01 fbcaa7b5-9ca9-4df2-a214-b98918e91f49 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1N8 TCGA-E9-A1N8-10A TCGA-E9-A1N8-10A-01D-A141-01 fbcaa7b5-9ca9-4df2-a214-b98918e91f49 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C04_778012.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-E9-A1N8 TCGA-E9-A1N8-10A TCGA-E9-A1N8-10A-01D-A141-01 fbcaa7b5-9ca9-4df2-a214-b98918e91f49 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C04_778012.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E9-A1N8 TCGA-E9-A1N8-10A TCGA-E9-A1N8-10A-01D-A141-01 fbcaa7b5-9ca9-4df2-a214-b98918e91f49 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C04_778012.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E9-A1N8 TCGA-E9-A1N8-10A TCGA-E9-A1N8-10A-01D-A141-01 fbcaa7b5-9ca9-4df2-a214-b98918e91f49 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C04_778012.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E9-A1N8 TCGA-E9-A1N8-10A TCGA-E9-A1N8-10A-01D-A141-01 fbcaa7b5-9ca9-4df2-a214-b98918e91f49 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C04_778012.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E9-A1N8 TCGA-E9-A1N8-10A TCGA-E9-A1N8-10A-01D-A141-01 fbcaa7b5-9ca9-4df2-a214-b98918e91f49 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C04_778012.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E9-A1N8 TCGA-E9-A1N8-10A TCGA-E9-A1N8-10A-01D-A141-01 fbcaa7b5-9ca9-4df2-a214-b98918e91f49 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C04_778012.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E9-A1N8 TCGA-E9-A1N8-10A TCGA-E9-A1N8-10A-01D-A141-01 fbcaa7b5-9ca9-4df2-a214-b98918e91f49 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C04_778012.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-E9-A1N8 TCGA-E9-A1N8-10A TCGA-E9-A1N8-10A-01D-A142-09 91eb46af-a239-4482-ac32-b4a930aa91c3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1N8 TCGA-E9-A1N8-10A TCGA-E9-A1N8-10A-01W-A187-09 77452972-f8d2-4dd9-99ad-4add353e5776 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1N8 TCGA-E9-A1N8-11A TCGA-E9-A1N8-11A-42D-A145-05 21fdd5df-fde6-449b-90c6-ca687977dd18 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1N8 TCGA-E9-A1N8-11A TCGA-E9-A1N8-11A-42D-A145-05 21fdd5df-fde6-449b-90c6-ca687977dd18 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818111_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-E9-A1N8 TCGA-E9-A1N8-11A TCGA-E9-A1N8-11A-42D-A145-05 21fdd5df-fde6-449b-90c6-ca687977dd18 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818111_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-E9-A1N8 TCGA-E9-A1N8-11A TCGA-E9-A1N8-11A-42D-A145-05 21fdd5df-fde6-449b-90c6-ca687977dd18 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-E9-A1N8-11A-42D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-E9-A1N8 TCGA-E9-A1N8-11A TCGA-E9-A1N8-11A-42D-A145-05 21fdd5df-fde6-449b-90c6-ca687977dd18 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-E9-A1N8-11A-42D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-E9-A1N9 TCGA-E9-A1N9-01A TCGA-E9-A1N9-01A-11D-A14E-02 8eec7450-1934-49dc-8d66-a603399ed012 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1N9 TCGA-E9-A1N9-01A TCGA-E9-A1N9-01A-11D-A14F-01 5ae97b02-7893-4ef8-83aa-585b87983f37 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1N9 TCGA-E9-A1N9-01A TCGA-E9-A1N9-01A-11D-A14F-01 5ae97b02-7893-4ef8-83aa-585b87983f37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E12_777596.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0 120 07-DEC-11 11.18.53.710000000 AM TCGA-E9-A1N9 TCGA-E9-A1N9-01A TCGA-E9-A1N9-01A-11D-A14F-01 5ae97b02-7893-4ef8-83aa-585b87983f37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E12_777596.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1N9 TCGA-E9-A1N9-01A TCGA-E9-A1N9-01A-11D-A14F-01 5ae97b02-7893-4ef8-83aa-585b87983f37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E12_777596.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1N9 TCGA-E9-A1N9-01A TCGA-E9-A1N9-01A-11D-A14F-01 5ae97b02-7893-4ef8-83aa-585b87983f37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E12_777596.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1N9 TCGA-E9-A1N9-01A TCGA-E9-A1N9-01A-11D-A14F-01 5ae97b02-7893-4ef8-83aa-585b87983f37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E12_777596.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1N9 TCGA-E9-A1N9-01A TCGA-E9-A1N9-01A-11D-A14F-01 5ae97b02-7893-4ef8-83aa-585b87983f37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E12_777596.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1N9 TCGA-E9-A1N9-01A TCGA-E9-A1N9-01A-11D-A14F-01 5ae97b02-7893-4ef8-83aa-585b87983f37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E12_777596.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1N9 TCGA-E9-A1N9-01A TCGA-E9-A1N9-01A-11D-A14F-01 5ae97b02-7893-4ef8-83aa-585b87983f37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E12_777596.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0 120 07-DEC-11 01.00.01.357000000 PM TCGA-E9-A1N9 TCGA-E9-A1N9-01A TCGA-E9-A1N9-01A-11D-A14G-09 2aa7a1db-40a5-421b-97ab-1031e6fa7f04 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1N9 TCGA-E9-A1N9-01A TCGA-E9-A1N9-01A-11D-A14H-05 177172a1-5da7-4935-aeec-fe1c0a009340 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1N9 TCGA-E9-A1N9-01A TCGA-E9-A1N9-01A-11D-A14H-05 177172a1-5da7-4935-aeec-fe1c0a009340 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0/6057833057_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0 120 07-NOV-11 04.10.35.826000000 PM TCGA-E9-A1N9 TCGA-E9-A1N9-01A TCGA-E9-A1N9-01A-11D-A14H-05 177172a1-5da7-4935-aeec-fe1c0a009340 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0/6057833057_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0 120 07-NOV-11 04.10.35.826000000 PM TCGA-E9-A1N9 TCGA-E9-A1N9-01A TCGA-E9-A1N9-01A-11D-A14H-05 177172a1-5da7-4935-aeec-fe1c0a009340 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.11.1.0/jhu-usc.edu_BRCA.HumanMethylation450.11.lvl-2.TCGA-E9-A1N9-01A-11D-A14H-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.11.1.0 120 07-NOV-11 04.58.54.079000000 PM TCGA-E9-A1N9 TCGA-E9-A1N9-01A TCGA-E9-A1N9-01A-11D-A14H-05 177172a1-5da7-4935-aeec-fe1c0a009340 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.11.1.0/jhu-usc.edu_BRCA.HumanMethylation450.11.lvl-3.TCGA-E9-A1N9-01A-11D-A14H-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.11.1.0 120 07-NOV-11 05.34.44.798000000 PM TCGA-E9-A1N9 TCGA-E9-A1N9-01A TCGA-E9-A1N9-01A-11R-A14C-13 4cf946cd-2cb1-4dc7-bf4f-8a30fb281b73 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1N9.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1N9 TCGA-E9-A1N9-01A TCGA-E9-A1N9-01A-11R-A14C-13 4cf946cd-2cb1-4dc7-bf4f-8a30fb281b73 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1N9-01A-11R-A14C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 120 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1N9 TCGA-E9-A1N9-01A TCGA-E9-A1N9-01A-11R-A14C-13 4cf946cd-2cb1-4dc7-bf4f-8a30fb281b73 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1N9-01A-11R-A14C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 120 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1N9 TCGA-E9-A1N9-01A TCGA-E9-A1N9-01A-11R-A14D-07 cdada0b1-f90d-40bc-9257-6377987b7baa Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-E9-A1NA-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-E9-A1NA TCGA-E9-A1NA-01A TCGA-E9-A1NA-01A-11R-A143-13 6b26a491-39bd-4ca6-9adc-d90ec3b137a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1NA TCGA-E9-A1NA-01A TCGA-E9-A1NA-01A-11R-A143-13 6b26a491-39bd-4ca6-9adc-d90ec3b137a1 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1NA TCGA-E9-A1NA-10A TCGA-E9-A1NA-10A-01D-A140-02 ffce3ca0-fbfd-451b-a597-f4d303eb308f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1NA TCGA-E9-A1NA-10A TCGA-E9-A1NA-10A-01D-A141-01 5756e4a8-522c-4dd5-9e31-b81815975e60 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1NA TCGA-E9-A1NA-10A TCGA-E9-A1NA-10A-01D-A141-01 5756e4a8-522c-4dd5-9e31-b81815975e60 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C06_778040.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-E9-A1NA TCGA-E9-A1NA-10A TCGA-E9-A1NA-10A-01D-A141-01 5756e4a8-522c-4dd5-9e31-b81815975e60 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1NA TCGA-E9-A1NA-11A TCGA-E9-A1NA-11A-33D-A145-05 636c0353-f5ac-4a7b-b480-e95ce5ed428a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1NA TCGA-E9-A1NA-11A TCGA-E9-A1NA-11A-33D-A145-05 636c0353-f5ac-4a7b-b480-e95ce5ed428a DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-E9-A1NA-11A-33D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-E9-A1NA TCGA-E9-A1NA-11A TCGA-E9-A1NA-11A-33D-A145-05 636c0353-f5ac-4a7b-b480-e95ce5ed428a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-E9-A1NA-11A-33D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-E9-A1NA TCGA-E9-A1NA-11A TCGA-E9-A1NA-11A-33R-A143-13 5d0761ec-6040-4235-bb0a-c311c7bd7509 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1NA TCGA-E9-A1NA-11A TCGA-E9-A1NA-11A-33R-A143-13 5d0761ec-6040-4235-bb0a-c311c7bd7509 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1NA-11A-33R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1NA TCGA-E9-A1NA-11A TCGA-E9-A1NA-11A-33R-A143-13 5d0761ec-6040-4235-bb0a-c311c7bd7509 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_688800.TCGA-E9-A1NA-11A-33R-A144-07.110801_UNC12-SN629_0115_BD0DVEABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1NA TCGA-E9-A1NA-11A TCGA-E9-A1NA-11A-33R-A144-07 7b9569bc-f513-4b64-9a7c-7bb53b9be79b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_688851.TCGA-E9-A1NA-11A-33R-A144-07.110801_UNC12-SN629_0115_BD0DVEABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1NA TCGA-E9-A1NA-11A TCGA-E9-A1NA-11A-33R-A144-07 7b9569bc-f513-4b64-9a7c-7bb53b9be79b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_688877.TCGA-E9-A1NA-11A-33R-A144-07.110801_UNC12-SN629_0115_BD0DVEABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1NC TCGA-E9-A1NC-01A TCGA-E9-A1NC-01A-12D-A158-02 08ee2b22-7db6-477f-894a-81071c6db920 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1NC TCGA-E9-A1NC-01A TCGA-E9-A1NC-01A-12D-A159-09 72b456fd-8339-482b-90ac-68d67b626e5e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1NC TCGA-E9-A1NC-01A TCGA-E9-A1NC-01A-12D-A160-01 7145e63d-79f8-4a72-8571-9065d51c8f8e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1NC TCGA-E9-A1NC-01A TCGA-E9-A1NC-01A-12D-A160-01 7145e63d-79f8-4a72-8571-9065d51c8f8e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H11_787504.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-E9-A1NC TCGA-E9-A1NC-01A TCGA-E9-A1NC-01A-12D-A160-01 7145e63d-79f8-4a72-8571-9065d51c8f8e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H11_787504.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1NC TCGA-E9-A1NC-01A TCGA-E9-A1NC-01A-12D-A160-01 7145e63d-79f8-4a72-8571-9065d51c8f8e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H11_787504.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1NC TCGA-E9-A1NC-01A TCGA-E9-A1NC-01A-12D-A160-01 7145e63d-79f8-4a72-8571-9065d51c8f8e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H11_787504.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1NC TCGA-E9-A1NC-01A TCGA-E9-A1NC-01A-12D-A160-01 7145e63d-79f8-4a72-8571-9065d51c8f8e SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H11_787504.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1NC TCGA-E9-A1NC-01A TCGA-E9-A1NC-01A-12D-A160-01 7145e63d-79f8-4a72-8571-9065d51c8f8e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H11_787504.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0 136 07-DEC-11 01.00.02.682000000 PM TCGA-E9-A1NC TCGA-E9-A1NC-01A TCGA-E9-A1NC-01A-12D-A161-05 965b2c8d-7d15-442b-a578-f09494392e9d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1NC TCGA-E9-A1NC-01A TCGA-E9-A1NC-01A-12D-A161-05 965b2c8d-7d15-442b-a578-f09494392e9d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0/6042324005_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0 136 07-NOV-11 04.13.40.962000000 PM TCGA-E9-A1NC TCGA-E9-A1NC-01A TCGA-E9-A1NC-01A-12D-A161-05 965b2c8d-7d15-442b-a578-f09494392e9d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0/6042324005_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0 136 07-NOV-11 04.13.40.962000000 PM TCGA-E9-A1NC TCGA-E9-A1NC-01A TCGA-E9-A1NC-01A-12D-A161-05 965b2c8d-7d15-442b-a578-f09494392e9d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-2.TCGA-E9-A1NC-01A-12D-A161-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0 136 07-NOV-11 04.57.19.359000000 PM TCGA-E9-A1NC TCGA-E9-A1NC-01A TCGA-E9-A1NC-01A-12D-A161-05 965b2c8d-7d15-442b-a578-f09494392e9d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-3.TCGA-E9-A1NC-01A-12D-A161-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0 136 07-NOV-11 05.36.48.633000000 PM TCGA-E9-A1NC TCGA-E9-A1NC-01A TCGA-E9-A1NC-01A-12R-A156-13 fc5854f7-4865-468e-806b-7b1426b72889 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1NC TCGA-E9-A1NC-01A TCGA-E9-A1NC-01A-12R-A156-13 fc5854f7-4865-468e-806b-7b1426b72889 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1NC-01A-12R-A156-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1NC TCGA-E9-A1NC-01A TCGA-E9-A1NC-01A-12R-A156-13 fc5854f7-4865-468e-806b-7b1426b72889 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1NC-01A-12R-A156-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1NC TCGA-E9-A1NC-01A TCGA-E9-A1NC-01A-12R-A157-07 60770e58-3b35-4222-97e9-d92e973f0203 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1NC TCGA-E9-A1NC-01A TCGA-E9-A1NC-01A-12W-A16L-09 2ba4c398-b94b-49f8-bb88-9d0cb3347d2c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1NC TCGA-E9-A1NC-10A TCGA-E9-A1NC-10A-01D-A158-02 3495e9a9-79a2-479d-a8c9-31befb62d71f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1NC TCGA-E9-A1NC-10A TCGA-E9-A1NC-10A-01D-A159-09 ebb77710-bd6f-435d-83c5-2600f9e422db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1NC TCGA-E9-A1NC-10A TCGA-E9-A1NC-10A-01D-A160-01 4092ef3a-41a3-453b-a465-0513cf05e95e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1NC TCGA-E9-A1NC-10A TCGA-E9-A1NC-10A-01D-A160-01 4092ef3a-41a3-453b-a465-0513cf05e95e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B05_787564.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-E9-A1NC TCGA-E9-A1NC-10A TCGA-E9-A1NC-10A-01D-A160-01 4092ef3a-41a3-453b-a465-0513cf05e95e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B05_787564.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1NC TCGA-E9-A1NC-10A TCGA-E9-A1NC-10A-01D-A160-01 4092ef3a-41a3-453b-a465-0513cf05e95e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B05_787564.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1NC TCGA-E9-A1NC-10A TCGA-E9-A1NC-10A-01D-A160-01 4092ef3a-41a3-453b-a465-0513cf05e95e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B05_787564.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1NC TCGA-E9-A1NC-10A TCGA-E9-A1NC-10A-01D-A160-01 4092ef3a-41a3-453b-a465-0513cf05e95e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B05_787564.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1NC TCGA-E9-A1NC-10A TCGA-E9-A1NC-10A-01D-A160-01 4092ef3a-41a3-453b-a465-0513cf05e95e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B05_787564.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1NC TCGA-E9-A1NC-10A TCGA-E9-A1NC-10A-01D-A160-01 4092ef3a-41a3-453b-a465-0513cf05e95e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B05_787564.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1NC TCGA-E9-A1NC-10A TCGA-E9-A1NC-10A-01D-A160-01 4092ef3a-41a3-453b-a465-0513cf05e95e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B05_787564.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0 136 07-DEC-11 01.00.02.682000000 PM TCGA-E9-A1NC TCGA-E9-A1NC-10A TCGA-E9-A1NC-10A-01W-A16L-09 856410c4-25fe-4534-b2b2-07176054da7c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1ND TCGA-E9-A1ND-01A TCGA-E9-A1ND-01A-11D-A140-02 5b6470c0-b965-4167-9792-76d9ea587c64 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1ND.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1ND TCGA-E9-A1ND-01A TCGA-E9-A1ND-01A-11D-A141-01 20428d6b-edda-4596-af5d-2ae057ba9bbd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1ND.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1ND TCGA-E9-A1ND-01A TCGA-E9-A1ND-01A-11D-A141-01 20428d6b-edda-4596-af5d-2ae057ba9bbd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C07_777978.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-E9-A1ND TCGA-E9-A1ND-01A TCGA-E9-A1ND-01A-11D-A141-01 20428d6b-edda-4596-af5d-2ae057ba9bbd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C07_777978.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E9-A1ND TCGA-E9-A1ND-01A TCGA-E9-A1ND-01A-11D-A141-01 20428d6b-edda-4596-af5d-2ae057ba9bbd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C07_777978.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E9-A1ND TCGA-E9-A1ND-01A TCGA-E9-A1ND-01A-11D-A141-01 20428d6b-edda-4596-af5d-2ae057ba9bbd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C07_777978.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E9-A1ND TCGA-E9-A1ND-01A TCGA-E9-A1ND-01A-11D-A141-01 20428d6b-edda-4596-af5d-2ae057ba9bbd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C07_777978.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E9-A1ND TCGA-E9-A1ND-01A TCGA-E9-A1ND-01A-11D-A141-01 20428d6b-edda-4596-af5d-2ae057ba9bbd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C07_777978.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E9-A1ND TCGA-E9-A1ND-01A TCGA-E9-A1ND-01A-11D-A141-01 20428d6b-edda-4596-af5d-2ae057ba9bbd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C07_777978.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-E9-A1ND TCGA-E9-A1ND-01A TCGA-E9-A1ND-01A-11D-A141-01 20428d6b-edda-4596-af5d-2ae057ba9bbd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C07_777978.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-E9-A1ND TCGA-E9-A1ND-01A TCGA-E9-A1ND-01A-11D-A142-09 8e72652d-3b99-47b2-87fe-04b96b243722 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1ND.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1ND TCGA-E9-A1ND-01A TCGA-E9-A1ND-01A-11D-A145-05 7f990db7-8344-4fe6-9f03-1480d4e69142 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1ND.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1ND TCGA-E9-A1ND-01A TCGA-E9-A1ND-01A-11D-A145-05 7f990db7-8344-4fe6-9f03-1480d4e69142 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818111_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-E9-A1ND TCGA-E9-A1ND-01A TCGA-E9-A1ND-01A-11D-A145-05 7f990db7-8344-4fe6-9f03-1480d4e69142 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818111_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-E9-A1ND TCGA-E9-A1ND-01A TCGA-E9-A1ND-01A-11D-A145-05 7f990db7-8344-4fe6-9f03-1480d4e69142 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-E9-A1ND-01A-11D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-E9-A1ND TCGA-E9-A1ND-01A TCGA-E9-A1ND-01A-11D-A145-05 7f990db7-8344-4fe6-9f03-1480d4e69142 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-E9-A1ND-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-E9-A1ND TCGA-E9-A1ND-01A TCGA-E9-A1ND-01A-11R-A143-13 d5b3c8d2-a59e-4479-8edf-8069a2d320c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1ND.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1ND TCGA-E9-A1ND-01A TCGA-E9-A1ND-01A-11R-A143-13 d5b3c8d2-a59e-4479-8edf-8069a2d320c8 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1ND-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1ND TCGA-E9-A1ND-01A TCGA-E9-A1ND-01A-11R-A143-13 d5b3c8d2-a59e-4479-8edf-8069a2d320c8 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1ND-01A-11R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1ND TCGA-E9-A1ND-01A TCGA-E9-A1ND-01A-11R-A144-07 526da11e-9125-4fcd-98d7-02994c9783d1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1ND.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1ND TCGA-E9-A1ND-01A TCGA-E9-A1ND-01A-11R-A144-07 526da11e-9125-4fcd-98d7-02994c9783d1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_836158.TCGA-E9-A1ND-01A-11R-A144-07.110810_UNC10-SN254_0263_AB09WEABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1ND TCGA-E9-A1ND-01A TCGA-E9-A1ND-01A-11R-A144-07 526da11e-9125-4fcd-98d7-02994c9783d1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_836162.TCGA-E9-A1ND-01A-11R-A144-07.110810_UNC10-SN254_0263_AB09WEABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1ND TCGA-E9-A1ND-01A TCGA-E9-A1ND-01A-11R-A144-07 526da11e-9125-4fcd-98d7-02994c9783d1 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_836178.TCGA-E9-A1ND-01A-11R-A144-07.110810_UNC10-SN254_0263_AB09WEABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1ND TCGA-E9-A1ND-01A TCGA-E9-A1ND-01A-11W-A187-09 057d1eea-9bf6-4852-a27e-6b4ea9594fdb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1ND.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1ND TCGA-E9-A1ND-10A TCGA-E9-A1ND-10A-01D-A140-02 f133bf93-3949-42cc-93f3-f63340ffc3a5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1ND.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1ND TCGA-E9-A1ND-10A TCGA-E9-A1ND-10A-01D-A141-01 7d409272-5a70-41a4-a207-774e00c4c138 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1ND.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1ND TCGA-E9-A1ND-10A TCGA-E9-A1ND-10A-01D-A141-01 7d409272-5a70-41a4-a207-774e00c4c138 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1ND.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1ND TCGA-E9-A1ND-11A TCGA-E9-A1ND-11A-43D-A145-05 39f197ea-ea09-4df8-8d1b-bf76dc88c0fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1ND.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1ND TCGA-E9-A1ND-11A TCGA-E9-A1ND-11A-43D-A145-05 39f197ea-ea09-4df8-8d1b-bf76dc88c0fd DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1ND.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1ND TCGA-E9-A1ND-11A TCGA-E9-A1ND-11A-43R-A144-07 ef84a69f-37bc-46fa-98ac-b3976212e11d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1ND.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-E9-A1ND TCGA-E9-A1ND-11A TCGA-E9-A1ND-11A-43R-A144-07 ef84a69f-37bc-46fa-98ac-b3976212e11d RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-E9-A1NE TCGA-E9-A1NE-01A TCGA-E9-A1NE-01A-21D-A14J-01 f7aa01e5-56c8-4c23-94f5-c028f5b8057c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_F09_780842.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0 124 07-DEC-11 11.20.29.794000000 AM TCGA-E9-A1NE TCGA-E9-A1NE-01A TCGA-E9-A1NE-01A-21D-A14J-01 f7aa01e5-56c8-4c23-94f5-c028f5b8057c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_F09_780842.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-E9-A1NE TCGA-E9-A1NE-01A TCGA-E9-A1NE-01A-21D-A14J-01 f7aa01e5-56c8-4c23-94f5-c028f5b8057c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_F09_780842.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-E9-A1NE TCGA-E9-A1NE-01A TCGA-E9-A1NE-01A-21D-A14J-01 f7aa01e5-56c8-4c23-94f5-c028f5b8057c SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.12.1.0/jhu-usc.edu_BRCA.HumanMethylation450.12.lvl-3.TCGA-E9-A1NE-11A-43D-A14N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.12.1.0 124 07-NOV-11 05.36.33.757000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-01A TCGA-E9-A1NF-01A-11D-A14E-02 084b8a22-e481-4a94-8064-b440eb633105 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-01A TCGA-E9-A1NF-01A-11D-A14F-01 2c3d8b4c-f188-43e2-8b4b-246ad2e392a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-01A TCGA-E9-A1NF-01A-11D-A14F-01 2c3d8b4c-f188-43e2-8b4b-246ad2e392a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E02_777590.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0 120 07-DEC-11 11.18.53.710000000 AM TCGA-E9-A1NF TCGA-E9-A1NF-01A TCGA-E9-A1NF-01A-11D-A14F-01 2c3d8b4c-f188-43e2-8b4b-246ad2e392a2 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E02_777590.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1NF TCGA-E9-A1NF-01A TCGA-E9-A1NF-01A-11D-A14F-01 2c3d8b4c-f188-43e2-8b4b-246ad2e392a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E02_777590.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1NF TCGA-E9-A1NF-01A TCGA-E9-A1NF-01A-11D-A14F-01 2c3d8b4c-f188-43e2-8b4b-246ad2e392a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E02_777590.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0 120 07-DEC-11 01.00.01.357000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-01A TCGA-E9-A1NF-01A-11D-A14G-09 cd428bec-fc31-4d2d-9e6c-c8f30608d797 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-01A TCGA-E9-A1NF-01A-11D-A14H-05 425eb9c1-c351-4183-8ea7-504bcee7714b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-01A TCGA-E9-A1NF-01A-11D-A14H-05 425eb9c1-c351-4183-8ea7-504bcee7714b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0/6057833101_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0 120 07-NOV-11 04.10.35.826000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-01A TCGA-E9-A1NF-01A-11D-A14H-05 425eb9c1-c351-4183-8ea7-504bcee7714b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0/6057833101_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0 120 07-NOV-11 04.10.35.826000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-01A TCGA-E9-A1NF-01A-11D-A14H-05 425eb9c1-c351-4183-8ea7-504bcee7714b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.11.1.0/jhu-usc.edu_BRCA.HumanMethylation450.11.lvl-2.TCGA-E9-A1NF-01A-11D-A14H-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.11.1.0 120 07-NOV-11 04.58.54.079000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-01A TCGA-E9-A1NF-01A-11D-A14H-05 425eb9c1-c351-4183-8ea7-504bcee7714b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.11.1.0/jhu-usc.edu_BRCA.HumanMethylation450.11.lvl-3.TCGA-E9-A1NF-01A-11D-A14H-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.11.1.0 120 07-NOV-11 05.34.44.798000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-01A TCGA-E9-A1NF-01A-11R-A14C-13 c4be82c1-198a-481e-9929-2a878f0445be Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-01A TCGA-E9-A1NF-01A-11R-A14C-13 c4be82c1-198a-481e-9929-2a878f0445be miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1NF-01A-11R-A14C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 120 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-01A TCGA-E9-A1NF-01A-11R-A14C-13 c4be82c1-198a-481e-9929-2a878f0445be miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1NF-01A-11R-A14C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 120 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-01A TCGA-E9-A1NF-01A-11R-A14D-07 69e0026c-c87c-4987-8e46-f94d21f6bfb6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-01A TCGA-E9-A1NF-01A-11R-A14D-07 69e0026c-c87c-4987-8e46-f94d21f6bfb6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_832532.TCGA-E9-A1NF-01A-11R-A14D-07.110909_UNC9-SN296_0239_AD0DFDABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 120 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-01A TCGA-E9-A1NF-01A-11R-A14D-07 69e0026c-c87c-4987-8e46-f94d21f6bfb6 RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-10A TCGA-E9-A1NF-10A-01D-A14E-02 45954d92-5daa-40a0-a6e5-9921eb1336b3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-10A TCGA-E9-A1NF-10A-01D-A14F-01 1d8e4c61-b598-4007-9e9e-dd62e4e64cc7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-10A TCGA-E9-A1NF-10A-01D-A14F-01 1d8e4c61-b598-4007-9e9e-dd62e4e64cc7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E03_777600.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0 120 07-DEC-11 11.18.53.710000000 AM TCGA-E9-A1NF TCGA-E9-A1NF-10A TCGA-E9-A1NF-10A-01D-A14F-01 1d8e4c61-b598-4007-9e9e-dd62e4e64cc7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E03_777600.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1NF TCGA-E9-A1NF-10A TCGA-E9-A1NF-10A-01D-A14F-01 1d8e4c61-b598-4007-9e9e-dd62e4e64cc7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E03_777600.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1NF TCGA-E9-A1NF-10A TCGA-E9-A1NF-10A-01D-A14F-01 1d8e4c61-b598-4007-9e9e-dd62e4e64cc7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E03_777600.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1NF TCGA-E9-A1NF-10A TCGA-E9-A1NF-10A-01D-A14F-01 1d8e4c61-b598-4007-9e9e-dd62e4e64cc7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E03_777600.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1NF TCGA-E9-A1NF-10A TCGA-E9-A1NF-10A-01D-A14F-01 1d8e4c61-b598-4007-9e9e-dd62e4e64cc7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E03_777600.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1NF TCGA-E9-A1NF-10A TCGA-E9-A1NF-10A-01D-A14F-01 1d8e4c61-b598-4007-9e9e-dd62e4e64cc7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E03_777600.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1NF TCGA-E9-A1NF-10A TCGA-E9-A1NF-10A-01D-A14F-01 1d8e4c61-b598-4007-9e9e-dd62e4e64cc7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E03_777600.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0 120 07-DEC-11 01.00.01.357000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-10A TCGA-E9-A1NF-10A-01D-A14G-09 edffc09c-201a-44d1-b758-5d9d64f5f6a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-10A TCGA-E9-A1NF-10A-01W-A16H-09 b67d83c3-9173-43f0-a465-4198c96cc991 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-11A TCGA-E9-A1NF-11A-73D-A14H-05 5c886831-add6-4630-8400-053b80024cab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-11A TCGA-E9-A1NF-11A-73D-A14H-05 5c886831-add6-4630-8400-053b80024cab DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0/6057833101_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0 120 07-NOV-11 04.10.35.826000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-11A TCGA-E9-A1NF-11A-73D-A14H-05 5c886831-add6-4630-8400-053b80024cab DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0/6057833101_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0 120 07-NOV-11 04.10.35.826000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-11A TCGA-E9-A1NF-11A-73D-A14H-05 5c886831-add6-4630-8400-053b80024cab DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.11.1.0/jhu-usc.edu_BRCA.HumanMethylation450.11.lvl-2.TCGA-E9-A1NF-11A-73D-A14H-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.11.1.0 120 07-NOV-11 04.58.54.079000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-11A TCGA-E9-A1NF-11A-73D-A14H-05 5c886831-add6-4630-8400-053b80024cab DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.11.1.0/jhu-usc.edu_BRCA.HumanMethylation450.11.lvl-3.TCGA-E9-A1NF-11A-73D-A14H-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.11.1.0 120 07-NOV-11 05.34.44.798000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-11A TCGA-E9-A1NF-11A-73R-A14C-13 8c55f1b6-4eb8-4e97-ae88-51775b07686e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-11A TCGA-E9-A1NF-11A-73R-A14C-13 8c55f1b6-4eb8-4e97-ae88-51775b07686e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1NF-11A-73R-A14C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 120 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-11A TCGA-E9-A1NF-11A-73R-A14C-13 8c55f1b6-4eb8-4e97-ae88-51775b07686e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1NF-11A-73R-A14C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 120 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-11A TCGA-E9-A1NF-11A-73R-A14D-07 39f6a4d4-650f-4caf-a778-4a24af4f11ba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-11A TCGA-E9-A1NF-11A-73R-A14D-07 39f6a4d4-650f-4caf-a778-4a24af4f11ba RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_832553.TCGA-E9-A1NF-11A-73R-A14D-07.110909_UNC9-SN296_0239_AD0DFDABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 120 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-11A TCGA-E9-A1NF-11A-73R-A14D-07 39f6a4d4-650f-4caf-a778-4a24af4f11ba RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_832554.TCGA-E9-A1NF-11A-73R-A14D-07.110909_UNC9-SN296_0239_AD0DFDABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 120 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1NF TCGA-E9-A1NF-11A TCGA-E9-A1NF-11A-73R-A14D-07 39f6a4d4-650f-4caf-a778-4a24af4f11ba RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_832670.TCGA-E9-A1NF-11A-73R-A14D-07.110909_UNC9-SN296_0239_AD0DFDABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 120 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1NG TCGA-E9-A1NG-01A TCGA-E9-A1NG-01A-21D-A14I-02 d02773a9-ba1c-405b-b86f-fb79fb9054e5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-E9-A1NG TCGA-E9-A1NG-01A TCGA-E9-A1NG-01A-21D-A14J-01 e4df045b-7b42-4c67-8671-cab204450719 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-E9-A1NG TCGA-E9-A1NG-01A TCGA-E9-A1NG-01A-21D-A14J-01 e4df045b-7b42-4c67-8671-cab204450719 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C08_780956.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0 124 07-DEC-11 11.20.29.794000000 AM TCGA-E9-A1NG TCGA-E9-A1NG-01A TCGA-E9-A1NG-01A-21D-A14J-01 e4df045b-7b42-4c67-8671-cab204450719 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C08_780956.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0 124 07-DEC-11 01.00.01.995000000 PM TCGA-E9-A1NG TCGA-E9-A1NG-01A TCGA-E9-A1NG-01A-21D-A14K-09 1cbf389d-1ec8-4543-880f-4ef64c55a44b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-E9-A1NG TCGA-E9-A1NG-01A TCGA-E9-A1NG-01A-21D-A14N-05 a85f2940-3283-4fd6-acb8-9910b04f5101 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_556569.TCGA-E9-A1NG-11A-52R-A14M-07.111005_UNC10-SN254_0285_AB087RABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 124 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1NG TCGA-E9-A1NG-11A TCGA-E9-A1NG-11A-52R-A14M-07 a4172e12-2a82-436e-8cb9-a532dc0e9ec4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_556635.TCGA-E9-A1NG-11A-52R-A14M-07.111005_UNC10-SN254_0285_AB087RABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 124 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1NH TCGA-E9-A1NH-01A TCGA-E9-A1NH-01A-11D-A14E-02 4316b8a6-f663-4c1c-b74d-15e474017c35 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.11.1.0/jhu-usc.edu_BRCA.HumanMethylation450.11.lvl-2.TCGA-E9-A1NH-01A-11D-A14H-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.11.1.0 120 07-NOV-11 04.58.54.079000000 PM TCGA-E9-A1NH TCGA-E9-A1NH-01A TCGA-E9-A1NH-01A-11D-A14H-05 6d7878bd-99b2-40d1-a323-e3242cd336cc DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.11.1.0/jhu-usc.edu_BRCA.HumanMethylation450.11.lvl-3.TCGA-E9-A1NH-01A-11D-A14H-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.11.1.0 120 07-NOV-11 05.34.44.798000000 PM TCGA-E9-A1NH TCGA-E9-A1NH-01A TCGA-E9-A1NH-01A-11R-A14C-13 2712f582-c115-4e39-ba49-e264102a868b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1NH TCGA-E9-A1NH-01A TCGA-E9-A1NH-01A-11R-A14C-13 2712f582-c115-4e39-ba49-e264102a868b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1NH-01A-11R-A14C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 120 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1NH TCGA-E9-A1NH-01A TCGA-E9-A1NH-01A-11R-A14C-13 2712f582-c115-4e39-ba49-e264102a868b miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1NH TCGA-E9-A1NH-11A TCGA-E9-A1NH-11A-33D-A14F-01 9e684ee7-8cbd-4729-b3fe-ba644e2df53e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1NH TCGA-E9-A1NH-11A TCGA-E9-A1NH-11A-33D-A14F-01 9e684ee7-8cbd-4729-b3fe-ba644e2df53e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A03_777602.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0 120 07-DEC-11 11.18.53.710000000 AM TCGA-E9-A1NH TCGA-E9-A1NH-11A TCGA-E9-A1NH-11A-33D-A14F-01 9e684ee7-8cbd-4729-b3fe-ba644e2df53e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A03_777602.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1NH TCGA-E9-A1NH-11A TCGA-E9-A1NH-11A-33D-A14F-01 9e684ee7-8cbd-4729-b3fe-ba644e2df53e SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1NI TCGA-E9-A1NI-01A TCGA-E9-A1NI-01A-11D-A14F-01 f532e691-9f2f-4535-b6ab-00ff42e14176 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E07_777736.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0 120 07-DEC-11 11.18.53.710000000 AM TCGA-E9-A1NI TCGA-E9-A1NI-01A TCGA-E9-A1NI-01A-11D-A14F-01 f532e691-9f2f-4535-b6ab-00ff42e14176 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_E07_777736.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0 120 07-DEC-11 01.00.01.357000000 PM TCGA-E9-A1NI TCGA-E9-A1NI-01A TCGA-E9-A1NI-01A-11D-A14G-09 543d8097-7aa5-4177-a1b5-e63f1a792713 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1NI TCGA-E9-A1NI-01A TCGA-E9-A1NI-01A-11D-A14H-05 e05e9c2c-3276-455e-a644-d98dc69d8d1b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1NI TCGA-E9-A1NI-01A TCGA-E9-A1NI-01A-11D-A14H-05 e05e9c2c-3276-455e-a644-d98dc69d8d1b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0/6057833101_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0 120 07-NOV-11 04.10.35.826000000 PM TCGA-E9-A1NI TCGA-E9-A1NI-01A TCGA-E9-A1NI-01A-11D-A14H-05 e05e9c2c-3276-455e-a644-d98dc69d8d1b DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1NI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1NI TCGA-E9-A1NI-10A TCGA-E9-A1NI-10A-01D-A14F-01 25d59f4f-d388-4ac7-ba90-85d9a31beaaa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A07_777720.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0 120 07-DEC-11 11.18.53.710000000 AM TCGA-E9-A1NI TCGA-E9-A1NI-10A TCGA-E9-A1NI-10A-01D-A14F-01 25d59f4f-d388-4ac7-ba90-85d9a31beaaa SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1QZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A1QZ TCGA-E9-A1QZ-01A TCGA-E9-A1QZ-01A-21D-A166-01 6ff0d34a-027a-46be-a93f-ba6ed2686157 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1QZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A1QZ TCGA-E9-A1QZ-01A TCGA-E9-A1QZ-01A-21D-A166-01 6ff0d34a-027a-46be-a93f-ba6ed2686157 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H06_804510.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-E9-A1QZ TCGA-E9-A1QZ-01A TCGA-E9-A1QZ-01A-21D-A166-01 6ff0d34a-027a-46be-a93f-ba6ed2686157 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H06_804510.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A1QZ TCGA-E9-A1QZ-01A TCGA-E9-A1QZ-01A-21D-A166-01 6ff0d34a-027a-46be-a93f-ba6ed2686157 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H06_804510.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A1QZ TCGA-E9-A1QZ-01A TCGA-E9-A1QZ-01A-21D-A166-01 6ff0d34a-027a-46be-a93f-ba6ed2686157 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H06_804510.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-E9-A1QZ TCGA-E9-A1QZ-01A TCGA-E9-A1QZ-01A-21D-A167-09 2d47b244-e5e4-4645-91cb-71de1d685a95 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1QZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A1QZ TCGA-E9-A1QZ-01A TCGA-E9-A1QZ-01A-21R-A168-13 42efd271-8db8-488a-85d6-0a57e152d7d7 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1QZ-01A-21R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1QZ TCGA-E9-A1QZ-01A TCGA-E9-A1QZ-01A-21R-A168-13 42efd271-8db8-488a-85d6-0a57e152d7d7 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B03_802388.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-E9-A1QZ TCGA-E9-A1QZ-10A TCGA-E9-A1QZ-10A-01D-A166-01 afd13313-993c-4452-b105-d8d6b2836d20 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B03_802388.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A1QZ TCGA-E9-A1QZ-10A TCGA-E9-A1QZ-10A-01D-A166-01 afd13313-993c-4452-b105-d8d6b2836d20 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A1R0 TCGA-E9-A1R0-01A TCGA-E9-A1R0-01A-22D-A16C-01 ef16eca9-6bfa-4db1-860a-adccb484d2b3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A1R0 TCGA-E9-A1R0-01A TCGA-E9-A1R0-01A-22D-A16C-01 ef16eca9-6bfa-4db1-860a-adccb484d2b3 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A1R0 TCGA-E9-A1R0-01A TCGA-E9-A1R0-01A-22D-A16G-05 c5969faa-7fb9-467c-a314-b15afd74cb35 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A1R0 TCGA-E9-A1R0-01A TCGA-E9-A1R0-01A-22D-A16G-05 c5969faa-7fb9-467c-a314-b15afd74cb35 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009060_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-E9-A1R0 TCGA-E9-A1R0-01A TCGA-E9-A1R0-01A-22D-A16G-05 c5969faa-7fb9-467c-a314-b15afd74cb35 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009060_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-E9-A1R0 TCGA-E9-A1R0-01A TCGA-E9-A1R0-01A-22D-A16G-05 c5969faa-7fb9-467c-a314-b15afd74cb35 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-2.TCGA-E9-A1R0-01A-22D-A16G-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0 147 07-NOV-11 05.10.40.874000000 PM TCGA-E9-A1R0 TCGA-E9-A1R0-01A TCGA-E9-A1R0-01A-22D-A16G-05 c5969faa-7fb9-467c-a314-b15afd74cb35 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-3.TCGA-E9-A1R0-01A-22D-A16G-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0 147 07-NOV-11 05.48.07.389000000 PM TCGA-E9-A1R0 TCGA-E9-A1R0-01A TCGA-E9-A1R0-01A-22R-A16E-13 7da07aea-2d6a-47cf-b182-af8ab358398b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A1R0 TCGA-E9-A1R0-01A TCGA-E9-A1R0-01A-22R-A16E-13 7da07aea-2d6a-47cf-b182-af8ab358398b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1R0-01A-22R-A16E-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1R0 TCGA-E9-A1R0-01A TCGA-E9-A1R0-01A-22R-A16E-13 7da07aea-2d6a-47cf-b182-af8ab358398b miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_600450.TCGA-E9-A1R0-01A-22R-A16F-07.111014_UNC12-SN629_0152_BB00YRABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1R0 TCGA-E9-A1R0-01A TCGA-E9-A1R0-01A-22R-A16F-07 4c6443ed-bc36-4c94-85dd-9bf7aab6a5b3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_600455.TCGA-E9-A1R0-01A-22R-A16F-07.111014_UNC12-SN629_0152_BB00YRABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1R0 TCGA-E9-A1R0-01A TCGA-E9-A1R0-01A-22R-A16F-07 4c6443ed-bc36-4c94-85dd-9bf7aab6a5b3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_600509.TCGA-E9-A1R0-01A-22R-A16F-07.111014_UNC12-SN629_0152_BB00YRABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1R0 TCGA-E9-A1R0-01A TCGA-E9-A1R0-01A-22W-A189-09 9294f1fb-8764-4bcc-b186-56913ba98919 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A1R0 TCGA-E9-A1R0-10A TCGA-E9-A1R0-10A-01D-A16B-02 401951ae-365a-4f92-be49-52b48de52f63 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A1R0 TCGA-E9-A1R0-10A TCGA-E9-A1R0-10A-01D-A16C-01 a76e695c-a58b-40a7-9396-7e88734075f2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A1R0 TCGA-E9-A1R0-10A TCGA-E9-A1R0-10A-01D-A16C-01 a76e695c-a58b-40a7-9396-7e88734075f2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F07_799994.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-E9-A1R0 TCGA-E9-A1R0-10A TCGA-E9-A1R0-10A-01D-A16C-01 a76e695c-a58b-40a7-9396-7e88734075f2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F07_799994.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-E9-A1R0 TCGA-E9-A1R0-10A TCGA-E9-A1R0-10A-01D-A16C-01 a76e695c-a58b-40a7-9396-7e88734075f2 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F07_799994.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-E9-A1R0 TCGA-E9-A1R0-10A TCGA-E9-A1R0-10A-01D-A16C-01 a76e695c-a58b-40a7-9396-7e88734075f2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F07_799994.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-E9-A1R0 TCGA-E9-A1R0-10A TCGA-E9-A1R0-10A-01D-A16D-09 ff0a6768-52d3-43fb-a32f-af125579a86c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A1R0 TCGA-E9-A1R0-10A TCGA-E9-A1R0-10A-01W-A189-09 82adb534-17d6-4906-9df2-7819e073fe40 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A1R2 TCGA-E9-A1R2-01A TCGA-E9-A1R2-01A-11D-A14E-02 11098a7b-0ce5-408f-9790-29997248de0d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1R2 TCGA-E9-A1R2-01A TCGA-E9-A1R2-01A-11D-A14F-01 2e6cebd3-ce33-4553-a190-ac2dd9bcf91a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1R2 TCGA-E9-A1R2-01A TCGA-E9-A1R2-01A-11D-A14F-01 2e6cebd3-ce33-4553-a190-ac2dd9bcf91a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G08_777668.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0 120 07-DEC-11 11.18.53.710000000 AM TCGA-E9-A1R2 TCGA-E9-A1R2-01A TCGA-E9-A1R2-01A-11D-A14F-01 2e6cebd3-ce33-4553-a190-ac2dd9bcf91a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G08_777668.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1R2 TCGA-E9-A1R2-01A TCGA-E9-A1R2-01A-11D-A14F-01 2e6cebd3-ce33-4553-a190-ac2dd9bcf91a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G08_777668.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1R2 TCGA-E9-A1R2-01A TCGA-E9-A1R2-01A-11D-A14F-01 2e6cebd3-ce33-4553-a190-ac2dd9bcf91a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G08_777668.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1R2 TCGA-E9-A1R2-01A TCGA-E9-A1R2-01A-11D-A14F-01 2e6cebd3-ce33-4553-a190-ac2dd9bcf91a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G08_777668.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1R2 TCGA-E9-A1R2-01A TCGA-E9-A1R2-01A-11D-A14F-01 2e6cebd3-ce33-4553-a190-ac2dd9bcf91a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G08_777668.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1R2 TCGA-E9-A1R2-01A TCGA-E9-A1R2-01A-11D-A14F-01 2e6cebd3-ce33-4553-a190-ac2dd9bcf91a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G08_777668.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1R2 TCGA-E9-A1R2-01A TCGA-E9-A1R2-01A-11D-A14F-01 2e6cebd3-ce33-4553-a190-ac2dd9bcf91a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_G08_777668.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0 120 07-DEC-11 01.00.01.357000000 PM TCGA-E9-A1R2 TCGA-E9-A1R2-01A TCGA-E9-A1R2-01A-11D-A14G-09 b321a2d9-5345-4891-b450-bfd696c6cfb0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1R2 TCGA-E9-A1R2-01A TCGA-E9-A1R2-01A-11D-A14H-05 cfa09eb5-b492-4124-9997-fcc443f5e2be Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1R2 TCGA-E9-A1R2-01A TCGA-E9-A1R2-01A-11D-A14H-05 cfa09eb5-b492-4124-9997-fcc443f5e2be DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0/6057833057_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0 120 07-NOV-11 04.10.35.826000000 PM TCGA-E9-A1R2 TCGA-E9-A1R2-01A TCGA-E9-A1R2-01A-11D-A14H-05 cfa09eb5-b492-4124-9997-fcc443f5e2be DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0/6057833057_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0 120 07-NOV-11 04.10.35.826000000 PM TCGA-E9-A1R2 TCGA-E9-A1R2-01A TCGA-E9-A1R2-01A-11D-A14H-05 cfa09eb5-b492-4124-9997-fcc443f5e2be DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.11.1.0/jhu-usc.edu_BRCA.HumanMethylation450.11.lvl-2.TCGA-E9-A1R2-01A-11D-A14H-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.11.1.0 120 07-NOV-11 04.58.54.079000000 PM TCGA-E9-A1R2 TCGA-E9-A1R2-01A TCGA-E9-A1R2-01A-11D-A14H-05 cfa09eb5-b492-4124-9997-fcc443f5e2be DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.11.1.0/jhu-usc.edu_BRCA.HumanMethylation450.11.lvl-3.TCGA-E9-A1R2-01A-11D-A14H-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.11.1.0 120 07-NOV-11 05.34.44.798000000 PM TCGA-E9-A1R2 TCGA-E9-A1R2-01A TCGA-E9-A1R2-01A-11R-A14C-13 0736b23f-e5c7-49fc-886a-faffc1a3d5f9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1R2 TCGA-E9-A1R2-01A TCGA-E9-A1R2-01A-11R-A14C-13 0736b23f-e5c7-49fc-886a-faffc1a3d5f9 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1R2-01A-11R-A14C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 120 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1R2 TCGA-E9-A1R2-01A TCGA-E9-A1R2-01A-11R-A14C-13 0736b23f-e5c7-49fc-886a-faffc1a3d5f9 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_832536.TCGA-E9-A1R2-01A-11R-A14D-07.110909_UNC9-SN296_0239_AD0DFDABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 120 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1R2 TCGA-E9-A1R2-01A TCGA-E9-A1R2-01A-11R-A14D-07 e24bfd9d-87b2-44a7-bddc-7b7f60461252 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_832539.TCGA-E9-A1R2-01A-11R-A14D-07.110909_UNC9-SN296_0239_AD0DFDABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 120 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1R2 TCGA-E9-A1R2-01A TCGA-E9-A1R2-01A-11R-A14D-07 e24bfd9d-87b2-44a7-bddc-7b7f60461252 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_832562.TCGA-E9-A1R2-01A-11R-A14D-07.110909_UNC9-SN296_0239_AD0DFDABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 120 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1R2 TCGA-E9-A1R2-01A TCGA-E9-A1R2-01A-11W-A16H-09 c38b9134-74b5-47c9-8606-d4bbdef8156c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1R2 TCGA-E9-A1R2-10A TCGA-E9-A1R2-10A-01D-A14E-02 2187944e-e625-42b1-89d4-ccf5d7d5b1e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1R2 TCGA-E9-A1R2-10A TCGA-E9-A1R2-10A-01D-A14F-01 9144e0eb-f89d-4d04-8c91-be8bd9f9dd67 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1R2 TCGA-E9-A1R2-10A TCGA-E9-A1R2-10A-01D-A14F-01 9144e0eb-f89d-4d04-8c91-be8bd9f9dd67 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1R2 TCGA-E9-A1R2-10A TCGA-E9-A1R2-10A-01W-A16H-09 14a29442-897f-41b1-999a-5dc4f5ba4f9c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1R3 TCGA-E9-A1R3-01A TCGA-E9-A1R3-01A-31D-A14I-02 c165de6a-1213-4cc6-8cca-4b90fea8e7c8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-E9-A1R3 TCGA-E9-A1R3-01A TCGA-E9-A1R3-01A-31D-A14J-01 b48037f7-5060-4cd6-b8b1-07d77bd8c858 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-E9-A1R3 TCGA-E9-A1R3-01A TCGA-E9-A1R3-01A-31D-A14J-01 b48037f7-5060-4cd6-b8b1-07d77bd8c858 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_E07_780860.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0 124 07-DEC-11 11.20.29.794000000 AM TCGA-E9-A1R3 TCGA-E9-A1R3-01A TCGA-E9-A1R3-01A-31D-A14J-01 b48037f7-5060-4cd6-b8b1-07d77bd8c858 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_E07_780860.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-E9-A1R3 TCGA-E9-A1R3-01A TCGA-E9-A1R3-01A-31D-A14J-01 b48037f7-5060-4cd6-b8b1-07d77bd8c858 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.11.1.0/jhu-usc.edu_BRCA.HumanMethylation450.11.lvl-3.TCGA-E9-A1R4-01A-21D-A14H-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.11.1.0 120 07-NOV-11 05.34.44.798000000 PM TCGA-E9-A1R4 TCGA-E9-A1R4-01A TCGA-E9-A1R4-01A-21R-A14C-13 22942a44-249b-49f7-8f2c-2c8d595f1486 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1R4 TCGA-E9-A1R4-01A TCGA-E9-A1R4-01A-21R-A14C-13 22942a44-249b-49f7-8f2c-2c8d595f1486 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1R4 TCGA-E9-A1R4-10A TCGA-E9-A1R4-10A-01D-A14F-01 cc69ebeb-e805-46a4-bb93-da7ad7419fca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_B01_777766.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0 120 07-DEC-11 11.18.53.710000000 AM TCGA-E9-A1R4 TCGA-E9-A1R4-10A TCGA-E9-A1R4-10A-01D-A14F-01 cc69ebeb-e805-46a4-bb93-da7ad7419fca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_B01_777766.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1R4 TCGA-E9-A1R4-10A TCGA-E9-A1R4-10A-01D-A14F-01 cc69ebeb-e805-46a4-bb93-da7ad7419fca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_B01_777766.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1R4 TCGA-E9-A1R4-10A TCGA-E9-A1R4-10A-01D-A14F-01 cc69ebeb-e805-46a4-bb93-da7ad7419fca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_B01_777766.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1R4 TCGA-E9-A1R4-10A TCGA-E9-A1R4-10A-01D-A14F-01 cc69ebeb-e805-46a4-bb93-da7ad7419fca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_B01_777766.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1R4 TCGA-E9-A1R4-10A TCGA-E9-A1R4-10A-01D-A14F-01 cc69ebeb-e805-46a4-bb93-da7ad7419fca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_B01_777766.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1R4 TCGA-E9-A1R4-10A TCGA-E9-A1R4-10A-01D-A14F-01 cc69ebeb-e805-46a4-bb93-da7ad7419fca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_B01_777766.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1R4 TCGA-E9-A1R4-10A TCGA-E9-A1R4-10A-01D-A14F-01 cc69ebeb-e805-46a4-bb93-da7ad7419fca SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_B01_777766.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0 120 07-DEC-11 01.00.01.357000000 PM TCGA-E9-A1R4 TCGA-E9-A1R4-10A TCGA-E9-A1R4-10A-01D-A14G-09 769c4e3f-5ee1-4a17-840e-84cfdba07434 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1R4 TCGA-E9-A1R4-10A TCGA-E9-A1R4-10A-01W-A16H-09 59101a1d-d6ef-4823-8953-951bfc537d6d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1R5 TCGA-E9-A1R5-01A TCGA-E9-A1R5-01A-11D-A14I-02 8a854f99-6ebf-438d-a0b1-95551d7730d3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-E9-A1R5 TCGA-E9-A1R5-01A TCGA-E9-A1R5-01A-11D-A14J-01 07e28d9a-a162-4def-b3db-1ad0ce9827f3 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.12.1.0/jhu-usc.edu_BRCA.HumanMethylation450.12.lvl-3.TCGA-E9-A1R5-01A-11D-A14N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.12.1.0 124 07-NOV-11 05.36.33.757000000 PM TCGA-E9-A1R5 TCGA-E9-A1R5-01A TCGA-E9-A1R5-01A-11R-A14L-13 ef3a8446-79f8-4f95-a07f-c9057d130b72 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-E9-A1R5 TCGA-E9-A1R5-01A TCGA-E9-A1R5-01A-11R-A14L-13 ef3a8446-79f8-4f95-a07f-c9057d130b72 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1R6 TCGA-E9-A1R6-10A TCGA-E9-A1R6-10A-01D-A14F-01 dad0fea2-afcf-4f4d-8075-1e258c42547e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1R6 TCGA-E9-A1R6-10A TCGA-E9-A1R6-10A-01D-A14F-01 dad0fea2-afcf-4f4d-8075-1e258c42547e SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1R6 TCGA-E9-A1R6-10A TCGA-E9-A1R6-10A-01W-A16H-09 59e08a9d-61f2-4928-8b37-c2fb3519a55d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1R7 TCGA-E9-A1R7-01A TCGA-E9-A1R7-01A-11D-A14I-02 19789a66-c5c6-4077-be3b-d211aa5e317c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-E9-A1R7 TCGA-E9-A1R7-01A TCGA-E9-A1R7-01A-11D-A14J-01 23c38a57-6a93-4845-8c80-53d2fb835d37 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-E9-A1R7 TCGA-E9-A1R7-01A TCGA-E9-A1R7-01A-11D-A14J-01 23c38a57-6a93-4845-8c80-53d2fb835d37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_F02_780816.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0 124 07-DEC-11 11.20.29.794000000 AM TCGA-E9-A1R7 TCGA-E9-A1R7-01A TCGA-E9-A1R7-01A-11D-A14J-01 23c38a57-6a93-4845-8c80-53d2fb835d37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_F02_780816.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-E9-A1R7 TCGA-E9-A1R7-01A TCGA-E9-A1R7-01A-11D-A14J-01 23c38a57-6a93-4845-8c80-53d2fb835d37 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-E9-A1R7 TCGA-E9-A1R7-10A TCGA-E9-A1R7-10A-01D-A14J-01 51f9a1c1-673d-41c0-8d88-aa7ac4fe3425 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1R7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-E9-A1R7 TCGA-E9-A1R7-10A TCGA-E9-A1R7-10A-01D-A14J-01 51f9a1c1-673d-41c0-8d88-aa7ac4fe3425 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_D02_780790.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-E9-A1R7 TCGA-E9-A1R7-10A TCGA-E9-A1R7-10A-01D-A14J-01 51f9a1c1-673d-41c0-8d88-aa7ac4fe3425 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_D02_780790.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-E9-A1R7 TCGA-E9-A1R7-10A TCGA-E9-A1R7-10A-01D-A14J-01 51f9a1c1-673d-41c0-8d88-aa7ac4fe3425 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_842968.TCGA-E9-A1R7-11A-42R-A14M-07.110926_UNC9-SN296_0244_AD0DW1ABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 124 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1R7 TCGA-E9-A1R7-11A TCGA-E9-A1R7-11A-42R-A14M-07 1457ae2c-4b9b-448a-b455-432a7121beb4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_843369.TCGA-E9-A1R7-11A-42R-A14M-07.110926_UNC9-SN296_0244_AD0DW1ABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 124 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1RA TCGA-E9-A1RA-01A TCGA-E9-A1RA-01A-11D-A14E-02 1f6f7fe4-1d40-4815-93e8-bf6bed17f56a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1RA TCGA-E9-A1RA-01A TCGA-E9-A1RA-01A-11D-A14F-01 29f0d297-d89f-41a2-8d31-51f9194996f0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1RA TCGA-E9-A1RA-01A TCGA-E9-A1RA-01A-11D-A14F-01 29f0d297-d89f-41a2-8d31-51f9194996f0 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_D02_777678.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0 120 07-DEC-11 01.00.01.357000000 PM TCGA-E9-A1RA TCGA-E9-A1RA-10A TCGA-E9-A1RA-10A-01D-A14G-09 6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1RA TCGA-E9-A1RA-10A TCGA-E9-A1RA-10A-01W-A16H-09 d861e441-e218-4ca9-9e56-80927a411477 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-01A TCGA-E9-A1RB-01A-11D-A158-02 cc7b5800-a95b-49a1-8856-3f6a3dc332dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-01A TCGA-E9-A1RB-01A-11D-A159-09 16e049b7-16f7-44cc-80b7-08db8f33bf7b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-01A TCGA-E9-A1RB-01A-11D-A160-01 458805a0-64c5-4e9a-958e-537047e41a86 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-01A TCGA-E9-A1RB-01A-11D-A160-01 458805a0-64c5-4e9a-958e-537047e41a86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B08_787480.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-E9-A1RB TCGA-E9-A1RB-01A TCGA-E9-A1RB-01A-11D-A160-01 458805a0-64c5-4e9a-958e-537047e41a86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B08_787480.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RB TCGA-E9-A1RB-01A TCGA-E9-A1RB-01A-11D-A160-01 458805a0-64c5-4e9a-958e-537047e41a86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B08_787480.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RB TCGA-E9-A1RB-01A TCGA-E9-A1RB-01A-11D-A160-01 458805a0-64c5-4e9a-958e-537047e41a86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B08_787480.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RB TCGA-E9-A1RB-01A TCGA-E9-A1RB-01A-11D-A160-01 458805a0-64c5-4e9a-958e-537047e41a86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B08_787480.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RB TCGA-E9-A1RB-01A TCGA-E9-A1RB-01A-11D-A160-01 458805a0-64c5-4e9a-958e-537047e41a86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B08_787480.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RB TCGA-E9-A1RB-01A TCGA-E9-A1RB-01A-11D-A160-01 458805a0-64c5-4e9a-958e-537047e41a86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B08_787480.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RB TCGA-E9-A1RB-01A TCGA-E9-A1RB-01A-11D-A160-01 458805a0-64c5-4e9a-958e-537047e41a86 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B08_787480.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0 136 07-DEC-11 01.00.02.682000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-01A TCGA-E9-A1RB-01A-11D-A161-05 7fc78168-b6a7-4bb4-9461-3bc88a70307c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-01A TCGA-E9-A1RB-01A-11D-A161-05 7fc78168-b6a7-4bb4-9461-3bc88a70307c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0/6042324005_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0 136 07-NOV-11 04.13.40.962000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-01A TCGA-E9-A1RB-01A-11D-A161-05 7fc78168-b6a7-4bb4-9461-3bc88a70307c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0/6042324005_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0 136 07-NOV-11 04.13.40.962000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-01A TCGA-E9-A1RB-01A-11D-A161-05 7fc78168-b6a7-4bb4-9461-3bc88a70307c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-2.TCGA-E9-A1RB-01A-11D-A161-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0 136 07-NOV-11 04.57.19.359000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-01A TCGA-E9-A1RB-01A-11D-A161-05 7fc78168-b6a7-4bb4-9461-3bc88a70307c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-3.TCGA-E9-A1RB-01A-11D-A161-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0 136 07-NOV-11 05.36.48.633000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-01A TCGA-E9-A1RB-01A-11D-A17G-09 2ce0333c-deca-4199-a06c-ede43c5575fc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-01A TCGA-E9-A1RB-01A-11R-A156-13 359d0698-37f6-4e25-aa41-4a1b5d4b6b6b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-01A TCGA-E9-A1RB-01A-11R-A156-13 359d0698-37f6-4e25-aa41-4a1b5d4b6b6b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1RB-01A-11R-A156-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-01A TCGA-E9-A1RB-01A-11R-A156-13 359d0698-37f6-4e25-aa41-4a1b5d4b6b6b miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1RB-01A-11R-A156-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-01A TCGA-E9-A1RB-01A-11R-A157-07 7e2a8676-10a4-4abf-b153-2255e06bcb40 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-01A TCGA-E9-A1RB-01A-11R-A157-07 7e2a8676-10a4-4abf-b153-2255e06bcb40 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_490535.TCGA-E9-A1RB-01A-11R-A157-07.110912_UNC15-SN850_0121_AD0E16ABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-01A TCGA-E9-A1RB-01A-11R-A157-07 7e2a8676-10a4-4abf-b153-2255e06bcb40 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_490562.TCGA-E9-A1RB-01A-11R-A157-07.110912_UNC15-SN850_0121_AD0E16ABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-01A TCGA-E9-A1RB-01A-11R-A157-07 7e2a8676-10a4-4abf-b153-2255e06bcb40 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_490707.TCGA-E9-A1RB-01A-11R-A157-07.110912_UNC15-SN850_0121_AD0E16ABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-01A TCGA-E9-A1RB-01A-11W-A16L-09 2b85ed4c-392e-497b-8c1c-f9888f862f24 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-10A TCGA-E9-A1RB-10A-01D-A158-02 5c443ea6-be76-4354-85e7-bf41fb5d1ca4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-10A TCGA-E9-A1RB-10A-01D-A159-09 a4297226-b312-4048-b61f-58bfbc792aef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-10A TCGA-E9-A1RB-10A-01D-A160-01 750df9a9-7886-461f-99b9-d4a141bcd9ab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-10A TCGA-E9-A1RB-10A-01D-A160-01 750df9a9-7886-461f-99b9-d4a141bcd9ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B10_787596.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-E9-A1RB TCGA-E9-A1RB-10A TCGA-E9-A1RB-10A-01D-A160-01 750df9a9-7886-461f-99b9-d4a141bcd9ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B10_787596.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RB TCGA-E9-A1RB-10A TCGA-E9-A1RB-10A-01D-A160-01 750df9a9-7886-461f-99b9-d4a141bcd9ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B10_787596.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RB TCGA-E9-A1RB-10A TCGA-E9-A1RB-10A-01D-A160-01 750df9a9-7886-461f-99b9-d4a141bcd9ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B10_787596.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RB TCGA-E9-A1RB-10A TCGA-E9-A1RB-10A-01D-A160-01 750df9a9-7886-461f-99b9-d4a141bcd9ab SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B10_787596.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RB TCGA-E9-A1RB-10A TCGA-E9-A1RB-10A-01D-A160-01 750df9a9-7886-461f-99b9-d4a141bcd9ab SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-2.TCGA-E9-A1RB-11A-33D-A161-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0 136 07-NOV-11 04.57.19.359000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-11A TCGA-E9-A1RB-11A-33D-A161-05 a00d4b5f-8773-4e64-af23-342ddc055b57 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-3.TCGA-E9-A1RB-11A-33D-A161-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0 136 07-NOV-11 05.36.48.633000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-11A TCGA-E9-A1RB-11A-33R-A156-13 cef8cfda-fce0-46db-b6a9-6896330eb19f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-11A TCGA-E9-A1RB-11A-33R-A156-13 cef8cfda-fce0-46db-b6a9-6896330eb19f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1RB-11A-33R-A156-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-11A TCGA-E9-A1RB-11A-33R-A156-13 cef8cfda-fce0-46db-b6a9-6896330eb19f miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_490855.TCGA-E9-A1RB-11A-33R-A157-07.110912_UNC15-SN850_0121_AD0E16ABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-11A TCGA-E9-A1RB-11A-33R-A157-07 b8499b28-1746-4ffd-a183-a765e6d290e3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_490905.TCGA-E9-A1RB-11A-33R-A157-07.110912_UNC15-SN850_0121_AD0E16ABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1RB TCGA-E9-A1RB-11A TCGA-E9-A1RB-11A-33R-A157-07 b8499b28-1746-4ffd-a183-a765e6d290e3 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_490967.TCGA-E9-A1RB-11A-33R-A157-07.110912_UNC15-SN850_0121_AD0E16ABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1RC TCGA-E9-A1RC-01A TCGA-E9-A1RC-01A-11D-A158-02 8c2ea661-fb92-4eb6-ba35-91ee29675ddd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RC TCGA-E9-A1RC-01A TCGA-E9-A1RC-01A-11D-A159-09 5b5e7eb2-8efc-4681-ab8c-49a9cc4ac6d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RC TCGA-E9-A1RC-01A TCGA-E9-A1RC-01A-11D-A160-01 8805f2a1-b210-4663-b5c6-f2f9baca280a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RC.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RC TCGA-E9-A1RC-01A TCGA-E9-A1RC-01A-11D-A160-01 8805f2a1-b210-4663-b5c6-f2f9baca280a SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_490495.TCGA-E9-A1RC-11A-33R-A157-07.110912_UNC15-SN850_0121_AD0E16ABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1RC TCGA-E9-A1RC-11A TCGA-E9-A1RC-11A-33R-A157-07 81769714-1765-4b76-8a3a-18f79e314852 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_490563.TCGA-E9-A1RC-11A-33R-A157-07.110912_UNC15-SN850_0121_AD0E16ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1RC TCGA-E9-A1RC-11A TCGA-E9-A1RC-11A-33R-A157-07 81769714-1765-4b76-8a3a-18f79e314852 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_490615.TCGA-E9-A1RC-11A-33R-A157-07.110912_UNC15-SN850_0121_AD0E16ABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1RD TCGA-E9-A1RD-01A TCGA-E9-A1RD-01A-11D-A158-02 93329a79-79de-4c25-8eeb-27d55d9426ce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RD TCGA-E9-A1RD-01A TCGA-E9-A1RD-01A-11D-A159-09 23f7a698-eab1-40f1-926c-c95d4ed8213d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RD TCGA-E9-A1RD-01A TCGA-E9-A1RD-01A-11D-A160-01 709852ad-ac59-48af-ba05-2d7a80326afa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RD TCGA-E9-A1RD-01A TCGA-E9-A1RD-01A-11D-A160-01 709852ad-ac59-48af-ba05-2d7a80326afa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F04_787556.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-E9-A1RD TCGA-E9-A1RD-01A TCGA-E9-A1RD-01A-11D-A160-01 709852ad-ac59-48af-ba05-2d7a80326afa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F04_787556.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RD TCGA-E9-A1RD-01A TCGA-E9-A1RD-01A-11D-A160-01 709852ad-ac59-48af-ba05-2d7a80326afa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F04_787556.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RD TCGA-E9-A1RD-01A TCGA-E9-A1RD-01A-11D-A160-01 709852ad-ac59-48af-ba05-2d7a80326afa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F04_787556.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RD TCGA-E9-A1RD-01A TCGA-E9-A1RD-01A-11D-A160-01 709852ad-ac59-48af-ba05-2d7a80326afa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F04_787556.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RD TCGA-E9-A1RD-01A TCGA-E9-A1RD-01A-11D-A160-01 709852ad-ac59-48af-ba05-2d7a80326afa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F04_787556.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RD TCGA-E9-A1RD-01A TCGA-E9-A1RD-01A-11D-A160-01 709852ad-ac59-48af-ba05-2d7a80326afa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F04_787556.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RD TCGA-E9-A1RD-01A TCGA-E9-A1RD-01A-11D-A160-01 709852ad-ac59-48af-ba05-2d7a80326afa SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F04_787556.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0 136 07-DEC-11 01.00.02.682000000 PM TCGA-E9-A1RD TCGA-E9-A1RD-01A TCGA-E9-A1RD-01A-11D-A161-05 0d977f08-bab6-4c7c-af31-43cf9011847d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RD TCGA-E9-A1RD-01A TCGA-E9-A1RD-01A-11D-A161-05 0d977f08-bab6-4c7c-af31-43cf9011847d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0/6042324006_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0 136 07-NOV-11 04.13.40.962000000 PM TCGA-E9-A1RD TCGA-E9-A1RD-01A TCGA-E9-A1RD-01A-11D-A161-05 0d977f08-bab6-4c7c-af31-43cf9011847d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0/6042324006_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0 136 07-NOV-11 04.13.40.962000000 PM TCGA-E9-A1RD TCGA-E9-A1RD-01A TCGA-E9-A1RD-01A-11D-A161-05 0d977f08-bab6-4c7c-af31-43cf9011847d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-2.TCGA-E9-A1RD-01A-11D-A161-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0 136 07-NOV-11 04.57.19.359000000 PM TCGA-E9-A1RD TCGA-E9-A1RD-01A TCGA-E9-A1RD-01A-11D-A161-05 0d977f08-bab6-4c7c-af31-43cf9011847d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-3.TCGA-E9-A1RD-01A-11D-A161-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0 136 07-NOV-11 05.36.48.633000000 PM TCGA-E9-A1RD TCGA-E9-A1RD-01A TCGA-E9-A1RD-01A-11R-A156-13 59c81093-c92d-44d8-8904-f43c2783b35d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RD TCGA-E9-A1RD-01A TCGA-E9-A1RD-01A-11R-A156-13 59c81093-c92d-44d8-8904-f43c2783b35d miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1RD-01A-11R-A156-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1RD TCGA-E9-A1RD-01A TCGA-E9-A1RD-01A-11R-A156-13 59c81093-c92d-44d8-8904-f43c2783b35d miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1RD-01A-11R-A156-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1RD TCGA-E9-A1RD-01A TCGA-E9-A1RD-01A-11R-A157-07 eaacfa7a-fa77-42e6-b9ff-fb529bdd6e16 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RD TCGA-E9-A1RD-01A TCGA-E9-A1RD-01A-11R-A157-07 eaacfa7a-fa77-42e6-b9ff-fb529bdd6e16 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_490540.TCGA-E9-A1RD-01A-11R-A157-07.110912_UNC15-SN850_0121_AD0E16ABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1RD TCGA-E9-A1RD-01A TCGA-E9-A1RD-01A-11R-A157-07 eaacfa7a-fa77-42e6-b9ff-fb529bdd6e16 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_490541.TCGA-E9-A1RD-01A-11R-A157-07.110912_UNC15-SN850_0121_AD0E16ABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1RD TCGA-E9-A1RD-01A TCGA-E9-A1RD-01A-11R-A157-07 eaacfa7a-fa77-42e6-b9ff-fb529bdd6e16 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_490610.TCGA-E9-A1RD-01A-11R-A157-07.110912_UNC15-SN850_0121_AD0E16ABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1RD TCGA-E9-A1RD-01A TCGA-E9-A1RD-01A-11W-A16L-09 24c68313-6b64-4f3f-822b-fbbc15212d0c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RD TCGA-E9-A1RD-10A TCGA-E9-A1RD-10A-01D-A158-02 b0e53086-425f-4f4e-95d8-601859b1ca13 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RD TCGA-E9-A1RD-10A TCGA-E9-A1RD-10A-01D-A159-09 11bfd5bb-d1e6-4fc8-8b2e-c042af5db74c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RD TCGA-E9-A1RD-10A TCGA-E9-A1RD-10A-01D-A160-01 03be8b99-12e5-438b-a991-9b80be892444 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RD TCGA-E9-A1RD-10A TCGA-E9-A1RD-10A-01D-A160-01 03be8b99-12e5-438b-a991-9b80be892444 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D04_787576.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-E9-A1RD TCGA-E9-A1RD-10A TCGA-E9-A1RD-10A-01D-A160-01 03be8b99-12e5-438b-a991-9b80be892444 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D04_787576.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RD TCGA-E9-A1RD-10A TCGA-E9-A1RD-10A-01D-A160-01 03be8b99-12e5-438b-a991-9b80be892444 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RE TCGA-E9-A1RE-10A TCGA-E9-A1RE-10A-01D-A160-01 f81d0cc1-5839-42d2-857c-a53cea716c2e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RE TCGA-E9-A1RE-10A TCGA-E9-A1RE-10A-01D-A160-01 f81d0cc1-5839-42d2-857c-a53cea716c2e SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B02_787472.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-E9-A1RF TCGA-E9-A1RF-01A TCGA-E9-A1RF-01A-11D-A160-01 cec10976-a9f7-47cf-b7b4-a9e04ef7d6c9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B02_787472.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RF TCGA-E9-A1RF-01A TCGA-E9-A1RF-01A-11D-A160-01 cec10976-a9f7-47cf-b7b4-a9e04ef7d6c9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B02_787472.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RF TCGA-E9-A1RF-01A TCGA-E9-A1RF-01A-11D-A160-01 cec10976-a9f7-47cf-b7b4-a9e04ef7d6c9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B02_787472.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RF TCGA-E9-A1RF-01A TCGA-E9-A1RF-01A-11D-A160-01 cec10976-a9f7-47cf-b7b4-a9e04ef7d6c9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B02_787472.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RF TCGA-E9-A1RF-01A TCGA-E9-A1RF-01A-11D-A160-01 cec10976-a9f7-47cf-b7b4-a9e04ef7d6c9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B02_787472.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RF TCGA-E9-A1RF-01A TCGA-E9-A1RF-01A-11D-A160-01 cec10976-a9f7-47cf-b7b4-a9e04ef7d6c9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B02_787472.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RF TCGA-E9-A1RF-01A TCGA-E9-A1RF-01A-11D-A160-01 cec10976-a9f7-47cf-b7b4-a9e04ef7d6c9 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B02_787472.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0 136 07-DEC-11 01.00.02.682000000 PM TCGA-E9-A1RF TCGA-E9-A1RF-01A TCGA-E9-A1RF-01A-11D-A161-05 ab7e65dd-9a97-4ac6-b416-ae25821a325d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RF TCGA-E9-A1RF-01A TCGA-E9-A1RF-01A-11D-A161-05 ab7e65dd-9a97-4ac6-b416-ae25821a325d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0/6042316157_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0 136 07-NOV-11 04.13.40.962000000 PM TCGA-E9-A1RF TCGA-E9-A1RF-01A TCGA-E9-A1RF-01A-11D-A161-05 ab7e65dd-9a97-4ac6-b416-ae25821a325d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0/6042316157_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0 136 07-NOV-11 04.13.40.962000000 PM TCGA-E9-A1RF TCGA-E9-A1RF-01A TCGA-E9-A1RF-01A-11D-A161-05 ab7e65dd-9a97-4ac6-b416-ae25821a325d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-2.TCGA-E9-A1RF-01A-11D-A161-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0 136 07-NOV-11 04.57.19.359000000 PM TCGA-E9-A1RF TCGA-E9-A1RF-01A TCGA-E9-A1RF-01A-11D-A161-05 ab7e65dd-9a97-4ac6-b416-ae25821a325d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-3.TCGA-E9-A1RF-01A-11D-A161-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0 136 07-NOV-11 05.36.48.633000000 PM TCGA-E9-A1RF TCGA-E9-A1RF-01A TCGA-E9-A1RF-01A-11D-A17G-09 d2720ff2-408e-43aa-a10d-e8a0c0b34943 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RF TCGA-E9-A1RF-01A TCGA-E9-A1RF-01A-11R-A156-13 06787c60-7d9e-40aa-8bb9-8c92c4409040 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RF TCGA-E9-A1RF-01A TCGA-E9-A1RF-01A-11R-A156-13 06787c60-7d9e-40aa-8bb9-8c92c4409040 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1RF-01A-11R-A156-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1RF TCGA-E9-A1RF-01A TCGA-E9-A1RF-01A-11R-A156-13 06787c60-7d9e-40aa-8bb9-8c92c4409040 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_489947.TCGA-E9-A1RF-01A-11R-A157-07.110912_UNC15-SN850_0122_BC004VABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1RF TCGA-E9-A1RF-01A TCGA-E9-A1RF-01A-11R-A157-07 502939cc-3381-4bc2-9ae6-332846cf836b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_489966.TCGA-E9-A1RF-01A-11R-A157-07.110912_UNC15-SN850_0122_BC004VABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1RF TCGA-E9-A1RF-01A TCGA-E9-A1RF-01A-11R-A157-07 502939cc-3381-4bc2-9ae6-332846cf836b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_489995.TCGA-E9-A1RF-01A-11R-A157-07.110912_UNC15-SN850_0122_BC004VABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1RF TCGA-E9-A1RF-01A TCGA-E9-A1RF-01A-11W-A16L-09 962bcc0d-08f7-4acc-81eb-875c3a3e2fe7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RF TCGA-E9-A1RF-10A TCGA-E9-A1RF-10A-01D-A158-02 58b527d9-fea2-4518-9a35-d50e9548359d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RF TCGA-E9-A1RF-10A TCGA-E9-A1RF-10A-01D-A159-09 0c36d388-c63d-4ab1-8303-6d5005708525 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RF TCGA-E9-A1RF-10A TCGA-E9-A1RF-10A-01D-A160-01 efa94d7f-691e-4dfb-a27a-e145fd2f2b4e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RF TCGA-E9-A1RF-10A TCGA-E9-A1RF-10A-01D-A160-01 efa94d7f-691e-4dfb-a27a-e145fd2f2b4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D07_787494.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-E9-A1RF TCGA-E9-A1RF-10A TCGA-E9-A1RF-10A-01D-A160-01 efa94d7f-691e-4dfb-a27a-e145fd2f2b4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D07_787494.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RF TCGA-E9-A1RF-10A TCGA-E9-A1RF-10A-01D-A160-01 efa94d7f-691e-4dfb-a27a-e145fd2f2b4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D07_787494.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RF TCGA-E9-A1RF-10A TCGA-E9-A1RF-10A-01D-A160-01 efa94d7f-691e-4dfb-a27a-e145fd2f2b4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D07_787494.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RF TCGA-E9-A1RF-10A TCGA-E9-A1RF-10A-01D-A160-01 efa94d7f-691e-4dfb-a27a-e145fd2f2b4e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D07_787494.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A1RF TCGA-E9-A1RF-10A TCGA-E9-A1RF-10A-01D-A160-01 efa94d7f-691e-4dfb-a27a-e145fd2f2b4e SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D07_787494.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0 136 07-DEC-11 01.00.02.682000000 PM TCGA-E9-A1RF TCGA-E9-A1RF-10A TCGA-E9-A1RF-10A-01D-A17G-09 70fbc8e0-bd09-4e9b-ad51-0170e11ad3d1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RF TCGA-E9-A1RF-10A TCGA-E9-A1RF-10A-01W-A16L-09 3f2af208-69bd-4d40-a2e3-4e714142100c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RF TCGA-E9-A1RF-11A TCGA-E9-A1RF-11A-32D-A161-05 26e117c8-22ab-4020-87a1-dcb011c1ace1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RF TCGA-E9-A1RF-11A TCGA-E9-A1RF-11A-32D-A161-05 26e117c8-22ab-4020-87a1-dcb011c1ace1 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-2.TCGA-E9-A1RF-11A-32D-A161-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0 136 07-NOV-11 04.57.19.359000000 PM TCGA-E9-A1RF TCGA-E9-A1RF-11A TCGA-E9-A1RF-11A-32D-A161-05 26e117c8-22ab-4020-87a1-dcb011c1ace1 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-3.TCGA-E9-A1RF-11A-32D-A161-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0 136 07-NOV-11 05.36.48.633000000 PM TCGA-E9-A1RF TCGA-E9-A1RF-11A TCGA-E9-A1RF-11A-32R-A156-13 fcdee4ac-1752-4e11-8cd8-65a56b32f915 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A1RF TCGA-E9-A1RF-11A TCGA-E9-A1RF-11A-32R-A156-13 fcdee4ac-1752-4e11-8cd8-65a56b32f915 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1RF-11A-32R-A156-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1RF TCGA-E9-A1RF-11A TCGA-E9-A1RF-11A-32R-A156-13 fcdee4ac-1752-4e11-8cd8-65a56b32f915 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_490009.TCGA-E9-A1RF-11A-32R-A157-07.110912_UNC15-SN850_0122_BC004VABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1RF TCGA-E9-A1RF-11A TCGA-E9-A1RF-11A-32R-A157-07 da13db3f-cde6-4e25-9596-009147aa3fa9 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_490017.TCGA-E9-A1RF-11A-32R-A157-07.110912_UNC15-SN850_0122_BC004VABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1RF TCGA-E9-A1RF-11A TCGA-E9-A1RF-11A-32R-A157-07 da13db3f-cde6-4e25-9596-009147aa3fa9 RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.11.1.0/jhu-usc.edu_BRCA.HumanMethylation450.11.lvl-3.TCGA-E9-A1RG-01A-11D-A14H-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.11.1.0 120 07-NOV-11 05.34.44.798000000 PM TCGA-E9-A1RG TCGA-E9-A1RG-01A TCGA-E9-A1RG-01A-11R-A14C-13 45b95bd0-40bc-4a8b-991e-c9b1c4f7afa6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1RG TCGA-E9-A1RG-01A TCGA-E9-A1RG-01A-11R-A14C-13 45b95bd0-40bc-4a8b-991e-c9b1c4f7afa6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1RG-01A-11R-A14C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 120 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1RG TCGA-E9-A1RG-01A TCGA-E9-A1RG-01A-11R-A14C-13 45b95bd0-40bc-4a8b-991e-c9b1c4f7afa6 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1RG-01A-11R-A14C-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 120 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1RG TCGA-E9-A1RG-01A TCGA-E9-A1RG-01A-11R-A14D-07 dbf09347-4e3e-490e-977f-97d826143634 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1RG TCGA-E9-A1RG-01A TCGA-E9-A1RG-01A-11W-A16H-09 f1e1040e-b3cd-4b82-a6d2-71d17b6430ae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1RG TCGA-E9-A1RG-10A TCGA-E9-A1RG-10A-01D-A14E-02 b90b11c8-a397-4dba-98d1-f229848aa46f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1RG TCGA-E9-A1RG-10A TCGA-E9-A1RG-10A-01D-A14F-01 7b833e39-56ac-48ac-8c7f-d63c1e585956 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1RG TCGA-E9-A1RG-10A TCGA-E9-A1RG-10A-01D-A14F-01 7b833e39-56ac-48ac-8c7f-d63c1e585956 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_D03_777656.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0 120 07-DEC-11 11.18.53.710000000 AM TCGA-E9-A1RG TCGA-E9-A1RG-10A TCGA-E9-A1RG-10A-01D-A14F-01 7b833e39-56ac-48ac-8c7f-d63c1e585956 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_D03_777656.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1RG TCGA-E9-A1RG-10A TCGA-E9-A1RG-10A-01D-A14F-01 7b833e39-56ac-48ac-8c7f-d63c1e585956 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_D03_777656.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1RG TCGA-E9-A1RG-10A TCGA-E9-A1RG-10A-01D-A14F-01 7b833e39-56ac-48ac-8c7f-d63c1e585956 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_D03_777656.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1RG TCGA-E9-A1RG-10A TCGA-E9-A1RG-10A-01D-A14F-01 7b833e39-56ac-48ac-8c7f-d63c1e585956 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_D03_777656.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-E9-A1RG TCGA-E9-A1RG-10A TCGA-E9-A1RG-10A-01D-A14F-01 7b833e39-56ac-48ac-8c7f-d63c1e585956 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_D03_777656.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0 120 07-DEC-11 01.00.01.357000000 PM TCGA-E9-A1RG TCGA-E9-A1RG-10A TCGA-E9-A1RG-10A-01D-A14G-09 6db47e2e-f864-4b04-8a81-45bf16681178 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1RG TCGA-E9-A1RG-10A TCGA-E9-A1RG-10A-01W-A16H-09 823ac652-20a2-4871-a272-2de660e918c6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-E9-A1RH TCGA-E9-A1RH-01A TCGA-E9-A1RH-01A-21D-A165-02 9122f240-9554-4cb5-a5d5-bdf77aa69a2a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A1RH TCGA-E9-A1RH-01A TCGA-E9-A1RH-01A-21D-A166-01 f1b4f790-083e-44f0-b924-06dc7c167a20 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A1RH TCGA-E9-A1RH-01A TCGA-E9-A1RH-01A-21D-A166-01 f1b4f790-083e-44f0-b924-06dc7c167a20 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F05_802488.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-E9-A1RH TCGA-E9-A1RH-01A TCGA-E9-A1RH-01A-21D-A166-01 f1b4f790-083e-44f0-b924-06dc7c167a20 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_F05_802488.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A1RH TCGA-E9-A1RH-01A TCGA-E9-A1RH-01A-21D-A166-01 f1b4f790-083e-44f0-b924-06dc7c167a20 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A1RH TCGA-E9-A1RH-01A TCGA-E9-A1RH-01A-21R-A168-13 1e799a1a-798c-4ceb-aa66-81efb54ff774 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1RH-01A-21R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1RH TCGA-E9-A1RH-01A TCGA-E9-A1RH-01A-21R-A168-13 1e799a1a-798c-4ceb-aa66-81efb54ff774 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_569430.TCGA-E9-A1RH-01A-21R-A169-07.110921_UNC9-SN296_0243_BC010LABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1RH TCGA-E9-A1RH-01A TCGA-E9-A1RH-01A-21R-A169-07 422a4277-12f1-42ae-9f94-88d37517b9b0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_569442.TCGA-E9-A1RH-01A-21R-A169-07.110921_UNC9-SN296_0243_BC010LABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1RH TCGA-E9-A1RH-01A TCGA-E9-A1RH-01A-21R-A169-07 422a4277-12f1-42ae-9f94-88d37517b9b0 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_569495.TCGA-E9-A1RH-01A-21R-A169-07.110921_UNC9-SN296_0243_BC010LABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1RH TCGA-E9-A1RH-01A TCGA-E9-A1RH-01A-21W-A185-09 648a8763-2d28-40fc-b57e-e20dfffec4c2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A1RH TCGA-E9-A1RH-10A TCGA-E9-A1RH-10A-01D-A165-02 3a8a6894-303f-486a-ac18-6826b8caf1c6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A1RH TCGA-E9-A1RH-10A TCGA-E9-A1RH-10A-01D-A166-01 2d17ea94-a6f0-4371-99bc-5a3a7da14ace Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A1RH TCGA-E9-A1RH-10A TCGA-E9-A1RH-10A-01D-A166-01 2d17ea94-a6f0-4371-99bc-5a3a7da14ace SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B05_802402.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-E9-A1RH TCGA-E9-A1RH-10A TCGA-E9-A1RH-10A-01D-A166-01 2d17ea94-a6f0-4371-99bc-5a3a7da14ace SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B05_802402.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A1RH TCGA-E9-A1RH-10A TCGA-E9-A1RH-10A-01D-A166-01 2d17ea94-a6f0-4371-99bc-5a3a7da14ace SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B05_802402.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A1RH TCGA-E9-A1RH-10A TCGA-E9-A1RH-10A-01D-A166-01 2d17ea94-a6f0-4371-99bc-5a3a7da14ace SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B05_802402.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A1RH TCGA-E9-A1RH-10A TCGA-E9-A1RH-10A-01D-A166-01 2d17ea94-a6f0-4371-99bc-5a3a7da14ace SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B05_802402.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A1RH TCGA-E9-A1RH-10A TCGA-E9-A1RH-10A-01D-A166-01 2d17ea94-a6f0-4371-99bc-5a3a7da14ace SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B05_802402.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-E9-A1RH TCGA-E9-A1RH-10A TCGA-E9-A1RH-10A-01D-A167-09 eb6b01e0-150f-4c06-81a8-bd7df58aa879 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A1RH TCGA-E9-A1RH-10A TCGA-E9-A1RH-10A-01W-A185-09 8e829a1b-e544-4764-aeaa-ca0bebc47dba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A1RH TCGA-E9-A1RH-11A TCGA-E9-A1RH-11A-34D-A16A-05 1ad1191d-97fb-4adf-92b7-46ea7209f64a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A1RH TCGA-E9-A1RH-11A TCGA-E9-A1RH-11A-34D-A16A-05 1ad1191d-97fb-4adf-92b7-46ea7209f64a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833134_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-E9-A1RH TCGA-E9-A1RH-11A TCGA-E9-A1RH-11A-34D-A16A-05 1ad1191d-97fb-4adf-92b7-46ea7209f64a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833134_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-E9-A1RH TCGA-E9-A1RH-11A TCGA-E9-A1RH-11A-34D-A16A-05 1ad1191d-97fb-4adf-92b7-46ea7209f64a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-2.TCGA-E9-A1RH-11A-34D-A16A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0 142 07-NOV-11 04.58.21.556000000 PM TCGA-E9-A1RH TCGA-E9-A1RH-11A TCGA-E9-A1RH-11A-34D-A16A-05 1ad1191d-97fb-4adf-92b7-46ea7209f64a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-3.TCGA-E9-A1RH-11A-34D-A16A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0 142 07-NOV-11 06.37.11.245000000 PM TCGA-E9-A1RH TCGA-E9-A1RH-11A TCGA-E9-A1RH-11A-34R-A168-13 9719354b-33d6-424e-842c-2bc48adac2dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A1RH TCGA-E9-A1RH-11A TCGA-E9-A1RH-11A-34R-A168-13 9719354b-33d6-424e-842c-2bc48adac2dc miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1RH-11A-34R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1RH TCGA-E9-A1RH-11A TCGA-E9-A1RH-11A-34R-A168-13 9719354b-33d6-424e-842c-2bc48adac2dc miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A1RH-11A-34R-A168-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A1RH TCGA-E9-A1RH-11A TCGA-E9-A1RH-11A-34R-A169-07 6574e15e-7e1f-4dca-899e-56e911f27848 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A1RH TCGA-E9-A1RH-11A TCGA-E9-A1RH-11A-34R-A169-07 6574e15e-7e1f-4dca-899e-56e911f27848 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_843849.TCGA-E9-A1RH-11A-34R-A169-07.110921_UNC9-SN296_0243_BC010LABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1RH TCGA-E9-A1RH-11A TCGA-E9-A1RH-11A-34R-A169-07 6574e15e-7e1f-4dca-899e-56e911f27848 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_843862.TCGA-E9-A1RH-11A-34R-A169-07.110921_UNC9-SN296_0243_BC010LABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1RH TCGA-E9-A1RH-11A TCGA-E9-A1RH-11A-34R-A169-07 6574e15e-7e1f-4dca-899e-56e911f27848 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_843890.TCGA-E9-A1RH-11A-34R-A169-07.110921_UNC9-SN296_0243_BC010LABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A1RI TCGA-E9-A1RI-01A TCGA-E9-A1RI-01A-11D-A165-02 7c05e79e-020b-4dcb-bae6-8e18b5de6dc9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A1RI TCGA-E9-A1RI-01A TCGA-E9-A1RI-01A-11D-A166-01 815c2a7a-a33b-4899-a2aa-df187eccf1bd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A1RI TCGA-E9-A1RI-01A TCGA-E9-A1RI-01A-11D-A166-01 815c2a7a-a33b-4899-a2aa-df187eccf1bd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D06_802370.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-E9-A1RI TCGA-E9-A1RI-01A TCGA-E9-A1RI-01A-11D-A166-01 815c2a7a-a33b-4899-a2aa-df187eccf1bd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D06_802370.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A1RI TCGA-E9-A1RI-01A TCGA-E9-A1RI-01A-11D-A166-01 815c2a7a-a33b-4899-a2aa-df187eccf1bd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D06_802370.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A1RI TCGA-E9-A1RI-01A TCGA-E9-A1RI-01A-11D-A166-01 815c2a7a-a33b-4899-a2aa-df187eccf1bd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D06_802370.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A1RI TCGA-E9-A1RI-01A TCGA-E9-A1RI-01A-11D-A166-01 815c2a7a-a33b-4899-a2aa-df187eccf1bd SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-2.TCGA-E9-A1RI-01A-11D-A16A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0 142 07-NOV-11 04.58.21.556000000 PM TCGA-E9-A1RI TCGA-E9-A1RI-01A TCGA-E9-A1RI-01A-11D-A16A-05 01e89317-68cc-49b0-88ac-ad994a9084c3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-3.TCGA-E9-A1RI-01A-11D-A16A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0 142 07-NOV-11 06.37.11.245000000 PM TCGA-E9-A1RI TCGA-E9-A1RI-01A TCGA-E9-A1RI-01A-11R-A168-13 3b4fbb05-facd-4dae-8fae-422a48fef2ee Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A1RI TCGA-E9-A1RI-10A TCGA-E9-A1RI-10A-01D-A166-01 c6647112-7dbe-4f90-97f3-a00e6c69bbf4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A1RI.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A1RI TCGA-E9-A1RI-10A TCGA-E9-A1RI-10A-01D-A166-01 c6647112-7dbe-4f90-97f3-a00e6c69bbf4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D08_802352.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-E9-A1RI TCGA-E9-A1RI-10A TCGA-E9-A1RI-10A-01D-A166-01 c6647112-7dbe-4f90-97f3-a00e6c69bbf4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D08_802352.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A1RI TCGA-E9-A1RI-10A TCGA-E9-A1RI-10A-01D-A166-01 c6647112-7dbe-4f90-97f3-a00e6c69bbf4 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A226.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A226 TCGA-E9-A226-10A TCGA-E9-A226-10A-01D-A159-09 9636c488-836e-43f1-a9c4-4fbcf7d704fc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A226.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A226 TCGA-E9-A226-10A TCGA-E9-A226-10A-01D-A160-01 f0ee6fce-bbb2-4e50-988c-13390ca18947 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A226.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A226 TCGA-E9-A226-10A TCGA-E9-A226-10A-01D-A160-01 f0ee6fce-bbb2-4e50-988c-13390ca18947 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H06_787574.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-E9-A226 TCGA-E9-A226-10A TCGA-E9-A226-10A-01D-A160-01 f0ee6fce-bbb2-4e50-988c-13390ca18947 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H06_787574.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A226 TCGA-E9-A226-10A TCGA-E9-A226-10A-01D-A160-01 f0ee6fce-bbb2-4e50-988c-13390ca18947 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H06_787574.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A226 TCGA-E9-A226-10A TCGA-E9-A226-10A-01D-A160-01 f0ee6fce-bbb2-4e50-988c-13390ca18947 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H06_787574.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A226 TCGA-E9-A226-10A TCGA-E9-A226-10A-01D-A160-01 f0ee6fce-bbb2-4e50-988c-13390ca18947 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H06_787574.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A226 TCGA-E9-A226-10A TCGA-E9-A226-10A-01D-A160-01 f0ee6fce-bbb2-4e50-988c-13390ca18947 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H06_787574.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A226 TCGA-E9-A226-10A TCGA-E9-A226-10A-01D-A160-01 f0ee6fce-bbb2-4e50-988c-13390ca18947 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H06_787574.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A226 TCGA-E9-A226-10A TCGA-E9-A226-10A-01D-A160-01 f0ee6fce-bbb2-4e50-988c-13390ca18947 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H06_787574.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0 136 07-DEC-11 01.00.02.682000000 PM TCGA-E9-A226 TCGA-E9-A226-10A TCGA-E9-A226-10A-01W-A16L-09 7c7409b5-4c7d-4d83-9949-f36e5b333bd1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A226.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A227 TCGA-E9-A227-01A TCGA-E9-A227-01A-11D-A158-02 e2494480-6ac7-4eda-97e0-a86346eaec5a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A227.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A227 TCGA-E9-A227-01A TCGA-E9-A227-01A-11D-A159-09 15eb25c4-f4a7-446e-b654-ae39ccd2cf00 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A227.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A227 TCGA-E9-A227-01A TCGA-E9-A227-01A-11D-A160-01 3e648342-a21d-4c25-8e1f-1c1dda9b543f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A227.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A227 TCGA-E9-A227-01A TCGA-E9-A227-01A-11D-A160-01 3e648342-a21d-4c25-8e1f-1c1dda9b543f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D11_787542.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-E9-A227 TCGA-E9-A227-01A TCGA-E9-A227-01A-11D-A160-01 3e648342-a21d-4c25-8e1f-1c1dda9b543f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D11_787542.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A227 TCGA-E9-A227-01A TCGA-E9-A227-01A-11D-A160-01 3e648342-a21d-4c25-8e1f-1c1dda9b543f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D11_787542.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A227 TCGA-E9-A227-01A TCGA-E9-A227-01A-11D-A160-01 3e648342-a21d-4c25-8e1f-1c1dda9b543f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D11_787542.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A227 TCGA-E9-A227-01A TCGA-E9-A227-01A-11D-A160-01 3e648342-a21d-4c25-8e1f-1c1dda9b543f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D11_787542.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A227 TCGA-E9-A227-01A TCGA-E9-A227-01A-11D-A160-01 3e648342-a21d-4c25-8e1f-1c1dda9b543f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D11_787542.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A227 TCGA-E9-A227-01A TCGA-E9-A227-01A-11D-A160-01 3e648342-a21d-4c25-8e1f-1c1dda9b543f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D11_787542.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A227 TCGA-E9-A227-01A TCGA-E9-A227-01A-11D-A160-01 3e648342-a21d-4c25-8e1f-1c1dda9b543f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D11_787542.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0 136 07-DEC-11 01.00.02.682000000 PM TCGA-E9-A227 TCGA-E9-A227-01A TCGA-E9-A227-01A-11D-A161-05 da3d0f13-ae2b-4c5c-82d2-af936d013ed9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A227.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A227 TCGA-E9-A227-01A TCGA-E9-A227-01A-11D-A161-05 da3d0f13-ae2b-4c5c-82d2-af936d013ed9 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-2.TCGA-E9-A227-01A-11D-A161-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0 136 07-NOV-11 04.57.19.359000000 PM TCGA-E9-A227 TCGA-E9-A227-01A TCGA-E9-A227-01A-11D-A161-05 da3d0f13-ae2b-4c5c-82d2-af936d013ed9 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-3.TCGA-E9-A227-01A-11D-A161-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0 136 07-NOV-11 05.36.48.633000000 PM TCGA-E9-A227 TCGA-E9-A227-01A TCGA-E9-A227-01A-11D-A17G-09 ef7e625e-a94a-4d5d-bd72-bb56f33c694d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A227.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A227 TCGA-E9-A227-01A TCGA-E9-A227-01A-11R-A156-13 a10bebc0-65ad-41ac-b1e8-17ecdce399f5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A227.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A227 TCGA-E9-A227-01A TCGA-E9-A227-01A-11R-A156-13 a10bebc0-65ad-41ac-b1e8-17ecdce399f5 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A227-01A-11R-A156-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A227 TCGA-E9-A227-01A TCGA-E9-A227-01A-11R-A156-13 a10bebc0-65ad-41ac-b1e8-17ecdce399f5 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A227-01A-11R-A156-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A227 TCGA-E9-A227-01A TCGA-E9-A227-01A-11R-A157-07 2f315234-dee1-4f36-b7dc-72280c219a1c Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A227.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A227 TCGA-E9-A227-10A TCGA-E9-A227-10A-01D-A158-02 e605421c-9c32-4630-887b-fe248081ecb4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A227.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A227 TCGA-E9-A227-10A TCGA-E9-A227-10A-01D-A159-09 1f80b7f1-4b76-4815-9cc7-05318f7fa529 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A227.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A227 TCGA-E9-A227-10A TCGA-E9-A227-10A-01D-A160-01 1a26c0f8-882e-4afa-a297-d3837d8a5dda Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A227.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A227 TCGA-E9-A227-10A TCGA-E9-A227-10A-01D-A160-01 1a26c0f8-882e-4afa-a297-d3837d8a5dda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D12_787540.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-E9-A227 TCGA-E9-A227-10A TCGA-E9-A227-10A-01D-A160-01 1a26c0f8-882e-4afa-a297-d3837d8a5dda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D12_787540.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A227 TCGA-E9-A227-10A TCGA-E9-A227-10A-01D-A160-01 1a26c0f8-882e-4afa-a297-d3837d8a5dda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D12_787540.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A227 TCGA-E9-A227-10A TCGA-E9-A227-10A-01D-A160-01 1a26c0f8-882e-4afa-a297-d3837d8a5dda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D12_787540.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A227 TCGA-E9-A227-10A TCGA-E9-A227-10A-01D-A160-01 1a26c0f8-882e-4afa-a297-d3837d8a5dda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D12_787540.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A227 TCGA-E9-A227-10A TCGA-E9-A227-10A-01D-A160-01 1a26c0f8-882e-4afa-a297-d3837d8a5dda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D12_787540.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A227 TCGA-E9-A227-10A TCGA-E9-A227-10A-01D-A160-01 1a26c0f8-882e-4afa-a297-d3837d8a5dda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D12_787540.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A227 TCGA-E9-A227-10A TCGA-E9-A227-10A-01D-A160-01 1a26c0f8-882e-4afa-a297-d3837d8a5dda SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D12_787540.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0 136 07-DEC-11 01.00.02.682000000 PM TCGA-E9-A227 TCGA-E9-A227-10A TCGA-E9-A227-10A-01D-A17G-09 62eb2f07-dd27-4150-8dff-1b6a08036267 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A227.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A227 TCGA-E9-A227-10A TCGA-E9-A227-10A-01W-A16L-09 f855e01a-19ea-4e33-98db-c52beff35242 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A227.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A228 TCGA-E9-A228-01A TCGA-E9-A228-01A-31D-A158-02 e138e66b-38fb-4ef0-930d-662ffa640c06 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A228.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A228 TCGA-E9-A228-01A TCGA-E9-A228-01A-31D-A159-09 4a804a8d-7dc8-4b5b-9537-b7f8f7133bda Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A228.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A228 TCGA-E9-A228-01A TCGA-E9-A228-01A-31D-A160-01 6e3c544e-9a1d-431d-8775-cbbd41de89c2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A228.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A228 TCGA-E9-A228-01A TCGA-E9-A228-01A-31D-A160-01 6e3c544e-9a1d-431d-8775-cbbd41de89c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B04_787456.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-E9-A228 TCGA-E9-A228-01A TCGA-E9-A228-01A-31D-A160-01 6e3c544e-9a1d-431d-8775-cbbd41de89c2 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B04_787456.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A228 TCGA-E9-A228-01A TCGA-E9-A228-01A-31D-A160-01 6e3c544e-9a1d-431d-8775-cbbd41de89c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B04_787456.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A228 TCGA-E9-A228-01A TCGA-E9-A228-01A-31D-A160-01 6e3c544e-9a1d-431d-8775-cbbd41de89c2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B04_787456.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0 136 07-DEC-11 01.00.02.682000000 PM TCGA-E9-A228 TCGA-E9-A228-01A TCGA-E9-A228-01A-31D-A161-05 9948a5e3-1343-410a-bbe4-de5c7f24a9bf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A228.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A228 TCGA-E9-A228-01A TCGA-E9-A228-01A-31D-A161-05 9948a5e3-1343-410a-bbe4-de5c7f24a9bf DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-2.TCGA-E9-A228-01A-31D-A161-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0 136 07-NOV-11 04.57.19.359000000 PM TCGA-E9-A228 TCGA-E9-A228-01A TCGA-E9-A228-01A-31D-A161-05 9948a5e3-1343-410a-bbe4-de5c7f24a9bf DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-3.TCGA-E9-A228-01A-31D-A161-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0 136 07-NOV-11 05.36.48.633000000 PM TCGA-E9-A228 TCGA-E9-A228-01A TCGA-E9-A228-01A-31D-A17G-09 0c48a734-314a-405e-b2dd-db402afc74f3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A228.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A228 TCGA-E9-A228-01A TCGA-E9-A228-01A-31R-A156-13 516b20ec-5109-4b6f-ae1a-a641c8f5ba53 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A228.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A228 TCGA-E9-A228-01A TCGA-E9-A228-01A-31R-A156-13 516b20ec-5109-4b6f-ae1a-a641c8f5ba53 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A228-01A-31R-A156-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A228 TCGA-E9-A228-01A TCGA-E9-A228-01A-31R-A156-13 516b20ec-5109-4b6f-ae1a-a641c8f5ba53 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A228-01A-31R-A156-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A228 TCGA-E9-A228-01A TCGA-E9-A228-01A-31R-A157-07 5903d969-2fd6-4952-b475-a79e6c241efd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A228.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A228 TCGA-E9-A228-01A TCGA-E9-A228-01A-31R-A157-07 5903d969-2fd6-4952-b475-a79e6c241efd RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_489936.TCGA-E9-A228-01A-31R-A157-07.110912_UNC15-SN850_0122_BC004VABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A228 TCGA-E9-A228-01A TCGA-E9-A228-01A-31R-A157-07 5903d969-2fd6-4952-b475-a79e6c241efd RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_490015.TCGA-E9-A228-01A-31R-A157-07.110912_UNC15-SN850_0122_BC004VABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A228 TCGA-E9-A228-01A TCGA-E9-A228-01A-31R-A157-07 5903d969-2fd6-4952-b475-a79e6c241efd RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_490061.TCGA-E9-A228-01A-31R-A157-07.110912_UNC15-SN850_0122_BC004VABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A228 TCGA-E9-A228-01A TCGA-E9-A228-01A-31W-A16L-09 774589e1-dd10-4319-9f08-1137fef9b623 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A228.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A228 TCGA-E9-A228-10A TCGA-E9-A228-10A-01D-A158-02 2e8fc962-86b0-4e74-8a2e-36aaf010dd3c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A228.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A228 TCGA-E9-A228-10A TCGA-E9-A228-10A-01D-A159-09 c618a148-78cb-425d-b026-e2f1c10773bd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A228.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A228 TCGA-E9-A228-10A TCGA-E9-A228-10A-01D-A160-01 014e64a6-e34a-4f1d-ba2c-b255ff426dc2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A228.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A228 TCGA-E9-A228-10A TCGA-E9-A228-10A-01D-A160-01 014e64a6-e34a-4f1d-ba2c-b255ff426dc2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B06_787606.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-E9-A228 TCGA-E9-A228-10A TCGA-E9-A228-10A-01D-A160-01 014e64a6-e34a-4f1d-ba2c-b255ff426dc2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B06_787606.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A228 TCGA-E9-A228-10A TCGA-E9-A228-10A-01D-A160-01 014e64a6-e34a-4f1d-ba2c-b255ff426dc2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B06_787606.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A228 TCGA-E9-A228-10A TCGA-E9-A228-10A-01D-A160-01 014e64a6-e34a-4f1d-ba2c-b255ff426dc2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B06_787606.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A228 TCGA-E9-A228-10A TCGA-E9-A228-10A-01D-A160-01 014e64a6-e34a-4f1d-ba2c-b255ff426dc2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B06_787606.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A228 TCGA-E9-A228-10A TCGA-E9-A228-10A-01D-A160-01 014e64a6-e34a-4f1d-ba2c-b255ff426dc2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B06_787606.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A228 TCGA-E9-A228-10A TCGA-E9-A228-10A-01D-A160-01 014e64a6-e34a-4f1d-ba2c-b255ff426dc2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B06_787606.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A228 TCGA-E9-A228-10A TCGA-E9-A228-10A-01D-A160-01 014e64a6-e34a-4f1d-ba2c-b255ff426dc2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B06_787606.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0 136 07-DEC-11 01.00.02.682000000 PM TCGA-E9-A228 TCGA-E9-A228-10A TCGA-E9-A228-10A-01W-A16L-09 4e495f51-1cdc-4d9a-a79e-35ade2a334d2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A228.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A229 TCGA-E9-A229-01A TCGA-E9-A229-01A-31D-A158-02 1c12b74f-9070-4708-b564-9d0e27b06d36 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A229.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A229 TCGA-E9-A229-01A TCGA-E9-A229-01A-31D-A159-09 7c0e7d5f-2798-470b-963e-a1dd75cca0d3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A229.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A229 TCGA-E9-A229-01A TCGA-E9-A229-01A-31D-A160-01 b56e8eb4-5efb-4f29-bee6-da6e61aa44a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A229.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A229 TCGA-E9-A229-01A TCGA-E9-A229-01A-31D-A160-01 b56e8eb4-5efb-4f29-bee6-da6e61aa44a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B09_787584.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-E9-A229 TCGA-E9-A229-01A TCGA-E9-A229-01A-31D-A160-01 b56e8eb4-5efb-4f29-bee6-da6e61aa44a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B09_787584.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A229 TCGA-E9-A229-01A TCGA-E9-A229-01A-31D-A160-01 b56e8eb4-5efb-4f29-bee6-da6e61aa44a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B09_787584.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A229 TCGA-E9-A229-01A TCGA-E9-A229-01A-31D-A160-01 b56e8eb4-5efb-4f29-bee6-da6e61aa44a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B09_787584.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A229 TCGA-E9-A229-01A TCGA-E9-A229-01A-31D-A160-01 b56e8eb4-5efb-4f29-bee6-da6e61aa44a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B09_787584.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A229 TCGA-E9-A229-01A TCGA-E9-A229-01A-31D-A160-01 b56e8eb4-5efb-4f29-bee6-da6e61aa44a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B09_787584.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A229 TCGA-E9-A229-01A TCGA-E9-A229-01A-31D-A160-01 b56e8eb4-5efb-4f29-bee6-da6e61aa44a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B09_787584.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A229 TCGA-E9-A229-01A TCGA-E9-A229-01A-31D-A160-01 b56e8eb4-5efb-4f29-bee6-da6e61aa44a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_B09_787584.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0 136 07-DEC-11 01.00.02.682000000 PM TCGA-E9-A229 TCGA-E9-A229-01A TCGA-E9-A229-01A-31D-A161-05 dd6b47d3-d006-4222-98b3-a11c8ca84bf4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A229.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A229 TCGA-E9-A229-01A TCGA-E9-A229-01A-31D-A161-05 dd6b47d3-d006-4222-98b3-a11c8ca84bf4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0/6042324011_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0 136 07-NOV-11 04.13.40.962000000 PM TCGA-E9-A229 TCGA-E9-A229-01A TCGA-E9-A229-01A-31D-A161-05 dd6b47d3-d006-4222-98b3-a11c8ca84bf4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0/6042324011_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0 136 07-NOV-11 04.13.40.962000000 PM TCGA-E9-A229 TCGA-E9-A229-01A TCGA-E9-A229-01A-31D-A161-05 dd6b47d3-d006-4222-98b3-a11c8ca84bf4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-2.TCGA-E9-A229-01A-31D-A161-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0 136 07-NOV-11 04.57.19.359000000 PM TCGA-E9-A229 TCGA-E9-A229-01A TCGA-E9-A229-01A-31D-A161-05 dd6b47d3-d006-4222-98b3-a11c8ca84bf4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-3.TCGA-E9-A229-01A-31D-A161-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0 136 07-NOV-11 05.36.48.633000000 PM TCGA-E9-A229 TCGA-E9-A229-01A TCGA-E9-A229-01A-31D-A17G-09 a27fa57d-d1ad-4534-a933-0fdcc5f06a8c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A229.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A229 TCGA-E9-A229-01A TCGA-E9-A229-01A-31R-A156-13 033fc29c-b2f8-4951-a592-4f28628f8f66 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A229.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A229 TCGA-E9-A229-01A TCGA-E9-A229-01A-31R-A156-13 033fc29c-b2f8-4951-a592-4f28628f8f66 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A229-01A-31R-A156-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A229 TCGA-E9-A229-01A TCGA-E9-A229-01A-31R-A156-13 033fc29c-b2f8-4951-a592-4f28628f8f66 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A229-01A-31R-A156-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A229 TCGA-E9-A229-01A TCGA-E9-A229-01A-31R-A157-07 b956a823-b7d5-4a9e-a9d1-c66f0faf544a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A229.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A229 TCGA-E9-A229-01A TCGA-E9-A229-01A-31R-A157-07 b956a823-b7d5-4a9e-a9d1-c66f0faf544a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_490005.TCGA-E9-A229-01A-31R-A157-07.110912_UNC15-SN850_0122_BC004VABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A229 TCGA-E9-A229-01A TCGA-E9-A229-01A-31R-A157-07 b956a823-b7d5-4a9e-a9d1-c66f0faf544a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_490045.TCGA-E9-A229-01A-31R-A157-07.110912_UNC15-SN850_0122_BC004VABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A229 TCGA-E9-A229-01A TCGA-E9-A229-01A-31R-A157-07 b956a823-b7d5-4a9e-a9d1-c66f0faf544a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_490081.TCGA-E9-A229-01A-31R-A157-07.110912_UNC15-SN850_0122_BC004VABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A229 TCGA-E9-A229-01A TCGA-E9-A229-01A-31W-A16L-09 822c31a0-dda6-4bfe-936d-6aa8a2b3c18c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A229.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A229 TCGA-E9-A229-10B TCGA-E9-A229-10B-01D-A158-02 9ad29ec3-33cf-4df2-8931-811e79cecaa2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A229.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A229 TCGA-E9-A229-10B TCGA-E9-A229-10B-01D-A159-09 32df7bac-7bb4-4538-800f-893a1ab3d28c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A229.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A229 TCGA-E9-A229-10B TCGA-E9-A229-10B-01D-A160-01 7dca5c4d-e241-47e1-9bd0-2916376f95a2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A229.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A229 TCGA-E9-A229-10B TCGA-E9-A229-10B-01D-A160-01 7dca5c4d-e241-47e1-9bd0-2916376f95a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_G07_787458.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-E9-A229 TCGA-E9-A229-10B TCGA-E9-A229-10B-01D-A160-01 7dca5c4d-e241-47e1-9bd0-2916376f95a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_G07_787458.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A229 TCGA-E9-A229-10B TCGA-E9-A229-10B-01D-A160-01 7dca5c4d-e241-47e1-9bd0-2916376f95a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_G07_787458.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A229 TCGA-E9-A229-10B TCGA-E9-A229-10B-01D-A160-01 7dca5c4d-e241-47e1-9bd0-2916376f95a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_G07_787458.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A229 TCGA-E9-A229-10B TCGA-E9-A229-10B-01D-A160-01 7dca5c4d-e241-47e1-9bd0-2916376f95a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_G07_787458.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A229 TCGA-E9-A229-10B TCGA-E9-A229-10B-01D-A160-01 7dca5c4d-e241-47e1-9bd0-2916376f95a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_G07_787458.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A229 TCGA-E9-A229-10B TCGA-E9-A229-10B-01D-A160-01 7dca5c4d-e241-47e1-9bd0-2916376f95a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_G07_787458.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A229 TCGA-E9-A229-10B TCGA-E9-A229-10B-01D-A160-01 7dca5c4d-e241-47e1-9bd0-2916376f95a2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_G07_787458.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0 136 07-DEC-11 01.00.02.682000000 PM TCGA-E9-A229 TCGA-E9-A229-10B TCGA-E9-A229-10B-01D-A17G-09 70a59c4d-5c92-4362-97b2-706dbfbd4ee6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A229.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A229 TCGA-E9-A229-10B TCGA-E9-A229-10B-01W-A16L-09 0664893c-c302-479e-9524-b61e86c7c9c6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A229.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22A TCGA-E9-A22A-01A TCGA-E9-A22A-01A-11D-A158-02 f265ff20-60c6-41c8-8522-75d1a6a8b530 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22A TCGA-E9-A22A-01A TCGA-E9-A22A-01A-11D-A159-09 25bf7831-6878-4bac-b23d-e94a555b2232 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22A TCGA-E9-A22A-01A TCGA-E9-A22A-01A-11D-A160-01 3b807901-2667-4023-8210-20c0ebb5d189 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22A TCGA-E9-A22A-01A TCGA-E9-A22A-01A-11D-A160-01 3b807901-2667-4023-8210-20c0ebb5d189 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_A10_787634.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-E9-A22A TCGA-E9-A22A-10A TCGA-E9-A22A-10A-01D-A160-01 4aeb1186-dda4-4919-ae08-5d22f6b6438a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_A10_787634.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A22A TCGA-E9-A22A-10A TCGA-E9-A22A-10A-01D-A160-01 4aeb1186-dda4-4919-ae08-5d22f6b6438a SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_A10_787634.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A22A TCGA-E9-A22A-10A TCGA-E9-A22A-10A-01D-A160-01 4aeb1186-dda4-4919-ae08-5d22f6b6438a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_A10_787634.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A22A TCGA-E9-A22A-10A TCGA-E9-A22A-10A-01D-A160-01 4aeb1186-dda4-4919-ae08-5d22f6b6438a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_A10_787634.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A22A TCGA-E9-A22A-10A TCGA-E9-A22A-10A-01D-A160-01 4aeb1186-dda4-4919-ae08-5d22f6b6438a SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_A10_787634.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0 136 07-DEC-11 01.00.02.682000000 PM TCGA-E9-A22A TCGA-E9-A22A-10A TCGA-E9-A22A-10A-01W-A16L-09 aa792971-8af2-4f9b-9077-d607d792dec3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22B TCGA-E9-A22B-01A TCGA-E9-A22B-01A-11D-A158-02 7bfa7ebd-7737-49bf-9393-5a296a1e71e5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22B TCGA-E9-A22B-01A TCGA-E9-A22B-01A-11D-A159-09 e46a5d19-2dd7-4c34-8fff-6276278c58b3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22B TCGA-E9-A22B-01A TCGA-E9-A22B-01A-11D-A160-01 260ee6fb-7c05-41d7-93c4-8c5c5e40f5ff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22B TCGA-E9-A22B-01A TCGA-E9-A22B-01A-11D-A160-01 260ee6fb-7c05-41d7-93c4-8c5c5e40f5ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D03_787592.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-E9-A22B TCGA-E9-A22B-01A TCGA-E9-A22B-01A-11D-A160-01 260ee6fb-7c05-41d7-93c4-8c5c5e40f5ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D03_787592.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A22B TCGA-E9-A22B-01A TCGA-E9-A22B-01A-11D-A160-01 260ee6fb-7c05-41d7-93c4-8c5c5e40f5ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D03_787592.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A22B TCGA-E9-A22B-01A TCGA-E9-A22B-01A-11D-A160-01 260ee6fb-7c05-41d7-93c4-8c5c5e40f5ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D03_787592.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A22B TCGA-E9-A22B-01A TCGA-E9-A22B-01A-11D-A160-01 260ee6fb-7c05-41d7-93c4-8c5c5e40f5ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D03_787592.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A22B TCGA-E9-A22B-01A TCGA-E9-A22B-01A-11D-A160-01 260ee6fb-7c05-41d7-93c4-8c5c5e40f5ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D03_787592.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A22B TCGA-E9-A22B-01A TCGA-E9-A22B-01A-11D-A160-01 260ee6fb-7c05-41d7-93c4-8c5c5e40f5ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D03_787592.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A22B TCGA-E9-A22B-01A TCGA-E9-A22B-01A-11D-A160-01 260ee6fb-7c05-41d7-93c4-8c5c5e40f5ff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D03_787592.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0 136 07-DEC-11 01.00.02.682000000 PM TCGA-E9-A22B TCGA-E9-A22B-01A TCGA-E9-A22B-01A-11D-A161-05 8e398184-12ef-4870-97a1-9b18532cabc4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22B TCGA-E9-A22B-01A TCGA-E9-A22B-01A-11D-A161-05 8e398184-12ef-4870-97a1-9b18532cabc4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0/6042316157_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0 136 07-NOV-11 04.13.40.962000000 PM TCGA-E9-A22B TCGA-E9-A22B-01A TCGA-E9-A22B-01A-11D-A161-05 8e398184-12ef-4870-97a1-9b18532cabc4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0/6042316157_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0 136 07-NOV-11 04.13.40.962000000 PM TCGA-E9-A22B TCGA-E9-A22B-01A TCGA-E9-A22B-01A-11D-A161-05 8e398184-12ef-4870-97a1-9b18532cabc4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-2.TCGA-E9-A22B-01A-11D-A161-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0 136 07-NOV-11 04.57.19.359000000 PM TCGA-E9-A22B TCGA-E9-A22B-01A TCGA-E9-A22B-01A-11D-A161-05 8e398184-12ef-4870-97a1-9b18532cabc4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-3.TCGA-E9-A22B-01A-11D-A161-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0 136 07-NOV-11 05.36.48.633000000 PM TCGA-E9-A22B TCGA-E9-A22B-01A TCGA-E9-A22B-01A-11D-A17G-09 f9a39901-a063-464e-b85e-3b5992805662 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22B TCGA-E9-A22B-01A TCGA-E9-A22B-01A-11R-A156-13 7d9f5a09-d648-4315-aa5d-b04e6f556a18 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22B TCGA-E9-A22B-01A TCGA-E9-A22B-01A-11R-A156-13 7d9f5a09-d648-4315-aa5d-b04e6f556a18 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A22B-01A-11R-A156-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A22B TCGA-E9-A22B-01A TCGA-E9-A22B-01A-11R-A156-13 7d9f5a09-d648-4315-aa5d-b04e6f556a18 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A22B-01A-11R-A156-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A22B TCGA-E9-A22B-01A TCGA-E9-A22B-01A-11R-A157-07 f563bc24-00d1-4637-a073-87744ed7311a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22B TCGA-E9-A22B-01A TCGA-E9-A22B-01A-11R-A157-07 f563bc24-00d1-4637-a073-87744ed7311a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_502189.TCGA-E9-A22B-01A-11R-A157-07.110907_UNC13-SN749_0110_AB00RJABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A22B TCGA-E9-A22B-01A TCGA-E9-A22B-01A-11R-A157-07 f563bc24-00d1-4637-a073-87744ed7311a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_502200.TCGA-E9-A22B-01A-11R-A157-07.110907_UNC13-SN749_0110_AB00RJABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A22B TCGA-E9-A22B-01A TCGA-E9-A22B-01A-11R-A157-07 f563bc24-00d1-4637-a073-87744ed7311a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_502259.TCGA-E9-A22B-01A-11R-A157-07.110907_UNC13-SN749_0110_AB00RJABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A22B TCGA-E9-A22B-01A TCGA-E9-A22B-01A-11W-A16L-09 4795dd4e-410c-40a5-8746-4ff55422fc0a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22B TCGA-E9-A22B-10A TCGA-E9-A22B-10A-01D-A158-02 7d7472fe-5e92-45b6-88b9-bf243c426a72 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22B TCGA-E9-A22B-10A TCGA-E9-A22B-10A-01D-A159-09 f948182a-f814-4e3c-83ee-82b78aa423c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22B TCGA-E9-A22B-10A TCGA-E9-A22B-10A-01D-A160-01 d1f36dac-2f22-4798-8205-da005ae696c6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22B.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22B TCGA-E9-A22B-10A TCGA-E9-A22B-10A-01D-A160-01 d1f36dac-2f22-4798-8205-da005ae696c6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_F06_787604.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-E9-A22B TCGA-E9-A22B-10A TCGA-E9-A22B-10A-01D-A160-01 d1f36dac-2f22-4798-8205-da005ae696c6 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22E.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22E TCGA-E9-A22E-10A TCGA-E9-A22E-10A-01D-A160-01 c8ee1cc7-c39c-445c-a9d3-2177b1db82a8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_G02_787526.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-E9-A22E TCGA-E9-A22E-10A TCGA-E9-A22E-10A-01D-A160-01 c8ee1cc7-c39c-445c-a9d3-2177b1db82a8 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D09_787468.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A22G TCGA-E9-A22G-01A TCGA-E9-A22G-01A-11D-A160-01 3c37bf85-6a5c-4fe9-9c42-5ebd7b27d23f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_D09_787468.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0 136 07-DEC-11 01.00.02.682000000 PM TCGA-E9-A22G TCGA-E9-A22G-01A TCGA-E9-A22G-01A-11D-A161-05 b5759e8f-2f10-4d79-9529-29a12e9c9ea0 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-3.TCGA-E9-A22G-01A-11D-A161-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0 136 07-NOV-11 05.36.48.633000000 PM TCGA-E9-A22G TCGA-E9-A22G-01A TCGA-E9-A22G-01A-11R-A156-13 2af2ebbf-5211-44e0-abcf-a1c7ebd10f48 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22G TCGA-E9-A22G-01A TCGA-E9-A22G-01A-11R-A156-13 2af2ebbf-5211-44e0-abcf-a1c7ebd10f48 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22G TCGA-E9-A22G-10A TCGA-E9-A22G-10A-01D-A160-01 9958d847-99d9-4734-a229-c0edf3caab3c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22G.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22G TCGA-E9-A22G-10A TCGA-E9-A22G-10A-01D-A160-01 9958d847-99d9-4734-a229-c0edf3caab3c SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H07_787538.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-E9-A22H TCGA-E9-A22H-01A TCGA-E9-A22H-01A-11D-A160-01 80737d22-494c-491b-82de-4e3ab2f693ef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H07_787538.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A22H TCGA-E9-A22H-01A TCGA-E9-A22H-01A-11D-A160-01 80737d22-494c-491b-82de-4e3ab2f693ef SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H07_787538.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A22H TCGA-E9-A22H-01A TCGA-E9-A22H-01A-11D-A160-01 80737d22-494c-491b-82de-4e3ab2f693ef SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H07_787538.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0 136 07-DEC-11 01.00.02.682000000 PM TCGA-E9-A22H TCGA-E9-A22H-01A TCGA-E9-A22H-01A-11D-A161-05 3c34d92c-66a4-4902-894d-8ac8b5fe0697 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22H TCGA-E9-A22H-01A TCGA-E9-A22H-01A-11D-A161-05 3c34d92c-66a4-4902-894d-8ac8b5fe0697 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0/6042324005_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0 136 07-NOV-11 04.13.40.962000000 PM TCGA-E9-A22H TCGA-E9-A22H-01A TCGA-E9-A22H-01A-11D-A161-05 3c34d92c-66a4-4902-894d-8ac8b5fe0697 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0/6042324005_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.13.1.0 136 07-NOV-11 04.13.40.962000000 PM TCGA-E9-A22H TCGA-E9-A22H-01A TCGA-E9-A22H-01A-11D-A161-05 3c34d92c-66a4-4902-894d-8ac8b5fe0697 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-2.TCGA-E9-A22H-01A-11D-A161-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.13.1.0 136 07-NOV-11 04.57.19.359000000 PM TCGA-E9-A22H TCGA-E9-A22H-01A TCGA-E9-A22H-01A-11D-A161-05 3c34d92c-66a4-4902-894d-8ac8b5fe0697 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0/jhu-usc.edu_BRCA.HumanMethylation450.13.lvl-3.TCGA-E9-A22H-01A-11D-A161-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.13.1.0 136 07-NOV-11 05.36.48.633000000 PM TCGA-E9-A22H TCGA-E9-A22H-01A TCGA-E9-A22H-01A-11D-A17G-09 00a592bc-59d0-4972-bb9a-a539d8081d7d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22H TCGA-E9-A22H-01A TCGA-E9-A22H-01A-11R-A156-13 122b75fa-0fc4-4131-85e9-1649a2652d73 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22H TCGA-E9-A22H-01A TCGA-E9-A22H-01A-11R-A156-13 122b75fa-0fc4-4131-85e9-1649a2652d73 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A22H-01A-11R-A156-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A22H TCGA-E9-A22H-01A TCGA-E9-A22H-01A-11R-A156-13 122b75fa-0fc4-4131-85e9-1649a2652d73 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A22H-01A-11R-A156-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 136 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A22H TCGA-E9-A22H-01A TCGA-E9-A22H-01A-11R-A157-07 c388d3be-37d9-4377-8c85-f6124b2ad436 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22H TCGA-E9-A22H-01A TCGA-E9-A22H-01A-11R-A157-07 c388d3be-37d9-4377-8c85-f6124b2ad436 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_502194.TCGA-E9-A22H-01A-11R-A157-07.110907_UNC13-SN749_0110_AB00RJABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A22H TCGA-E9-A22H-01A TCGA-E9-A22H-01A-11R-A157-07 c388d3be-37d9-4377-8c85-f6124b2ad436 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_502202.TCGA-E9-A22H-01A-11R-A157-07.110907_UNC13-SN749_0110_AB00RJABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A22H TCGA-E9-A22H-01A TCGA-E9-A22H-01A-11R-A157-07 c388d3be-37d9-4377-8c85-f6124b2ad436 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_502247.TCGA-E9-A22H-01A-11R-A157-07.110907_UNC13-SN749_0110_AB00RJABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 136 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A22H TCGA-E9-A22H-01A TCGA-E9-A22H-01A-11W-A16L-09 7d84f385-f326-4ca8-89fd-72d5f4c36f03 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22H TCGA-E9-A22H-10A TCGA-E9-A22H-10A-01D-A158-02 c0e8b8c8-988e-44f4-92da-0aee899a05b4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22H TCGA-E9-A22H-10A TCGA-E9-A22H-10A-01D-A159-09 68c5cc36-dd0a-4014-afde-01365078bfaa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22H TCGA-E9-A22H-10A TCGA-E9-A22H-10A-01D-A160-01 4356c8b9-3138-4c75-ad22-b7e6e8097b4c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22H TCGA-E9-A22H-10A TCGA-E9-A22H-10A-01D-A160-01 4356c8b9-3138-4c75-ad22-b7e6e8097b4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H09_787602.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.136.1008.0 136 07-DEC-11 11.20.27.412000000 AM TCGA-E9-A22H TCGA-E9-A22H-10A TCGA-E9-A22H-10A-01D-A160-01 4356c8b9-3138-4c75-ad22-b7e6e8097b4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H09_787602.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A22H TCGA-E9-A22H-10A TCGA-E9-A22H-10A-01D-A160-01 4356c8b9-3138-4c75-ad22-b7e6e8097b4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H09_787602.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A22H TCGA-E9-A22H-10A TCGA-E9-A22H-10A-01D-A160-01 4356c8b9-3138-4c75-ad22-b7e6e8097b4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H09_787602.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A22H TCGA-E9-A22H-10A TCGA-E9-A22H-10A-01D-A160-01 4356c8b9-3138-4c75-ad22-b7e6e8097b4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H09_787602.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A22H TCGA-E9-A22H-10A TCGA-E9-A22H-10A-01D-A160-01 4356c8b9-3138-4c75-ad22-b7e6e8097b4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H09_787602.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A22H TCGA-E9-A22H-10A TCGA-E9-A22H-10A-01D-A160-01 4356c8b9-3138-4c75-ad22-b7e6e8097b4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H09_787602.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.136.1008.0 136 07-DEC-11 11.58.15.435000000 AM TCGA-E9-A22H TCGA-E9-A22H-10A TCGA-E9-A22H-10A-01D-A160-01 4356c8b9-3138-4c75-ad22-b7e6e8097b4c SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0/USAGE_p_TCGA_132_133_136_SNP_N_GenomeWideSNP_6_H09_787602.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.136.1008.0 136 07-DEC-11 01.00.02.682000000 PM TCGA-E9-A22H TCGA-E9-A22H-10A TCGA-E9-A22H-10A-01D-A17G-09 7e563645-d8f4-4f6d-b382-2919b7e76d36 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A22H TCGA-E9-A22H-10A TCGA-E9-A22H-10A-01W-A16L-09 7fd5c643-41cc-41a9-b3a5-b040aead38f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.136.12.0/nationwidechildrens.org_biospecimen.TCGA-E9-A22H.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.136.12.0 136 05-JAN-12 09.39.50.890000000 PM TCGA-E9-A243 TCGA-E9-A243-01A TCGA-E9-A243-01A-21D-A165-02 2b516307-7201-4252-a19d-3c34f384a045 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A243.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A243 TCGA-E9-A243-01A TCGA-E9-A243-01A-21D-A166-01 2a67b3a1-4ab0-43ee-9630-8532d0f56b5d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A243.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A243 TCGA-E9-A243-01A TCGA-E9-A243-01A-21D-A166-01 2a67b3a1-4ab0-43ee-9630-8532d0f56b5d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D10_802454.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-E9-A243 TCGA-E9-A243-01A TCGA-E9-A243-01A-21D-A166-01 2a67b3a1-4ab0-43ee-9630-8532d0f56b5d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D10_802454.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A243 TCGA-E9-A243-01A TCGA-E9-A243-01A-21D-A166-01 2a67b3a1-4ab0-43ee-9630-8532d0f56b5d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_D10_802454.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A243 TCGA-E9-A243-01A TCGA-E9-A243-01A-21D-A166-01 2a67b3a1-4ab0-43ee-9630-8532d0f56b5d SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A243.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A243 TCGA-E9-A243-01A TCGA-E9-A243-01A-21D-A16A-05 b786cc3a-384e-4dea-8328-4768e117f3e8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833142_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-E9-A243 TCGA-E9-A243-01A TCGA-E9-A243-01A-21D-A16A-05 b786cc3a-384e-4dea-8328-4768e117f3e8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833142_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-E9-A243 TCGA-E9-A243-01A TCGA-E9-A243-01A-21D-A16A-05 b786cc3a-384e-4dea-8328-4768e117f3e8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-2.TCGA-E9-A243-01A-21D-A16A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0 142 07-NOV-11 04.58.21.556000000 PM TCGA-E9-A243 TCGA-E9-A243-01A TCGA-E9-A243-01A-21D-A16A-05 b786cc3a-384e-4dea-8328-4768e117f3e8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-3.TCGA-E9-A243-01A-21D-A16A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0 142 07-NOV-11 06.37.11.245000000 PM TCGA-E9-A243 TCGA-E9-A243-01A TCGA-E9-A243-01A-21R-A168-13 145ffd55-8265-4322-9e92-1a382c2eab7a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A243.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A243 TCGA-E9-A243-01A TCGA-E9-A243-01A-21R-A168-13 145ffd55-8265-4322-9e92-1a382c2eab7a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A243-01A-21R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A243 TCGA-E9-A243-01A TCGA-E9-A243-01A-21R-A168-13 145ffd55-8265-4322-9e92-1a382c2eab7a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A243-01A-21R-A168-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A243 TCGA-E9-A243-01A TCGA-E9-A243-01A-21R-A169-07 619ffb2b-a591-4f3b-aa48-b0c44f4ee36a Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A243.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A243 TCGA-E9-A243-10A TCGA-E9-A243-10A-01D-A166-01 35329b0e-b72f-48fb-82ae-3af3bda80249 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A08_802468.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-E9-A243 TCGA-E9-A243-10A TCGA-E9-A243-10A-01D-A166-01 35329b0e-b72f-48fb-82ae-3af3bda80249 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A08_802468.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A243 TCGA-E9-A243-10A TCGA-E9-A243-10A-01D-A166-01 35329b0e-b72f-48fb-82ae-3af3bda80249 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A08_802468.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A243 TCGA-E9-A243-10A TCGA-E9-A243-10A-01D-A166-01 35329b0e-b72f-48fb-82ae-3af3bda80249 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_A08_802468.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-E9-A243 TCGA-E9-A243-10A TCGA-E9-A243-10A-01D-A167-09 e378c50a-72cc-404a-9c9d-92b79c657258 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A243.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A243 TCGA-E9-A243-10A TCGA-E9-A243-10A-01D-A17G-09 a7e3e9d1-e371-4d3d-92cd-7985f276f70b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A243.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A243 TCGA-E9-A243-10A TCGA-E9-A243-10A-01W-A184-09 32e6b82b-ed16-488c-bb95-8434f5f7d703 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A243.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A244 TCGA-E9-A244-01A TCGA-E9-A244-01A-11D-A165-02 33110ccf-627e-498d-ab91-26b49f914f55 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A244.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A244 TCGA-E9-A244-01A TCGA-E9-A244-01A-11D-A166-01 4695c0f4-4d30-4604-84b3-81407bf980e8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A244.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A244 TCGA-E9-A244-01A TCGA-E9-A244-01A-11D-A166-01 4695c0f4-4d30-4604-84b3-81407bf980e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B12_802320.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-E9-A244 TCGA-E9-A244-01A TCGA-E9-A244-01A-11D-A166-01 4695c0f4-4d30-4604-84b3-81407bf980e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B12_802320.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A244 TCGA-E9-A244-01A TCGA-E9-A244-01A-11D-A166-01 4695c0f4-4d30-4604-84b3-81407bf980e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B12_802320.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A244 TCGA-E9-A244-01A TCGA-E9-A244-01A-11D-A166-01 4695c0f4-4d30-4604-84b3-81407bf980e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B12_802320.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A244 TCGA-E9-A244-01A TCGA-E9-A244-01A-11D-A166-01 4695c0f4-4d30-4604-84b3-81407bf980e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B12_802320.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A244 TCGA-E9-A244-01A TCGA-E9-A244-01A-11D-A166-01 4695c0f4-4d30-4604-84b3-81407bf980e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B12_802320.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A244 TCGA-E9-A244-01A TCGA-E9-A244-01A-11D-A166-01 4695c0f4-4d30-4604-84b3-81407bf980e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B12_802320.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A244 TCGA-E9-A244-01A TCGA-E9-A244-01A-11D-A166-01 4695c0f4-4d30-4604-84b3-81407bf980e8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_B12_802320.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-E9-A244 TCGA-E9-A244-01A TCGA-E9-A244-01A-11D-A167-09 9edf63e8-ae94-4b2f-8521-b56dadc21cd5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A244.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A244 TCGA-E9-A244-01A TCGA-E9-A244-01A-11D-A16A-05 7777a321-7fbd-4f80-9931-f01819a439ef Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A244.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A244 TCGA-E9-A244-01A TCGA-E9-A244-01A-11D-A16A-05 7777a321-7fbd-4f80-9931-f01819a439ef DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833155_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-E9-A244 TCGA-E9-A244-01A TCGA-E9-A244-01A-11D-A16A-05 7777a321-7fbd-4f80-9931-f01819a439ef DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833155_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-E9-A244 TCGA-E9-A244-01A TCGA-E9-A244-01A-11D-A16A-05 7777a321-7fbd-4f80-9931-f01819a439ef DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-2.TCGA-E9-A244-01A-11D-A16A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0 142 07-NOV-11 04.58.21.556000000 PM TCGA-E9-A244 TCGA-E9-A244-01A TCGA-E9-A244-01A-11D-A16A-05 7777a321-7fbd-4f80-9931-f01819a439ef DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-3.TCGA-E9-A244-01A-11D-A16A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0 142 07-NOV-11 06.37.11.245000000 PM TCGA-E9-A244 TCGA-E9-A244-01A TCGA-E9-A244-01A-11R-A168-13 5ee69860-d0c9-4ccc-b18d-a598015aac5f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A244.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A244 TCGA-E9-A244-01A TCGA-E9-A244-01A-11R-A168-13 5ee69860-d0c9-4ccc-b18d-a598015aac5f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A244-01A-11R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A244 TCGA-E9-A244-01A TCGA-E9-A244-01A-11R-A168-13 5ee69860-d0c9-4ccc-b18d-a598015aac5f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A244-01A-11R-A168-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A244 TCGA-E9-A244-01A TCGA-E9-A244-01A-11R-A169-07 147d6ebb-7359-449a-9e6a-6c8443ebaa2e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A244.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A244 TCGA-E9-A244-01A TCGA-E9-A244-01A-11R-A169-07 147d6ebb-7359-449a-9e6a-6c8443ebaa2e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_591220.TCGA-E9-A244-01A-11R-A169-07.110919_UNC13-SN749_0113_AB00WUABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A244 TCGA-E9-A244-01A TCGA-E9-A244-01A-11R-A169-07 147d6ebb-7359-449a-9e6a-6c8443ebaa2e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_591224.TCGA-E9-A244-01A-11R-A169-07.110919_UNC13-SN749_0113_AB00WUABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A244 TCGA-E9-A244-01A TCGA-E9-A244-01A-11R-A169-07 147d6ebb-7359-449a-9e6a-6c8443ebaa2e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_591270.TCGA-E9-A244-01A-11R-A169-07.110919_UNC13-SN749_0113_AB00WUABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A244 TCGA-E9-A244-01A TCGA-E9-A244-01A-11W-A184-09 056b8845-69fe-476c-8e03-3edb9f308bfd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A244.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A244 TCGA-E9-A244-10A TCGA-E9-A244-10A-01D-A165-02 7e57bc1d-c543-4189-8ecb-2118b2d46dd3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A244.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A244 TCGA-E9-A244-10A TCGA-E9-A244-10A-01D-A166-01 c9cc40fc-074e-4a0c-a5fc-666d44b046df Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A244.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A244 TCGA-E9-A244-10A TCGA-E9-A244-10A-01D-A166-01 c9cc40fc-074e-4a0c-a5fc-666d44b046df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C02_802398.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-E9-A244 TCGA-E9-A244-10A TCGA-E9-A244-10A-01D-A166-01 c9cc40fc-074e-4a0c-a5fc-666d44b046df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C02_802398.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A244 TCGA-E9-A244-10A TCGA-E9-A244-10A-01D-A166-01 c9cc40fc-074e-4a0c-a5fc-666d44b046df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C02_802398.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A244 TCGA-E9-A244-10A TCGA-E9-A244-10A-01D-A166-01 c9cc40fc-074e-4a0c-a5fc-666d44b046df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C02_802398.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A244 TCGA-E9-A244-10A TCGA-E9-A244-10A-01D-A166-01 c9cc40fc-074e-4a0c-a5fc-666d44b046df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C02_802398.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A244 TCGA-E9-A244-10A TCGA-E9-A244-10A-01D-A166-01 c9cc40fc-074e-4a0c-a5fc-666d44b046df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C02_802398.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A244 TCGA-E9-A244-10A TCGA-E9-A244-10A-01D-A166-01 c9cc40fc-074e-4a0c-a5fc-666d44b046df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C02_802398.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A244 TCGA-E9-A244-10A TCGA-E9-A244-10A-01D-A166-01 c9cc40fc-074e-4a0c-a5fc-666d44b046df SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C02_802398.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-E9-A244 TCGA-E9-A244-10A TCGA-E9-A244-10A-01D-A167-09 c067e16d-40af-44b1-bb55-b8c71ed021d3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A244.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A244 TCGA-E9-A244-10A TCGA-E9-A244-10A-01W-A184-09 a7a469ca-3e2a-428a-a41c-81d0d21e2bb3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A244.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A245 TCGA-E9-A245-01A TCGA-E9-A245-01A-22D-A16B-02 4882b86a-1a4a-42a0-898c-50a60723a80d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A245.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A245 TCGA-E9-A245-01A TCGA-E9-A245-01A-22D-A16C-01 c45b38c4-d7ce-4f8d-ba2f-c42ff0794ecc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A245.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A245 TCGA-E9-A245-01A TCGA-E9-A245-01A-22D-A16C-01 c45b38c4-d7ce-4f8d-ba2f-c42ff0794ecc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F08_799916.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-E9-A245 TCGA-E9-A245-01A TCGA-E9-A245-01A-22D-A16C-01 c45b38c4-d7ce-4f8d-ba2f-c42ff0794ecc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F08_799916.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-E9-A245 TCGA-E9-A245-01A TCGA-E9-A245-01A-22D-A16C-01 c45b38c4-d7ce-4f8d-ba2f-c42ff0794ecc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F08_799916.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-E9-A245 TCGA-E9-A245-01A TCGA-E9-A245-01A-22D-A16C-01 c45b38c4-d7ce-4f8d-ba2f-c42ff0794ecc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F08_799916.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-E9-A245 TCGA-E9-A245-01A TCGA-E9-A245-01A-22D-A16C-01 c45b38c4-d7ce-4f8d-ba2f-c42ff0794ecc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F08_799916.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-E9-A245 TCGA-E9-A245-01A TCGA-E9-A245-01A-22D-A16C-01 c45b38c4-d7ce-4f8d-ba2f-c42ff0794ecc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F08_799916.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-E9-A245 TCGA-E9-A245-01A TCGA-E9-A245-01A-22D-A16C-01 c45b38c4-d7ce-4f8d-ba2f-c42ff0794ecc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F08_799916.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-E9-A245 TCGA-E9-A245-01A TCGA-E9-A245-01A-22D-A16C-01 c45b38c4-d7ce-4f8d-ba2f-c42ff0794ecc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F08_799916.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-E9-A245 TCGA-E9-A245-01A TCGA-E9-A245-01A-22D-A16D-09 bdd591f9-21d1-4ce5-bfde-30e7ac3d440a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A245.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A245 TCGA-E9-A245-01A TCGA-E9-A245-01A-22D-A16G-05 7214c5bd-4a08-4427-868b-e10e3a82777d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A245.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A245 TCGA-E9-A245-01A TCGA-E9-A245-01A-22D-A16G-05 7214c5bd-4a08-4427-868b-e10e3a82777d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009059_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-E9-A245 TCGA-E9-A245-01A TCGA-E9-A245-01A-22D-A16G-05 7214c5bd-4a08-4427-868b-e10e3a82777d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009059_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-E9-A245 TCGA-E9-A245-01A TCGA-E9-A245-01A-22D-A16G-05 7214c5bd-4a08-4427-868b-e10e3a82777d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-2.TCGA-E9-A245-01A-22D-A16G-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0 147 07-NOV-11 05.10.40.874000000 PM TCGA-E9-A245 TCGA-E9-A245-01A TCGA-E9-A245-01A-22D-A16G-05 7214c5bd-4a08-4427-868b-e10e3a82777d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-3.TCGA-E9-A245-01A-22D-A16G-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0 147 07-NOV-11 05.48.07.389000000 PM TCGA-E9-A245 TCGA-E9-A245-01A TCGA-E9-A245-01A-22R-A16E-13 2ea1702b-5b53-4e3f-bc45-ceb55b390d13 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A245.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A245 TCGA-E9-A245-01A TCGA-E9-A245-01A-22R-A16E-13 2ea1702b-5b53-4e3f-bc45-ceb55b390d13 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A245-01A-22R-A16E-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A245 TCGA-E9-A245-01A TCGA-E9-A245-01A-22R-A16E-13 2ea1702b-5b53-4e3f-bc45-ceb55b390d13 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A245-01A-22R-A16E-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A245 TCGA-E9-A245-01A TCGA-E9-A245-01A-22R-A16F-07 538ab6dc-6dff-49e2-ae6a-b91ee6619bce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A245.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A245 TCGA-E9-A245-01A TCGA-E9-A245-01A-22R-A16F-07 538ab6dc-6dff-49e2-ae6a-b91ee6619bce RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_840825.TCGA-E9-A245-01A-22R-A16F-07.111014_UNC12-SN629_0152_BB00YRABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A245 TCGA-E9-A245-01A TCGA-E9-A245-01A-22R-A16F-07 538ab6dc-6dff-49e2-ae6a-b91ee6619bce RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_840830.TCGA-E9-A245-01A-22R-A16F-07.111014_UNC12-SN629_0152_BB00YRABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A245 TCGA-E9-A245-01A TCGA-E9-A245-01A-22R-A16F-07 538ab6dc-6dff-49e2-ae6a-b91ee6619bce RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_840879.TCGA-E9-A245-01A-22R-A16F-07.111014_UNC12-SN629_0152_BB00YRABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A245 TCGA-E9-A245-01A TCGA-E9-A245-01A-22W-A189-09 7caa2404-92a9-4cc5-acc4-d75472008a37 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A245.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A245 TCGA-E9-A245-10A TCGA-E9-A245-10A-01D-A16B-02 b65bfc44-8f37-44cb-a5de-65b8913518b6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A245.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A245 TCGA-E9-A245-10A TCGA-E9-A245-10A-01D-A16C-01 3fd3c74b-da31-43fc-b92f-d7d07dd85101 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A245.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A245 TCGA-E9-A245-10A TCGA-E9-A245-10A-01D-A16C-01 3fd3c74b-da31-43fc-b92f-d7d07dd85101 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F09_799842.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-E9-A245 TCGA-E9-A245-10A TCGA-E9-A245-10A-01D-A16C-01 3fd3c74b-da31-43fc-b92f-d7d07dd85101 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F09_799842.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-E9-A245 TCGA-E9-A245-10A TCGA-E9-A245-10A-01D-A16C-01 3fd3c74b-da31-43fc-b92f-d7d07dd85101 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F09_799842.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-E9-A245 TCGA-E9-A245-10A TCGA-E9-A245-10A-01D-A16C-01 3fd3c74b-da31-43fc-b92f-d7d07dd85101 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F09_799842.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-E9-A245 TCGA-E9-A245-10A TCGA-E9-A245-10A-01D-A16C-01 3fd3c74b-da31-43fc-b92f-d7d07dd85101 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F09_799842.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-E9-A245 TCGA-E9-A245-10A TCGA-E9-A245-10A-01D-A16C-01 3fd3c74b-da31-43fc-b92f-d7d07dd85101 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F09_799842.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-E9-A245 TCGA-E9-A245-10A TCGA-E9-A245-10A-01D-A16C-01 3fd3c74b-da31-43fc-b92f-d7d07dd85101 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F09_799842.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-E9-A245 TCGA-E9-A245-10A TCGA-E9-A245-10A-01D-A16C-01 3fd3c74b-da31-43fc-b92f-d7d07dd85101 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F09_799842.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-E9-A245 TCGA-E9-A245-10A TCGA-E9-A245-10A-01D-A16D-09 5238df31-1273-4814-98cc-e8f1c180ee3d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A245.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A245 TCGA-E9-A245-10A TCGA-E9-A245-10A-01W-A189-09 b7089eab-b1e0-4cd8-ba19-e57c011d00b2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A245.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A247 TCGA-E9-A247-01A TCGA-E9-A247-01A-11D-A165-02 68a2f0fc-3664-475b-a1ee-134c3e0bb69b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A247.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A247 TCGA-E9-A247-01A TCGA-E9-A247-01A-11D-A166-01 37240e3a-9340-4509-a5e9-c7877ed93f52 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A247.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A247 TCGA-E9-A247-01A TCGA-E9-A247-01A-11D-A166-01 37240e3a-9340-4509-a5e9-c7877ed93f52 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E04_802430.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-E9-A247 TCGA-E9-A247-01A TCGA-E9-A247-01A-11D-A166-01 37240e3a-9340-4509-a5e9-c7877ed93f52 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E04_802430.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A247 TCGA-E9-A247-01A TCGA-E9-A247-01A-11D-A166-01 37240e3a-9340-4509-a5e9-c7877ed93f52 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E04_802430.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A247 TCGA-E9-A247-01A TCGA-E9-A247-01A-11D-A166-01 37240e3a-9340-4509-a5e9-c7877ed93f52 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E04_802430.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A247 TCGA-E9-A247-01A TCGA-E9-A247-01A-11D-A166-01 37240e3a-9340-4509-a5e9-c7877ed93f52 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E04_802430.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A247 TCGA-E9-A247-01A TCGA-E9-A247-01A-11D-A166-01 37240e3a-9340-4509-a5e9-c7877ed93f52 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E04_802430.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A247 TCGA-E9-A247-01A TCGA-E9-A247-01A-11D-A166-01 37240e3a-9340-4509-a5e9-c7877ed93f52 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E04_802430.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A247 TCGA-E9-A247-01A TCGA-E9-A247-01A-11D-A166-01 37240e3a-9340-4509-a5e9-c7877ed93f52 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E04_802430.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-E9-A247 TCGA-E9-A247-01A TCGA-E9-A247-01A-11D-A167-09 7c184a2b-d857-444a-936c-43e38a196df9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A247.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A247 TCGA-E9-A247-01A TCGA-E9-A247-01A-11D-A16A-05 0cb1efad-79a6-47f1-9467-66f75754f65c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A247.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A247 TCGA-E9-A247-01A TCGA-E9-A247-01A-11D-A16A-05 0cb1efad-79a6-47f1-9467-66f75754f65c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833155_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-E9-A247 TCGA-E9-A247-01A TCGA-E9-A247-01A-11D-A16A-05 0cb1efad-79a6-47f1-9467-66f75754f65c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833155_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-E9-A247 TCGA-E9-A247-01A TCGA-E9-A247-01A-11D-A16A-05 0cb1efad-79a6-47f1-9467-66f75754f65c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-2.TCGA-E9-A247-01A-11D-A16A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0 142 07-NOV-11 04.58.21.556000000 PM TCGA-E9-A247 TCGA-E9-A247-01A TCGA-E9-A247-01A-11D-A16A-05 0cb1efad-79a6-47f1-9467-66f75754f65c DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-3.TCGA-E9-A247-01A-11D-A16A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0 142 07-NOV-11 06.37.11.245000000 PM TCGA-E9-A247 TCGA-E9-A247-01A TCGA-E9-A247-01A-11R-A168-13 e4083e1a-04dc-45c6-8ea9-78ca75166125 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A247.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A247 TCGA-E9-A247-01A TCGA-E9-A247-01A-11R-A168-13 e4083e1a-04dc-45c6-8ea9-78ca75166125 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A247-01A-11R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A247 TCGA-E9-A247-01A TCGA-E9-A247-01A-11R-A168-13 e4083e1a-04dc-45c6-8ea9-78ca75166125 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A247-01A-11R-A168-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A247 TCGA-E9-A247-01A TCGA-E9-A247-01A-11R-A169-07 3c38c1fe-9f57-4523-9654-c4bc6b02e84f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A247.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A247 TCGA-E9-A247-01A TCGA-E9-A247-01A-11R-A169-07 3c38c1fe-9f57-4523-9654-c4bc6b02e84f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_591184.TCGA-E9-A247-01A-11R-A169-07.110919_UNC13-SN749_0113_AB00WUABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A247 TCGA-E9-A247-01A TCGA-E9-A247-01A-11R-A169-07 3c38c1fe-9f57-4523-9654-c4bc6b02e84f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_591213.TCGA-E9-A247-01A-11R-A169-07.110919_UNC13-SN749_0113_AB00WUABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A247 TCGA-E9-A247-01A TCGA-E9-A247-01A-11R-A169-07 3c38c1fe-9f57-4523-9654-c4bc6b02e84f RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_591228.TCGA-E9-A247-01A-11R-A169-07.110919_UNC13-SN749_0113_AB00WUABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 142 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A247 TCGA-E9-A247-01A TCGA-E9-A247-01A-11W-A184-09 8bb3c11b-984a-476c-8a7d-20099df6d47c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A247.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A247 TCGA-E9-A247-10A TCGA-E9-A247-10A-01D-A165-02 e6fb1bb2-620a-48ad-b319-6f207d83735c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A247.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A247 TCGA-E9-A247-10A TCGA-E9-A247-10A-01D-A166-01 32d792be-b063-4af0-9ffe-e55f8109bff5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A247.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A247 TCGA-E9-A247-10A TCGA-E9-A247-10A-01D-A166-01 32d792be-b063-4af0-9ffe-e55f8109bff5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C06_802374.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-E9-A247 TCGA-E9-A247-10A TCGA-E9-A247-10A-01D-A166-01 32d792be-b063-4af0-9ffe-e55f8109bff5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C06_802374.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A247 TCGA-E9-A247-10A TCGA-E9-A247-10A-01D-A166-01 32d792be-b063-4af0-9ffe-e55f8109bff5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C06_802374.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A247 TCGA-E9-A247-10A TCGA-E9-A247-10A-01D-A166-01 32d792be-b063-4af0-9ffe-e55f8109bff5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C06_802374.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A247 TCGA-E9-A247-10A TCGA-E9-A247-10A-01D-A166-01 32d792be-b063-4af0-9ffe-e55f8109bff5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C06_802374.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A247 TCGA-E9-A247-10A TCGA-E9-A247-10A-01D-A166-01 32d792be-b063-4af0-9ffe-e55f8109bff5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C06_802374.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A247 TCGA-E9-A247-10A TCGA-E9-A247-10A-01D-A166-01 32d792be-b063-4af0-9ffe-e55f8109bff5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C06_802374.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A247 TCGA-E9-A247-10A TCGA-E9-A247-10A-01D-A166-01 32d792be-b063-4af0-9ffe-e55f8109bff5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_C06_802374.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-E9-A247 TCGA-E9-A247-10A TCGA-E9-A247-10A-01D-A167-09 9a71e51e-6adf-4b93-b968-3849fcc81504 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A247.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A247 TCGA-E9-A247-10A TCGA-E9-A247-10A-01W-A184-09 4d1d6d5c-4043-44f5-8414-881683e24a26 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A247.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A248 TCGA-E9-A248-01A TCGA-E9-A248-01A-11D-A165-02 1430735f-7aef-40dc-910c-68fc004c9f99 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A248.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A248 TCGA-E9-A248-01A TCGA-E9-A248-01A-11D-A166-01 091f70c0-586a-49e8-a0e5-0b60caa72c1b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A248.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A248 TCGA-E9-A248-01A TCGA-E9-A248-01A-11D-A166-01 091f70c0-586a-49e8-a0e5-0b60caa72c1b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G10_802478.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-E9-A248 TCGA-E9-A248-01A TCGA-E9-A248-01A-11D-A166-01 091f70c0-586a-49e8-a0e5-0b60caa72c1b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G10_802478.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A248 TCGA-E9-A248-01A TCGA-E9-A248-01A-11D-A166-01 091f70c0-586a-49e8-a0e5-0b60caa72c1b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G10_802478.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A248 TCGA-E9-A248-01A TCGA-E9-A248-01A-11D-A166-01 091f70c0-586a-49e8-a0e5-0b60caa72c1b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G10_802478.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A248 TCGA-E9-A248-01A TCGA-E9-A248-01A-11D-A166-01 091f70c0-586a-49e8-a0e5-0b60caa72c1b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G10_802478.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A248 TCGA-E9-A248-01A TCGA-E9-A248-01A-11D-A166-01 091f70c0-586a-49e8-a0e5-0b60caa72c1b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G10_802478.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A248 TCGA-E9-A248-01A TCGA-E9-A248-01A-11D-A166-01 091f70c0-586a-49e8-a0e5-0b60caa72c1b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G10_802478.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A248 TCGA-E9-A248-01A TCGA-E9-A248-01A-11D-A166-01 091f70c0-586a-49e8-a0e5-0b60caa72c1b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G10_802478.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-E9-A248 TCGA-E9-A248-01A TCGA-E9-A248-01A-11D-A167-09 fee90b4e-f005-4b40-a9af-d1e590b1e8a8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A248.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A248 TCGA-E9-A248-01A TCGA-E9-A248-01A-11D-A16A-05 e3d13201-a362-40cd-8338-b8da791dbfd5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A248.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A248 TCGA-E9-A248-01A TCGA-E9-A248-01A-11D-A16A-05 e3d13201-a362-40cd-8338-b8da791dbfd5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833134_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-E9-A248 TCGA-E9-A248-01A TCGA-E9-A248-01A-11D-A16A-05 e3d13201-a362-40cd-8338-b8da791dbfd5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833134_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-E9-A248 TCGA-E9-A248-01A TCGA-E9-A248-01A-11D-A16A-05 e3d13201-a362-40cd-8338-b8da791dbfd5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-2.TCGA-E9-A248-01A-11D-A16A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0 142 07-NOV-11 04.58.21.556000000 PM TCGA-E9-A248 TCGA-E9-A248-01A TCGA-E9-A248-01A-11D-A16A-05 e3d13201-a362-40cd-8338-b8da791dbfd5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-3.TCGA-E9-A248-01A-11D-A16A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0 142 07-NOV-11 06.37.11.245000000 PM TCGA-E9-A248 TCGA-E9-A248-01A TCGA-E9-A248-01A-11R-A168-13 a4506ccd-668c-45d8-81a0-c8469f389a0f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A248.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A248 TCGA-E9-A248-01A TCGA-E9-A248-01A-11R-A168-13 a4506ccd-668c-45d8-81a0-c8469f389a0f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A248-01A-11R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A248 TCGA-E9-A248-01A TCGA-E9-A248-01A-11R-A168-13 a4506ccd-668c-45d8-81a0-c8469f389a0f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A248-01A-11R-A168-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A248 TCGA-E9-A248-01A TCGA-E9-A248-01A-11R-A169-07 0a9215ea-d5d2-41ad-a00d-bd7722f41229 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A248.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A248 TCGA-E9-A248-01A TCGA-E9-A248-01A-11R-A169-07 0a9215ea-d5d2-41ad-a00d-bd7722f41229 RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A248.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A248 TCGA-E9-A248-10A TCGA-E9-A248-10A-01D-A166-01 71a14b9e-8f95-4d73-a5e4-6ddab42dee37 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A248.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A248 TCGA-E9-A248-10A TCGA-E9-A248-10A-01D-A166-01 71a14b9e-8f95-4d73-a5e4-6ddab42dee37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H01_804442.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-E9-A248 TCGA-E9-A248-10A TCGA-E9-A248-10A-01D-A166-01 71a14b9e-8f95-4d73-a5e4-6ddab42dee37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H01_804442.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A248 TCGA-E9-A248-10A TCGA-E9-A248-10A-01D-A166-01 71a14b9e-8f95-4d73-a5e4-6ddab42dee37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H01_804442.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A248 TCGA-E9-A248-10A TCGA-E9-A248-10A-01D-A166-01 71a14b9e-8f95-4d73-a5e4-6ddab42dee37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H01_804442.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A248 TCGA-E9-A248-10A TCGA-E9-A248-10A-01D-A166-01 71a14b9e-8f95-4d73-a5e4-6ddab42dee37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H01_804442.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A248 TCGA-E9-A248-10A TCGA-E9-A248-10A-01D-A166-01 71a14b9e-8f95-4d73-a5e4-6ddab42dee37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H01_804442.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A248 TCGA-E9-A248-10A TCGA-E9-A248-10A-01D-A166-01 71a14b9e-8f95-4d73-a5e4-6ddab42dee37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H01_804442.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A248 TCGA-E9-A248-10A TCGA-E9-A248-10A-01D-A166-01 71a14b9e-8f95-4d73-a5e4-6ddab42dee37 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0/COMIC_p_TCGA_b142_SNP_S_GenomeWideSNP_6_H01_804442.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.142.1008.0 142 07-DEC-11 01.00.02.952000000 PM TCGA-E9-A248 TCGA-E9-A248-10A TCGA-E9-A248-10A-01D-A167-09 6964baa2-3344-49db-ad80-1e28ae93e53c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A248.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A248 TCGA-E9-A248-10A TCGA-E9-A248-10A-01W-A184-09 acdc8562-a69f-49a0-823a-f38e253480b1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A248.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A249 TCGA-E9-A249-01A TCGA-E9-A249-01A-11D-A165-02 32e635b0-73ec-4bed-a871-1216498eab67 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A249.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A249 TCGA-E9-A249-01A TCGA-E9-A249-01A-11D-A166-01 2e3fb75f-065e-4db0-bddf-8bcc6c7ace38 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A249.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A249 TCGA-E9-A249-01A TCGA-E9-A249-01A-11D-A166-01 2e3fb75f-065e-4db0-bddf-8bcc6c7ace38 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E10_802332.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-E9-A249 TCGA-E9-A249-01A TCGA-E9-A249-01A-11D-A166-01 2e3fb75f-065e-4db0-bddf-8bcc6c7ace38 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E10_802332.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A249 TCGA-E9-A249-01A TCGA-E9-A249-01A-11D-A166-01 2e3fb75f-065e-4db0-bddf-8bcc6c7ace38 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E10_802332.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A249 TCGA-E9-A249-01A TCGA-E9-A249-01A-11D-A166-01 2e3fb75f-065e-4db0-bddf-8bcc6c7ace38 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_E10_802332.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A249 TCGA-E9-A249-01A TCGA-E9-A249-01A-11D-A166-01 2e3fb75f-065e-4db0-bddf-8bcc6c7ace38 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A249.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A249 TCGA-E9-A249-01A TCGA-E9-A249-01A-11D-A16A-05 5a9087d2-08e3-40c1-93d4-e83cba3df2ad Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A249.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A249 TCGA-E9-A249-01A TCGA-E9-A249-01A-11D-A16A-05 5a9087d2-08e3-40c1-93d4-e83cba3df2ad DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-2.TCGA-E9-A249-01A-11D-A16A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0 142 07-NOV-11 04.58.21.556000000 PM TCGA-E9-A249 TCGA-E9-A249-01A TCGA-E9-A249-01A-11D-A16A-05 5a9087d2-08e3-40c1-93d4-e83cba3df2ad DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-3.TCGA-E9-A249-01A-11D-A16A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0 142 07-NOV-11 06.37.11.245000000 PM TCGA-E9-A249 TCGA-E9-A249-01A TCGA-E9-A249-01A-11R-A168-13 61eab382-e8b4-41c2-87c2-092a7a0b8f66 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A249.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A249 TCGA-E9-A249-01A TCGA-E9-A249-01A-11R-A168-13 61eab382-e8b4-41c2-87c2-092a7a0b8f66 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A249-01A-11R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A249 TCGA-E9-A249-01A TCGA-E9-A249-01A-11R-A168-13 61eab382-e8b4-41c2-87c2-092a7a0b8f66 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A249.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A249 TCGA-E9-A249-10A TCGA-E9-A249-10A-01D-A166-01 55b0300f-dace-447d-b2eb-672ef5a054d6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A249.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A249 TCGA-E9-A249-10A TCGA-E9-A249-10A-01D-A166-01 55b0300f-dace-447d-b2eb-672ef5a054d6 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A24A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A24A TCGA-E9-A24A-01A TCGA-E9-A24A-01A-11D-A166-01 646a5d15-e48b-4183-b437-98280a5821c3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A24A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A24A TCGA-E9-A24A-01A TCGA-E9-A24A-01A-11D-A166-01 646a5d15-e48b-4183-b437-98280a5821c3 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A24A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A24A TCGA-E9-A24A-01A TCGA-E9-A24A-01A-11D-A16A-05 89347c5e-731f-419c-9fc4-0e39e6611cd8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A24A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A24A TCGA-E9-A24A-01A TCGA-E9-A24A-01A-11D-A16A-05 89347c5e-731f-419c-9fc4-0e39e6611cd8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833141_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-E9-A24A TCGA-E9-A24A-01A TCGA-E9-A24A-01A-11D-A16A-05 89347c5e-731f-419c-9fc4-0e39e6611cd8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0/6057833141_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.14.1.0 142 07-NOV-11 04.15.56.932000000 PM TCGA-E9-A24A TCGA-E9-A24A-01A TCGA-E9-A24A-01A-11D-A16A-05 89347c5e-731f-419c-9fc4-0e39e6611cd8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-2.TCGA-E9-A24A-01A-11D-A16A-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.14.1.0 142 07-NOV-11 04.58.21.556000000 PM TCGA-E9-A24A TCGA-E9-A24A-01A TCGA-E9-A24A-01A-11D-A16A-05 89347c5e-731f-419c-9fc4-0e39e6611cd8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0/jhu-usc.edu_BRCA.HumanMethylation450.14.lvl-3.TCGA-E9-A24A-01A-11D-A16A-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.14.1.0 142 07-NOV-11 06.37.11.245000000 PM TCGA-E9-A24A TCGA-E9-A24A-01A TCGA-E9-A24A-01A-11R-A168-13 a6e8a2e3-b6a7-4650-9ad0-33edcd778769 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A24A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A24A TCGA-E9-A24A-01A TCGA-E9-A24A-01A-11R-A168-13 a6e8a2e3-b6a7-4650-9ad0-33edcd778769 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A24A-01A-11R-A168-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 142 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A24A TCGA-E9-A24A-01A TCGA-E9-A24A-01A-11R-A168-13 a6e8a2e3-b6a7-4650-9ad0-33edcd778769 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A24A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A24A TCGA-E9-A24A-10A TCGA-E9-A24A-10A-01D-A166-01 ef08f1f2-da3f-4930-b92b-03d2ae0abbf8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A24A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A24A TCGA-E9-A24A-10A TCGA-E9-A24A-10A-01D-A166-01 ef08f1f2-da3f-4930-b92b-03d2ae0abbf8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G06_802446.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.142.1008.0 142 07-DEC-11 11.20.55.968000000 AM TCGA-E9-A24A TCGA-E9-A24A-10A TCGA-E9-A24A-10A-01D-A166-01 ef08f1f2-da3f-4930-b92b-03d2ae0abbf8 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0/EXINE_p_TCGA_b142_SNP_N_GenomeWideSNP_6_G06_802446.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.142.1008.0 142 07-DEC-11 11.59.42.015000000 AM TCGA-E9-A24A TCGA-E9-A24A-10A TCGA-E9-A24A-10A-01D-A166-01 ef08f1f2-da3f-4930-b92b-03d2ae0abbf8 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A24A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A24A TCGA-E9-A24A-10A TCGA-E9-A24A-10A-01W-A184-09 f4a7243c-0aa5-401b-ab26-d12d9d5cee9b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.142.8.0/nationwidechildrens.org_biospecimen.TCGA-E9-A24A.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.142.8.0 142 05-JAN-12 09.40.51.182000000 PM TCGA-E9-A295 TCGA-E9-A295-01A TCGA-E9-A295-01A-11D-A16B-02 f9e78462-b218-441c-8cc4-5f445b363280 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A295.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A295 TCGA-E9-A295-01A TCGA-E9-A295-01A-11D-A16C-01 17b870b5-a1e1-4cd3-8120-da9c6e95747f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A295.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A295 TCGA-E9-A295-01A TCGA-E9-A295-01A-11D-A16C-01 17b870b5-a1e1-4cd3-8120-da9c6e95747f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F12_799816.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-E9-A295 TCGA-E9-A295-01A TCGA-E9-A295-01A-11D-A16C-01 17b870b5-a1e1-4cd3-8120-da9c6e95747f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F12_799816.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-E9-A295 TCGA-E9-A295-01A TCGA-E9-A295-01A-11D-A16C-01 17b870b5-a1e1-4cd3-8120-da9c6e95747f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F12_799816.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-E9-A295 TCGA-E9-A295-01A TCGA-E9-A295-01A-11D-A16C-01 17b870b5-a1e1-4cd3-8120-da9c6e95747f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F12_799816.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-E9-A295 TCGA-E9-A295-01A TCGA-E9-A295-01A-11D-A16C-01 17b870b5-a1e1-4cd3-8120-da9c6e95747f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F12_799816.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-E9-A295 TCGA-E9-A295-01A TCGA-E9-A295-01A-11D-A16C-01 17b870b5-a1e1-4cd3-8120-da9c6e95747f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F12_799816.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-E9-A295 TCGA-E9-A295-01A TCGA-E9-A295-01A-11D-A16C-01 17b870b5-a1e1-4cd3-8120-da9c6e95747f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F12_799816.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-E9-A295 TCGA-E9-A295-01A TCGA-E9-A295-01A-11D-A16C-01 17b870b5-a1e1-4cd3-8120-da9c6e95747f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_F12_799816.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-E9-A295 TCGA-E9-A295-01A TCGA-E9-A295-01A-11D-A16D-09 f3d5e986-046f-4f75-8abc-67a3b99f742d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A295.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A295 TCGA-E9-A295-01A TCGA-E9-A295-01A-11D-A16G-05 dd27a7b5-2e49-486f-891a-ae5634aa3643 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A295.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A295 TCGA-E9-A295-01A TCGA-E9-A295-01A-11D-A16G-05 dd27a7b5-2e49-486f-891a-ae5634aa3643 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009066_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-E9-A295 TCGA-E9-A295-01A TCGA-E9-A295-01A-11D-A16G-05 dd27a7b5-2e49-486f-891a-ae5634aa3643 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0/6229009066_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.15.1.0 147 07-NOV-11 04.22.53.227000000 PM TCGA-E9-A295 TCGA-E9-A295-01A TCGA-E9-A295-01A-11D-A16G-05 dd27a7b5-2e49-486f-891a-ae5634aa3643 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-2.TCGA-E9-A295-01A-11D-A16G-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.15.1.0 147 07-NOV-11 05.10.40.874000000 PM TCGA-E9-A295 TCGA-E9-A295-01A TCGA-E9-A295-01A-11D-A16G-05 dd27a7b5-2e49-486f-891a-ae5634aa3643 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0/jhu-usc.edu_BRCA.HumanMethylation450.15.lvl-3.TCGA-E9-A295-01A-11D-A16G-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.15.1.0 147 07-NOV-11 05.48.07.389000000 PM TCGA-E9-A295 TCGA-E9-A295-01A TCGA-E9-A295-01A-11R-A16E-13 ab97148f-47fe-4ec9-9eed-2f2200687708 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A295.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A295 TCGA-E9-A295-01A TCGA-E9-A295-01A-11R-A16E-13 ab97148f-47fe-4ec9-9eed-2f2200687708 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A295-01A-11R-A16E-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A295 TCGA-E9-A295-01A TCGA-E9-A295-01A-11R-A16E-13 ab97148f-47fe-4ec9-9eed-2f2200687708 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-E9-A295-01A-11R-A16E-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 147 31-OCT-11 10.17.59.939000000 PM TCGA-E9-A295 TCGA-E9-A295-01A TCGA-E9-A295-01A-11R-A16F-07 28ad8481-78a8-4103-b501-5cfd23ae3e81 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A295.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A295 TCGA-E9-A295-01A TCGA-E9-A295-01A-11R-A16F-07 28ad8481-78a8-4103-b501-5cfd23ae3e81 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_600334.TCGA-E9-A295-01A-11R-A16F-07.111014_UNC12-SN629_0152_BB00YRABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A295 TCGA-E9-A295-01A TCGA-E9-A295-01A-11R-A16F-07 28ad8481-78a8-4103-b501-5cfd23ae3e81 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_600376.TCGA-E9-A295-01A-11R-A16F-07.111014_UNC12-SN629_0152_BB00YRABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A295 TCGA-E9-A295-01A TCGA-E9-A295-01A-11R-A16F-07 28ad8481-78a8-4103-b501-5cfd23ae3e81 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_600403.TCGA-E9-A295-01A-11R-A16F-07.111014_UNC12-SN629_0152_BB00YRABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 147 09-FEB-12 06.18.17.220000000 PM TCGA-E9-A295 TCGA-E9-A295-01A TCGA-E9-A295-01A-11W-A189-09 172d9c20-bcd4-4edb-92ea-22634b60ed96 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A295.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A295 TCGA-E9-A295-10A TCGA-E9-A295-10A-01D-A16B-02 f7860945-8674-49e3-bbd8-d874b345321b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A295.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A295 TCGA-E9-A295-10A TCGA-E9-A295-10A-01D-A16C-01 26e7eafa-3933-4438-9ba1-71e97be54ae3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A295.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A295 TCGA-E9-A295-10A TCGA-E9-A295-10A-01D-A16C-01 26e7eafa-3933-4438-9ba1-71e97be54ae3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E02_799892.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.147.1008.0 147 07-DEC-11 11.20.49.680000000 AM TCGA-E9-A295 TCGA-E9-A295-10A TCGA-E9-A295-10A-01D-A16C-01 26e7eafa-3933-4438-9ba1-71e97be54ae3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E02_799892.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-E9-A295 TCGA-E9-A295-10A TCGA-E9-A295-10A-01D-A16C-01 26e7eafa-3933-4438-9ba1-71e97be54ae3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E02_799892.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-E9-A295 TCGA-E9-A295-10A TCGA-E9-A295-10A-01D-A16C-01 26e7eafa-3933-4438-9ba1-71e97be54ae3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E02_799892.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-E9-A295 TCGA-E9-A295-10A TCGA-E9-A295-10A-01D-A16C-01 26e7eafa-3933-4438-9ba1-71e97be54ae3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E02_799892.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-E9-A295 TCGA-E9-A295-10A TCGA-E9-A295-10A-01D-A16C-01 26e7eafa-3933-4438-9ba1-71e97be54ae3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E02_799892.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-E9-A295 TCGA-E9-A295-10A TCGA-E9-A295-10A-01D-A16C-01 26e7eafa-3933-4438-9ba1-71e97be54ae3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E02_799892.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.147.1008.0 147 07-DEC-11 12.00.10.392000000 PM TCGA-E9-A295 TCGA-E9-A295-10A TCGA-E9-A295-10A-01D-A16C-01 26e7eafa-3933-4438-9ba1-71e97be54ae3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0/WRIED_p_TCGA_143_147_150_Hahn_N_GenomeWideSNP_6_E02_799892.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.147.1008.0 147 07-DEC-11 01.00.04.122000000 PM TCGA-E9-A295 TCGA-E9-A295-10A TCGA-E9-A295-10A-01D-A16D-09 cd761feb-9a20-4495-8943-c6243532a5cf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A295.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A295 TCGA-E9-A295-10A TCGA-E9-A295-10A-01W-A189-09 052168f4-ebef-4288-8aef-f1fc24f26fce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.147.11.0/nationwidechildrens.org_biospecimen.TCGA-E9-A295.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.147.11.0 147 12-JAN-12 08.40.09.025000000 PM TCGA-E9-A2JS TCGA-E9-A2JS-01A TCGA-E9-A2JS-01A-11D-A17U-01 93e94458-a4e5-4de6-b4f0-13eb5e558d74 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1IX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1IX TCGA-EW-A1IX-01A TCGA-EW-A1IX-01A-12D-A141-01 1f0fc4e8-c27e-40dd-b531-4315a15be5af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E11_778136.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1IX TCGA-EW-A1IX-01A TCGA-EW-A1IX-01A-12D-A141-01 1f0fc4e8-c27e-40dd-b531-4315a15be5af SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E11_778136.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1IX TCGA-EW-A1IX-01A TCGA-EW-A1IX-01A-12D-A142-09 01ea194f-dc06-4e15-9b9e-1c73668040e0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1IX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1IX TCGA-EW-A1IX-01A TCGA-EW-A1IX-01A-12D-A145-05 92c1632c-6d8d-4639-802c-a6fc55aa1b51 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1IX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1IX TCGA-EW-A1IX-01A TCGA-EW-A1IX-01A-12D-A145-05 92c1632c-6d8d-4639-802c-a6fc55aa1b51 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818122_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1IX TCGA-EW-A1IX-01A TCGA-EW-A1IX-01A-12D-A145-05 92c1632c-6d8d-4639-802c-a6fc55aa1b51 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818122_R04C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1IX TCGA-EW-A1IX-01A TCGA-EW-A1IX-01A-12D-A145-05 92c1632c-6d8d-4639-802c-a6fc55aa1b51 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-EW-A1IX-01A-12D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-EW-A1IX TCGA-EW-A1IX-01A TCGA-EW-A1IX-01A-12D-A145-05 92c1632c-6d8d-4639-802c-a6fc55aa1b51 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-EW-A1IX-01A-12D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-EW-A1IX TCGA-EW-A1IX-01A TCGA-EW-A1IX-01A-12R-A143-13 85ada9ff-9a49-4614-a38c-7e24828d4703 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1IX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1IX TCGA-EW-A1IX-01A TCGA-EW-A1IX-01A-12R-A143-13 85ada9ff-9a49-4614-a38c-7e24828d4703 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1IX-01A-12R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1IX TCGA-EW-A1IX-01A TCGA-EW-A1IX-01A-12R-A143-13 85ada9ff-9a49-4614-a38c-7e24828d4703 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1IX-01A-12R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1IX TCGA-EW-A1IX-01A TCGA-EW-A1IX-01A-12R-A144-07 b908cd1b-b274-4b23-9cd5-b59d93a7a6c2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1IX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1IX TCGA-EW-A1IX-01A TCGA-EW-A1IX-01A-12R-A144-07 b908cd1b-b274-4b23-9cd5-b59d93a7a6c2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_688798.TCGA-EW-A1IX-01A-12R-A144-07.110801_UNC12-SN629_0115_BD0DVEABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1IX TCGA-EW-A1IX-01A TCGA-EW-A1IX-01A-12R-A144-07 b908cd1b-b274-4b23-9cd5-b59d93a7a6c2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_688853.TCGA-EW-A1IX-01A-12R-A144-07.110801_UNC12-SN629_0115_BD0DVEABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1IX TCGA-EW-A1IX-01A TCGA-EW-A1IX-01A-12R-A144-07 b908cd1b-b274-4b23-9cd5-b59d93a7a6c2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_688876.TCGA-EW-A1IX-01A-12R-A144-07.110801_UNC12-SN629_0115_BD0DVEABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1IX TCGA-EW-A1IX-01A TCGA-EW-A1IX-01A-12W-A187-09 0646ce68-064e-4896-9630-cd7a979652b6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1IX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1IX TCGA-EW-A1IX-10A TCGA-EW-A1IX-10A-01D-A140-02 9e3df6fc-d990-4cf1-8fb7-52cf1ea32ba7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1IX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1IX TCGA-EW-A1IX-10A TCGA-EW-A1IX-10A-01D-A141-01 c0d800a1-c215-458a-be15-16a3a614881e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1IX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1IX TCGA-EW-A1IX-10A TCGA-EW-A1IX-10A-01D-A141-01 c0d800a1-c215-458a-be15-16a3a614881e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F01_777970.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1IX TCGA-EW-A1IX-10A TCGA-EW-A1IX-10A-01D-A141-01 c0d800a1-c215-458a-be15-16a3a614881e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F01_777970.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1IX TCGA-EW-A1IX-10A TCGA-EW-A1IX-10A-01D-A141-01 c0d800a1-c215-458a-be15-16a3a614881e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F01_777970.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1IX TCGA-EW-A1IX-10A TCGA-EW-A1IX-10A-01D-A141-01 c0d800a1-c215-458a-be15-16a3a614881e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F01_777970.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1IX TCGA-EW-A1IX-10A TCGA-EW-A1IX-10A-01D-A141-01 c0d800a1-c215-458a-be15-16a3a614881e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F01_777970.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1IX TCGA-EW-A1IX-10A TCGA-EW-A1IX-10A-01D-A141-01 c0d800a1-c215-458a-be15-16a3a614881e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F01_777970.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1IX TCGA-EW-A1IX-10A TCGA-EW-A1IX-10A-01D-A141-01 c0d800a1-c215-458a-be15-16a3a614881e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F01_777970.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1IX TCGA-EW-A1IX-10A TCGA-EW-A1IX-10A-01D-A141-01 c0d800a1-c215-458a-be15-16a3a614881e SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F01_777970.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1IX TCGA-EW-A1IX-10A TCGA-EW-A1IX-10A-01D-A142-09 034e0751-b08d-4f11-8c52-a7e4f1267f47 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1IX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1IX TCGA-EW-A1IX-10A TCGA-EW-A1IX-10A-01W-A187-09 0f1c62f7-25f5-4226-954e-2fe3ba7e6d94 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1IX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1IY TCGA-EW-A1IY-01A TCGA-EW-A1IY-01A-11D-A13I-02 4a4a964e-71f6-4588-8b13-e9b3cb0cc2c6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1IY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1IY TCGA-EW-A1IY-01A TCGA-EW-A1IY-01A-11D-A13J-01 8bdd50df-ff86-4ba2-ba6c-0b1ee39ceb25 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1IY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1IY TCGA-EW-A1IY-01A TCGA-EW-A1IY-01A-11D-A13J-01 8bdd50df-ff86-4ba2-ba6c-0b1ee39ceb25 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D07_772132.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-EW-A1IY TCGA-EW-A1IY-01A TCGA-EW-A1IY-01A-11D-A13J-01 8bdd50df-ff86-4ba2-ba6c-0b1ee39ceb25 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D07_772132.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1IY TCGA-EW-A1IY-01A TCGA-EW-A1IY-01A-11D-A13J-01 8bdd50df-ff86-4ba2-ba6c-0b1ee39ceb25 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D07_772132.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1IY TCGA-EW-A1IY-01A TCGA-EW-A1IY-01A-11D-A13J-01 8bdd50df-ff86-4ba2-ba6c-0b1ee39ceb25 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E08_772200.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-EW-A1IZ TCGA-EW-A1IZ-10A TCGA-EW-A1IZ-10A-01D-A13N-01 66eded1f-9e0d-45f9-8d9e-7aa34e6c7327 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E08_772200.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1IZ TCGA-EW-A1IZ-10A TCGA-EW-A1IZ-10A-01D-A13N-01 66eded1f-9e0d-45f9-8d9e-7aa34e6c7327 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E08_772200.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1IZ TCGA-EW-A1IZ-10A TCGA-EW-A1IZ-10A-01D-A13N-01 66eded1f-9e0d-45f9-8d9e-7aa34e6c7327 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E08_772200.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1IZ TCGA-EW-A1IZ-10A TCGA-EW-A1IZ-10A-01D-A13N-01 66eded1f-9e0d-45f9-8d9e-7aa34e6c7327 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E08_772200.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1IZ TCGA-EW-A1IZ-10A TCGA-EW-A1IZ-10A-01D-A13N-01 66eded1f-9e0d-45f9-8d9e-7aa34e6c7327 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E08_772200.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-EW-A1IZ TCGA-EW-A1IZ-10A TCGA-EW-A1IZ-10A-01D-A13O-09 e528b9ef-53e6-49d4-a86c-648a752d1835 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1IZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1IZ TCGA-EW-A1IZ-10A TCGA-EW-A1IZ-10A-01W-A14R-09 a52fffcd-4071-4ddc-96a6-9ea39d69ce79 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1IZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J1 TCGA-EW-A1J1-01A TCGA-EW-A1J1-01A-11D-A13I-02 2f717ad7-f829-44a7-9398-032c5a2173ca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J1 TCGA-EW-A1J1-01A TCGA-EW-A1J1-01A-11D-A13J-01 a9358498-02cf-4073-89bd-7c6add6e4120 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J1 TCGA-EW-A1J1-01A TCGA-EW-A1J1-01A-11D-A13J-01 a9358498-02cf-4073-89bd-7c6add6e4120 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D05_772086.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-EW-A1J1 TCGA-EW-A1J1-01A TCGA-EW-A1J1-01A-11D-A13J-01 a9358498-02cf-4073-89bd-7c6add6e4120 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D05_772086.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J1 TCGA-EW-A1J1-01A TCGA-EW-A1J1-01A-11D-A13J-01 a9358498-02cf-4073-89bd-7c6add6e4120 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D05_772086.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J1 TCGA-EW-A1J1-01A TCGA-EW-A1J1-01A-11D-A13J-01 a9358498-02cf-4073-89bd-7c6add6e4120 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D05_772086.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J1 TCGA-EW-A1J1-01A TCGA-EW-A1J1-01A-11D-A13J-01 a9358498-02cf-4073-89bd-7c6add6e4120 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D05_772086.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J1 TCGA-EW-A1J1-01A TCGA-EW-A1J1-01A-11D-A13J-01 a9358498-02cf-4073-89bd-7c6add6e4120 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D05_772086.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J1 TCGA-EW-A1J1-01A TCGA-EW-A1J1-01A-11D-A13J-01 a9358498-02cf-4073-89bd-7c6add6e4120 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D05_772086.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J1 TCGA-EW-A1J1-01A TCGA-EW-A1J1-01A-11D-A13J-01 a9358498-02cf-4073-89bd-7c6add6e4120 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_D05_772086.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-EW-A1J1 TCGA-EW-A1J1-01A TCGA-EW-A1J1-01A-11D-A13K-05 f0f04a4e-3be1-444a-adcf-66cf7fbc9a63 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J1 TCGA-EW-A1J1-01A TCGA-EW-A1J1-01A-11D-A13K-05 f0f04a4e-3be1-444a-adcf-66cf7fbc9a63 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818135_R01C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-EW-A1J1 TCGA-EW-A1J1-01A TCGA-EW-A1J1-01A-11D-A13K-05 f0f04a4e-3be1-444a-adcf-66cf7fbc9a63 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818135_R01C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-EW-A1J1 TCGA-EW-A1J1-01A TCGA-EW-A1J1-01A-11D-A13K-05 f0f04a4e-3be1-444a-adcf-66cf7fbc9a63 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-EW-A1J1-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-EW-A1J1 TCGA-EW-A1J1-01A TCGA-EW-A1J1-01A-11D-A13K-05 f0f04a4e-3be1-444a-adcf-66cf7fbc9a63 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-EW-A1J1-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-EW-A1J1 TCGA-EW-A1J1-01A TCGA-EW-A1J1-01A-11D-A13L-09 0b2f18f2-34c1-4424-bf7c-080ca87b8a8f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J1 TCGA-EW-A1J1-01A TCGA-EW-A1J1-01A-11D-A188-09 4b8d51b3-8393-45d4-a73d-3c22c561d6f3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J1 TCGA-EW-A1J1-01A TCGA-EW-A1J1-01A-11R-A13P-13 80cd5b9c-1a09-4159-b431-b3a4139b595c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J1 TCGA-EW-A1J1-01A TCGA-EW-A1J1-01A-11R-A13P-13 80cd5b9c-1a09-4159-b431-b3a4139b595c miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1J1-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1J1 TCGA-EW-A1J1-01A TCGA-EW-A1J1-01A-11R-A13P-13 80cd5b9c-1a09-4159-b431-b3a4139b595c miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1J1-01A-11R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1J1 TCGA-EW-A1J1-01A TCGA-EW-A1J1-01A-11R-A13Q-07 9d64aa0c-84a6-4e48-b28b-12aaf04813b6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J1 TCGA-EW-A1J1-01A TCGA-EW-A1J1-01A-11R-A13Q-07 9d64aa0c-84a6-4e48-b28b-12aaf04813b6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_512220.TCGA-EW-A1J1-01A-11R-A13Q-07.110829_UNC11-SN627_0148_BD0DGAABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1J1 TCGA-EW-A1J1-01A TCGA-EW-A1J1-01A-11R-A13Q-07 9d64aa0c-84a6-4e48-b28b-12aaf04813b6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_512255.TCGA-EW-A1J1-01A-11R-A13Q-07.110829_UNC11-SN627_0148_BD0DGAABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1J1 TCGA-EW-A1J1-01A TCGA-EW-A1J1-01A-11R-A13Q-07 9d64aa0c-84a6-4e48-b28b-12aaf04813b6 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_512340.TCGA-EW-A1J1-01A-11R-A13Q-07.110829_UNC11-SN627_0148_BD0DGAABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1J1 TCGA-EW-A1J1-01A TCGA-EW-A1J1-01A-11W-A14Q-09 a94b9185-c892-409b-841b-7b9d7844b194 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J1 TCGA-EW-A1J1-10A TCGA-EW-A1J1-10A-01D-A13M-02 7e4b7c49-ae23-4743-b63f-b15e0281425e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J1 TCGA-EW-A1J1-10A TCGA-EW-A1J1-10A-01D-A13N-01 38f3aa51-b4fe-4b63-8736-4050b7a48951 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J1 TCGA-EW-A1J1-10A TCGA-EW-A1J1-10A-01D-A13N-01 38f3aa51-b4fe-4b63-8736-4050b7a48951 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E06_772216.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-EW-A1J1 TCGA-EW-A1J1-10A TCGA-EW-A1J1-10A-01D-A13N-01 38f3aa51-b4fe-4b63-8736-4050b7a48951 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E06_772216.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J1 TCGA-EW-A1J1-10A TCGA-EW-A1J1-10A-01D-A13N-01 38f3aa51-b4fe-4b63-8736-4050b7a48951 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E06_772216.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J1 TCGA-EW-A1J1-10A TCGA-EW-A1J1-10A-01D-A13N-01 38f3aa51-b4fe-4b63-8736-4050b7a48951 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E06_772216.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J1 TCGA-EW-A1J1-10A TCGA-EW-A1J1-10A-01D-A13N-01 38f3aa51-b4fe-4b63-8736-4050b7a48951 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E06_772216.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J1 TCGA-EW-A1J1-10A TCGA-EW-A1J1-10A-01D-A13N-01 38f3aa51-b4fe-4b63-8736-4050b7a48951 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E06_772216.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-EW-A1J1 TCGA-EW-A1J1-10A TCGA-EW-A1J1-10A-01D-A13O-09 5f2693b0-9790-4841-91e4-aecc5cdccfec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J1 TCGA-EW-A1J1-10A TCGA-EW-A1J1-10A-01W-A14R-09 4946d4ac-ffdf-4f83-883a-e87c874a42c4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J2 TCGA-EW-A1J2-01A TCGA-EW-A1J2-01A-21D-A13I-02 6b876f5b-27ba-40d1-adf1-83f3b28b90db Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J2 TCGA-EW-A1J2-01A TCGA-EW-A1J2-01A-21D-A13J-01 92172c25-66d6-497f-b9cf-03945ba27acd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J2 TCGA-EW-A1J2-01A TCGA-EW-A1J2-01A-21D-A13J-01 92172c25-66d6-497f-b9cf-03945ba27acd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F10_772142.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-EW-A1J2 TCGA-EW-A1J2-01A TCGA-EW-A1J2-01A-21D-A13J-01 92172c25-66d6-497f-b9cf-03945ba27acd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F10_772142.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J2 TCGA-EW-A1J2-01A TCGA-EW-A1J2-01A-21D-A13J-01 92172c25-66d6-497f-b9cf-03945ba27acd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F10_772142.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J2 TCGA-EW-A1J2-01A TCGA-EW-A1J2-01A-21D-A13J-01 92172c25-66d6-497f-b9cf-03945ba27acd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F10_772142.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J2 TCGA-EW-A1J2-01A TCGA-EW-A1J2-01A-21D-A13J-01 92172c25-66d6-497f-b9cf-03945ba27acd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F10_772142.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J2 TCGA-EW-A1J2-01A TCGA-EW-A1J2-01A-21D-A13J-01 92172c25-66d6-497f-b9cf-03945ba27acd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F10_772142.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J2 TCGA-EW-A1J2-01A TCGA-EW-A1J2-01A-21D-A13J-01 92172c25-66d6-497f-b9cf-03945ba27acd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F10_772142.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J2 TCGA-EW-A1J2-01A TCGA-EW-A1J2-01A-21D-A13J-01 92172c25-66d6-497f-b9cf-03945ba27acd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F10_772142.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-EW-A1J2 TCGA-EW-A1J2-01A TCGA-EW-A1J2-01A-21D-A13K-05 b41c4682-d9a0-4563-b564-70a8a5a7b986 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J2 TCGA-EW-A1J2-01A TCGA-EW-A1J2-01A-21D-A13K-05 b41c4682-d9a0-4563-b564-70a8a5a7b986 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-EW-A1J2-01A-21D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-EW-A1J2 TCGA-EW-A1J2-01A TCGA-EW-A1J2-01A-21D-A13K-05 b41c4682-d9a0-4563-b564-70a8a5a7b986 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-EW-A1J2-01A-21D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-EW-A1J2 TCGA-EW-A1J2-01A TCGA-EW-A1J2-01A-21D-A13L-09 c906931e-dc1a-434c-96cd-58088762f1e7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J2 TCGA-EW-A1J2-01A TCGA-EW-A1J2-01A-21R-A13P-13 1410392b-e41b-4c90-b767-fe671ffdd63d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J2 TCGA-EW-A1J2-01A TCGA-EW-A1J2-01A-21R-A13P-13 1410392b-e41b-4c90-b767-fe671ffdd63d miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J2 TCGA-EW-A1J2-01A TCGA-EW-A1J2-01A-21R-A13Q-07 5a6b6013-11d0-498d-a014-3ea8e14c61d5 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_402090.TCGA-EW-A1J2-01A-21R-A13Q-07.110729_UNC15-SN850_0101_AD0DW6ABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1J2 TCGA-EW-A1J2-01A TCGA-EW-A1J2-01A-21R-A13Q-07 5a6b6013-11d0-498d-a014-3ea8e14c61d5 RNASeq IlluminaHiSeq_RNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J2 TCGA-EW-A1J2-10A TCGA-EW-A1J2-10A-01D-A13N-01 64384de6-2a71-4188-a062-bbf2c4a86799 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A11_772112.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-EW-A1J2 TCGA-EW-A1J2-10A TCGA-EW-A1J2-10A-01D-A13N-01 64384de6-2a71-4188-a062-bbf2c4a86799 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A11_772112.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-EW-A1J2 TCGA-EW-A1J2-10A TCGA-EW-A1J2-10A-01D-A13O-09 e5d87a6b-7836-494a-895e-24935d57cdcd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J2.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J2 TCGA-EW-A1J2-10A TCGA-EW-A1J2-10A-01W-A14R-09 97b9c0f4-a0c8-4237-ba88-cf1dc993b3ae Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E04_772186.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J3 TCGA-EW-A1J3-01A TCGA-EW-A1J3-01A-11D-A13J-01 f2f5bfd3-c9a3-4f3a-a7c9-ea412c46c589 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_E04_772186.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J3 TCGA-EW-A1J3-01A TCGA-EW-A1J3-01A-11D-A13J-01 f2f5bfd3-c9a3-4f3a-a7c9-ea412c46c589 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_400228.TCGA-EW-A1J3-01A-11R-A13Q-07.110802_UNC16-SN851_0066_AB09M4ABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1J3 TCGA-EW-A1J3-01A TCGA-EW-A1J3-01A-11R-A13Q-07 6e757a91-de03-4c2d-9088-22235e4b745a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_400232.TCGA-EW-A1J3-01A-11R-A13Q-07.110802_UNC16-SN851_0066_AB09M4ABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1J3 TCGA-EW-A1J3-01A TCGA-EW-A1J3-01A-11W-A14Q-09 35694d5b-9090-40f9-8280-453e959a87aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J3 TCGA-EW-A1J3-10A TCGA-EW-A1J3-10A-01D-A13M-02 60c991d8-8959-4eb3-8a6c-fff1fc36b772 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J3 TCGA-EW-A1J3-10A TCGA-EW-A1J3-10A-01D-A13N-01 a7528289-0052-4aaf-9034-0404e6144b7b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J3 TCGA-EW-A1J3-10A TCGA-EW-A1J3-10A-01D-A13N-01 a7528289-0052-4aaf-9034-0404e6144b7b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_G04_772104.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-EW-A1J3 TCGA-EW-A1J3-10A TCGA-EW-A1J3-10A-01D-A13N-01 a7528289-0052-4aaf-9034-0404e6144b7b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_G04_772104.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J3 TCGA-EW-A1J3-10A TCGA-EW-A1J3-10A-01D-A13N-01 a7528289-0052-4aaf-9034-0404e6144b7b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_G04_772104.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J3 TCGA-EW-A1J3-10A TCGA-EW-A1J3-10A-01D-A13N-01 a7528289-0052-4aaf-9034-0404e6144b7b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_G04_772104.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J3 TCGA-EW-A1J3-10A TCGA-EW-A1J3-10A-01D-A13N-01 a7528289-0052-4aaf-9034-0404e6144b7b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_G04_772104.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J3 TCGA-EW-A1J3-10A TCGA-EW-A1J3-10A-01D-A13N-01 a7528289-0052-4aaf-9034-0404e6144b7b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_G04_772104.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J3 TCGA-EW-A1J3-10A TCGA-EW-A1J3-10A-01D-A13N-01 a7528289-0052-4aaf-9034-0404e6144b7b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_G04_772104.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J3 TCGA-EW-A1J3-10A TCGA-EW-A1J3-10A-01D-A13N-01 a7528289-0052-4aaf-9034-0404e6144b7b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_G04_772104.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-EW-A1J3 TCGA-EW-A1J3-10A TCGA-EW-A1J3-10A-01D-A13O-09 3e0f2e32-d64a-416a-be72-eb34ff190ed6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J3 TCGA-EW-A1J3-10A TCGA-EW-A1J3-10A-01W-A14R-09 df16ad99-5ac5-4e29-841f-518b89b4263b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J5 TCGA-EW-A1J5-01A TCGA-EW-A1J5-01A-11D-A13I-02 e1d02bf1-9eab-43b7-920b-9cb3afc14c96 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J5 TCGA-EW-A1J5-01A TCGA-EW-A1J5-01A-11D-A13J-01 8069f916-9d52-4a2c-b30d-3f10e520e1e1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J5 TCGA-EW-A1J5-01A TCGA-EW-A1J5-01A-11D-A13J-01 8069f916-9d52-4a2c-b30d-3f10e520e1e1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B12_772088.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-EW-A1J5 TCGA-EW-A1J5-01A TCGA-EW-A1J5-01A-11D-A13J-01 8069f916-9d52-4a2c-b30d-3f10e520e1e1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B12_772088.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J5 TCGA-EW-A1J5-01A TCGA-EW-A1J5-01A-11D-A13J-01 8069f916-9d52-4a2c-b30d-3f10e520e1e1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B12_772088.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J5 TCGA-EW-A1J5-01A TCGA-EW-A1J5-01A-11D-A13J-01 8069f916-9d52-4a2c-b30d-3f10e520e1e1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B12_772088.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J5 TCGA-EW-A1J5-01A TCGA-EW-A1J5-01A-11D-A13J-01 8069f916-9d52-4a2c-b30d-3f10e520e1e1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B12_772088.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J5 TCGA-EW-A1J5-01A TCGA-EW-A1J5-01A-11D-A13J-01 8069f916-9d52-4a2c-b30d-3f10e520e1e1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B12_772088.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J5 TCGA-EW-A1J5-01A TCGA-EW-A1J5-01A-11D-A13J-01 8069f916-9d52-4a2c-b30d-3f10e520e1e1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B12_772088.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J5 TCGA-EW-A1J5-01A TCGA-EW-A1J5-01A-11D-A13J-01 8069f916-9d52-4a2c-b30d-3f10e520e1e1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B12_772088.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-EW-A1J5 TCGA-EW-A1J5-01A TCGA-EW-A1J5-01A-11D-A13K-05 ef3a20b1-9563-4803-aab9-20fda2f1b764 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J5 TCGA-EW-A1J5-01A TCGA-EW-A1J5-01A-11D-A13K-05 ef3a20b1-9563-4803-aab9-20fda2f1b764 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J5 TCGA-EW-A1J5-01A TCGA-EW-A1J5-01A-11R-A13P-13 aabeade1-4d2d-4b00-8f65-7aace50d93f3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J5 TCGA-EW-A1J5-01A TCGA-EW-A1J5-01A-11R-A13P-13 aabeade1-4d2d-4b00-8f65-7aace50d93f3 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J5 TCGA-EW-A1J5-10A TCGA-EW-A1J5-10A-01D-A13N-01 f3afe279-4f3c-4728-8528-07d5313fb1e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F01_772040.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-EW-A1J5 TCGA-EW-A1J5-10A TCGA-EW-A1J5-10A-01D-A13N-01 f3afe279-4f3c-4728-8528-07d5313fb1e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F01_772040.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J5 TCGA-EW-A1J5-10A TCGA-EW-A1J5-10A-01D-A13N-01 f3afe279-4f3c-4728-8528-07d5313fb1e6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F01_772040.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J5 TCGA-EW-A1J5-10A TCGA-EW-A1J5-10A-01D-A13N-01 f3afe279-4f3c-4728-8528-07d5313fb1e6 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_F01_772040.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-EW-A1J5 TCGA-EW-A1J5-10A TCGA-EW-A1J5-10A-01D-A13O-09 d0c5457b-7ba5-4482-acc8-edc375e0e121 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J5 TCGA-EW-A1J5-10A TCGA-EW-A1J5-10A-01W-A14R-09 bb04bb13-cec7-4ba3-86e7-77d4caa5a8a7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J6 TCGA-EW-A1J6-01A TCGA-EW-A1J6-01A-11D-A13I-02 761c165c-75bc-4921-9775-5c007796b85f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J6 TCGA-EW-A1J6-01A TCGA-EW-A1J6-01A-11D-A13J-01 64cc469d-eaf1-4a4e-853e-612c931c28b6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J6 TCGA-EW-A1J6-01A TCGA-EW-A1J6-01A-11D-A13J-01 64cc469d-eaf1-4a4e-853e-612c931c28b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B05_772056.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-EW-A1J6 TCGA-EW-A1J6-01A TCGA-EW-A1J6-01A-11D-A13J-01 64cc469d-eaf1-4a4e-853e-612c931c28b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B05_772056.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J6 TCGA-EW-A1J6-01A TCGA-EW-A1J6-01A-11D-A13J-01 64cc469d-eaf1-4a4e-853e-612c931c28b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B05_772056.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J6 TCGA-EW-A1J6-01A TCGA-EW-A1J6-01A-11D-A13J-01 64cc469d-eaf1-4a4e-853e-612c931c28b6 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B05_772056.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J6 TCGA-EW-A1J6-01A TCGA-EW-A1J6-01A-11D-A13J-01 64cc469d-eaf1-4a4e-853e-612c931c28b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B05_772056.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J6 TCGA-EW-A1J6-01A TCGA-EW-A1J6-01A-11D-A13J-01 64cc469d-eaf1-4a4e-853e-612c931c28b6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_B05_772056.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-EW-A1J6 TCGA-EW-A1J6-01A TCGA-EW-A1J6-01A-11D-A13K-05 4733a477-9e26-4dc7-bf6d-adbb6e01b17e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J6 TCGA-EW-A1J6-01A TCGA-EW-A1J6-01A-11D-A13K-05 4733a477-9e26-4dc7-bf6d-adbb6e01b17e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818132_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-EW-A1J6 TCGA-EW-A1J6-01A TCGA-EW-A1J6-01A-11D-A13K-05 4733a477-9e26-4dc7-bf6d-adbb6e01b17e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0/6026818132_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.9.1.0 109 07-NOV-11 04.38.10.022000000 PM TCGA-EW-A1J6 TCGA-EW-A1J6-01A TCGA-EW-A1J6-01A-11D-A13K-05 4733a477-9e26-4dc7-bf6d-adbb6e01b17e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-2.TCGA-EW-A1J6-01A-11D-A13K-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.9.1.0 109 07-NOV-11 06.21.23.845000000 PM TCGA-EW-A1J6 TCGA-EW-A1J6-01A TCGA-EW-A1J6-01A-11D-A13K-05 4733a477-9e26-4dc7-bf6d-adbb6e01b17e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0/jhu-usc.edu_BRCA.HumanMethylation450.9.lvl-3.TCGA-EW-A1J6-01A-11D-A13K-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.9.1.0 109 07-NOV-11 06.02.03.579000000 PM TCGA-EW-A1J6 TCGA-EW-A1J6-01A TCGA-EW-A1J6-01A-11D-A13L-09 9272644e-9be7-4322-86f1-3ad44fb75951 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J6 TCGA-EW-A1J6-01A TCGA-EW-A1J6-01A-11D-A188-09 d95c5cb1-d081-47fa-8ac0-1ade7652a0af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J6 TCGA-EW-A1J6-01A TCGA-EW-A1J6-01A-11R-A13P-13 a09f78da-4397-42a0-9ff4-5f386dcdd46f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J6 TCGA-EW-A1J6-01A TCGA-EW-A1J6-01A-11R-A13P-13 a09f78da-4397-42a0-9ff4-5f386dcdd46f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1J6-01A-11R-A13P-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1J6 TCGA-EW-A1J6-01A TCGA-EW-A1J6-01A-11R-A13P-13 a09f78da-4397-42a0-9ff4-5f386dcdd46f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1J6-01A-11R-A13P-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 109 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1J6 TCGA-EW-A1J6-01A TCGA-EW-A1J6-01A-11R-A13Q-07 7051836f-e1d4-49dd-8118-4541c0bdde57 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J6 TCGA-EW-A1J6-01A TCGA-EW-A1J6-01A-11R-A13Q-07 7051836f-e1d4-49dd-8118-4541c0bdde57 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_399721.TCGA-EW-A1J6-01A-11R-A13Q-07.110802_UNC16-SN851_0067_BB07W5ABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1J6 TCGA-EW-A1J6-01A TCGA-EW-A1J6-01A-11R-A13Q-07 7051836f-e1d4-49dd-8118-4541c0bdde57 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_399769.TCGA-EW-A1J6-01A-11R-A13Q-07.110802_UNC16-SN851_0067_BB07W5ABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1J6 TCGA-EW-A1J6-01A TCGA-EW-A1J6-01A-11R-A13Q-07 7051836f-e1d4-49dd-8118-4541c0bdde57 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_399790.TCGA-EW-A1J6-01A-11R-A13Q-07.110802_UNC16-SN851_0067_BB07W5ABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 109 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1J6 TCGA-EW-A1J6-01A TCGA-EW-A1J6-01A-11W-A14Q-09 be73a500-a638-447e-90ff-d3b73e5277ea Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J6 TCGA-EW-A1J6-10A TCGA-EW-A1J6-10A-01D-A13M-02 43f22ec7-9f3a-4cef-99b0-8b7995e5b454 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J6 TCGA-EW-A1J6-10A TCGA-EW-A1J6-10A-01D-A13N-01 e8927104-65f6-4544-b5c5-c72cf341a272 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J6 TCGA-EW-A1J6-10A TCGA-EW-A1J6-10A-01D-A13N-01 e8927104-65f6-4544-b5c5-c72cf341a272 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A09_772060.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.109.1008.0 109 07-DEC-11 11.18.34.140000000 AM TCGA-EW-A1J6 TCGA-EW-A1J6-10A TCGA-EW-A1J6-10A-01D-A13N-01 e8927104-65f6-4544-b5c5-c72cf341a272 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A09_772060.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J6 TCGA-EW-A1J6-10A TCGA-EW-A1J6-10A-01D-A13N-01 e8927104-65f6-4544-b5c5-c72cf341a272 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A09_772060.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J6 TCGA-EW-A1J6-10A TCGA-EW-A1J6-10A-01D-A13N-01 e8927104-65f6-4544-b5c5-c72cf341a272 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A09_772060.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J6 TCGA-EW-A1J6-10A TCGA-EW-A1J6-10A-01D-A13N-01 e8927104-65f6-4544-b5c5-c72cf341a272 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A09_772060.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J6 TCGA-EW-A1J6-10A TCGA-EW-A1J6-10A-01D-A13N-01 e8927104-65f6-4544-b5c5-c72cf341a272 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A09_772060.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J6 TCGA-EW-A1J6-10A TCGA-EW-A1J6-10A-01D-A13N-01 e8927104-65f6-4544-b5c5-c72cf341a272 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A09_772060.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.109.1008.0 109 07-DEC-11 11.53.09.920000000 AM TCGA-EW-A1J6 TCGA-EW-A1J6-10A TCGA-EW-A1J6-10A-01D-A13N-01 e8927104-65f6-4544-b5c5-c72cf341a272 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A09_772060.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.109.1008.0 109 07-DEC-11 01.00.00.049000000 PM TCGA-EW-A1J6 TCGA-EW-A1J6-10A TCGA-EW-A1J6-10A-01D-A13O-09 59bd462d-a2b2-4736-9a1f-f5658c82e15f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1J6 TCGA-EW-A1J6-10A TCGA-EW-A1J6-10A-01W-A14R-09 8b4a4adf-7522-4f5d-9e88-b47d65508a4e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.109.20.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1J6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.109.20.0 109 01-FEB-12 04.44.32.169000000 PM TCGA-EW-A1OV TCGA-EW-A1OV-01A TCGA-EW-A1OV-01A-11D-A140-02 f6194d8e-2f5b-4b25-a08a-ffdaafbf93fb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OV TCGA-EW-A1OV-01A TCGA-EW-A1OV-01A-11D-A141-01 5ffeb466-cd09-441c-a635-9feea1d71ff4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OV TCGA-EW-A1OV-01A TCGA-EW-A1OV-01A-11D-A141-01 5ffeb466-cd09-441c-a635-9feea1d71ff4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F02_777994.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1OV TCGA-EW-A1OV-01A TCGA-EW-A1OV-01A-11D-A141-01 5ffeb466-cd09-441c-a635-9feea1d71ff4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F02_777994.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OV TCGA-EW-A1OV-01A TCGA-EW-A1OV-01A-11D-A141-01 5ffeb466-cd09-441c-a635-9feea1d71ff4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F02_777994.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OV TCGA-EW-A1OV-01A TCGA-EW-A1OV-01A-11D-A141-01 5ffeb466-cd09-441c-a635-9feea1d71ff4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F02_777994.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OV TCGA-EW-A1OV-01A TCGA-EW-A1OV-01A-11D-A141-01 5ffeb466-cd09-441c-a635-9feea1d71ff4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F02_777994.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OV TCGA-EW-A1OV-01A TCGA-EW-A1OV-01A-11D-A141-01 5ffeb466-cd09-441c-a635-9feea1d71ff4 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F02_777994.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OV TCGA-EW-A1OV-01A TCGA-EW-A1OV-01A-11D-A141-01 5ffeb466-cd09-441c-a635-9feea1d71ff4 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OV TCGA-EW-A1OV-01A TCGA-EW-A1OV-01A-11D-A145-05 4815118b-6826-465c-95e2-851ef5c169fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OV TCGA-EW-A1OV-01A TCGA-EW-A1OV-01A-11D-A145-05 4815118b-6826-465c-95e2-851ef5c169fd DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-EW-A1OV-01A-11D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-EW-A1OV TCGA-EW-A1OV-01A TCGA-EW-A1OV-01A-11D-A145-05 4815118b-6826-465c-95e2-851ef5c169fd DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-EW-A1OV-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-EW-A1OV TCGA-EW-A1OV-01A TCGA-EW-A1OV-01A-11R-A143-13 cb7a206b-5990-4a4e-98a4-aed175bcbb76 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OV TCGA-EW-A1OV-01A TCGA-EW-A1OV-01A-11R-A143-13 cb7a206b-5990-4a4e-98a4-aed175bcbb76 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1OV-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1OV TCGA-EW-A1OV-01A TCGA-EW-A1OV-01A-11R-A143-13 cb7a206b-5990-4a4e-98a4-aed175bcbb76 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_836337.TCGA-EW-A1OV-01A-11R-A144-07.110810_UNC10-SN254_0263_AB09WEABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1OV TCGA-EW-A1OV-01A TCGA-EW-A1OV-01A-11R-A144-07 b21367b5-91a3-4546-ba89-e33c462cb75b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_836381.TCGA-EW-A1OV-01A-11R-A144-07.110810_UNC10-SN254_0263_AB09WEABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1OV TCGA-EW-A1OV-01A TCGA-EW-A1OV-01A-11R-A144-07 b21367b5-91a3-4546-ba89-e33c462cb75b RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_836568.TCGA-EW-A1OV-01A-11R-A144-07.110810_UNC10-SN254_0263_AB09WEABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1OV TCGA-EW-A1OV-01A TCGA-EW-A1OV-01A-11W-A187-09 50020ffa-19af-46df-a43c-7792b33af091 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OV TCGA-EW-A1OV-10A TCGA-EW-A1OV-10A-01D-A140-02 d6ed1c38-17df-4202-89a4-71cf8fff2e16 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OV TCGA-EW-A1OV-10A TCGA-EW-A1OV-10A-01D-A141-01 ed14dede-3918-47ca-ab23-c5c9eb16f0f7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OV TCGA-EW-A1OV-10A TCGA-EW-A1OV-10A-01D-A141-01 ed14dede-3918-47ca-ab23-c5c9eb16f0f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G08_778140.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1OV TCGA-EW-A1OV-10A TCGA-EW-A1OV-10A-01D-A141-01 ed14dede-3918-47ca-ab23-c5c9eb16f0f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G08_778140.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OV TCGA-EW-A1OV-10A TCGA-EW-A1OV-10A-01D-A141-01 ed14dede-3918-47ca-ab23-c5c9eb16f0f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G08_778140.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OV TCGA-EW-A1OV-10A TCGA-EW-A1OV-10A-01D-A141-01 ed14dede-3918-47ca-ab23-c5c9eb16f0f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G08_778140.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OV TCGA-EW-A1OV-10A TCGA-EW-A1OV-10A-01D-A141-01 ed14dede-3918-47ca-ab23-c5c9eb16f0f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G08_778140.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OV TCGA-EW-A1OV-10A TCGA-EW-A1OV-10A-01D-A141-01 ed14dede-3918-47ca-ab23-c5c9eb16f0f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G08_778140.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OV TCGA-EW-A1OV-10A TCGA-EW-A1OV-10A-01D-A141-01 ed14dede-3918-47ca-ab23-c5c9eb16f0f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G08_778140.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OV TCGA-EW-A1OV-10A TCGA-EW-A1OV-10A-01D-A141-01 ed14dede-3918-47ca-ab23-c5c9eb16f0f7 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G08_778140.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1OV TCGA-EW-A1OV-10A TCGA-EW-A1OV-10A-01D-A142-09 39d05c29-a4bb-4b5f-a818-c94045721134 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OV TCGA-EW-A1OV-10A TCGA-EW-A1OV-10A-01W-A187-09 d796b58c-56d7-4900-a683-9ee06550259f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OW TCGA-EW-A1OW-01A TCGA-EW-A1OW-01A-21D-A140-02 3d2af3ec-3c19-4c8c-9e1e-9e1503427f97 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OW TCGA-EW-A1OW-01A TCGA-EW-A1OW-01A-21D-A141-01 0941a978-c8aa-467b-8464-9f979d1f0418 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OW TCGA-EW-A1OW-01A TCGA-EW-A1OW-01A-21D-A141-01 0941a978-c8aa-467b-8464-9f979d1f0418 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G10_778062.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1OW TCGA-EW-A1OW-01A TCGA-EW-A1OW-01A-21D-A141-01 0941a978-c8aa-467b-8464-9f979d1f0418 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G10_778062.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OW TCGA-EW-A1OW-01A TCGA-EW-A1OW-01A-21D-A141-01 0941a978-c8aa-467b-8464-9f979d1f0418 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G10_778062.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OW TCGA-EW-A1OW-01A TCGA-EW-A1OW-01A-21D-A141-01 0941a978-c8aa-467b-8464-9f979d1f0418 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G10_778062.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OW TCGA-EW-A1OW-01A TCGA-EW-A1OW-01A-21D-A141-01 0941a978-c8aa-467b-8464-9f979d1f0418 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G10_778062.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OW TCGA-EW-A1OW-01A TCGA-EW-A1OW-01A-21D-A141-01 0941a978-c8aa-467b-8464-9f979d1f0418 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G10_778062.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OW TCGA-EW-A1OW-01A TCGA-EW-A1OW-01A-21D-A141-01 0941a978-c8aa-467b-8464-9f979d1f0418 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G10_778062.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OW TCGA-EW-A1OW-01A TCGA-EW-A1OW-01A-21D-A141-01 0941a978-c8aa-467b-8464-9f979d1f0418 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G10_778062.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1OW TCGA-EW-A1OW-01A TCGA-EW-A1OW-01A-21D-A142-09 ab29532d-7f22-46e0-902e-3222c237eedd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OW TCGA-EW-A1OW-01A TCGA-EW-A1OW-01A-21D-A145-05 591c1d24-627a-4b3b-9d4d-31e678d6cfdb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OW TCGA-EW-A1OW-01A TCGA-EW-A1OW-01A-21D-A145-05 591c1d24-627a-4b3b-9d4d-31e678d6cfdb DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818111_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1OW TCGA-EW-A1OW-01A TCGA-EW-A1OW-01A-21D-A145-05 591c1d24-627a-4b3b-9d4d-31e678d6cfdb DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818111_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1OW TCGA-EW-A1OW-01A TCGA-EW-A1OW-01A-21D-A145-05 591c1d24-627a-4b3b-9d4d-31e678d6cfdb DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-EW-A1OW-01A-21D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-EW-A1OW TCGA-EW-A1OW-01A TCGA-EW-A1OW-01A-21D-A145-05 591c1d24-627a-4b3b-9d4d-31e678d6cfdb DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-EW-A1OW-01A-21D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-EW-A1OW TCGA-EW-A1OW-01A TCGA-EW-A1OW-01A-21R-A143-13 811328f6-4779-4f8c-9d00-987cd1804f1f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OW TCGA-EW-A1OW-01A TCGA-EW-A1OW-01A-21R-A144-07 21cc5775-0987-4088-b19c-86bf43f09bb2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OW TCGA-EW-A1OW-01A TCGA-EW-A1OW-01A-21R-A144-07 21cc5775-0987-4088-b19c-86bf43f09bb2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_835993.TCGA-EW-A1OW-01A-21R-A144-07.110810_UNC10-SN254_0263_AB09WEABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1OW TCGA-EW-A1OW-01A TCGA-EW-A1OW-01A-21R-A144-07 21cc5775-0987-4088-b19c-86bf43f09bb2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_835996.TCGA-EW-A1OW-01A-21R-A144-07.110810_UNC10-SN254_0263_AB09WEABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1OW TCGA-EW-A1OW-01A TCGA-EW-A1OW-01A-21R-A144-07 21cc5775-0987-4088-b19c-86bf43f09bb2 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_836035.TCGA-EW-A1OW-01A-21R-A144-07.110810_UNC10-SN254_0263_AB09WEABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1OW TCGA-EW-A1OW-01A TCGA-EW-A1OW-01A-21W-A187-09 9ef884db-2acf-4f9f-832e-01d1efbadf85 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OW TCGA-EW-A1OW-10A TCGA-EW-A1OW-10A-01D-A140-02 0912dbf5-dba6-406e-8a8d-911c9a81272e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OW TCGA-EW-A1OW-10A TCGA-EW-A1OW-10A-01D-A141-01 d50f04b2-c841-4a9e-b1ea-67058dda75fb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B02_778056.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B02_778056.ismpolish.data.txt'. TCGA-EW-A1OW TCGA-EW-A1OW-10A TCGA-EW-A1OW-10A-01D-A141-01 d50f04b2-c841-4a9e-b1ea-67058dda75fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B02_778056.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B02_778056.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B02_778056.ismpolish.data.txt'. TCGA-EW-A1OW TCGA-EW-A1OW-10A TCGA-EW-A1OW-10A-01D-A141-01 d50f04b2-c841-4a9e-b1ea-67058dda75fb SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B02_778056.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B02_778056.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B02_778056.ismpolish.data.txt'. TCGA-EW-A1OW TCGA-EW-A1OW-10A TCGA-EW-A1OW-10A-01D-A142-09 7647e7c3-4d1b-4e7e-b899-533c4735ae1b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OW TCGA-EW-A1OW-10A TCGA-EW-A1OW-10A-01W-A187-09 88cc54bd-5b3b-458a-9929-4be8f969911c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OX TCGA-EW-A1OX-01A TCGA-EW-A1OX-01A-11D-A140-02 168ae854-cbea-49e2-a4c9-898c40053407 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OX TCGA-EW-A1OX-01A TCGA-EW-A1OX-01A-11D-A141-01 d6e0a8bc-62cf-476a-8528-9a6e7b98871f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OX TCGA-EW-A1OX-01A TCGA-EW-A1OX-01A-11D-A141-01 d6e0a8bc-62cf-476a-8528-9a6e7b98871f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D06_777972.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1OX TCGA-EW-A1OX-01A TCGA-EW-A1OX-01A-11D-A141-01 d6e0a8bc-62cf-476a-8528-9a6e7b98871f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D06_777972.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OX TCGA-EW-A1OX-01A TCGA-EW-A1OX-01A-11D-A141-01 d6e0a8bc-62cf-476a-8528-9a6e7b98871f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D06_777972.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OX TCGA-EW-A1OX-01A TCGA-EW-A1OX-01A-11D-A141-01 d6e0a8bc-62cf-476a-8528-9a6e7b98871f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D06_777972.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OX TCGA-EW-A1OX-01A TCGA-EW-A1OX-01A-11D-A141-01 d6e0a8bc-62cf-476a-8528-9a6e7b98871f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D06_777972.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OX TCGA-EW-A1OX-01A TCGA-EW-A1OX-01A-11D-A141-01 d6e0a8bc-62cf-476a-8528-9a6e7b98871f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D06_777972.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OX TCGA-EW-A1OX-01A TCGA-EW-A1OX-01A-11D-A141-01 d6e0a8bc-62cf-476a-8528-9a6e7b98871f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D06_777972.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OX TCGA-EW-A1OX-01A TCGA-EW-A1OX-01A-11D-A141-01 d6e0a8bc-62cf-476a-8528-9a6e7b98871f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D06_777972.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1OX TCGA-EW-A1OX-01A TCGA-EW-A1OX-01A-11D-A142-09 7828f9cf-aa93-44a0-8070-efdf90a677f0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OX TCGA-EW-A1OX-01A TCGA-EW-A1OX-01A-11D-A145-05 a325ccfa-e021-47ef-a0c1-64aaa952ecb4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OX TCGA-EW-A1OX-01A TCGA-EW-A1OX-01A-11D-A145-05 a325ccfa-e021-47ef-a0c1-64aaa952ecb4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818102_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1OX TCGA-EW-A1OX-01A TCGA-EW-A1OX-01A-11D-A145-05 a325ccfa-e021-47ef-a0c1-64aaa952ecb4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818102_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1OX TCGA-EW-A1OX-01A TCGA-EW-A1OX-01A-11D-A145-05 a325ccfa-e021-47ef-a0c1-64aaa952ecb4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-EW-A1OX-01A-11D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-EW-A1OX TCGA-EW-A1OX-01A TCGA-EW-A1OX-01A-11D-A145-05 a325ccfa-e021-47ef-a0c1-64aaa952ecb4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-EW-A1OX-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-EW-A1OX TCGA-EW-A1OX-01A TCGA-EW-A1OX-01A-11R-A143-13 629b7804-d436-4476-a4c9-ec69a8430904 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OX TCGA-EW-A1OX-01A TCGA-EW-A1OX-01A-11R-A143-13 629b7804-d436-4476-a4c9-ec69a8430904 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1OX-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1OX TCGA-EW-A1OX-01A TCGA-EW-A1OX-01A-11R-A143-13 629b7804-d436-4476-a4c9-ec69a8430904 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1OX-01A-11R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1OX TCGA-EW-A1OX-01A TCGA-EW-A1OX-01A-11R-A144-07 9b5d680e-5662-442c-a8ab-5fd16551b23e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OX TCGA-EW-A1OX-01A TCGA-EW-A1OX-01A-11R-A144-07 9b5d680e-5662-442c-a8ab-5fd16551b23e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_482238.TCGA-EW-A1OX-01A-11R-A144-07.110810_UNC10-SN254_0263_AB09WEABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1OX TCGA-EW-A1OX-01A TCGA-EW-A1OX-01A-11R-A144-07 9b5d680e-5662-442c-a8ab-5fd16551b23e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_482253.TCGA-EW-A1OX-01A-11R-A144-07.110810_UNC10-SN254_0263_AB09WEABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1OX TCGA-EW-A1OX-01A TCGA-EW-A1OX-01A-11R-A144-07 9b5d680e-5662-442c-a8ab-5fd16551b23e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_482375.TCGA-EW-A1OX-01A-11R-A144-07.110810_UNC10-SN254_0263_AB09WEABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1OX TCGA-EW-A1OX-01A TCGA-EW-A1OX-01A-11W-A187-09 796f564f-ebf5-4eae-aff3-649056fca2cc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OX TCGA-EW-A1OX-10A TCGA-EW-A1OX-10A-01D-A140-02 4ff3a2ce-831c-4120-b4a6-68fdd6e8995b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OX TCGA-EW-A1OX-10A TCGA-EW-A1OX-10A-01D-A141-01 ec0e8557-b5bf-4bf5-b634-e23b74beeee0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OX TCGA-EW-A1OX-10A TCGA-EW-A1OX-10A-01D-A141-01 ec0e8557-b5bf-4bf5-b634-e23b74beeee0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B06_778130.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1OX TCGA-EW-A1OX-10A TCGA-EW-A1OX-10A-01D-A141-01 ec0e8557-b5bf-4bf5-b634-e23b74beeee0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B06_778130.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OX TCGA-EW-A1OX-10A TCGA-EW-A1OX-10A-01D-A141-01 ec0e8557-b5bf-4bf5-b634-e23b74beeee0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B06_778130.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OX TCGA-EW-A1OX-10A TCGA-EW-A1OX-10A-01D-A141-01 ec0e8557-b5bf-4bf5-b634-e23b74beeee0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B06_778130.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OX TCGA-EW-A1OX-10A TCGA-EW-A1OX-10A-01D-A141-01 ec0e8557-b5bf-4bf5-b634-e23b74beeee0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B06_778130.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OX TCGA-EW-A1OX-10A TCGA-EW-A1OX-10A-01D-A141-01 ec0e8557-b5bf-4bf5-b634-e23b74beeee0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B06_778130.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OX TCGA-EW-A1OX-10A TCGA-EW-A1OX-10A-01D-A141-01 ec0e8557-b5bf-4bf5-b634-e23b74beeee0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B06_778130.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OX TCGA-EW-A1OX-10A TCGA-EW-A1OX-10A-01D-A141-01 ec0e8557-b5bf-4bf5-b634-e23b74beeee0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B06_778130.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1OX TCGA-EW-A1OX-10A TCGA-EW-A1OX-10A-01D-A142-09 f4652fab-76cf-4fde-8a9d-9e11fa8e7228 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OX TCGA-EW-A1OX-10A TCGA-EW-A1OX-10A-01W-A187-09 0837e358-deba-46dd-a12f-3d816b11eaf5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OX.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OY TCGA-EW-A1OY-01A TCGA-EW-A1OY-01A-11D-A140-02 012094ad-98a4-44d4-ace9-8e30463e9694 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OY TCGA-EW-A1OY-01A TCGA-EW-A1OY-01A-11D-A141-01 5c54e392-615a-4904-b3a4-d50ed00a8f73 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OY TCGA-EW-A1OY-01A TCGA-EW-A1OY-01A-11D-A141-01 5c54e392-615a-4904-b3a4-d50ed00a8f73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_H01_778044.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1OY TCGA-EW-A1OY-01A TCGA-EW-A1OY-01A-11D-A141-01 5c54e392-615a-4904-b3a4-d50ed00a8f73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_H01_778044.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OY TCGA-EW-A1OY-01A TCGA-EW-A1OY-01A-11D-A141-01 5c54e392-615a-4904-b3a4-d50ed00a8f73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_H01_778044.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OY TCGA-EW-A1OY-01A TCGA-EW-A1OY-01A-11D-A141-01 5c54e392-615a-4904-b3a4-d50ed00a8f73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_H01_778044.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OY TCGA-EW-A1OY-01A TCGA-EW-A1OY-01A-11D-A141-01 5c54e392-615a-4904-b3a4-d50ed00a8f73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_H01_778044.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OY TCGA-EW-A1OY-01A TCGA-EW-A1OY-01A-11D-A141-01 5c54e392-615a-4904-b3a4-d50ed00a8f73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_H01_778044.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OY TCGA-EW-A1OY-01A TCGA-EW-A1OY-01A-11D-A141-01 5c54e392-615a-4904-b3a4-d50ed00a8f73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_H01_778044.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OY TCGA-EW-A1OY-01A TCGA-EW-A1OY-01A-11D-A141-01 5c54e392-615a-4904-b3a4-d50ed00a8f73 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_H01_778044.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1OY TCGA-EW-A1OY-01A TCGA-EW-A1OY-01A-11D-A142-09 925323a2-ca03-48f4-8c37-1a8a6f8a6daa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OY TCGA-EW-A1OY-01A TCGA-EW-A1OY-01A-11D-A145-05 f0ca9bd3-dd78-4b4a-8c15-3656378aae82 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OY TCGA-EW-A1OY-01A TCGA-EW-A1OY-01A-11D-A145-05 f0ca9bd3-dd78-4b4a-8c15-3656378aae82 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818102_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1OY TCGA-EW-A1OY-01A TCGA-EW-A1OY-01A-11D-A145-05 f0ca9bd3-dd78-4b4a-8c15-3656378aae82 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818102_R06C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1OY TCGA-EW-A1OY-01A TCGA-EW-A1OY-01A-11D-A145-05 f0ca9bd3-dd78-4b4a-8c15-3656378aae82 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-EW-A1OY-01A-11D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-EW-A1OY TCGA-EW-A1OY-01A TCGA-EW-A1OY-01A-11D-A145-05 f0ca9bd3-dd78-4b4a-8c15-3656378aae82 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-EW-A1OY-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-EW-A1OY TCGA-EW-A1OY-01A TCGA-EW-A1OY-01A-11R-A143-13 4235a8ae-665d-4cf2-990f-be086554c5dd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OY TCGA-EW-A1OY-01A TCGA-EW-A1OY-01A-11R-A143-13 4235a8ae-665d-4cf2-990f-be086554c5dd miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1OY-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1OY TCGA-EW-A1OY-01A TCGA-EW-A1OY-01A-11R-A143-13 4235a8ae-665d-4cf2-990f-be086554c5dd miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1OY-01A-11R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1OY TCGA-EW-A1OY-01A TCGA-EW-A1OY-01A-11R-A144-07 0c3f0857-32d7-4ef6-b303-6e452ee04516 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OY TCGA-EW-A1OY-01A TCGA-EW-A1OY-01A-11R-A144-07 0c3f0857-32d7-4ef6-b303-6e452ee04516 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_835994.TCGA-EW-A1OY-01A-11R-A144-07.110810_UNC10-SN254_0263_AB09WEABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1OY TCGA-EW-A1OY-01A TCGA-EW-A1OY-01A-11R-A144-07 0c3f0857-32d7-4ef6-b303-6e452ee04516 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_836006.TCGA-EW-A1OY-01A-11R-A144-07.110810_UNC10-SN254_0263_AB09WEABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1OY TCGA-EW-A1OY-01A TCGA-EW-A1OY-01A-11R-A144-07 0c3f0857-32d7-4ef6-b303-6e452ee04516 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_836057.TCGA-EW-A1OY-01A-11R-A144-07.110810_UNC10-SN254_0263_AB09WEABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1OY TCGA-EW-A1OY-01A TCGA-EW-A1OY-01A-11W-A187-09 c1a3dd47-6029-4054-90a0-0c211e62cc70 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OY TCGA-EW-A1OY-10A TCGA-EW-A1OY-10A-01D-A140-02 9a6bf757-79b6-47c5-baf9-7f865dc8fc3b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OY TCGA-EW-A1OY-10A TCGA-EW-A1OY-10A-01D-A141-01 02e56a7d-9169-4beb-9a82-b91122b466e3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OY TCGA-EW-A1OY-10A TCGA-EW-A1OY-10A-01D-A141-01 02e56a7d-9169-4beb-9a82-b91122b466e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D11_777966.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1OY TCGA-EW-A1OY-10A TCGA-EW-A1OY-10A-01D-A141-01 02e56a7d-9169-4beb-9a82-b91122b466e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D11_777966.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OY TCGA-EW-A1OY-10A TCGA-EW-A1OY-10A-01D-A141-01 02e56a7d-9169-4beb-9a82-b91122b466e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D11_777966.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OY TCGA-EW-A1OY-10A TCGA-EW-A1OY-10A-01D-A141-01 02e56a7d-9169-4beb-9a82-b91122b466e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D11_777966.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OY TCGA-EW-A1OY-10A TCGA-EW-A1OY-10A-01D-A141-01 02e56a7d-9169-4beb-9a82-b91122b466e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D11_777966.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OY TCGA-EW-A1OY-10A TCGA-EW-A1OY-10A-01D-A141-01 02e56a7d-9169-4beb-9a82-b91122b466e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D11_777966.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OY TCGA-EW-A1OY-10A TCGA-EW-A1OY-10A-01D-A141-01 02e56a7d-9169-4beb-9a82-b91122b466e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D11_777966.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OY TCGA-EW-A1OY-10A TCGA-EW-A1OY-10A-01D-A141-01 02e56a7d-9169-4beb-9a82-b91122b466e3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D11_777966.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1OY TCGA-EW-A1OY-10A TCGA-EW-A1OY-10A-01D-A142-09 7ec0b0ae-6419-4745-abdb-bea4176cfd9f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OY TCGA-EW-A1OY-10A TCGA-EW-A1OY-10A-01W-A17W-09 4c0788ab-0e0c-4288-8e8f-9e090597bdc1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OY TCGA-EW-A1OY-10A TCGA-EW-A1OY-10A-01W-A187-09 0e403dba-b5e9-4232-a8ca-9fa9a26cae1a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OY.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OZ TCGA-EW-A1OZ-01A TCGA-EW-A1OZ-01A-11D-A140-02 0e19b1c1-d268-47c3-b8dd-3c718d7c64ab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OZ TCGA-EW-A1OZ-01A TCGA-EW-A1OZ-01A-11D-A141-01 d71a4ddd-13bd-4c7d-86c4-dd64b25450ac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OZ TCGA-EW-A1OZ-01A TCGA-EW-A1OZ-01A-11D-A141-01 d71a4ddd-13bd-4c7d-86c4-dd64b25450ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E03_777962.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1OZ TCGA-EW-A1OZ-01A TCGA-EW-A1OZ-01A-11D-A141-01 d71a4ddd-13bd-4c7d-86c4-dd64b25450ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E03_777962.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OZ TCGA-EW-A1OZ-01A TCGA-EW-A1OZ-01A-11D-A141-01 d71a4ddd-13bd-4c7d-86c4-dd64b25450ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E03_777962.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OZ TCGA-EW-A1OZ-01A TCGA-EW-A1OZ-01A-11D-A141-01 d71a4ddd-13bd-4c7d-86c4-dd64b25450ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E03_777962.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OZ TCGA-EW-A1OZ-01A TCGA-EW-A1OZ-01A-11D-A141-01 d71a4ddd-13bd-4c7d-86c4-dd64b25450ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E03_777962.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OZ TCGA-EW-A1OZ-01A TCGA-EW-A1OZ-01A-11D-A141-01 d71a4ddd-13bd-4c7d-86c4-dd64b25450ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E03_777962.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OZ TCGA-EW-A1OZ-01A TCGA-EW-A1OZ-01A-11D-A141-01 d71a4ddd-13bd-4c7d-86c4-dd64b25450ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E03_777962.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OZ TCGA-EW-A1OZ-01A TCGA-EW-A1OZ-01A-11D-A141-01 d71a4ddd-13bd-4c7d-86c4-dd64b25450ac SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E03_777962.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1OZ TCGA-EW-A1OZ-01A TCGA-EW-A1OZ-01A-11D-A142-09 a73152be-2293-403d-940b-74ac05810808 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OZ TCGA-EW-A1OZ-01A TCGA-EW-A1OZ-01A-11D-A145-05 83a04e7e-10d7-4cd6-9fff-f1ef5d88ec5b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OZ TCGA-EW-A1OZ-01A TCGA-EW-A1OZ-01A-11D-A145-05 83a04e7e-10d7-4cd6-9fff-f1ef5d88ec5b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818055_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1OZ TCGA-EW-A1OZ-01A TCGA-EW-A1OZ-01A-11D-A145-05 83a04e7e-10d7-4cd6-9fff-f1ef5d88ec5b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818055_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1OZ TCGA-EW-A1OZ-01A TCGA-EW-A1OZ-01A-11D-A145-05 83a04e7e-10d7-4cd6-9fff-f1ef5d88ec5b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-EW-A1OZ-01A-11D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-EW-A1OZ TCGA-EW-A1OZ-01A TCGA-EW-A1OZ-01A-11D-A145-05 83a04e7e-10d7-4cd6-9fff-f1ef5d88ec5b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-EW-A1OZ-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-EW-A1OZ TCGA-EW-A1OZ-01A TCGA-EW-A1OZ-01A-11R-A143-13 58484c97-54fc-40e6-b474-4d53f21a52e8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OZ TCGA-EW-A1OZ-01A TCGA-EW-A1OZ-01A-11R-A143-13 58484c97-54fc-40e6-b474-4d53f21a52e8 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1OZ-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1OZ TCGA-EW-A1OZ-01A TCGA-EW-A1OZ-01A-11R-A143-13 58484c97-54fc-40e6-b474-4d53f21a52e8 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1OZ-01A-11R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1OZ TCGA-EW-A1OZ-01A TCGA-EW-A1OZ-01A-11R-A144-07 73f6a579-eab4-4fbf-bb17-41f1a6614ace Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OZ TCGA-EW-A1OZ-01A TCGA-EW-A1OZ-01A-11R-A144-07 73f6a579-eab4-4fbf-bb17-41f1a6614ace RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_688801.TCGA-EW-A1OZ-01A-11R-A144-07.110801_UNC12-SN629_0115_BD0DVEABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1OZ TCGA-EW-A1OZ-01A TCGA-EW-A1OZ-01A-11R-A144-07 73f6a579-eab4-4fbf-bb17-41f1a6614ace RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_688804.TCGA-EW-A1OZ-01A-11R-A144-07.110801_UNC12-SN629_0115_BD0DVEABXX.6.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1OZ TCGA-EW-A1OZ-01A TCGA-EW-A1OZ-01A-11R-A144-07 73f6a579-eab4-4fbf-bb17-41f1a6614ace RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_688878.TCGA-EW-A1OZ-01A-11R-A144-07.110801_UNC12-SN629_0115_BD0DVEABXX.6.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1OZ TCGA-EW-A1OZ-01A TCGA-EW-A1OZ-01A-11W-A187-09 7f5f2f3c-2170-42ac-8720-c5d1759e87ac Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OZ TCGA-EW-A1OZ-10A TCGA-EW-A1OZ-10A-01D-A140-02 7cad16ab-c6a5-4b6d-8d89-be2179d34f2a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OZ TCGA-EW-A1OZ-10A TCGA-EW-A1OZ-10A-01D-A141-01 d538eca5-b240-4176-bfff-4605954c250d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OZ TCGA-EW-A1OZ-10A TCGA-EW-A1OZ-10A-01D-A141-01 d538eca5-b240-4176-bfff-4605954c250d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F09_778024.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1OZ TCGA-EW-A1OZ-10A TCGA-EW-A1OZ-10A-01D-A141-01 d538eca5-b240-4176-bfff-4605954c250d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F09_778024.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OZ TCGA-EW-A1OZ-10A TCGA-EW-A1OZ-10A-01D-A141-01 d538eca5-b240-4176-bfff-4605954c250d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F09_778024.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OZ TCGA-EW-A1OZ-10A TCGA-EW-A1OZ-10A-01D-A141-01 d538eca5-b240-4176-bfff-4605954c250d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F09_778024.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OZ TCGA-EW-A1OZ-10A TCGA-EW-A1OZ-10A-01D-A141-01 d538eca5-b240-4176-bfff-4605954c250d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F09_778024.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OZ TCGA-EW-A1OZ-10A TCGA-EW-A1OZ-10A-01D-A141-01 d538eca5-b240-4176-bfff-4605954c250d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F09_778024.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OZ TCGA-EW-A1OZ-10A TCGA-EW-A1OZ-10A-01D-A141-01 d538eca5-b240-4176-bfff-4605954c250d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F09_778024.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1OZ TCGA-EW-A1OZ-10A TCGA-EW-A1OZ-10A-01D-A141-01 d538eca5-b240-4176-bfff-4605954c250d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F09_778024.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1OZ TCGA-EW-A1OZ-10A TCGA-EW-A1OZ-10A-01D-A142-09 86f8904b-36e9-4dbf-9cd4-dafefc783b32 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1OZ TCGA-EW-A1OZ-10A TCGA-EW-A1OZ-10A-01W-A187-09 101489d0-369b-400c-a46e-296930212526 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1OZ.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P0 TCGA-EW-A1P0-01A TCGA-EW-A1P0-01A-11D-A140-02 f476d279-1941-42c2-97d0-209acf53fe35 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P0 TCGA-EW-A1P0-01A TCGA-EW-A1P0-01A-11D-A141-01 c5e3d0a9-e703-4c1c-92eb-3dcc093d14e2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P0 TCGA-EW-A1P0-01A TCGA-EW-A1P0-01A-11D-A141-01 c5e3d0a9-e703-4c1c-92eb-3dcc093d14e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E05_778034.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1P0 TCGA-EW-A1P0-01A TCGA-EW-A1P0-01A-11D-A141-01 c5e3d0a9-e703-4c1c-92eb-3dcc093d14e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E05_778034.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P0 TCGA-EW-A1P0-01A TCGA-EW-A1P0-01A-11D-A141-01 c5e3d0a9-e703-4c1c-92eb-3dcc093d14e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E05_778034.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P0 TCGA-EW-A1P0-01A TCGA-EW-A1P0-01A-11D-A141-01 c5e3d0a9-e703-4c1c-92eb-3dcc093d14e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E05_778034.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P0 TCGA-EW-A1P0-01A TCGA-EW-A1P0-01A-11D-A141-01 c5e3d0a9-e703-4c1c-92eb-3dcc093d14e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E05_778034.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P0 TCGA-EW-A1P0-01A TCGA-EW-A1P0-01A-11D-A141-01 c5e3d0a9-e703-4c1c-92eb-3dcc093d14e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E05_778034.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P0 TCGA-EW-A1P0-01A TCGA-EW-A1P0-01A-11D-A141-01 c5e3d0a9-e703-4c1c-92eb-3dcc093d14e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E05_778034.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P0 TCGA-EW-A1P0-01A TCGA-EW-A1P0-01A-11D-A141-01 c5e3d0a9-e703-4c1c-92eb-3dcc093d14e2 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E05_778034.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1P0 TCGA-EW-A1P0-01A TCGA-EW-A1P0-01A-11D-A142-09 6475f4dd-782c-411a-b7ce-9c9ebd0753b8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P0 TCGA-EW-A1P0-01A TCGA-EW-A1P0-01A-11D-A145-05 0718fb2f-692e-4d69-927a-73f40f89c5e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P0 TCGA-EW-A1P0-01A TCGA-EW-A1P0-01A-11D-A145-05 0718fb2f-692e-4d69-927a-73f40f89c5e4 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818055_R04C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1P0 TCGA-EW-A1P0-01A TCGA-EW-A1P0-01A-11D-A145-05 0718fb2f-692e-4d69-927a-73f40f89c5e4 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-EW-A1P0-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-EW-A1P0 TCGA-EW-A1P0-01A TCGA-EW-A1P0-01A-11R-A143-13 bd2b4eae-ccd0-4d33-9d63-cb314a6499e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P0 TCGA-EW-A1P0-01A TCGA-EW-A1P0-01A-11R-A143-13 bd2b4eae-ccd0-4d33-9d63-cb314a6499e4 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1P0-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1P0 TCGA-EW-A1P0-01A TCGA-EW-A1P0-01A-11R-A143-13 bd2b4eae-ccd0-4d33-9d63-cb314a6499e4 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1P0-01A-11R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1P0 TCGA-EW-A1P0-01A TCGA-EW-A1P0-01A-11R-A144-07 16fcbaec-f629-4d04-ab61-3f9b782e710d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P0 TCGA-EW-A1P0-01A TCGA-EW-A1P0-01A-11R-A144-07 16fcbaec-f629-4d04-ab61-3f9b782e710d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_482254.TCGA-EW-A1P0-01A-11R-A144-07.110810_UNC10-SN254_0263_AB09WEABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1P0 TCGA-EW-A1P0-01A TCGA-EW-A1P0-01A-11R-A144-07 16fcbaec-f629-4d04-ab61-3f9b782e710d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_482297.TCGA-EW-A1P0-01A-11R-A144-07.110810_UNC10-SN254_0263_AB09WEABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1P0 TCGA-EW-A1P0-01A TCGA-EW-A1P0-01A-11R-A144-07 16fcbaec-f629-4d04-ab61-3f9b782e710d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_482340.TCGA-EW-A1P0-01A-11R-A144-07.110810_UNC10-SN254_0263_AB09WEABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1P0 TCGA-EW-A1P0-01A TCGA-EW-A1P0-01A-11W-A187-09 655a20fd-6ab6-49ec-998c-a4c4c0b8b6ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P0 TCGA-EW-A1P0-10A TCGA-EW-A1P0-10A-01D-A140-02 52fb03fc-ab80-41b5-8f15-5497037fd94c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P0 TCGA-EW-A1P0-10A TCGA-EW-A1P0-10A-01D-A141-01 798b4f89-0649-4a76-9b2d-b9536d44883d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P0 TCGA-EW-A1P0-10A TCGA-EW-A1P0-10A-01D-A141-01 798b4f89-0649-4a76-9b2d-b9536d44883d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F11_778124.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1P0 TCGA-EW-A1P0-10A TCGA-EW-A1P0-10A-01D-A141-01 798b4f89-0649-4a76-9b2d-b9536d44883d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F11_778124.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P0 TCGA-EW-A1P0-10A TCGA-EW-A1P0-10A-01D-A141-01 798b4f89-0649-4a76-9b2d-b9536d44883d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F11_778124.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P0 TCGA-EW-A1P0-10A TCGA-EW-A1P0-10A-01D-A141-01 798b4f89-0649-4a76-9b2d-b9536d44883d SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F11_778124.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1P0 TCGA-EW-A1P0-10A TCGA-EW-A1P0-10A-01D-A142-09 b71deea6-58d2-42b0-89f6-8a195ffe6213 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P0 TCGA-EW-A1P0-10A TCGA-EW-A1P0-10A-01D-A17W-09 172f5b39-c67d-48a3-85b7-baf39d9ae4af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P0 TCGA-EW-A1P0-10A TCGA-EW-A1P0-10A-01W-A187-09 c3a743fd-ddf2-4db8-ad9c-a8e97a209261 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P0.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P1 TCGA-EW-A1P1-01A TCGA-EW-A1P1-01A-31D-A14E-02 744a879f-6733-445f-bff7-4d4e350cd077 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-EW-A1P1 TCGA-EW-A1P1-01A TCGA-EW-A1P1-01A-31D-A14F-01 cceccfe3-7764-4959-89ee-978af184c489 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-EW-A1P1 TCGA-EW-A1P1-01A TCGA-EW-A1P1-01A-31D-A14F-01 cceccfe3-7764-4959-89ee-978af184c489 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C04_777642.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0 120 07-DEC-11 11.18.53.710000000 AM TCGA-EW-A1P1 TCGA-EW-A1P1-01A TCGA-EW-A1P1-01A-31D-A14F-01 cceccfe3-7764-4959-89ee-978af184c489 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C04_777642.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-EW-A1P1 TCGA-EW-A1P1-01A TCGA-EW-A1P1-01A-31D-A14F-01 cceccfe3-7764-4959-89ee-978af184c489 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C04_777642.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-EW-A1P1 TCGA-EW-A1P1-01A TCGA-EW-A1P1-01A-31D-A14F-01 cceccfe3-7764-4959-89ee-978af184c489 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C04_777642.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-EW-A1P1 TCGA-EW-A1P1-01A TCGA-EW-A1P1-01A-31D-A14F-01 cceccfe3-7764-4959-89ee-978af184c489 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C04_777642.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.120.1008.0 120 07-DEC-11 11.53.17.059000000 AM TCGA-EW-A1P1 TCGA-EW-A1P1-01A TCGA-EW-A1P1-01A-31D-A14F-01 cceccfe3-7764-4959-89ee-978af184c489 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_C04_777642.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0 120 07-DEC-11 01.00.01.357000000 PM TCGA-EW-A1P1 TCGA-EW-A1P1-01A TCGA-EW-A1P1-01A-31D-A14G-09 28a56927-bab8-4a8c-be11-f46e37ea34c1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-EW-A1P1 TCGA-EW-A1P1-01A TCGA-EW-A1P1-01A-31D-A14H-05 ef6663e9-8a7b-4adb-a7c5-2e0169620890 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-EW-A1P1 TCGA-EW-A1P1-01A TCGA-EW-A1P1-01A-31D-A14H-05 ef6663e9-8a7b-4adb-a7c5-2e0169620890 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0/6057833057_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0 120 07-NOV-11 04.10.35.826000000 PM TCGA-EW-A1P1 TCGA-EW-A1P1-01A TCGA-EW-A1P1-01A-31D-A14H-05 ef6663e9-8a7b-4adb-a7c5-2e0169620890 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0/6057833057_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.11.1.0 120 07-NOV-11 04.10.35.826000000 PM TCGA-EW-A1P1 TCGA-EW-A1P1-01A TCGA-EW-A1P1-01A-31D-A14H-05 ef6663e9-8a7b-4adb-a7c5-2e0169620890 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-EW-A1P1 TCGA-EW-A1P1-01A TCGA-EW-A1P1-01A-31R-A14C-13 e7f25872-2ef5-4032-a617-0e5273f8edad miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1P1-01A-31R-A14C-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 120 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1P1 TCGA-EW-A1P1-01A TCGA-EW-A1P1-01A-31R-A14C-13 e7f25872-2ef5-4032-a617-0e5273f8edad miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-EW-A1P1 TCGA-EW-A1P1-10A TCGA-EW-A1P1-10A-01D-A14F-01 8d910890-daaf-48b6-b833-31794e2fd39f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A05_777674.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.120.1008.0 120 07-DEC-11 11.18.53.710000000 AM TCGA-EW-A1P1 TCGA-EW-A1P1-10A TCGA-EW-A1P1-10A-01D-A14F-01 8d910890-daaf-48b6-b833-31794e2fd39f SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0/CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A05_777674.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.120.1008.0 120 07-DEC-11 01.00.01.357000000 PM TCGA-EW-A1P1 TCGA-EW-A1P1-10A TCGA-EW-A1P1-10A-01D-A14G-09 81c42c7e-559d-4ce1-b046-64c9a1a5c3cc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-EW-A1P1 TCGA-EW-A1P1-10A TCGA-EW-A1P1-10A-01W-A16H-09 cbf7b424-1a0a-41d3-a204-f0bc7715940e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.120.11.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P1.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.120.11.0 120 05-JAN-12 09.37.50.791000000 PM TCGA-EW-A1P3 TCGA-EW-A1P3-01A TCGA-EW-A1P3-01A-11D-A140-02 021c11b1-88bc-49fe-95b2-557ec3daea46 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P3 TCGA-EW-A1P3-01A TCGA-EW-A1P3-01A-11D-A141-01 85ca025c-dd6b-413d-8994-e2d3e91d040f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P3 TCGA-EW-A1P3-01A TCGA-EW-A1P3-01A-11D-A141-01 85ca025c-dd6b-413d-8994-e2d3e91d040f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F12_777980.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1P3 TCGA-EW-A1P3-01A TCGA-EW-A1P3-01A-11D-A141-01 85ca025c-dd6b-413d-8994-e2d3e91d040f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F12_777980.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P3 TCGA-EW-A1P3-01A TCGA-EW-A1P3-01A-11D-A141-01 85ca025c-dd6b-413d-8994-e2d3e91d040f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F12_777980.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P3 TCGA-EW-A1P3-01A TCGA-EW-A1P3-01A-11D-A141-01 85ca025c-dd6b-413d-8994-e2d3e91d040f SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F12_777980.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1P3 TCGA-EW-A1P3-01A TCGA-EW-A1P3-01A-11D-A142-09 e783933d-1c24-4cd5-82b7-0d680f9c3c22 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P3 TCGA-EW-A1P3-01A TCGA-EW-A1P3-01A-11D-A145-05 8a25a3f0-6fe6-4e00-b319-a00a58b8b7a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P3 TCGA-EW-A1P3-01A TCGA-EW-A1P3-01A-11D-A145-05 8a25a3f0-6fe6-4e00-b319-a00a58b8b7a1 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818122_R06C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1P3 TCGA-EW-A1P3-01A TCGA-EW-A1P3-01A-11D-A145-05 8a25a3f0-6fe6-4e00-b319-a00a58b8b7a1 DNA Methylation HumanMethylation450 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-EW-A1P3-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-EW-A1P3 TCGA-EW-A1P3-01A TCGA-EW-A1P3-01A-11R-A143-13 bcdc6022-ce92-43f5-b4d4-49584814a4ee Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P3 TCGA-EW-A1P3-01A TCGA-EW-A1P3-01A-11R-A143-13 bcdc6022-ce92-43f5-b4d4-49584814a4ee miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1P3-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1P3 TCGA-EW-A1P3-01A TCGA-EW-A1P3-01A-11R-A143-13 bcdc6022-ce92-43f5-b4d4-49584814a4ee miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1P3-01A-11R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1P3 TCGA-EW-A1P3-01A TCGA-EW-A1P3-01A-11R-A144-07 43c8eaea-f686-4e28-ba9c-360fea61b3ca Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P3 TCGA-EW-A1P3-01A TCGA-EW-A1P3-01A-11R-A144-07 43c8eaea-f686-4e28-ba9c-360fea61b3ca RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_841445.TCGA-EW-A1P3-01A-11R-A144-07.111014_UNC10-SN254_0289_AC00VNABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1P3 TCGA-EW-A1P3-01A TCGA-EW-A1P3-01A-11R-A144-07 43c8eaea-f686-4e28-ba9c-360fea61b3ca RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_841448.TCGA-EW-A1P3-01A-11R-A144-07.111014_UNC10-SN254_0289_AC00VNABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1P3 TCGA-EW-A1P3-01A TCGA-EW-A1P3-01A-11R-A144-07 43c8eaea-f686-4e28-ba9c-360fea61b3ca RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_841511.TCGA-EW-A1P3-01A-11R-A144-07.111014_UNC10-SN254_0289_AC00VNABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1P3 TCGA-EW-A1P3-01A TCGA-EW-A1P3-01A-11W-A187-09 9bb57b44-2d08-4220-adf5-196d04b4cbfd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P3 TCGA-EW-A1P3-10A TCGA-EW-A1P3-10A-01D-A140-02 ca2de33c-7682-4287-b085-ad5e6a42208d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P3 TCGA-EW-A1P3-10A TCGA-EW-A1P3-10A-01D-A141-01 4ce10124-2ff1-43cf-a620-dafc3d522abd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P3 TCGA-EW-A1P3-10A TCGA-EW-A1P3-10A-01D-A141-01 4ce10124-2ff1-43cf-a620-dafc3d522abd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G01_778098.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1P3 TCGA-EW-A1P3-10A TCGA-EW-A1P3-10A-01D-A141-01 4ce10124-2ff1-43cf-a620-dafc3d522abd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G01_778098.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P3 TCGA-EW-A1P3-10A TCGA-EW-A1P3-10A-01D-A141-01 4ce10124-2ff1-43cf-a620-dafc3d522abd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G01_778098.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P3 TCGA-EW-A1P3-10A TCGA-EW-A1P3-10A-01D-A141-01 4ce10124-2ff1-43cf-a620-dafc3d522abd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G01_778098.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P3 TCGA-EW-A1P3-10A TCGA-EW-A1P3-10A-01D-A141-01 4ce10124-2ff1-43cf-a620-dafc3d522abd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G01_778098.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P3 TCGA-EW-A1P3-10A TCGA-EW-A1P3-10A-01D-A141-01 4ce10124-2ff1-43cf-a620-dafc3d522abd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G01_778098.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P3 TCGA-EW-A1P3-10A TCGA-EW-A1P3-10A-01D-A141-01 4ce10124-2ff1-43cf-a620-dafc3d522abd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G01_778098.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P3 TCGA-EW-A1P3-10A TCGA-EW-A1P3-10A-01D-A141-01 4ce10124-2ff1-43cf-a620-dafc3d522abd SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G01_778098.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1P3 TCGA-EW-A1P3-10A TCGA-EW-A1P3-10A-01D-A142-09 dafdbf8a-faaa-47a5-a9d3-9cabf520323e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P3 TCGA-EW-A1P3-10A TCGA-EW-A1P3-10A-01W-A187-09 454f4b4a-30b3-466e-a866-937a0a6c8f8a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P3.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P4 TCGA-EW-A1P4-01A TCGA-EW-A1P4-01A-21D-A140-02 ac037a05-8254-49de-9e1b-f22ca9c11229 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P4 TCGA-EW-A1P4-01A TCGA-EW-A1P4-01A-21D-A141-01 260e860c-9034-4c71-bc77-db7f25ae2baf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P4 TCGA-EW-A1P4-01A TCGA-EW-A1P4-01A-21D-A141-01 260e860c-9034-4c71-bc77-db7f25ae2baf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G03_777974.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1P4 TCGA-EW-A1P4-01A TCGA-EW-A1P4-01A-21D-A141-01 260e860c-9034-4c71-bc77-db7f25ae2baf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G03_777974.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P4 TCGA-EW-A1P4-01A TCGA-EW-A1P4-01A-21D-A141-01 260e860c-9034-4c71-bc77-db7f25ae2baf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G03_777974.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P4 TCGA-EW-A1P4-01A TCGA-EW-A1P4-01A-21D-A141-01 260e860c-9034-4c71-bc77-db7f25ae2baf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G03_777974.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P4 TCGA-EW-A1P4-01A TCGA-EW-A1P4-01A-21D-A141-01 260e860c-9034-4c71-bc77-db7f25ae2baf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G03_777974.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P4 TCGA-EW-A1P4-01A TCGA-EW-A1P4-01A-21D-A141-01 260e860c-9034-4c71-bc77-db7f25ae2baf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G03_777974.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P4 TCGA-EW-A1P4-01A TCGA-EW-A1P4-01A-21D-A141-01 260e860c-9034-4c71-bc77-db7f25ae2baf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G03_777974.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P4 TCGA-EW-A1P4-01A TCGA-EW-A1P4-01A-21D-A141-01 260e860c-9034-4c71-bc77-db7f25ae2baf SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G03_777974.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1P4 TCGA-EW-A1P4-01A TCGA-EW-A1P4-01A-21D-A142-09 204e4ef3-e6b8-469f-9024-56c6f6f07afd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P4 TCGA-EW-A1P4-01A TCGA-EW-A1P4-01A-21D-A145-05 cc88165a-edb2-4381-bf91-866429a887d5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P4 TCGA-EW-A1P4-01A TCGA-EW-A1P4-01A-21D-A145-05 cc88165a-edb2-4381-bf91-866429a887d5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818111_R03C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1P4 TCGA-EW-A1P4-01A TCGA-EW-A1P4-01A-21D-A145-05 cc88165a-edb2-4381-bf91-866429a887d5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818111_R03C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1P4 TCGA-EW-A1P4-01A TCGA-EW-A1P4-01A-21D-A145-05 cc88165a-edb2-4381-bf91-866429a887d5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-EW-A1P4-01A-21D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-EW-A1P4 TCGA-EW-A1P4-01A TCGA-EW-A1P4-01A-21D-A145-05 cc88165a-edb2-4381-bf91-866429a887d5 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-EW-A1P4-01A-21D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-EW-A1P4 TCGA-EW-A1P4-01A TCGA-EW-A1P4-01A-21R-A143-13 ab3a9fad-6695-404a-9339-6dbf7c582182 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P4 TCGA-EW-A1P4-01A TCGA-EW-A1P4-01A-21R-A143-13 ab3a9fad-6695-404a-9339-6dbf7c582182 miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P4 TCGA-EW-A1P4-10A TCGA-EW-A1P4-10A-01D-A140-02 8aec4f41-cf96-4aed-a5ce-086d401943d5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P4 TCGA-EW-A1P4-10A TCGA-EW-A1P4-10A-01D-A141-01 254cdeb9-738f-4410-9497-7f73be903ade Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P4 TCGA-EW-A1P4-10A TCGA-EW-A1P4-10A-01D-A141-01 254cdeb9-738f-4410-9497-7f73be903ade SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A11_778118.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1P4 TCGA-EW-A1P4-10A TCGA-EW-A1P4-10A-01D-A141-01 254cdeb9-738f-4410-9497-7f73be903ade SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A11_778118.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P4 TCGA-EW-A1P4-10A TCGA-EW-A1P4-10A-01D-A141-01 254cdeb9-738f-4410-9497-7f73be903ade SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A11_778118.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P4 TCGA-EW-A1P4-10A TCGA-EW-A1P4-10A-01D-A141-01 254cdeb9-738f-4410-9497-7f73be903ade SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A11_778118.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1P4 TCGA-EW-A1P4-10A TCGA-EW-A1P4-10A-01D-A142-09 99c296d2-1d17-47c0-b036-239170e2ff1a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P4.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P4 TCGA-EW-A1P4-10A TCGA-EW-A1P4-10A-01W-A187-09 d23d7e8a-f88b-44fd-beef-a3ca8fa2b032 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G06_778058.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P5 TCGA-EW-A1P5-01A TCGA-EW-A1P5-01A-11D-A141-01 9e80cde3-cb84-4a55-a77d-15eb2d799d10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G06_778058.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P5 TCGA-EW-A1P5-01A TCGA-EW-A1P5-01A-11D-A141-01 9e80cde3-cb84-4a55-a77d-15eb2d799d10 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G06_778058.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1P5 TCGA-EW-A1P5-01A TCGA-EW-A1P5-01A-11D-A142-09 84b4da42-9b73-4448-9185-a12857ab422f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P5 TCGA-EW-A1P5-01A TCGA-EW-A1P5-01A-11D-A145-05 b8640cde-07cb-4562-8230-902049bb73df Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P5 TCGA-EW-A1P5-01A TCGA-EW-A1P5-01A-11D-A145-05 b8640cde-07cb-4562-8230-902049bb73df DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818070_R02C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1P5 TCGA-EW-A1P5-01A TCGA-EW-A1P5-01A-11D-A145-05 b8640cde-07cb-4562-8230-902049bb73df DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818070_R02C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1P5 TCGA-EW-A1P5-01A TCGA-EW-A1P5-01A-11D-A145-05 b8640cde-07cb-4562-8230-902049bb73df DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-EW-A1P5-01A-11D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-EW-A1P5 TCGA-EW-A1P5-01A TCGA-EW-A1P5-01A-11D-A145-05 b8640cde-07cb-4562-8230-902049bb73df DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-EW-A1P5-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-EW-A1P5 TCGA-EW-A1P5-01A TCGA-EW-A1P5-01A-11R-A143-13 391cf443-6145-4d97-9801-dbc748c0e248 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P5 TCGA-EW-A1P5-01A TCGA-EW-A1P5-01A-11R-A143-13 391cf443-6145-4d97-9801-dbc748c0e248 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1P5-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1P5 TCGA-EW-A1P5-01A TCGA-EW-A1P5-01A-11R-A143-13 391cf443-6145-4d97-9801-dbc748c0e248 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1P5-01A-11R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1P5 TCGA-EW-A1P5-01A TCGA-EW-A1P5-01A-11R-A144-07 e9d4f9c8-7355-44c4-9b18-923db7bae832 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P5 TCGA-EW-A1P5-01A TCGA-EW-A1P5-01A-11R-A144-07 e9d4f9c8-7355-44c4-9b18-923db7bae832 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_688752.TCGA-EW-A1P5-01A-11R-A144-07.110801_UNC12-SN629_0115_BD0DVEABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1P5 TCGA-EW-A1P5-01A TCGA-EW-A1P5-01A-11R-A144-07 e9d4f9c8-7355-44c4-9b18-923db7bae832 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_688777.TCGA-EW-A1P5-01A-11R-A144-07.110801_UNC12-SN629_0115_BD0DVEABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1P5 TCGA-EW-A1P5-01A TCGA-EW-A1P5-01A-11R-A144-07 e9d4f9c8-7355-44c4-9b18-923db7bae832 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_688875.TCGA-EW-A1P5-01A-11R-A144-07.110801_UNC12-SN629_0115_BD0DVEABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1P5 TCGA-EW-A1P5-01A TCGA-EW-A1P5-01A-11W-A187-09 8732adc5-3dc8-4d21-9279-2a9aaf3a9441 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P5 TCGA-EW-A1P5-10A TCGA-EW-A1P5-10A-01D-A140-02 c2810188-55c4-4a2a-87c6-574509919dd6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P5 TCGA-EW-A1P5-10A TCGA-EW-A1P5-10A-01D-A141-01 db6ef0e0-aae9-4652-8877-cd8ac91b48ae Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P5 TCGA-EW-A1P5-10A TCGA-EW-A1P5-10A-01D-A141-01 db6ef0e0-aae9-4652-8877-cd8ac91b48ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C12_778064.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1P5 TCGA-EW-A1P5-10A TCGA-EW-A1P5-10A-01D-A141-01 db6ef0e0-aae9-4652-8877-cd8ac91b48ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C12_778064.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P5 TCGA-EW-A1P5-10A TCGA-EW-A1P5-10A-01D-A141-01 db6ef0e0-aae9-4652-8877-cd8ac91b48ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C12_778064.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P5 TCGA-EW-A1P5-10A TCGA-EW-A1P5-10A-01D-A141-01 db6ef0e0-aae9-4652-8877-cd8ac91b48ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C12_778064.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P5 TCGA-EW-A1P5-10A TCGA-EW-A1P5-10A-01D-A141-01 db6ef0e0-aae9-4652-8877-cd8ac91b48ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C12_778064.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P5 TCGA-EW-A1P5-10A TCGA-EW-A1P5-10A-01D-A141-01 db6ef0e0-aae9-4652-8877-cd8ac91b48ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C12_778064.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P5 TCGA-EW-A1P5-10A TCGA-EW-A1P5-10A-01D-A141-01 db6ef0e0-aae9-4652-8877-cd8ac91b48ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C12_778064.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P5 TCGA-EW-A1P5-10A TCGA-EW-A1P5-10A-01D-A141-01 db6ef0e0-aae9-4652-8877-cd8ac91b48ae SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C12_778064.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1P5 TCGA-EW-A1P5-10A TCGA-EW-A1P5-10A-01D-A142-09 a25a1ed5-8ba9-44fb-957f-3f928f2c0e28 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P5 TCGA-EW-A1P5-10A TCGA-EW-A1P5-10A-01W-A187-09 4ba102c4-897a-4fe2-aaa6-5ab87bb0df6f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P5.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P6 TCGA-EW-A1P6-01A TCGA-EW-A1P6-01A-11D-A140-02 9197f4b4-c23a-463c-aeaf-a5b88221ee40 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P6 TCGA-EW-A1P6-01A TCGA-EW-A1P6-01A-11D-A141-01 b6a2cace-5fb3-440b-8647-08548b388755 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P6 TCGA-EW-A1P6-01A TCGA-EW-A1P6-01A-11D-A141-01 b6a2cace-5fb3-440b-8647-08548b388755 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D03_777964.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1P6 TCGA-EW-A1P6-01A TCGA-EW-A1P6-01A-11D-A141-01 b6a2cace-5fb3-440b-8647-08548b388755 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D03_777964.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P6 TCGA-EW-A1P6-01A TCGA-EW-A1P6-01A-11D-A141-01 b6a2cace-5fb3-440b-8647-08548b388755 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D03_777964.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P6 TCGA-EW-A1P6-01A TCGA-EW-A1P6-01A-11D-A141-01 b6a2cace-5fb3-440b-8647-08548b388755 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D03_777964.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P6 TCGA-EW-A1P6-01A TCGA-EW-A1P6-01A-11D-A141-01 b6a2cace-5fb3-440b-8647-08548b388755 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D03_777964.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P6 TCGA-EW-A1P6-01A TCGA-EW-A1P6-01A-11D-A141-01 b6a2cace-5fb3-440b-8647-08548b388755 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D03_777964.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P6 TCGA-EW-A1P6-01A TCGA-EW-A1P6-01A-11D-A141-01 b6a2cace-5fb3-440b-8647-08548b388755 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D03_777964.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P6 TCGA-EW-A1P6-01A TCGA-EW-A1P6-01A-11D-A141-01 b6a2cace-5fb3-440b-8647-08548b388755 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D03_777964.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1P6 TCGA-EW-A1P6-01A TCGA-EW-A1P6-01A-11D-A142-09 eef5cea9-82f6-4001-8e2c-701e43a9787a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P6 TCGA-EW-A1P6-01A TCGA-EW-A1P6-01A-11D-A145-05 66b87aa6-ed90-4849-a4e3-84eca737be6e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P6 TCGA-EW-A1P6-01A TCGA-EW-A1P6-01A-11D-A145-05 66b87aa6-ed90-4849-a4e3-84eca737be6e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818122_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1P6 TCGA-EW-A1P6-01A TCGA-EW-A1P6-01A-11D-A145-05 66b87aa6-ed90-4849-a4e3-84eca737be6e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818122_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1P6 TCGA-EW-A1P6-01A TCGA-EW-A1P6-01A-11D-A145-05 66b87aa6-ed90-4849-a4e3-84eca737be6e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-EW-A1P6-01A-11D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-EW-A1P6 TCGA-EW-A1P6-01A TCGA-EW-A1P6-01A-11D-A145-05 66b87aa6-ed90-4849-a4e3-84eca737be6e DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-EW-A1P6-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-EW-A1P6 TCGA-EW-A1P6-01A TCGA-EW-A1P6-01A-11R-A143-13 de4b8a2b-4a5e-4a66-b71e-db13d7845e54 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P6 TCGA-EW-A1P6-01A TCGA-EW-A1P6-01A-11R-A143-13 de4b8a2b-4a5e-4a66-b71e-db13d7845e54 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1P6-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1P6 TCGA-EW-A1P6-01A TCGA-EW-A1P6-01A-11R-A143-13 de4b8a2b-4a5e-4a66-b71e-db13d7845e54 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1P6-01A-11R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1P6 TCGA-EW-A1P6-01A TCGA-EW-A1P6-01A-11R-A144-07 9dddaf60-64ed-4d41-a546-79e86db1101e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P6 TCGA-EW-A1P6-01A TCGA-EW-A1P6-01A-11R-A144-07 9dddaf60-64ed-4d41-a546-79e86db1101e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_841398.TCGA-EW-A1P6-01A-11R-A144-07.111014_UNC10-SN254_0289_AC00VNABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1P6 TCGA-EW-A1P6-01A TCGA-EW-A1P6-01A-11R-A144-07 9dddaf60-64ed-4d41-a546-79e86db1101e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_841454.TCGA-EW-A1P6-01A-11R-A144-07.111014_UNC10-SN254_0289_AC00VNABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1P6 TCGA-EW-A1P6-01A TCGA-EW-A1P6-01A-11R-A144-07 9dddaf60-64ed-4d41-a546-79e86db1101e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_841529.TCGA-EW-A1P6-01A-11R-A144-07.111014_UNC10-SN254_0289_AC00VNABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1P6 TCGA-EW-A1P6-01A TCGA-EW-A1P6-01A-11W-A187-09 fbdba410-839d-4c69-9c4d-bc501959d224 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P6 TCGA-EW-A1P6-10A TCGA-EW-A1P6-10A-01D-A140-02 433e4a0b-cc67-40ad-b5e9-ef6a15c7669f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P6 TCGA-EW-A1P6-10A TCGA-EW-A1P6-10A-01D-A141-01 cbf734bd-3002-499a-ab2f-790842c9795f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P6 TCGA-EW-A1P6-10A TCGA-EW-A1P6-10A-01D-A141-01 cbf734bd-3002-499a-ab2f-790842c9795f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B03_778006.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1P6 TCGA-EW-A1P6-10A TCGA-EW-A1P6-10A-01D-A141-01 cbf734bd-3002-499a-ab2f-790842c9795f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B03_778006.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P6 TCGA-EW-A1P6-10A TCGA-EW-A1P6-10A-01D-A141-01 cbf734bd-3002-499a-ab2f-790842c9795f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B03_778006.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P6 TCGA-EW-A1P6-10A TCGA-EW-A1P6-10A-01D-A141-01 cbf734bd-3002-499a-ab2f-790842c9795f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B03_778006.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P6 TCGA-EW-A1P6-10A TCGA-EW-A1P6-10A-01D-A141-01 cbf734bd-3002-499a-ab2f-790842c9795f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B03_778006.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P6 TCGA-EW-A1P6-10A TCGA-EW-A1P6-10A-01D-A141-01 cbf734bd-3002-499a-ab2f-790842c9795f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B03_778006.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P6 TCGA-EW-A1P6-10A TCGA-EW-A1P6-10A-01D-A141-01 cbf734bd-3002-499a-ab2f-790842c9795f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B03_778006.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P6 TCGA-EW-A1P6-10A TCGA-EW-A1P6-10A-01D-A141-01 cbf734bd-3002-499a-ab2f-790842c9795f SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B03_778006.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1P6 TCGA-EW-A1P6-10A TCGA-EW-A1P6-10A-01D-A142-09 9363f17c-f3ba-4219-8de9-15f0cf99dcd2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P6 TCGA-EW-A1P6-10A TCGA-EW-A1P6-10A-01W-A187-09 d10c6479-a26e-42cc-bea1-066c46fb4c82 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P6.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P7 TCGA-EW-A1P7-01A TCGA-EW-A1P7-01A-21D-A140-02 9a0b3015-b420-42a2-81dd-8ae8801e67e4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P7 TCGA-EW-A1P7-01A TCGA-EW-A1P7-01A-21D-A141-01 f179bb91-8b60-4eaf-aea1-5161b0c96719 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P7 TCGA-EW-A1P7-01A TCGA-EW-A1P7-01A-21D-A141-01 f179bb91-8b60-4eaf-aea1-5161b0c96719 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G11_778054.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1P7 TCGA-EW-A1P7-01A TCGA-EW-A1P7-01A-21D-A141-01 f179bb91-8b60-4eaf-aea1-5161b0c96719 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G11_778054.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P7 TCGA-EW-A1P7-01A TCGA-EW-A1P7-01A-21D-A141-01 f179bb91-8b60-4eaf-aea1-5161b0c96719 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G11_778054.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P7 TCGA-EW-A1P7-01A TCGA-EW-A1P7-01A-21D-A141-01 f179bb91-8b60-4eaf-aea1-5161b0c96719 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G11_778054.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P7 TCGA-EW-A1P7-01A TCGA-EW-A1P7-01A-21D-A141-01 f179bb91-8b60-4eaf-aea1-5161b0c96719 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G11_778054.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P7 TCGA-EW-A1P7-01A TCGA-EW-A1P7-01A-21D-A141-01 f179bb91-8b60-4eaf-aea1-5161b0c96719 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G11_778054.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P7 TCGA-EW-A1P7-01A TCGA-EW-A1P7-01A-21D-A141-01 f179bb91-8b60-4eaf-aea1-5161b0c96719 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G11_778054.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P7 TCGA-EW-A1P7-01A TCGA-EW-A1P7-01A-21D-A141-01 f179bb91-8b60-4eaf-aea1-5161b0c96719 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G11_778054.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1P7 TCGA-EW-A1P7-01A TCGA-EW-A1P7-01A-21D-A142-09 402abf40-5a01-467d-a5be-b9101743f34b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P7 TCGA-EW-A1P7-01A TCGA-EW-A1P7-01A-21D-A145-05 e3bc1c41-8cff-45cd-a9f6-907f3e25c676 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P7 TCGA-EW-A1P7-01A TCGA-EW-A1P7-01A-21D-A145-05 e3bc1c41-8cff-45cd-a9f6-907f3e25c676 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818102_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1P7 TCGA-EW-A1P7-01A TCGA-EW-A1P7-01A-21D-A145-05 e3bc1c41-8cff-45cd-a9f6-907f3e25c676 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818102_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1P7 TCGA-EW-A1P7-01A TCGA-EW-A1P7-01A-21D-A145-05 e3bc1c41-8cff-45cd-a9f6-907f3e25c676 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-EW-A1P7-01A-21D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-EW-A1P7 TCGA-EW-A1P7-01A TCGA-EW-A1P7-01A-21D-A145-05 e3bc1c41-8cff-45cd-a9f6-907f3e25c676 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-EW-A1P7-01A-21D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-EW-A1P7 TCGA-EW-A1P7-01A TCGA-EW-A1P7-01A-21R-A143-13 afe43cd9-fc5e-4f9d-87aa-e6f08dfac898 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P7 TCGA-EW-A1P7-01A TCGA-EW-A1P7-01A-21R-A143-13 afe43cd9-fc5e-4f9d-87aa-e6f08dfac898 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1P7-01A-21R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1P7 TCGA-EW-A1P7-01A TCGA-EW-A1P7-01A-21R-A143-13 afe43cd9-fc5e-4f9d-87aa-e6f08dfac898 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1P7-01A-21R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1P7 TCGA-EW-A1P7-01A TCGA-EW-A1P7-01A-21R-A144-07 e11a1fd3-d409-4e09-a8ab-5d0afb455263 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P7 TCGA-EW-A1P7-01A TCGA-EW-A1P7-01A-21R-A144-07 e11a1fd3-d409-4e09-a8ab-5d0afb455263 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_456238.TCGA-EW-A1P7-01A-21R-A144-07.110829_UNC10-SN254_0272_BB07RMABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1P7 TCGA-EW-A1P7-01A TCGA-EW-A1P7-01A-21R-A144-07 e11a1fd3-d409-4e09-a8ab-5d0afb455263 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_456253.TCGA-EW-A1P7-01A-21R-A144-07.110829_UNC10-SN254_0272_BB07RMABXX.1.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1P7 TCGA-EW-A1P7-01A TCGA-EW-A1P7-01A-21R-A144-07 e11a1fd3-d409-4e09-a8ab-5d0afb455263 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_456370.TCGA-EW-A1P7-01A-21R-A144-07.110829_UNC10-SN254_0272_BB07RMABXX.1.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1P7 TCGA-EW-A1P7-01A TCGA-EW-A1P7-01A-21W-A187-09 e3c7ff05-a21c-490d-9498-d3320f4b40bd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P7 TCGA-EW-A1P7-10A TCGA-EW-A1P7-10A-01D-A140-02 f131f235-e100-4c55-87bd-f849fe54393c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P7 TCGA-EW-A1P7-10A TCGA-EW-A1P7-10A-01D-A141-01 1f669b79-1b7c-4153-9fbe-c27b15e2519b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P7 TCGA-EW-A1P7-10A TCGA-EW-A1P7-10A-01D-A141-01 1f669b79-1b7c-4153-9fbe-c27b15e2519b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G12_778082.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1P7 TCGA-EW-A1P7-10A TCGA-EW-A1P7-10A-01D-A141-01 1f669b79-1b7c-4153-9fbe-c27b15e2519b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G12_778082.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P7 TCGA-EW-A1P7-10A TCGA-EW-A1P7-10A-01D-A141-01 1f669b79-1b7c-4153-9fbe-c27b15e2519b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G12_778082.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P7 TCGA-EW-A1P7-10A TCGA-EW-A1P7-10A-01D-A141-01 1f669b79-1b7c-4153-9fbe-c27b15e2519b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G12_778082.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P7 TCGA-EW-A1P7-10A TCGA-EW-A1P7-10A-01D-A141-01 1f669b79-1b7c-4153-9fbe-c27b15e2519b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G12_778082.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P7 TCGA-EW-A1P7-10A TCGA-EW-A1P7-10A-01D-A141-01 1f669b79-1b7c-4153-9fbe-c27b15e2519b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G12_778082.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P7 TCGA-EW-A1P7-10A TCGA-EW-A1P7-10A-01D-A141-01 1f669b79-1b7c-4153-9fbe-c27b15e2519b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G12_778082.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P7 TCGA-EW-A1P7-10A TCGA-EW-A1P7-10A-01D-A141-01 1f669b79-1b7c-4153-9fbe-c27b15e2519b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G12_778082.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1P7 TCGA-EW-A1P7-10A TCGA-EW-A1P7-10A-01D-A142-09 4b8b9e5a-517f-4c80-862a-032f78617cce Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P7 TCGA-EW-A1P7-10A TCGA-EW-A1P7-10A-01W-A187-09 de6feaf3-d73a-49dc-9ceb-8116a4d399dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P7.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P8 TCGA-EW-A1P8-01A TCGA-EW-A1P8-01A-11D-A140-02 4b8435d8-1270-48a4-9c5c-2a12fc557dfc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P8 TCGA-EW-A1P8-01A TCGA-EW-A1P8-01A-11D-A141-01 1dce5c12-1c51-4544-b148-7d313826a491 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P8 TCGA-EW-A1P8-01A TCGA-EW-A1P8-01A-11D-A141-01 1dce5c12-1c51-4544-b148-7d313826a491 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F05_777982.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1P8 TCGA-EW-A1P8-01A TCGA-EW-A1P8-01A-11D-A141-01 1dce5c12-1c51-4544-b148-7d313826a491 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F05_777982.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P8 TCGA-EW-A1P8-01A TCGA-EW-A1P8-01A-11D-A141-01 1dce5c12-1c51-4544-b148-7d313826a491 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F05_777982.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P8 TCGA-EW-A1P8-01A TCGA-EW-A1P8-01A-11D-A141-01 1dce5c12-1c51-4544-b148-7d313826a491 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F05_777982.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P8 TCGA-EW-A1P8-01A TCGA-EW-A1P8-01A-11D-A141-01 1dce5c12-1c51-4544-b148-7d313826a491 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F05_777982.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P8 TCGA-EW-A1P8-01A TCGA-EW-A1P8-01A-11D-A141-01 1dce5c12-1c51-4544-b148-7d313826a491 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F05_777982.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P8 TCGA-EW-A1P8-01A TCGA-EW-A1P8-01A-11D-A141-01 1dce5c12-1c51-4544-b148-7d313826a491 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F05_777982.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P8 TCGA-EW-A1P8-01A TCGA-EW-A1P8-01A-11D-A141-01 1dce5c12-1c51-4544-b148-7d313826a491 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F05_777982.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1P8 TCGA-EW-A1P8-01A TCGA-EW-A1P8-01A-11D-A142-09 e55f338f-97e2-4394-ae23-c92606069485 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P8 TCGA-EW-A1P8-01A TCGA-EW-A1P8-01A-11D-A145-05 d269ac3b-1c3a-4a82-a676-b77dc7662139 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P8 TCGA-EW-A1P8-01A TCGA-EW-A1P8-01A-11D-A145-05 d269ac3b-1c3a-4a82-a676-b77dc7662139 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818111_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1P8 TCGA-EW-A1P8-01A TCGA-EW-A1P8-01A-11D-A145-05 d269ac3b-1c3a-4a82-a676-b77dc7662139 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818111_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1P8 TCGA-EW-A1P8-01A TCGA-EW-A1P8-01A-11D-A145-05 d269ac3b-1c3a-4a82-a676-b77dc7662139 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-EW-A1P8-01A-11D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-EW-A1P8 TCGA-EW-A1P8-01A TCGA-EW-A1P8-01A-11D-A145-05 d269ac3b-1c3a-4a82-a676-b77dc7662139 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-EW-A1P8-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-EW-A1P8 TCGA-EW-A1P8-01A TCGA-EW-A1P8-01A-11R-A143-13 e79d799b-943b-4712-9267-3857919d5b68 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P8 TCGA-EW-A1P8-01A TCGA-EW-A1P8-01A-11R-A143-13 e79d799b-943b-4712-9267-3857919d5b68 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1P8-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1P8 TCGA-EW-A1P8-01A TCGA-EW-A1P8-01A-11R-A143-13 e79d799b-943b-4712-9267-3857919d5b68 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1P8-01A-11R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1P8 TCGA-EW-A1P8-01A TCGA-EW-A1P8-01A-11R-A144-07 d763ccd4-4a11-4e84-b0a6-1b42da020ce4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P8 TCGA-EW-A1P8-01A TCGA-EW-A1P8-01A-11R-A144-07 d763ccd4-4a11-4e84-b0a6-1b42da020ce4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_601158.TCGA-EW-A1P8-01A-11R-A144-07.111014_UNC10-SN254_0289_AC00VNABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1P8 TCGA-EW-A1P8-01A TCGA-EW-A1P8-01A-11R-A144-07 d763ccd4-4a11-4e84-b0a6-1b42da020ce4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_601399.TCGA-EW-A1P8-01A-11R-A144-07.111014_UNC10-SN254_0289_AC00VNABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1P8 TCGA-EW-A1P8-01A TCGA-EW-A1P8-01A-11R-A144-07 d763ccd4-4a11-4e84-b0a6-1b42da020ce4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_601409.TCGA-EW-A1P8-01A-11R-A144-07.111014_UNC10-SN254_0289_AC00VNABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1P8 TCGA-EW-A1P8-01A TCGA-EW-A1P8-01A-11W-A187-09 4fd3d167-c41e-4069-a5f3-56e3659bcd19 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P8 TCGA-EW-A1P8-10A TCGA-EW-A1P8-10A-01D-A140-02 d1ff1b1d-9aea-4bd1-b567-70a935b29fcb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P8 TCGA-EW-A1P8-10A TCGA-EW-A1P8-10A-01D-A141-01 a8c61ce4-9f42-4983-8577-341e22cbb3ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P8 TCGA-EW-A1P8-10A TCGA-EW-A1P8-10A-01D-A141-01 a8c61ce4-9f42-4983-8577-341e22cbb3ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B08_777998.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1P8 TCGA-EW-A1P8-10A TCGA-EW-A1P8-10A-01D-A141-01 a8c61ce4-9f42-4983-8577-341e22cbb3ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B08_777998.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P8 TCGA-EW-A1P8-10A TCGA-EW-A1P8-10A-01D-A141-01 a8c61ce4-9f42-4983-8577-341e22cbb3ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B08_777998.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P8 TCGA-EW-A1P8-10A TCGA-EW-A1P8-10A-01D-A141-01 a8c61ce4-9f42-4983-8577-341e22cbb3ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B08_777998.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P8 TCGA-EW-A1P8-10A TCGA-EW-A1P8-10A-01D-A141-01 a8c61ce4-9f42-4983-8577-341e22cbb3ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B08_777998.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P8 TCGA-EW-A1P8-10A TCGA-EW-A1P8-10A-01D-A141-01 a8c61ce4-9f42-4983-8577-341e22cbb3ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B08_777998.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P8 TCGA-EW-A1P8-10A TCGA-EW-A1P8-10A-01D-A141-01 a8c61ce4-9f42-4983-8577-341e22cbb3ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B08_777998.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1P8 TCGA-EW-A1P8-10A TCGA-EW-A1P8-10A-01D-A141-01 a8c61ce4-9f42-4983-8577-341e22cbb3ed SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B08_777998.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1P8 TCGA-EW-A1P8-10A TCGA-EW-A1P8-10A-01D-A142-09 45c5228f-0317-4c73-a84a-257abfbb5ae8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1P8 TCGA-EW-A1P8-10A TCGA-EW-A1P8-10A-01W-A187-09 1f496a2d-6407-4328-b3a6-7dafb3b6c2ba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1P8.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PA TCGA-EW-A1PA-01A TCGA-EW-A1PA-01A-11D-A140-02 98b5ccf5-e0b6-4058-ab1d-12ba007071cb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PA TCGA-EW-A1PA-01A TCGA-EW-A1PA-01A-11D-A141-01 80450b0c-0c95-4b4a-9575-4d5a07de3821 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PA TCGA-EW-A1PA-01A TCGA-EW-A1PA-01A-11D-A141-01 80450b0c-0c95-4b4a-9575-4d5a07de3821 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C03_778068.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1PA TCGA-EW-A1PA-01A TCGA-EW-A1PA-01A-11D-A141-01 80450b0c-0c95-4b4a-9575-4d5a07de3821 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C03_778068.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PA TCGA-EW-A1PA-01A TCGA-EW-A1PA-01A-11D-A141-01 80450b0c-0c95-4b4a-9575-4d5a07de3821 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C03_778068.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PA TCGA-EW-A1PA-01A TCGA-EW-A1PA-01A-11D-A141-01 80450b0c-0c95-4b4a-9575-4d5a07de3821 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C03_778068.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PA TCGA-EW-A1PA-01A TCGA-EW-A1PA-01A-11D-A141-01 80450b0c-0c95-4b4a-9575-4d5a07de3821 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C03_778068.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PA TCGA-EW-A1PA-01A TCGA-EW-A1PA-01A-11D-A141-01 80450b0c-0c95-4b4a-9575-4d5a07de3821 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C03_778068.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PA TCGA-EW-A1PA-01A TCGA-EW-A1PA-01A-11D-A141-01 80450b0c-0c95-4b4a-9575-4d5a07de3821 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C03_778068.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PA TCGA-EW-A1PA-01A TCGA-EW-A1PA-01A-11D-A141-01 80450b0c-0c95-4b4a-9575-4d5a07de3821 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C03_778068.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1PA TCGA-EW-A1PA-01A TCGA-EW-A1PA-01A-11D-A142-09 56c8aca4-b3bd-4791-b05d-0b2338b6346d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PA TCGA-EW-A1PA-01A TCGA-EW-A1PA-01A-11D-A145-05 27fbbb97-5cf0-4067-8eef-6a86a5546f8d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PA TCGA-EW-A1PA-01A TCGA-EW-A1PA-01A-11D-A145-05 27fbbb97-5cf0-4067-8eef-6a86a5546f8d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818102_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1PA TCGA-EW-A1PA-01A TCGA-EW-A1PA-01A-11D-A145-05 27fbbb97-5cf0-4067-8eef-6a86a5546f8d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818102_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1PA TCGA-EW-A1PA-01A TCGA-EW-A1PA-01A-11D-A145-05 27fbbb97-5cf0-4067-8eef-6a86a5546f8d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-EW-A1PA-01A-11D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-EW-A1PA TCGA-EW-A1PA-01A TCGA-EW-A1PA-01A-11D-A145-05 27fbbb97-5cf0-4067-8eef-6a86a5546f8d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-EW-A1PA-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-EW-A1PA TCGA-EW-A1PA-01A TCGA-EW-A1PA-01A-11R-A143-13 7bc2d9c0-3cf8-42f2-8231-cbf5e14ecb6f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PA TCGA-EW-A1PA-01A TCGA-EW-A1PA-01A-11R-A144-07 8c0b7027-f371-4a72-9152-2d00fc54e086 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PA TCGA-EW-A1PA-01A TCGA-EW-A1PA-01A-11R-A144-07 8c0b7027-f371-4a72-9152-2d00fc54e086 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_841596.TCGA-EW-A1PA-01A-11R-A144-07.111014_UNC10-SN254_0289_AC00VNABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1PA TCGA-EW-A1PA-01A TCGA-EW-A1PA-01A-11R-A144-07 8c0b7027-f371-4a72-9152-2d00fc54e086 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_841608.TCGA-EW-A1PA-01A-11R-A144-07.111014_UNC10-SN254_0289_AC00VNABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1PA TCGA-EW-A1PA-01A TCGA-EW-A1PA-01A-11R-A144-07 8c0b7027-f371-4a72-9152-2d00fc54e086 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_841726.TCGA-EW-A1PA-01A-11R-A144-07.111014_UNC10-SN254_0289_AC00VNABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1PA TCGA-EW-A1PA-01A TCGA-EW-A1PA-01A-11W-A187-09 c0c026a3-a061-444f-aae4-bfc8e514ae70 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PA TCGA-EW-A1PA-10A TCGA-EW-A1PA-10A-01D-A140-02 3bbbe5a1-21e7-4c88-a502-5dd478823fb9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PA TCGA-EW-A1PA-10A TCGA-EW-A1PA-10A-01D-A141-01 b40c16c9-43e9-4c9d-9225-5ff2e4c72da1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PA TCGA-EW-A1PA-10A TCGA-EW-A1PA-10A-01D-A141-01 b40c16c9-43e9-4c9d-9225-5ff2e4c72da1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A03_778076.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1PA TCGA-EW-A1PA-10A TCGA-EW-A1PA-10A-01D-A141-01 b40c16c9-43e9-4c9d-9225-5ff2e4c72da1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A03_778076.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PA TCGA-EW-A1PA-10A TCGA-EW-A1PA-10A-01D-A141-01 b40c16c9-43e9-4c9d-9225-5ff2e4c72da1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A03_778076.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PA TCGA-EW-A1PA-10A TCGA-EW-A1PA-10A-01D-A141-01 b40c16c9-43e9-4c9d-9225-5ff2e4c72da1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A03_778076.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PA TCGA-EW-A1PA-10A TCGA-EW-A1PA-10A-01D-A141-01 b40c16c9-43e9-4c9d-9225-5ff2e4c72da1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A03_778076.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PA TCGA-EW-A1PA-10A TCGA-EW-A1PA-10A-01D-A141-01 b40c16c9-43e9-4c9d-9225-5ff2e4c72da1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A03_778076.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PA TCGA-EW-A1PA-10A TCGA-EW-A1PA-10A-01D-A141-01 b40c16c9-43e9-4c9d-9225-5ff2e4c72da1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A03_778076.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PA TCGA-EW-A1PA-10A TCGA-EW-A1PA-10A-01D-A141-01 b40c16c9-43e9-4c9d-9225-5ff2e4c72da1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A03_778076.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1PA TCGA-EW-A1PA-10A TCGA-EW-A1PA-10A-01D-A142-09 278dc7a3-0378-4bdc-98b7-436bf0a2ab6e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PA TCGA-EW-A1PA-10A TCGA-EW-A1PA-10A-01W-A187-09 c3431a66-dbcc-4ab5-a2f9-e0ad83bc9dc3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PA.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PB TCGA-EW-A1PB-01A TCGA-EW-A1PB-01A-11D-A140-02 7de1ee56-a2a6-4c45-8fea-bae2ea315097 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PB TCGA-EW-A1PB-01A TCGA-EW-A1PB-01A-11D-A141-01 e50f848e-a469-41c1-b44b-4dbc283fd0a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PB TCGA-EW-A1PB-01A TCGA-EW-A1PB-01A-11D-A141-01 e50f848e-a469-41c1-b44b-4dbc283fd0a6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E06_778014.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1PB TCGA-EW-A1PB-01A TCGA-EW-A1PB-01A-11D-A141-01 e50f848e-a469-41c1-b44b-4dbc283fd0a6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E06_778014.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PB TCGA-EW-A1PB-01A TCGA-EW-A1PB-01A-11D-A141-01 e50f848e-a469-41c1-b44b-4dbc283fd0a6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E06_778014.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PB TCGA-EW-A1PB-01A TCGA-EW-A1PB-01A-11D-A141-01 e50f848e-a469-41c1-b44b-4dbc283fd0a6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E06_778014.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PB TCGA-EW-A1PB-01A TCGA-EW-A1PB-01A-11D-A141-01 e50f848e-a469-41c1-b44b-4dbc283fd0a6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E06_778014.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PB TCGA-EW-A1PB-01A TCGA-EW-A1PB-01A-11D-A141-01 e50f848e-a469-41c1-b44b-4dbc283fd0a6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E06_778014.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PB TCGA-EW-A1PB-01A TCGA-EW-A1PB-01A-11D-A141-01 e50f848e-a469-41c1-b44b-4dbc283fd0a6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E06_778014.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PB TCGA-EW-A1PB-01A TCGA-EW-A1PB-01A-11D-A141-01 e50f848e-a469-41c1-b44b-4dbc283fd0a6 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E06_778014.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1PB TCGA-EW-A1PB-01A TCGA-EW-A1PB-01A-11D-A142-09 9ddf2119-a222-4fa5-a9f3-0bec7eeea36b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PB TCGA-EW-A1PB-01A TCGA-EW-A1PB-01A-11D-A145-05 574424c7-1d48-4e52-9d4c-d5e9317d39f8 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PB TCGA-EW-A1PB-01A TCGA-EW-A1PB-01A-11D-A145-05 574424c7-1d48-4e52-9d4c-d5e9317d39f8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818055_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1PB TCGA-EW-A1PB-01A TCGA-EW-A1PB-01A-11D-A145-05 574424c7-1d48-4e52-9d4c-d5e9317d39f8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818055_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1PB TCGA-EW-A1PB-01A TCGA-EW-A1PB-01A-11D-A145-05 574424c7-1d48-4e52-9d4c-d5e9317d39f8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-EW-A1PB-01A-11D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-EW-A1PB TCGA-EW-A1PB-01A TCGA-EW-A1PB-01A-11D-A145-05 574424c7-1d48-4e52-9d4c-d5e9317d39f8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-EW-A1PB-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-EW-A1PB TCGA-EW-A1PB-01A TCGA-EW-A1PB-01A-11R-A143-13 3adf088e-ed61-4976-9de6-4a73e3f2337a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PB TCGA-EW-A1PB-01A TCGA-EW-A1PB-01A-11R-A143-13 3adf088e-ed61-4976-9de6-4a73e3f2337a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1PB-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1PB TCGA-EW-A1PB-01A TCGA-EW-A1PB-01A-11R-A143-13 3adf088e-ed61-4976-9de6-4a73e3f2337a miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1PB-01A-11R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1PB TCGA-EW-A1PB-01A TCGA-EW-A1PB-01A-11R-A144-07 50674dde-30c1-4530-a164-381d5326e29c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PB TCGA-EW-A1PB-01A TCGA-EW-A1PB-01A-11R-A144-07 50674dde-30c1-4530-a164-381d5326e29c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_456041.TCGA-EW-A1PB-01A-11R-A144-07.110829_UNC10-SN254_0272_BB07RMABXX.2.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1PB TCGA-EW-A1PB-01A TCGA-EW-A1PB-01A-11R-A144-07 50674dde-30c1-4530-a164-381d5326e29c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_456047.TCGA-EW-A1PB-01A-11R-A144-07.110829_UNC10-SN254_0272_BB07RMABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1PB TCGA-EW-A1PB-01A TCGA-EW-A1PB-01A-11R-A144-07 50674dde-30c1-4530-a164-381d5326e29c RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_456208.TCGA-EW-A1PB-01A-11R-A144-07.110829_UNC10-SN254_0272_BB07RMABXX.2.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1PB TCGA-EW-A1PB-01A TCGA-EW-A1PB-01A-11W-A187-09 28876b2e-932d-4208-b825-23899afcb5b4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PB TCGA-EW-A1PB-10A TCGA-EW-A1PB-10A-01D-A140-02 e73989dc-98b4-4a64-8d8a-5281225267c2 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PB TCGA-EW-A1PB-10A TCGA-EW-A1PB-10A-01D-A141-01 a9db3a76-ce2e-4a34-95c4-06f1bd5312f5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PB TCGA-EW-A1PB-10A TCGA-EW-A1PB-10A-01D-A141-01 a9db3a76-ce2e-4a34-95c4-06f1bd5312f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E08_778142.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1PB TCGA-EW-A1PB-10A TCGA-EW-A1PB-10A-01D-A141-01 a9db3a76-ce2e-4a34-95c4-06f1bd5312f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E08_778142.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PB TCGA-EW-A1PB-10A TCGA-EW-A1PB-10A-01D-A141-01 a9db3a76-ce2e-4a34-95c4-06f1bd5312f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E08_778142.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PB TCGA-EW-A1PB-10A TCGA-EW-A1PB-10A-01D-A141-01 a9db3a76-ce2e-4a34-95c4-06f1bd5312f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E08_778142.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PB TCGA-EW-A1PB-10A TCGA-EW-A1PB-10A-01D-A141-01 a9db3a76-ce2e-4a34-95c4-06f1bd5312f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E08_778142.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PB TCGA-EW-A1PB-10A TCGA-EW-A1PB-10A-01D-A141-01 a9db3a76-ce2e-4a34-95c4-06f1bd5312f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E08_778142.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PB TCGA-EW-A1PB-10A TCGA-EW-A1PB-10A-01D-A141-01 a9db3a76-ce2e-4a34-95c4-06f1bd5312f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E08_778142.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PB TCGA-EW-A1PB-10A TCGA-EW-A1PB-10A-01D-A141-01 a9db3a76-ce2e-4a34-95c4-06f1bd5312f5 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E08_778142.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1PB TCGA-EW-A1PB-10A TCGA-EW-A1PB-10A-01D-A142-09 26aa0f07-c813-4659-88fa-fdbae73a937e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PB TCGA-EW-A1PB-10A TCGA-EW-A1PB-10A-01W-A187-09 d673c50d-d496-4567-9de0-a074044a2499 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PB.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PD TCGA-EW-A1PD-01A TCGA-EW-A1PD-01A-11D-A140-02 98519e6f-8543-4dc6-be3e-ec02e94ab7a6 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PD TCGA-EW-A1PD-01A TCGA-EW-A1PD-01A-11D-A141-01 954517bf-4fed-4279-9e69-f036b0a48858 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PD TCGA-EW-A1PD-01A TCGA-EW-A1PD-01A-11D-A141-01 954517bf-4fed-4279-9e69-f036b0a48858 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E09_778096.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1PD TCGA-EW-A1PD-01A TCGA-EW-A1PD-01A-11D-A141-01 954517bf-4fed-4279-9e69-f036b0a48858 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E09_778096.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PD TCGA-EW-A1PD-01A TCGA-EW-A1PD-01A-11D-A141-01 954517bf-4fed-4279-9e69-f036b0a48858 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E09_778096.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PD TCGA-EW-A1PD-01A TCGA-EW-A1PD-01A-11D-A141-01 954517bf-4fed-4279-9e69-f036b0a48858 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E09_778096.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PD TCGA-EW-A1PD-01A TCGA-EW-A1PD-01A-11D-A141-01 954517bf-4fed-4279-9e69-f036b0a48858 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E09_778096.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PD TCGA-EW-A1PD-01A TCGA-EW-A1PD-01A-11D-A141-01 954517bf-4fed-4279-9e69-f036b0a48858 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E09_778096.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PD TCGA-EW-A1PD-01A TCGA-EW-A1PD-01A-11D-A141-01 954517bf-4fed-4279-9e69-f036b0a48858 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E09_778096.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PD TCGA-EW-A1PD-01A TCGA-EW-A1PD-01A-11D-A141-01 954517bf-4fed-4279-9e69-f036b0a48858 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E09_778096.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1PD TCGA-EW-A1PD-01A TCGA-EW-A1PD-01A-11D-A142-09 5a288561-bf14-4cb9-b2f5-9ece0e038319 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PD TCGA-EW-A1PD-01A TCGA-EW-A1PD-01A-11D-A145-05 70691324-1f44-4f90-9206-0f0dd3427f1a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PD TCGA-EW-A1PD-01A TCGA-EW-A1PD-01A-11D-A145-05 70691324-1f44-4f90-9206-0f0dd3427f1a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818055_R04C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1PD TCGA-EW-A1PD-01A TCGA-EW-A1PD-01A-11D-A145-05 70691324-1f44-4f90-9206-0f0dd3427f1a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818055_R04C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1PD TCGA-EW-A1PD-01A TCGA-EW-A1PD-01A-11D-A145-05 70691324-1f44-4f90-9206-0f0dd3427f1a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-EW-A1PD-01A-11D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-EW-A1PD TCGA-EW-A1PD-01A TCGA-EW-A1PD-01A-11D-A145-05 70691324-1f44-4f90-9206-0f0dd3427f1a DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-EW-A1PD-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-EW-A1PD TCGA-EW-A1PD-01A TCGA-EW-A1PD-01A-11R-A143-13 1222c707-f3ff-47b1-89f0-05f79e6d9dcb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PD TCGA-EW-A1PD-01A TCGA-EW-A1PD-01A-11R-A143-13 1222c707-f3ff-47b1-89f0-05f79e6d9dcb miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1PD-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1PD TCGA-EW-A1PD-01A TCGA-EW-A1PD-01A-11R-A143-13 1222c707-f3ff-47b1-89f0-05f79e6d9dcb miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1PD-01A-11R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1PD TCGA-EW-A1PD-01A TCGA-EW-A1PD-01A-11R-A144-07 69971d5c-5be4-4886-bf7c-753de9593a1e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PD TCGA-EW-A1PD-01A TCGA-EW-A1PD-01A-11R-A144-07 69971d5c-5be4-4886-bf7c-753de9593a1e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_456211.TCGA-EW-A1PD-01A-11R-A144-07.110829_UNC10-SN254_0272_BB07RMABXX.3.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1PD TCGA-EW-A1PD-01A TCGA-EW-A1PD-01A-11R-A144-07 69971d5c-5be4-4886-bf7c-753de9593a1e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_456235.TCGA-EW-A1PD-01A-11R-A144-07.110829_UNC10-SN254_0272_BB07RMABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1PD TCGA-EW-A1PD-01A TCGA-EW-A1PD-01A-11R-A144-07 69971d5c-5be4-4886-bf7c-753de9593a1e RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_456372.TCGA-EW-A1PD-01A-11R-A144-07.110829_UNC10-SN254_0272_BB07RMABXX.3.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1PD TCGA-EW-A1PD-01A TCGA-EW-A1PD-01A-11W-A187-09 d6f4a226-54bd-4331-a1eb-7a9467718c5d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PD TCGA-EW-A1PD-10A TCGA-EW-A1PD-10A-01D-A140-02 402861eb-108b-447e-b948-7966314af2c5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PD TCGA-EW-A1PD-10A TCGA-EW-A1PD-10A-01D-A141-01 741e5076-bf4e-44d4-a143-231bb585f781 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PD TCGA-EW-A1PD-10A TCGA-EW-A1PD-10A-01D-A141-01 741e5076-bf4e-44d4-a143-231bb585f781 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G02_778008.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1PD TCGA-EW-A1PD-10A TCGA-EW-A1PD-10A-01D-A141-01 741e5076-bf4e-44d4-a143-231bb585f781 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G02_778008.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PD TCGA-EW-A1PD-10A TCGA-EW-A1PD-10A-01D-A141-01 741e5076-bf4e-44d4-a143-231bb585f781 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G02_778008.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PD TCGA-EW-A1PD-10A TCGA-EW-A1PD-10A-01D-A141-01 741e5076-bf4e-44d4-a143-231bb585f781 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G02_778008.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PD TCGA-EW-A1PD-10A TCGA-EW-A1PD-10A-01D-A141-01 741e5076-bf4e-44d4-a143-231bb585f781 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G02_778008.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PD TCGA-EW-A1PD-10A TCGA-EW-A1PD-10A-01D-A141-01 741e5076-bf4e-44d4-a143-231bb585f781 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G02_778008.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PD TCGA-EW-A1PD-10A TCGA-EW-A1PD-10A-01D-A141-01 741e5076-bf4e-44d4-a143-231bb585f781 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G02_778008.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PD TCGA-EW-A1PD-10A TCGA-EW-A1PD-10A-01D-A141-01 741e5076-bf4e-44d4-a143-231bb585f781 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_G02_778008.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1PD TCGA-EW-A1PD-10A TCGA-EW-A1PD-10A-01D-A142-09 8e2913c9-4903-4d07-a706-a42e19b2ed7a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PD TCGA-EW-A1PD-10A TCGA-EW-A1PD-10A-01W-A187-09 5a80096b-c6d1-4550-a79b-7ec1359044b5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PD.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PE TCGA-EW-A1PE-01A TCGA-EW-A1PE-01A-11D-A140-02 c88862b5-4d7a-4e9f-a470-91c275313fd9 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PE TCGA-EW-A1PE-01A TCGA-EW-A1PE-01A-11D-A141-01 edb71760-a163-45eb-9e5a-671cdebc2539 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PE TCGA-EW-A1PE-01A TCGA-EW-A1PE-01A-11D-A141-01 edb71760-a163-45eb-9e5a-671cdebc2539 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E12_778144.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1PE TCGA-EW-A1PE-01A TCGA-EW-A1PE-01A-11D-A141-01 edb71760-a163-45eb-9e5a-671cdebc2539 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E12_778144.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PE TCGA-EW-A1PE-01A TCGA-EW-A1PE-01A-11D-A141-01 edb71760-a163-45eb-9e5a-671cdebc2539 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E12_778144.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PE TCGA-EW-A1PE-01A TCGA-EW-A1PE-01A-11D-A141-01 edb71760-a163-45eb-9e5a-671cdebc2539 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E12_778144.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PE TCGA-EW-A1PE-01A TCGA-EW-A1PE-01A-11D-A141-01 edb71760-a163-45eb-9e5a-671cdebc2539 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E12_778144.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PE TCGA-EW-A1PE-01A TCGA-EW-A1PE-01A-11D-A141-01 edb71760-a163-45eb-9e5a-671cdebc2539 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E12_778144.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PE TCGA-EW-A1PE-01A TCGA-EW-A1PE-01A-11D-A141-01 edb71760-a163-45eb-9e5a-671cdebc2539 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E12_778144.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PE TCGA-EW-A1PE-01A TCGA-EW-A1PE-01A-11D-A141-01 edb71760-a163-45eb-9e5a-671cdebc2539 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_E12_778144.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1PE TCGA-EW-A1PE-01A TCGA-EW-A1PE-01A-11D-A142-09 54377bac-8f52-4116-b7e5-b71a8a721ac4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PE TCGA-EW-A1PE-01A TCGA-EW-A1PE-01A-11D-A145-05 de3aaed5-590a-4d0a-8ea5-69ebb204d55b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PE TCGA-EW-A1PE-01A TCGA-EW-A1PE-01A-11D-A145-05 de3aaed5-590a-4d0a-8ea5-69ebb204d55b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818122_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1PE TCGA-EW-A1PE-01A TCGA-EW-A1PE-01A-11D-A145-05 de3aaed5-590a-4d0a-8ea5-69ebb204d55b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818122_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1PE TCGA-EW-A1PE-01A TCGA-EW-A1PE-01A-11D-A145-05 de3aaed5-590a-4d0a-8ea5-69ebb204d55b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-EW-A1PE-01A-11D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-EW-A1PE TCGA-EW-A1PE-01A TCGA-EW-A1PE-01A-11D-A145-05 de3aaed5-590a-4d0a-8ea5-69ebb204d55b DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-EW-A1PE-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-EW-A1PE TCGA-EW-A1PE-01A TCGA-EW-A1PE-01A-11R-A143-13 207fa5ea-d54e-4cc2-9280-84bd24274eb5 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PE TCGA-EW-A1PE-01A TCGA-EW-A1PE-01A-11R-A143-13 207fa5ea-d54e-4cc2-9280-84bd24274eb5 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1PE-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1PE TCGA-EW-A1PE-01A TCGA-EW-A1PE-01A-11R-A143-13 207fa5ea-d54e-4cc2-9280-84bd24274eb5 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1PE-01A-11R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1PE TCGA-EW-A1PE-01A TCGA-EW-A1PE-01A-11R-A144-07 4a21d42c-b231-4ffc-8c15-4bd73bf610b4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PE TCGA-EW-A1PE-01A TCGA-EW-A1PE-01A-11R-A144-07 4a21d42c-b231-4ffc-8c15-4bd73bf610b4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_456042.TCGA-EW-A1PE-01A-11R-A144-07.110829_UNC10-SN254_0272_BB07RMABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1PE TCGA-EW-A1PE-01A TCGA-EW-A1PE-01A-11R-A144-07 4a21d42c-b231-4ffc-8c15-4bd73bf610b4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_456046.TCGA-EW-A1PE-01A-11R-A144-07.110829_UNC10-SN254_0272_BB07RMABXX.4.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1PE TCGA-EW-A1PE-01A TCGA-EW-A1PE-01A-11R-A144-07 4a21d42c-b231-4ffc-8c15-4bd73bf610b4 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_456234.TCGA-EW-A1PE-01A-11R-A144-07.110829_UNC10-SN254_0272_BB07RMABXX.4.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1PE TCGA-EW-A1PE-01A TCGA-EW-A1PE-01A-11W-A187-09 e71f1246-4665-464f-a503-29db33e3196e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PE TCGA-EW-A1PE-10A TCGA-EW-A1PE-10A-01D-A140-02 6c331ec1-ed2c-48bf-a2d6-7195c58950ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PE TCGA-EW-A1PE-10A TCGA-EW-A1PE-10A-01D-A141-01 be6b080f-d0d4-4e48-a505-ad0c01ff0a5d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PE TCGA-EW-A1PE-10A TCGA-EW-A1PE-10A-01D-A141-01 be6b080f-d0d4-4e48-a505-ad0c01ff0a5d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A12_778090.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1PE TCGA-EW-A1PE-10A TCGA-EW-A1PE-10A-01D-A141-01 be6b080f-d0d4-4e48-a505-ad0c01ff0a5d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A12_778090.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PE TCGA-EW-A1PE-10A TCGA-EW-A1PE-10A-01D-A141-01 be6b080f-d0d4-4e48-a505-ad0c01ff0a5d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A12_778090.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PE TCGA-EW-A1PE-10A TCGA-EW-A1PE-10A-01D-A141-01 be6b080f-d0d4-4e48-a505-ad0c01ff0a5d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A12_778090.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PE TCGA-EW-A1PE-10A TCGA-EW-A1PE-10A-01D-A141-01 be6b080f-d0d4-4e48-a505-ad0c01ff0a5d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A12_778090.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PE TCGA-EW-A1PE-10A TCGA-EW-A1PE-10A-01D-A141-01 be6b080f-d0d4-4e48-a505-ad0c01ff0a5d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A12_778090.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PE TCGA-EW-A1PE-10A TCGA-EW-A1PE-10A-01D-A141-01 be6b080f-d0d4-4e48-a505-ad0c01ff0a5d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A12_778090.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PE TCGA-EW-A1PE-10A TCGA-EW-A1PE-10A-01D-A141-01 be6b080f-d0d4-4e48-a505-ad0c01ff0a5d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_A12_778090.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1PE TCGA-EW-A1PE-10A TCGA-EW-A1PE-10A-01D-A142-09 e18ccc97-6ed5-48fb-85ce-6a9484ce18bd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PE TCGA-EW-A1PE-10A TCGA-EW-A1PE-10A-01W-A187-09 3aa05517-3e05-4789-a280-50dccaa74126 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PE.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PF TCGA-EW-A1PF-01A TCGA-EW-A1PF-01A-11D-A140-02 7595c996-fbdc-4f53-8ff7-dc1b83302f25 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PF TCGA-EW-A1PF-01A TCGA-EW-A1PF-01A-11D-A141-01 c8b29059-d76b-4b62-9a59-31f7dc9bc3a1 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PF TCGA-EW-A1PF-01A TCGA-EW-A1PF-01A-11D-A141-01 c8b29059-d76b-4b62-9a59-31f7dc9bc3a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C10_778000.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1PF TCGA-EW-A1PF-01A TCGA-EW-A1PF-01A-11D-A141-01 c8b29059-d76b-4b62-9a59-31f7dc9bc3a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C10_778000.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PF TCGA-EW-A1PF-01A TCGA-EW-A1PF-01A-11D-A141-01 c8b29059-d76b-4b62-9a59-31f7dc9bc3a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C10_778000.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PF TCGA-EW-A1PF-01A TCGA-EW-A1PF-01A-11D-A141-01 c8b29059-d76b-4b62-9a59-31f7dc9bc3a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C10_778000.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PF TCGA-EW-A1PF-01A TCGA-EW-A1PF-01A-11D-A141-01 c8b29059-d76b-4b62-9a59-31f7dc9bc3a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C10_778000.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PF TCGA-EW-A1PF-01A TCGA-EW-A1PF-01A-11D-A141-01 c8b29059-d76b-4b62-9a59-31f7dc9bc3a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C10_778000.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PF TCGA-EW-A1PF-01A TCGA-EW-A1PF-01A-11D-A141-01 c8b29059-d76b-4b62-9a59-31f7dc9bc3a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C10_778000.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PF TCGA-EW-A1PF-01A TCGA-EW-A1PF-01A-11D-A141-01 c8b29059-d76b-4b62-9a59-31f7dc9bc3a1 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_C10_778000.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1PF TCGA-EW-A1PF-01A TCGA-EW-A1PF-01A-11D-A142-09 1a0e84db-e00d-41c3-87d5-dd3f2cbb5883 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PF TCGA-EW-A1PF-01A TCGA-EW-A1PF-01A-11D-A145-05 1253b6c1-f5be-465f-9ffc-d580de72d38d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PF TCGA-EW-A1PF-01A TCGA-EW-A1PF-01A-11D-A145-05 1253b6c1-f5be-465f-9ffc-d580de72d38d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818122_R01C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1PF TCGA-EW-A1PF-01A TCGA-EW-A1PF-01A-11D-A145-05 1253b6c1-f5be-465f-9ffc-d580de72d38d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818122_R01C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1PF TCGA-EW-A1PF-01A TCGA-EW-A1PF-01A-11D-A145-05 1253b6c1-f5be-465f-9ffc-d580de72d38d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-EW-A1PF-01A-11D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-EW-A1PF TCGA-EW-A1PF-01A TCGA-EW-A1PF-01A-11D-A145-05 1253b6c1-f5be-465f-9ffc-d580de72d38d DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-EW-A1PF-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-EW-A1PF TCGA-EW-A1PF-01A TCGA-EW-A1PF-01A-11R-A143-13 f60fb8e9-78ff-4a51-b965-3011026d66fd Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PF TCGA-EW-A1PF-01A TCGA-EW-A1PF-01A-11R-A143-13 f60fb8e9-78ff-4a51-b965-3011026d66fd miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1PF-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1PF TCGA-EW-A1PF-01A TCGA-EW-A1PF-01A-11R-A143-13 f60fb8e9-78ff-4a51-b965-3011026d66fd miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1PF-01A-11R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1PF TCGA-EW-A1PF-01A TCGA-EW-A1PF-01A-11R-A144-07 faa3383f-6f9f-43d8-b61d-4a1522a71444 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PF TCGA-EW-A1PF-01A TCGA-EW-A1PF-01A-11R-A144-07 faa3383f-6f9f-43d8-b61d-4a1522a71444 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_456166.TCGA-EW-A1PF-01A-11R-A144-07.110829_UNC10-SN254_0272_BB07RMABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1PF TCGA-EW-A1PF-01A TCGA-EW-A1PF-01A-11R-A144-07 faa3383f-6f9f-43d8-b61d-4a1522a71444 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_456259.TCGA-EW-A1PF-01A-11R-A144-07.110829_UNC10-SN254_0272_BB07RMABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1PF TCGA-EW-A1PF-01A TCGA-EW-A1PF-01A-11R-A144-07 faa3383f-6f9f-43d8-b61d-4a1522a71444 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_456382.TCGA-EW-A1PF-01A-11R-A144-07.110829_UNC10-SN254_0272_BB07RMABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1PF TCGA-EW-A1PF-01A TCGA-EW-A1PF-01A-11W-A187-09 adc66c08-c9a1-47b7-b891-4a764aee1fe4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PF TCGA-EW-A1PF-10A TCGA-EW-A1PF-10A-01D-A140-02 d39e6648-89c5-450f-9907-34a2e139ca75 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PF TCGA-EW-A1PF-10A TCGA-EW-A1PF-10A-01D-A141-01 4597d3d3-fb0f-4aee-a398-2e02a1e03e2d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D01_778050.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D01_778050.ismpolish.data.txt'. TCGA-EW-A1PF TCGA-EW-A1PF-10A TCGA-EW-A1PF-10A-01D-A141-01 4597d3d3-fb0f-4aee-a398-2e02a1e03e2d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D01_778050.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D01_778050.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D01_778050.ismpolish.data.txt'. TCGA-EW-A1PF TCGA-EW-A1PF-10A TCGA-EW-A1PF-10A-01D-A141-01 4597d3d3-fb0f-4aee-a398-2e02a1e03e2d SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D01_778050.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM CenterNotification Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D01_778050.birdseed.data.txt'. / SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.1008.0 flagged aliquot to be excluded for analysis based on file 'GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_D01_778050.ismpolish.data.txt'. TCGA-EW-A1PF TCGA-EW-A1PF-10A TCGA-EW-A1PF-10A-01D-A142-09 e916d4fb-307e-40d2-8f8d-e605a6e4a24f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PF TCGA-EW-A1PF-10A TCGA-EW-A1PF-10A-01W-A187-09 885d7ef3-2f96-4a28-8509-e0701d55818c Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PF.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PG TCGA-EW-A1PG-01A TCGA-EW-A1PG-01A-11D-A140-02 39c811c0-6ef4-4e8a-8c0d-f8bad8619938 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PG TCGA-EW-A1PG-01A TCGA-EW-A1PG-01A-11D-A141-01 ae1d6f65-aca6-4e15-86e3-f9a6db8a726b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PG TCGA-EW-A1PG-01A TCGA-EW-A1PG-01A-11D-A141-01 ae1d6f65-aca6-4e15-86e3-f9a6db8a726b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F03_777968.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1PG TCGA-EW-A1PG-01A TCGA-EW-A1PG-01A-11D-A141-01 ae1d6f65-aca6-4e15-86e3-f9a6db8a726b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F03_777968.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PG TCGA-EW-A1PG-01A TCGA-EW-A1PG-01A-11D-A141-01 ae1d6f65-aca6-4e15-86e3-f9a6db8a726b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F03_777968.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PG TCGA-EW-A1PG-01A TCGA-EW-A1PG-01A-11D-A141-01 ae1d6f65-aca6-4e15-86e3-f9a6db8a726b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F03_777968.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PG TCGA-EW-A1PG-01A TCGA-EW-A1PG-01A-11D-A141-01 ae1d6f65-aca6-4e15-86e3-f9a6db8a726b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F03_777968.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PG TCGA-EW-A1PG-01A TCGA-EW-A1PG-01A-11D-A141-01 ae1d6f65-aca6-4e15-86e3-f9a6db8a726b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F03_777968.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PG TCGA-EW-A1PG-01A TCGA-EW-A1PG-01A-11D-A141-01 ae1d6f65-aca6-4e15-86e3-f9a6db8a726b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F03_777968.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PG TCGA-EW-A1PG-01A TCGA-EW-A1PG-01A-11D-A141-01 ae1d6f65-aca6-4e15-86e3-f9a6db8a726b SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_F03_777968.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1PG TCGA-EW-A1PG-01A TCGA-EW-A1PG-01A-11D-A142-09 bd3801e2-c5bb-4116-9ce3-97903fc6956e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PG TCGA-EW-A1PG-01A TCGA-EW-A1PG-01A-11D-A145-05 4aafda2d-c69a-41c0-a436-b6c1f75082c3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PG TCGA-EW-A1PG-01A TCGA-EW-A1PG-01A-11D-A145-05 4aafda2d-c69a-41c0-a436-b6c1f75082c3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818111_R03C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1PG TCGA-EW-A1PG-01A TCGA-EW-A1PG-01A-11D-A145-05 4aafda2d-c69a-41c0-a436-b6c1f75082c3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0/6026818111_R03C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.10.1.0 117 07-NOV-11 05.14.00.024000000 PM TCGA-EW-A1PG TCGA-EW-A1PG-01A TCGA-EW-A1PG-01A-11D-A145-05 4aafda2d-c69a-41c0-a436-b6c1f75082c3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-2.TCGA-EW-A1PG-01A-11D-A145-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.10.1.0 117 07-NOV-11 05.39.03.216000000 PM TCGA-EW-A1PG TCGA-EW-A1PG-01A TCGA-EW-A1PG-01A-11D-A145-05 4aafda2d-c69a-41c0-a436-b6c1f75082c3 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0/jhu-usc.edu_BRCA.HumanMethylation450.10.lvl-3.TCGA-EW-A1PG-01A-11D-A145-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.10.1.0 117 07-NOV-11 05.34.33.864000000 PM TCGA-EW-A1PG TCGA-EW-A1PG-01A TCGA-EW-A1PG-01A-11R-A143-13 c14f458b-27a0-4155-968b-bb18ea66002e Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PG TCGA-EW-A1PG-01A TCGA-EW-A1PG-01A-11R-A143-13 c14f458b-27a0-4155-968b-bb18ea66002e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1PG-01A-11R-A143-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1PG TCGA-EW-A1PG-01A TCGA-EW-A1PG-01A-11R-A143-13 c14f458b-27a0-4155-968b-bb18ea66002e miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1PG-01A-11R-A143-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 117 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1PG TCGA-EW-A1PG-01A TCGA-EW-A1PG-01A-11R-A144-07 1205dc3c-e766-4a25-b485-c66e301e3b6d Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PG TCGA-EW-A1PG-01A TCGA-EW-A1PG-01A-11R-A144-07 1205dc3c-e766-4a25-b485-c66e301e3b6d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_841433.TCGA-EW-A1PG-01A-11R-A144-07.111014_UNC10-SN254_0289_AC00VNABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1PG TCGA-EW-A1PG-01A TCGA-EW-A1PG-01A-11R-A144-07 1205dc3c-e766-4a25-b485-c66e301e3b6d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_841451.TCGA-EW-A1PG-01A-11R-A144-07.111014_UNC10-SN254_0289_AC00VNABXX.5.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1PG TCGA-EW-A1PG-01A TCGA-EW-A1PG-01A-11R-A144-07 1205dc3c-e766-4a25-b485-c66e301e3b6d RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_841509.TCGA-EW-A1PG-01A-11R-A144-07.111014_UNC10-SN254_0289_AC00VNABXX.5.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 117 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A1PG TCGA-EW-A1PG-01A TCGA-EW-A1PG-01A-11W-A187-09 b0c9417e-782f-4989-8d13-4636c489be93 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PG TCGA-EW-A1PG-10A TCGA-EW-A1PG-10A-01D-A140-02 2622c381-0c8a-469a-8a66-8bd17ad293ed Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PG TCGA-EW-A1PG-10A TCGA-EW-A1PG-10A-01D-A141-01 707b164d-9a84-411b-b901-e37f3ce099dc Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PG TCGA-EW-A1PG-10A TCGA-EW-A1PG-10A-01D-A141-01 707b164d-9a84-411b-b901-e37f3ce099dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B04_778150.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.117.1008.0 117 07-DEC-11 11.17.27.971000000 AM TCGA-EW-A1PG TCGA-EW-A1PG-10A TCGA-EW-A1PG-10A-01D-A141-01 707b164d-9a84-411b-b901-e37f3ce099dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B04_778150.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PG TCGA-EW-A1PG-10A TCGA-EW-A1PG-10A-01D-A141-01 707b164d-9a84-411b-b901-e37f3ce099dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B04_778150.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PG TCGA-EW-A1PG-10A TCGA-EW-A1PG-10A-01D-A141-01 707b164d-9a84-411b-b901-e37f3ce099dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B04_778150.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PG TCGA-EW-A1PG-10A TCGA-EW-A1PG-10A-01D-A141-01 707b164d-9a84-411b-b901-e37f3ce099dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B04_778150.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PG TCGA-EW-A1PG-10A TCGA-EW-A1PG-10A-01D-A141-01 707b164d-9a84-411b-b901-e37f3ce099dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B04_778150.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PG TCGA-EW-A1PG-10A TCGA-EW-A1PG-10A-01D-A141-01 707b164d-9a84-411b-b901-e37f3ce099dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B04_778150.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.117.1008.0 117 07-DEC-11 11.48.39.480000000 AM TCGA-EW-A1PG TCGA-EW-A1PG-10A TCGA-EW-A1PG-10A-01D-A141-01 707b164d-9a84-411b-b901-e37f3ce099dc SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0/GOOFS_p_TCGA_b117_118_SNP_N_GenomeWideSNP_6_B04_778150.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.117.1008.0 117 07-DEC-11 01.00.00.722000000 PM TCGA-EW-A1PG TCGA-EW-A1PG-10A TCGA-EW-A1PG-10A-01D-A142-09 01c3cc25-bb81-4cc3-a9aa-e07f44991c3f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PG TCGA-EW-A1PG-10A TCGA-EW-A1PG-10A-01W-A187-09 d8014ee5-6dfc-4946-8b2e-145584e9f79b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.117.14.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PG.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.117.14.0 117 12-JAN-12 08.38.08.911000000 PM TCGA-EW-A1PH TCGA-EW-A1PH-01A TCGA-EW-A1PH-01A-11D-A14I-02 23a73bec-cb4e-4b4c-8c68-8b292daaee79 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-EW-A1PH TCGA-EW-A1PH-01A TCGA-EW-A1PH-01A-11D-A14J-01 9bbe17d3-db31-4ab5-8fea-9c222bc1bbba Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-EW-A1PH TCGA-EW-A1PH-01A TCGA-EW-A1PH-01A-11D-A14J-01 9bbe17d3-db31-4ab5-8fea-9c222bc1bbba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C02_780922.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0 124 07-DEC-11 11.20.29.794000000 AM TCGA-EW-A1PH TCGA-EW-A1PH-01A TCGA-EW-A1PH-01A-11D-A14J-01 9bbe17d3-db31-4ab5-8fea-9c222bc1bbba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C02_780922.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-EW-A1PH TCGA-EW-A1PH-01A TCGA-EW-A1PH-01A-11D-A14J-01 9bbe17d3-db31-4ab5-8fea-9c222bc1bbba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C02_780922.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-EW-A1PH TCGA-EW-A1PH-01A TCGA-EW-A1PH-01A-11D-A14J-01 9bbe17d3-db31-4ab5-8fea-9c222bc1bbba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C02_780922.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-EW-A1PH TCGA-EW-A1PH-01A TCGA-EW-A1PH-01A-11D-A14J-01 9bbe17d3-db31-4ab5-8fea-9c222bc1bbba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C02_780922.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-EW-A1PH TCGA-EW-A1PH-01A TCGA-EW-A1PH-01A-11D-A14J-01 9bbe17d3-db31-4ab5-8fea-9c222bc1bbba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C02_780922.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-EW-A1PH TCGA-EW-A1PH-01A TCGA-EW-A1PH-01A-11D-A14J-01 9bbe17d3-db31-4ab5-8fea-9c222bc1bbba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C02_780922.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-EW-A1PH TCGA-EW-A1PH-01A TCGA-EW-A1PH-01A-11D-A14J-01 9bbe17d3-db31-4ab5-8fea-9c222bc1bbba SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C02_780922.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0 124 07-DEC-11 01.00.01.995000000 PM TCGA-EW-A1PH TCGA-EW-A1PH-01A TCGA-EW-A1PH-01A-11D-A14K-09 ce860c6f-c87a-4a45-92df-ca34bfb2e8b2 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.12.1.0/jhu-usc.edu_BRCA.HumanMethylation450.12.lvl-2.TCGA-EW-A1PH-01A-11D-A14N-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.12.1.0 124 07-NOV-11 04.55.54.995000000 PM TCGA-EW-A1PH TCGA-EW-A1PH-01A TCGA-EW-A1PH-01A-11D-A14N-05 b73176a0-c282-403f-9697-d9b79ab31ca8 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.12.1.0/jhu-usc.edu_BRCA.HumanMethylation450.12.lvl-3.TCGA-EW-A1PH-01A-11D-A14N-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.12.1.0 124 07-NOV-11 05.36.33.757000000 PM TCGA-EW-A1PH TCGA-EW-A1PH-01A TCGA-EW-A1PH-01A-11D-A17G-09 df291849-4c35-44e1-b013-8f6b7ee36113 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1PH-01A-11R-A14L-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 124 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1PH TCGA-EW-A1PH-01A TCGA-EW-A1PH-01A-11R-A14L-13 aaeada06-0981-4242-b402-79600be21bf4 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A1PH-01A-11R-A14L-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 124 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A1PH TCGA-EW-A1PH-01A TCGA-EW-A1PH-01A-11R-A14M-07 39413018-090f-46ca-b6df-244124f098c3 Complete Clinical Set bio 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/tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-EW-A1PH TCGA-EW-A1PH-10A TCGA-EW-A1PH-10A-01D-A14I-02 5ee3c4eb-3262-4b18-a0c9-45d6596a6411 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-EW-A1PH TCGA-EW-A1PH-10A TCGA-EW-A1PH-10A-01D-A14J-01 83c11990-435b-4733-99a2-dc02e7da2a48 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-EW-A1PH TCGA-EW-A1PH-10A TCGA-EW-A1PH-10A-01D-A14J-01 83c11990-435b-4733-99a2-dc02e7da2a48 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C04_780824.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.124.1008.0 124 07-DEC-11 11.20.29.794000000 AM TCGA-EW-A1PH TCGA-EW-A1PH-10A TCGA-EW-A1PH-10A-01D-A14J-01 83c11990-435b-4733-99a2-dc02e7da2a48 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C04_780824.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-EW-A1PH TCGA-EW-A1PH-10A TCGA-EW-A1PH-10A-01D-A14J-01 83c11990-435b-4733-99a2-dc02e7da2a48 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C04_780824.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-EW-A1PH TCGA-EW-A1PH-10A TCGA-EW-A1PH-10A-01D-A14J-01 83c11990-435b-4733-99a2-dc02e7da2a48 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C04_780824.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-EW-A1PH TCGA-EW-A1PH-10A TCGA-EW-A1PH-10A-01D-A14J-01 83c11990-435b-4733-99a2-dc02e7da2a48 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C04_780824.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.124.1008.0 124 07-DEC-11 11.59.13.382000000 AM TCGA-EW-A1PH TCGA-EW-A1PH-10A TCGA-EW-A1PH-10A-01D-A14J-01 83c11990-435b-4733-99a2-dc02e7da2a48 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0/BULGY_p_TCGA_bM1_124_SNP_N_GenomeWideSNP_6_C04_780824.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.124.1008.0 124 07-DEC-11 01.00.01.995000000 PM TCGA-EW-A1PH TCGA-EW-A1PH-10A TCGA-EW-A1PH-10A-01D-A14K-09 28823da8-d29d-48c6-ae45-0ea4cdc23f52 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-EW-A1PH TCGA-EW-A1PH-10A TCGA-EW-A1PH-10A-01D-A17G-09 8f191915-d076-4c9e-95c7-1de76ea96cc0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-EW-A1PH TCGA-EW-A1PH-10A TCGA-EW-A1PH-10A-01W-A16I-09 2aee65f3-56bf-4460-993d-5e578ddcc5ec Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.124.15.0/nationwidechildrens.org_biospecimen.TCGA-EW-A1PH.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.124.15.0 124 01-FEB-12 04.45.32.067000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-01A TCGA-EW-A2FS-01A-11D-A17C-01 21baef37-e289-498a-b523-a283df5485af Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-EW-A2FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-01A TCGA-EW-A2FS-01A-11D-A17C-01 21baef37-e289-498a-b523-a283df5485af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H03_808600.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.155.1008.0 155 07-DEC-11 11.22.18.805000000 AM TCGA-EW-A2FS TCGA-EW-A2FS-01A TCGA-EW-A2FS-01A-11D-A17C-01 21baef37-e289-498a-b523-a283df5485af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H03_808600.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-01A TCGA-EW-A2FS-01A-11D-A17C-01 21baef37-e289-498a-b523-a283df5485af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H03_808600.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-01A TCGA-EW-A2FS-01A-11D-A17C-01 21baef37-e289-498a-b523-a283df5485af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H03_808600.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-01A TCGA-EW-A2FS-01A-11D-A17C-01 21baef37-e289-498a-b523-a283df5485af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H03_808600.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-01A TCGA-EW-A2FS-01A-11D-A17C-01 21baef37-e289-498a-b523-a283df5485af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H03_808600.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-01A TCGA-EW-A2FS-01A-11D-A17C-01 21baef37-e289-498a-b523-a283df5485af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H03_808600.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-01A TCGA-EW-A2FS-01A-11D-A17C-01 21baef37-e289-498a-b523-a283df5485af SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H03_808600.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.155.1008.0 155 07-DEC-11 01.00.05.091000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-01A TCGA-EW-A2FS-01A-11D-A17D-09 e8aeaa53-be93-48db-bf32-900947a6cf05 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-EW-A2FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-01A TCGA-EW-A2FS-01A-11D-A17E-02 baed5a2c-e3cc-4ee9-866f-04ed459a75ab Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-EW-A2FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-01A TCGA-EW-A2FS-01A-11D-A17F-05 fc51c719-1511-461c-b8c9-e837466245aa Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-EW-A2FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-01A TCGA-EW-A2FS-01A-11D-A17F-05 fc51c719-1511-461c-b8c9-e837466245aa DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.16.1.0/6057833166_R05C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.16.1.0 155 07-NOV-11 04.28.40.688000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-01A TCGA-EW-A2FS-01A-11D-A17F-05 fc51c719-1511-461c-b8c9-e837466245aa DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.16.1.0/6057833166_R05C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.16.1.0 155 07-NOV-11 04.28.40.688000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-01A TCGA-EW-A2FS-01A-11D-A17F-05 fc51c719-1511-461c-b8c9-e837466245aa DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.16.1.0/jhu-usc.edu_BRCA.HumanMethylation450.16.lvl-2.TCGA-EW-A2FS-01A-11D-A17F-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.16.1.0 155 07-NOV-11 05.12.17.553000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-01A TCGA-EW-A2FS-01A-11D-A17F-05 fc51c719-1511-461c-b8c9-e837466245aa DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.16.1.0/jhu-usc.edu_BRCA.HumanMethylation450.16.lvl-3.TCGA-EW-A2FS-01A-11D-A17F-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.16.1.0 155 07-NOV-11 05.40.09.858000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-01A TCGA-EW-A2FS-01A-11R-A17A-13 0838611d-1578-4ccc-86f7-9193073a8ad4 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-EW-A2FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-01A TCGA-EW-A2FS-01A-11R-A17A-13 0838611d-1578-4ccc-86f7-9193073a8ad4 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A2FS-01A-11R-A17A-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 155 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-01A TCGA-EW-A2FS-01A-11R-A17A-13 0838611d-1578-4ccc-86f7-9193073a8ad4 miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A2FS-01A-11R-A17A-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 155 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-01A TCGA-EW-A2FS-01A-11R-A17B-07 c0f29396-d239-4f0d-a95a-0838770eb24a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-EW-A2FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-01A TCGA-EW-A2FS-01A-11R-A17B-07 c0f29396-d239-4f0d-a95a-0838770eb24a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_559161.TCGA-EW-A2FS-01A-11R-A17B-07.111003_UNC13-SN749_0121_AB020YABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 155 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-01A TCGA-EW-A2FS-01A-11R-A17B-07 c0f29396-d239-4f0d-a95a-0838770eb24a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_559170.TCGA-EW-A2FS-01A-11R-A17B-07.111003_UNC13-SN749_0121_AB020YABXX.7.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 155 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-01A TCGA-EW-A2FS-01A-11R-A17B-07 c0f29396-d239-4f0d-a95a-0838770eb24a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_559226.TCGA-EW-A2FS-01A-11R-A17B-07.111003_UNC13-SN749_0121_AB020YABXX.7.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 155 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-01A TCGA-EW-A2FS-01A-11W-A186-09 b91d0a00-a4b4-4e60-8b44-6b566b7c3adb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-EW-A2FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-10A TCGA-EW-A2FS-10A-01D-A17C-01 d6bffedd-6acd-487a-a140-9cdaa9ffdab3 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-EW-A2FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-10A TCGA-EW-A2FS-10A-01D-A17C-01 d6bffedd-6acd-487a-a140-9cdaa9ffdab3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H11_808584.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.155.1008.0 155 07-DEC-11 11.22.18.805000000 AM TCGA-EW-A2FS TCGA-EW-A2FS-10A TCGA-EW-A2FS-10A-01D-A17C-01 d6bffedd-6acd-487a-a140-9cdaa9ffdab3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H11_808584.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-10A TCGA-EW-A2FS-10A-01D-A17C-01 d6bffedd-6acd-487a-a140-9cdaa9ffdab3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H11_808584.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-10A TCGA-EW-A2FS-10A-01D-A17C-01 d6bffedd-6acd-487a-a140-9cdaa9ffdab3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H11_808584.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-10A TCGA-EW-A2FS-10A-01D-A17C-01 d6bffedd-6acd-487a-a140-9cdaa9ffdab3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H11_808584.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-10A TCGA-EW-A2FS-10A-01D-A17C-01 d6bffedd-6acd-487a-a140-9cdaa9ffdab3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H11_808584.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-10A TCGA-EW-A2FS-10A-01D-A17C-01 d6bffedd-6acd-487a-a140-9cdaa9ffdab3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H11_808584.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-10A TCGA-EW-A2FS-10A-01D-A17C-01 d6bffedd-6acd-487a-a140-9cdaa9ffdab3 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_H11_808584.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.155.1008.0 155 07-DEC-11 01.00.05.091000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-10A TCGA-EW-A2FS-10A-01D-A17D-09 663bdc96-b603-4dd7-ab57-27e5ca557a57 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-EW-A2FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-10A TCGA-EW-A2FS-10A-01D-A17E-02 b852a2b1-1478-4a8f-9363-bdf2a5804a71 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-EW-A2FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-EW-A2FS TCGA-EW-A2FS-10A TCGA-EW-A2FS-10A-01W-A186-09 05da084a-1a0a-4d0e-96f3-c382b30779c7 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-EW-A2FS.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-01A TCGA-EW-A2FV-01A-11D-A17C-01 6c8f4fa1-9a13-4038-9ec1-a6b75b369488 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-EW-A2FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-01A TCGA-EW-A2FV-01A-11D-A17C-01 6c8f4fa1-9a13-4038-9ec1-a6b75b369488 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_E04_808552.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.155.1008.0 155 07-DEC-11 11.22.18.805000000 AM TCGA-EW-A2FV TCGA-EW-A2FV-01A TCGA-EW-A2FV-01A-11D-A17C-01 6c8f4fa1-9a13-4038-9ec1-a6b75b369488 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_E04_808552.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-01A TCGA-EW-A2FV-01A-11D-A17C-01 6c8f4fa1-9a13-4038-9ec1-a6b75b369488 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_E04_808552.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-01A TCGA-EW-A2FV-01A-11D-A17C-01 6c8f4fa1-9a13-4038-9ec1-a6b75b369488 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_E04_808552.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-01A TCGA-EW-A2FV-01A-11D-A17C-01 6c8f4fa1-9a13-4038-9ec1-a6b75b369488 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_E04_808552.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-01A TCGA-EW-A2FV-01A-11D-A17C-01 6c8f4fa1-9a13-4038-9ec1-a6b75b369488 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_E04_808552.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-01A TCGA-EW-A2FV-01A-11D-A17C-01 6c8f4fa1-9a13-4038-9ec1-a6b75b369488 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_E04_808552.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-01A TCGA-EW-A2FV-01A-11D-A17C-01 6c8f4fa1-9a13-4038-9ec1-a6b75b369488 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_E04_808552.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.155.1008.0 155 07-DEC-11 01.00.05.091000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-01A TCGA-EW-A2FV-01A-11D-A17D-09 4688c20c-f73d-4203-a123-acc833628062 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-EW-A2FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-01A TCGA-EW-A2FV-01A-11D-A17E-02 31ae74d0-0a4c-41aa-967c-a8857ed4a3f0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-EW-A2FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-01A TCGA-EW-A2FV-01A-11D-A17F-05 fce4388f-f3ad-45e1-a703-5123171156bb Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-EW-A2FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-01A TCGA-EW-A2FV-01A-11D-A17F-05 fce4388f-f3ad-45e1-a703-5123171156bb DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.16.1.0/6057833166_R06C01_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.16.1.0 155 07-NOV-11 04.28.40.688000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-01A TCGA-EW-A2FV-01A-11D-A17F-05 fce4388f-f3ad-45e1-a703-5123171156bb DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.16.1.0/6057833166_R06C01_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.16.1.0 155 07-NOV-11 04.28.40.688000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-01A TCGA-EW-A2FV-01A-11D-A17F-05 fce4388f-f3ad-45e1-a703-5123171156bb DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.16.1.0/jhu-usc.edu_BRCA.HumanMethylation450.16.lvl-2.TCGA-EW-A2FV-01A-11D-A17F-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.16.1.0 155 07-NOV-11 05.12.17.553000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-01A TCGA-EW-A2FV-01A-11D-A17F-05 fce4388f-f3ad-45e1-a703-5123171156bb DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.16.1.0/jhu-usc.edu_BRCA.HumanMethylation450.16.lvl-3.TCGA-EW-A2FV-01A-11D-A17F-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.16.1.0 155 07-NOV-11 05.40.09.858000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-01A TCGA-EW-A2FV-01A-11R-A17A-13 11736221-1b12-4576-a404-8f2065e81acf Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-EW-A2FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-01A TCGA-EW-A2FV-01A-11R-A17A-13 11736221-1b12-4576-a404-8f2065e81acf miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A2FV-01A-11R-A17A-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 155 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-01A TCGA-EW-A2FV-01A-11R-A17A-13 11736221-1b12-4576-a404-8f2065e81acf miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A2FV-01A-11R-A17A-13.mirna.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 155 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-01A TCGA-EW-A2FV-01A-11R-A17B-07 d60bfd82-87f0-4f13-8e90-6766beb84e9a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-EW-A2FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-01A TCGA-EW-A2FV-01A-11R-A17B-07 d60bfd82-87f0-4f13-8e90-6766beb84e9a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_558549.TCGA-EW-A2FV-01A-11R-A17B-07.111003_UNC13-SN749_0121_AB020YABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 155 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-01A TCGA-EW-A2FV-01A-11R-A17B-07 d60bfd82-87f0-4f13-8e90-6766beb84e9a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_558570.TCGA-EW-A2FV-01A-11R-A17B-07.111003_UNC13-SN749_0121_AB020YABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 155 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-01A TCGA-EW-A2FV-01A-11R-A17B-07 d60bfd82-87f0-4f13-8e90-6766beb84e9a RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_558606.TCGA-EW-A2FV-01A-11R-A17B-07.111003_UNC13-SN749_0121_AB020YABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 155 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-01A TCGA-EW-A2FV-01A-11W-A186-09 fa6811ca-a6d6-4284-97cb-dba440554a7b Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-EW-A2FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-10A TCGA-EW-A2FV-10A-01D-A17C-01 ab56c63d-a483-4946-833a-2318ccbeeaf0 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-EW-A2FV.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-10A TCGA-EW-A2FV-10A-01D-A17C-01 ab56c63d-a483-4946-833a-2318ccbeeaf0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_E05_808650.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.155.1008.0 155 07-DEC-11 11.22.18.805000000 AM TCGA-EW-A2FV TCGA-EW-A2FV-10A TCGA-EW-A2FV-10A-01D-A17C-01 ab56c63d-a483-4946-833a-2318ccbeeaf0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_E05_808650.after_5NN.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-10A TCGA-EW-A2FV-10A-01D-A17C-01 ab56c63d-a483-4946-833a-2318ccbeeaf0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_E05_808650.birdseed.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-10A TCGA-EW-A2FV-10A-01D-A17C-01 ab56c63d-a483-4946-833a-2318ccbeeaf0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_E05_808650.byallele.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-10A TCGA-EW-A2FV-10A-01D-A17C-01 ab56c63d-a483-4946-833a-2318ccbeeaf0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_E05_808650.ismpolish.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-10A TCGA-EW-A2FV-10A-01D-A17C-01 ab56c63d-a483-4946-833a-2318ccbeeaf0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_E05_808650.no_outlier.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-10A TCGA-EW-A2FV-10A-01D-A17C-01 ab56c63d-a483-4946-833a-2318ccbeeaf0 SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_E05_808650.raw.copynumber.data.txt 2 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_2.155.1008.0 155 07-DEC-11 12.05.02.109000000 PM TCGA-EW-A2FV TCGA-EW-A2FV-10A TCGA-EW-A2FV-10A-01D-A17C-01 ab56c63d-a483-4946-833a-2318ccbeeaf0 SNP Genome_Wide_SNP_6 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_E02_808558.seg.data.txt 3 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_3.155.1008.0 155 07-DEC-11 01.00.05.091000000 PM TCGA-EW-A2FW TCGA-EW-A2FW-01A TCGA-EW-A2FW-01A-11D-A17D-09 b8b57c49-55b8-49e7-872f-c17f61f91560 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-EW-A2FW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-EW-A2FW TCGA-EW-A2FW-01A TCGA-EW-A2FW-01A-11D-A17E-02 734a5cdb-85ef-45a4-8f75-6da10bf1d182 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-EW-A2FW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-EW-A2FW TCGA-EW-A2FW-01A TCGA-EW-A2FW-01A-11D-A17F-05 992f3f2a-e060-4f67-b529-117106a50c78 Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-EW-A2FW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-EW-A2FW TCGA-EW-A2FW-01A TCGA-EW-A2FW-01A-11D-A17F-05 992f3f2a-e060-4f67-b529-117106a50c78 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.16.1.0/6057833159_R02C02_Grn.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.16.1.0 155 07-NOV-11 04.28.40.688000000 PM TCGA-EW-A2FW TCGA-EW-A2FW-01A TCGA-EW-A2FW-01A-11D-A17F-05 992f3f2a-e060-4f67-b529-117106a50c78 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_1.16.1.0/6057833159_R02C02_Red.idat 1 jhu-usc.edu_BRCA.HumanMethylation450.Level_1.16.1.0 155 07-NOV-11 04.28.40.688000000 PM TCGA-EW-A2FW TCGA-EW-A2FW-01A TCGA-EW-A2FW-01A-11D-A17F-05 992f3f2a-e060-4f67-b529-117106a50c78 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_2.16.1.0/jhu-usc.edu_BRCA.HumanMethylation450.16.lvl-2.TCGA-EW-A2FW-01A-11D-A17F-05.txt 2 jhu-usc.edu_BRCA.HumanMethylation450.Level_2.16.1.0 155 07-NOV-11 05.12.17.553000000 PM TCGA-EW-A2FW TCGA-EW-A2FW-01A TCGA-EW-A2FW-01A-11D-A17F-05 992f3f2a-e060-4f67-b529-117106a50c78 DNA Methylation HumanMethylation450 /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/jhu-usc.edu/humanmethylation450/methylation/jhu-usc.edu_BRCA.HumanMethylation450.Level_3.16.1.0/jhu-usc.edu_BRCA.HumanMethylation450.16.lvl-3.TCGA-EW-A2FW-01A-11D-A17F-05.txt 3 jhu-usc.edu_BRCA.HumanMethylation450.Level_3.16.1.0 155 07-NOV-11 05.40.09.858000000 PM TCGA-EW-A2FW TCGA-EW-A2FW-01A TCGA-EW-A2FW-01A-11R-A17A-13 f9c9373b-a033-4897-bba9-06cb1dd1db9f Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-EW-A2FW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-EW-A2FW TCGA-EW-A2FW-01A TCGA-EW-A2FW-01A-11R-A17A-13 f9c9373b-a033-4897-bba9-06cb1dd1db9f miRNASeq IlluminaHiSeq_miRNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/bcgsc.ca/illuminahiseq_mirnaseq/mirnaseq/bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0/TCGA-EW-A2FW-01A-11R-A17A-13.isoform.quantification.txt 3 bcgsc.ca_BRCA.IlluminaHiSeq_miRNASeq.Level_3.1.1.0 155 31-OCT-11 10.17.59.939000000 PM TCGA-EW-A2FW TCGA-EW-A2FW-01A TCGA-EW-A2FW-01A-11R-A17A-13 f9c9373b-a033-4897-bba9-06cb1dd1db9f miRNASeq IlluminaHiSeq_miRNASeq 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/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_842447.TCGA-EW-A2FW-01A-11R-A17B-07.111003_UNC9-SN296_0247_BB01WJABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 155 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A2FW TCGA-EW-A2FW-01A TCGA-EW-A2FW-01A-11R-A17B-07 743f2962-126c-4b28-92fa-250b1170b825 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_842450.TCGA-EW-A2FW-01A-11R-A17B-07.111003_UNC9-SN296_0247_BB01WJABXX.8.trimmed.annotated.gene.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 155 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A2FW TCGA-EW-A2FW-01A TCGA-EW-A2FW-01A-11R-A17B-07 743f2962-126c-4b28-92fa-250b1170b825 RNASeq IlluminaHiSeq_RNASeq /tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/brca/cgcc/unc.edu/illuminahiseq_rnaseq/rnaseq/unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0/UNCID_842602.TCGA-EW-A2FW-01A-11R-A17B-07.111003_UNC9-SN296_0247_BB01WJABXX.8.trimmed.annotated.translated_to_genomic.exon.quantification.txt 3 unc.edu_BRCA.IlluminaHiSeq_RNASeq.Level_3.1.1.0 155 09-FEB-12 06.18.17.220000000 PM TCGA-EW-A2FW TCGA-EW-A2FW-01A TCGA-EW-A2FW-01A-11W-A186-09 b3bc5cc5-edd1-4639-9007-8b46f4eeb91a Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-EW-A2FW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-EW-A2FW TCGA-EW-A2FW-10A TCGA-EW-A2FW-10A-01D-A17C-01 e4480b10-2966-4b7c-932c-ede28c819aff Complete Clinical Set bio /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/bcr/nationwidechildrens.org/bio/clin/nationwidechildrens.org_BRCA.bio.Level_1.155.9.0/nationwidechildrens.org_biospecimen.TCGA-EW-A2FW.xml 1 nationwidechildrens.org_BRCA.bio.Level_1.155.9.0 155 27-JAN-12 03.37.44.999000000 PM TCGA-EW-A2FW TCGA-EW-A2FW-10A TCGA-EW-A2FW-10A-01D-A17C-01 e4480b10-2966-4b7c-932c-ede28c819aff SNP Genome_Wide_SNP_6 /tcgafiles/ftp_auth/distro_ftpusers/tcga4yeo/tumor/brca/cgcc/broad.mit.edu/genome_wide_snp_6/snp/broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.155.1008.0/HELVE_p_TCGA_b139_154_155_SNP_N_GenomeWideSNP_6_F10_808658.CEL 1 broad.mit.edu_BRCA.Genome_Wide_SNP_6.Level_1.155.1008.0 155 07-DEC-11 11.22.18.805000000 AM TCGA-EW-A2FW TCGA-EW-A2FW-10A TCGA-EW-A2FW-10A-01D-A17C-01 e4480b10-2966-4b7c-932c-ede28c819aff SNP Genome_Wide_SNP_6 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